Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32360.t1 | KEH40400.1 | 97.5 | 320 | 8 | 0 | 1 | 320 | 1 | 320 | 2.20E-175 | 624.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32360.t1 | A2Z3C4 | 64.0 | 242 | 85 | 2 | 78 | 317 | 80 | 321 | 6.6e-83 | 308.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32360.t1 | A0A072VQL3 | 97.5 | 320 | 8 | 0 | 1 | 320 | 1 | 320 | 1.6e-175 | 624.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049698 | MS.gene32360 | 0.811187 | 7.94E-51 | -1.69E-46 |
| MS.gene054118 | MS.gene32360 | 0.863055 | 3.27E-64 | -1.69E-46 |
| MS.gene054584 | MS.gene32360 | 0.800217 | 1.60E-48 | -1.69E-46 |
| MS.gene058909 | MS.gene32360 | 0.846859 | 1.67E-59 | -1.69E-46 |
| MS.gene058912 | MS.gene32360 | 0.841643 | 4.19E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32360.t1 | MTR_1g028320 | 97.500 | 320 | 8 | 0 | 1 | 320 | 1 | 320 | 0.0 | 639 |
| MS.gene32360.t1 | MTR_1g028330 | 62.229 | 323 | 113 | 6 | 1 | 319 | 1 | 318 | 2.60e-134 | 384 |
| MS.gene32360.t1 | MTR_3g092110 | 63.986 | 286 | 92 | 5 | 37 | 317 | 30 | 309 | 2.86e-121 | 351 |
| MS.gene32360.t1 | MTR_5g045000 | 48.016 | 252 | 128 | 3 | 69 | 317 | 8 | 259 | 2.75e-78 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32360.t1 | AT5G24400 | 63.454 | 249 | 84 | 4 | 72 | 317 | 81 | 325 | 1.65e-105 | 311 |
| MS.gene32360.t1 | AT3G49360 | 53.878 | 245 | 104 | 4 | 78 | 317 | 11 | 251 | 9.30e-86 | 259 |
| MS.gene32360.t1 | AT1G13700 | 50.413 | 242 | 116 | 2 | 80 | 317 | 20 | 261 | 4.07e-82 | 249 |
| MS.gene32360.t1 | AT1G13700 | 50.413 | 242 | 116 | 2 | 80 | 317 | 20 | 261 | 4.07e-82 | 249 |
| MS.gene32360.t1 | AT1G13700 | 50.413 | 242 | 116 | 2 | 80 | 317 | 20 | 261 | 4.07e-82 | 249 |
| MS.gene32360.t1 | AT5G24410 | 52.245 | 245 | 108 | 4 | 78 | 317 | 17 | 257 | 3.32e-80 | 244 |
| MS.gene32360.t1 | AT5G24420 | 52.033 | 246 | 108 | 5 | 78 | 317 | 11 | 252 | 1.17e-77 | 238 |
Find 70 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCAAAACTGTTTA+AGG | 0.136078 | 1.4:-13628185 | MS.gene32360:CDS |
| ATGTTTGAATTTCAGGAAAT+TGG | 0.207149 | 1.4:-13629151 | MS.gene32360:intron |
| TGCTTGTAACCAAACGTCTT+AGG | 0.231535 | 1.4:+13628551 | None:intergenic |
| ATTCTCTCTGATGGTGGTTT+TGG | 0.280005 | 1.4:+13628382 | None:intergenic |
| AACACTTTATTATGCCTTAG+AGG | 0.288583 | 1.4:+13629594 | None:intergenic |
| AAACCATAGATTGGACAAAA+TGG | 0.303574 | 1.4:-13629110 | MS.gene32360:CDS |
| AGGAGCATGAGATCAAATTT+TGG | 0.311450 | 1.4:+13628499 | None:intergenic |
| TATTTCACTGTTGCTTTGTC+TGG | 0.315803 | 1.4:-13629420 | MS.gene32360:CDS |
| TTACTTTCTAAGTGATCCTT+TGG | 0.360528 | 1.4:+13629057 | None:intergenic |
| GGAACATCTTGCTGTTTCAT+TGG | 0.368878 | 1.4:-13629490 | MS.gene32360:CDS |
| GTGCACAAAATAAGCTACTT+TGG | 0.391008 | 1.4:+13629688 | None:intergenic |
| TAAACATTAAGAGGAGGAAT+TGG | 0.404272 | 1.4:+13628628 | None:intergenic |
| TGATCTCATGCTCCTAGGTA+TGG | 0.406465 | 1.4:-13628491 | MS.gene32360:CDS |
| TGAAACAACCCTAAGACGTT+TGG | 0.412525 | 1.4:-13628560 | MS.gene32360:CDS |
| TTCTCCAAGAGGATCAGAAA+TGG | 0.419423 | 1.4:-13628426 | MS.gene32360:CDS |
| AACAAATTCATCAAAGAAAG+AGG | 0.421608 | 1.4:-13629444 | MS.gene32360:CDS |
| GCTTGTAACCAAACGTCTTA+GGG | 0.422376 | 1.4:+13628552 | None:intergenic |
| TTCACTGTTGCTTTGTCTGG+TGG | 0.432382 | 1.4:-13629417 | MS.gene32360:CDS |
| TCAATAGCATAAACATTAAG+AGG | 0.433933 | 1.4:+13628619 | None:intergenic |
| GGCATCACTTAAGTGGGAAA+AGG | 0.443000 | 1.4:-13629541 | MS.gene32360:CDS |
| TACTTTCTAAGTGATCCTTT+GGG | 0.443581 | 1.4:+13629058 | None:intergenic |
| TAACCCATTTCTGATCCTCT+TGG | 0.454962 | 1.4:+13628422 | None:intergenic |
| GAAAAGGTTTCACCTCTTGA+AGG | 0.456560 | 1.4:-13628235 | MS.gene32360:CDS |
| CATGTTGCATCTTTATTCCC+AGG | 0.457125 | 1.4:-13628457 | MS.gene32360:CDS |
| CTCTTGAAGGGGAATTGAAA+TGG | 0.460789 | 1.4:-13628222 | MS.gene32360:CDS |
| AAAGATGCAACATGTCCATC+TGG | 0.461834 | 1.4:+13628466 | None:intergenic |
| TAAACATCAGCTGCTCCATC+AGG | 0.473530 | 1.4:+13628583 | None:intergenic |
| TGTTATGTTGCCTGTTGAAA+AGG | 0.474855 | 1.4:-13628251 | MS.gene32360:CDS |
| CCAATCTATGGTTTCAGCAT+AGG | 0.478027 | 1.4:+13629119 | None:intergenic |
| AATTATAAGCTTGCCAGTGA+TGG | 0.484242 | 1.4:-13629036 | MS.gene32360:CDS |
| CAATCTATGGTTTCAGCATA+GGG | 0.484769 | 1.4:+13629120 | None:intergenic |
| CGCTGTTTACACTGCACTTG+AGG | 0.487318 | 1.4:-13628287 | MS.gene32360:CDS |
| GATCTCATGCTCCTAGGTAT+GGG | 0.491824 | 1.4:-13628490 | MS.gene32360:CDS |
| CCTATGCTGAAACCATAGAT+TGG | 0.494060 | 1.4:-13629119 | MS.gene32360:CDS |
| AAATAGAGGCATCACTTAAG+TGG | 0.496228 | 1.4:-13629548 | MS.gene32360:CDS |
| GCATCACTTAAGTGGGAAAA+GGG | 0.504570 | 1.4:-13629540 | MS.gene32360:CDS |
| TCTCCAAGAGGATCAGAAAT+GGG | 0.506655 | 1.4:-13628425 | MS.gene32360:CDS |
| CAGCTGCTCCATCAGGTGGT+AGG | 0.508616 | 1.4:+13628590 | None:intergenic |
| AAATTTGATCTCATGCTCCT+AGG | 0.509138 | 1.4:-13628496 | MS.gene32360:CDS |
| AAAAGGTTTCACCTCTTGAA+GGG | 0.515655 | 1.4:-13628234 | MS.gene32360:CDS |
| AGTCACCACCATTGCTACAT+TGG | 0.519545 | 1.4:+13628327 | None:intergenic |
| AGCTGCTCCATCAGGTGGTA+GGG | 0.529718 | 1.4:+13628591 | None:intergenic |
| GTGAAAGTAATTCTCTCTGA+TGG | 0.540458 | 1.4:+13628373 | None:intergenic |
| GATCATTGATCAAGTACCTA+AGG | 0.543945 | 1.4:-13629395 | MS.gene32360:intron |
| ATTAGTCAAAGTTGTTGAGA+AGG | 0.549232 | 1.4:+13629722 | None:intergenic |
| TTGGAAGAAGCATTGATCAC+TGG | 0.552610 | 1.4:+13628346 | None:intergenic |
| CTCCTAGGTATGGGTCCAGA+TGG | 0.553952 | 1.4:-13628481 | MS.gene32360:CDS |
| AATAGAGGCATCACTTAAGT+GGG | 0.554935 | 1.4:-13629547 | MS.gene32360:CDS |
| TTGAAATGGTACTTAGACAA+AGG | 0.555841 | 1.4:-13628208 | MS.gene32360:CDS |
| TGCTTCTTCCAATGTAGCAA+TGG | 0.565976 | 1.4:-13628335 | MS.gene32360:CDS |
| GCAATGGTGGTGACTGGCGC+GGG | 0.566203 | 1.4:-13628319 | MS.gene32360:CDS |
| CATTTCAATTCCCCTTCAAG+AGG | 0.566687 | 1.4:+13628223 | None:intergenic |
| GATGATTCCCTACCACCTGA+TGG | 0.566852 | 1.4:-13628598 | MS.gene32360:CDS |
| AATGTAGCAATGGTGGTGAC+TGG | 0.575191 | 1.4:-13628325 | MS.gene32360:CDS |
| AAAATTGATGTCTTTAGTGA+TGG | 0.578624 | 1.4:+13629651 | None:intergenic |
| AAAGGGTTATAAGAATGTTG+AGG | 0.580239 | 1.4:-13629523 | MS.gene32360:CDS |
| AAAGGTTTCACCTCTTGAAG+GGG | 0.598919 | 1.4:-13628233 | MS.gene32360:CDS |
| CTTGGAGAGAAATCCATCAC+TGG | 0.601315 | 1.4:+13629023 | None:intergenic |
| CTTGGAGAAGAGCATGACCT+GGG | 0.611662 | 1.4:+13628440 | None:intergenic |
| AAAGTAATTCTCTCTGATGG+TGG | 0.620404 | 1.4:+13628376 | None:intergenic |
| CAGTGATGGATTTCTCTCCA+AGG | 0.622114 | 1.4:-13629022 | MS.gene32360:intron |
| TCTTGGAGAAGAGCATGACC+TGG | 0.622800 | 1.4:+13628439 | None:intergenic |
| TGATGAGAGAGTTGTCCCAA+AGG | 0.638984 | 1.4:-13629073 | MS.gene32360:CDS |
| ACATCAGCTGCTCCATCAGG+TGG | 0.642046 | 1.4:+13628586 | None:intergenic |
| ATAGCATAAACATTAAGAGG+AGG | 0.649414 | 1.4:+13628622 | None:intergenic |
| AGGTCATGCTCTTCTCCAAG+AGG | 0.654284 | 1.4:-13628437 | MS.gene32360:CDS |
| AGCAATGGTGGTGACTGGCG+CGG | 0.655666 | 1.4:-13628320 | MS.gene32360:CDS |
| GTCCATCTGGACCCATACCT+AGG | 0.668407 | 1.4:+13628479 | None:intergenic |
| TTCTTCCAATGTAGCAATGG+TGG | 0.677085 | 1.4:-13628332 | MS.gene32360:CDS |
| CTCAAGTGCAGTGTAAACAG+CGG | 0.705808 | 1.4:+13628288 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTAGAAATAAATAATTA+AGG | + | chr1.4:13628707-13628726 | None:intergenic | 10.0% |
| !! | ATAGTAACATTTATATTAAA+AGG | + | chr1.4:13628991-13629010 | None:intergenic | 10.0% |
| !! | ATTTAAATGAAATTGTAATT+AGG | - | chr1.4:13628636-13628655 | MS.gene32360:intron | 10.0% |
| !! | AAATAAAAAATGTGATTAGA+AGG | + | chr1.4:13629224-13629243 | None:intergenic | 15.0% |
| !! | AATCACATGAAATTTAAATT+AGG | + | chr1.4:13628593-13628612 | None:intergenic | 15.0% |
| !! | ATGATATTGTAATTAGAGAA+GGG | + | chr1.4:13629127-13629146 | None:intergenic | 20.0% |
| !! | GAAAATTATGTTTGAATTTC+AGG | - | chr1.4:13628748-13628767 | MS.gene32360:intron | 20.0% |
| !! | TATGATATTGTAATTAGAGA+AGG | + | chr1.4:13629128-13629147 | None:intergenic | 20.0% |
| !! | TGGATTTCAAAAACAAAAAA+TGG | - | chr1.4:13628679-13628698 | MS.gene32360:intron | 20.0% |
| !! | TTCTCTAATTACAATATCAT+AGG | - | chr1.4:13629127-13629146 | MS.gene32360:CDS | 20.0% |
| !!! | ATCAAATTTTGGTAATTCAT+TGG | + | chr1.4:13629399-13629418 | None:intergenic | 20.0% |
| !!! | ATGTGATTTTAATGTTACAT+TGG | - | chr1.4:13628605-13628624 | MS.gene32360:CDS | 20.0% |
| !!! | ATTTTCATTATTCTTTTGTC+AGG | - | chr1.4:13629253-13629272 | MS.gene32360:intron | 20.0% |
| !!! | ATTTTGATGAAATTGCAATT+TGG | - | chr1.4:13628659-13628678 | MS.gene32360:intron | 20.0% |
| !!! | GAAATTAATCATTTTGATGT+TGG | - | chr1.4:13628964-13628983 | MS.gene32360:intron | 20.0% |
| ! | AAAATTGATGTCTTTAGTGA+TGG | + | chr1.4:13628258-13628277 | None:intergenic | 25.0% |
| ! | AACAAATTCATCAAAGAAAG+AGG | - | chr1.4:13628462-13628481 | MS.gene32360:CDS | 25.0% |
| ! | ATGTTTGAATTTCAGGAAAT+TGG | - | chr1.4:13628755-13628774 | MS.gene32360:intron | 25.0% |
| ! | TCAATAGCATAAACATTAAG+AGG | + | chr1.4:13629290-13629309 | None:intergenic | 25.0% |
| ! | TTCAAGCAAAATAATCAACT+TGG | + | chr1.4:13628925-13628944 | None:intergenic | 25.0% |
| ! | TTGTTAAGATTACATACCTT+AGG | + | chr1.4:13628530-13628549 | None:intergenic | 25.0% |
| !!! | GATTTTAATGTTACATTGGT+TGG | - | chr1.4:13628609-13628628 | MS.gene32360:CDS | 25.0% |
| AAACCATAGATTGGACAAAA+TGG | - | chr1.4:13628796-13628815 | MS.gene32360:intron | 30.0% | |
| AAAGGGTTATAAGAATGTTG+AGG | - | chr1.4:13628383-13628402 | MS.gene32360:CDS | 30.0% | |
| AAATCGAACAGCTAATCAAA+TGG | + | chr1.4:13629085-13629104 | None:intergenic | 30.0% | |
| AACACTTTATTATGCCTTAG+AGG | + | chr1.4:13628315-13628334 | None:intergenic | 30.0% | |
| ATAGCATAAACATTAAGAGG+AGG | + | chr1.4:13629287-13629306 | None:intergenic | 30.0% | |
| ATTAGTCAAAGTTGTTGAGA+AGG | + | chr1.4:13628187-13628206 | None:intergenic | 30.0% | |
| GAATTAACAATTAGCGAACT+TGG | + | chr1.4:13629166-13629185 | None:intergenic | 30.0% | |
| TAAACATTAAGAGGAGGAAT+TGG | + | chr1.4:13629281-13629300 | None:intergenic | 30.0% | |
| TACTTTCTAAGTGATCCTTT+GGG | + | chr1.4:13628851-13628870 | None:intergenic | 30.0% | |
| TTACTTTCTAAGTGATCCTT+TGG | + | chr1.4:13628852-13628871 | None:intergenic | 30.0% | |
| TTGAAATGGTACTTAGACAA+AGG | - | chr1.4:13629698-13629717 | MS.gene32360:CDS | 30.0% | |
| ! | AACCAATGTTTTTCCCAATT+TGG | + | chr1.4:13628287-13628306 | None:intergenic | 30.0% |
| ! | ACCAATGTTTTTCCCAATTT+GGG | + | chr1.4:13628286-13628305 | None:intergenic | 30.0% |
| ! | ATTTTTCCGACACATCTATT+TGG | + | chr1.4:13628342-13628361 | None:intergenic | 30.0% |
| ! | CAATTTTACCAACCCAAATT+GGG | - | chr1.4:13628271-13628290 | MS.gene32360:CDS | 30.0% |
| ! | TCAATTTTACCAACCCAAAT+TGG | - | chr1.4:13628270-13628289 | MS.gene32360:CDS | 30.0% |
| ! | TTTTCACCAAATAGATGTGT+CGG | - | chr1.4:13628333-13628352 | MS.gene32360:CDS | 30.0% |
| AAAAGGTTTCACCTCTTGAA+GGG | - | chr1.4:13629672-13629691 | MS.gene32360:CDS | 35.0% | |
| AAAGTAATTCTCTCTGATGG+TGG | + | chr1.4:13629533-13629552 | None:intergenic | 35.0% | |
| AAATTTGATCTCATGCTCCT+AGG | - | chr1.4:13629410-13629429 | MS.gene32360:CDS | 35.0% | |
| AATTATAAGCTTGCCAGTGA+TGG | - | chr1.4:13628870-13628889 | MS.gene32360:intron | 35.0% | |
| ACCCAAATTGGGAAAAACAT+TGG | - | chr1.4:13628282-13628301 | MS.gene32360:CDS | 35.0% | |
| CAATCTATGGTTTCAGCATA+GGG | + | chr1.4:13628789-13628808 | None:intergenic | 35.0% | |
| CGACAATAAGATTCATTGAC+AGG | + | chr1.4:13629188-13629207 | None:intergenic | 35.0% | |
| CTTATTGTCGATCTTTAGTG+AGG | - | chr1.4:13629198-13629217 | MS.gene32360:intron | 35.0% | |
| GATCATTGATCAAGTACCTA+AGG | - | chr1.4:13628511-13628530 | MS.gene32360:CDS | 35.0% | |
| GGCACATGAATTAATTACCT+TGG | + | chr1.4:13628904-13628923 | None:intergenic | 35.0% | |
| GTGAAAGTAATTCTCTCTGA+TGG | + | chr1.4:13629536-13629555 | None:intergenic | 35.0% | |
| GTGCACAAAATAAGCTACTT+TGG | + | chr1.4:13628221-13628240 | None:intergenic | 35.0% | |
| TAGATGTGTCGGAAAAATAG+AGG | - | chr1.4:13628344-13628363 | MS.gene32360:CDS | 35.0% | |
| TGCTTGAAGAAGAATGATGA+TGG | - | chr1.4:13628937-13628956 | MS.gene32360:intron | 35.0% | |
| TGTTATGTTGCCTGTTGAAA+AGG | - | chr1.4:13629655-13629674 | MS.gene32360:CDS | 35.0% | |
| ! | ATGTTTTTCCCAATTTGGGT+TGG | + | chr1.4:13628282-13628301 | None:intergenic | 35.0% |
| ! | GACAAAATGGCATGTTTTCT+GGG | - | chr1.4:13628809-13628828 | MS.gene32360:intron | 35.0% |
| ! | TGCTGCTTCAAAACTGTTTA+AGG | - | chr1.4:13629721-13629740 | MS.gene32360:CDS | 35.0% |
| !! | AAATAGAGGCATCACTTAAG+TGG | - | chr1.4:13628358-13628377 | MS.gene32360:CDS | 35.0% |
| !! | AATAGAGGCATCACTTAAGT+GGG | - | chr1.4:13628359-13628378 | MS.gene32360:CDS | 35.0% |
| !! | AGGAGCATGAGATCAAATTT+TGG | + | chr1.4:13629410-13629429 | None:intergenic | 35.0% |
| !! | TATTTCACTGTTGCTTTGTC+TGG | - | chr1.4:13628486-13628505 | MS.gene32360:CDS | 35.0% |
| !!! | ACATTGGTTTTCAACCTCTA+AGG | - | chr1.4:13628298-13628317 | MS.gene32360:CDS | 35.0% |
| !!! | ATGCCATTTTGTCCAATCTA+TGG | + | chr1.4:13628802-13628821 | None:intergenic | 35.0% |
| AAAGATGCAACATGTCCATC+TGG | + | chr1.4:13629443-13629462 | None:intergenic | 40.0% | |
| AAAGGTTTCACCTCTTGAAG+GGG | - | chr1.4:13629673-13629692 | MS.gene32360:CDS | 40.0% | |
| AGACACAACTATCTACCACA+TGG | + | chr1.4:13629057-13629076 | None:intergenic | 40.0% | |
| CATGTTGCATCTTTATTCCC+AGG | - | chr1.4:13629449-13629468 | MS.gene32360:CDS | 40.0% | |
| CATTTCAATTCCCCTTCAAG+AGG | + | chr1.4:13629686-13629705 | None:intergenic | 40.0% | |
| CCAATCTATGGTTTCAGCAT+AGG | + | chr1.4:13628790-13628809 | None:intergenic | 40.0% | |
| CCTATGCTGAAACCATAGAT+TGG | - | chr1.4:13628787-13628806 | MS.gene32360:intron | 40.0% | |
| CTCTTGAAGGGGAATTGAAA+TGG | - | chr1.4:13629684-13629703 | MS.gene32360:CDS | 40.0% | |
| GAAAAGGTTTCACCTCTTGA+AGG | - | chr1.4:13629671-13629690 | MS.gene32360:CDS | 40.0% | |
| GCATCACTTAAGTGGGAAAA+GGG | - | chr1.4:13628366-13628385 | MS.gene32360:CDS | 40.0% | |
| GCTTGTAACCAAACGTCTTA+GGG | + | chr1.4:13629357-13629376 | None:intergenic | 40.0% | |
| TAACCCATTTCTGATCCTCT+TGG | + | chr1.4:13629487-13629506 | None:intergenic | 40.0% | |
| TCTCCAAGAGGATCAGAAAT+GGG | - | chr1.4:13629481-13629500 | MS.gene32360:CDS | 40.0% | |
| TGAAACAACCCTAAGACGTT+TGG | - | chr1.4:13629346-13629365 | MS.gene32360:intron | 40.0% | |
| TGCTTCTTCCAATGTAGCAA+TGG | - | chr1.4:13629571-13629590 | MS.gene32360:CDS | 40.0% | |
| TGCTTGTAACCAAACGTCTT+AGG | + | chr1.4:13629358-13629377 | None:intergenic | 40.0% | |
| TTCTCCAAGAGGATCAGAAA+TGG | - | chr1.4:13629480-13629499 | MS.gene32360:CDS | 40.0% | |
| TTCTTCCAATGTAGCAATGG+TGG | - | chr1.4:13629574-13629593 | MS.gene32360:CDS | 40.0% | |
| ! | AGAGGTGAAACCTTTTCAAC+AGG | + | chr1.4:13629668-13629687 | None:intergenic | 40.0% |
| ! | GAATGTTGAGGTTTTCAGCA+AGG | - | chr1.4:13628395-13628414 | MS.gene32360:CDS | 40.0% |
| ! | GGACAAAATGGCATGTTTTC+TGG | - | chr1.4:13628808-13628827 | MS.gene32360:intron | 40.0% |
| !! | GGAACATCTTGCTGTTTCAT+TGG | - | chr1.4:13628416-13628435 | MS.gene32360:CDS | 40.0% |
| !! | TTGGAAGAAGCATTGATCAC+TGG | + | chr1.4:13629563-13629582 | None:intergenic | 40.0% |
| !!! | ATTCTCTCTGATGGTGGTTT+TGG | + | chr1.4:13629527-13629546 | None:intergenic | 40.0% |
| AGTCACCACCATTGCTACAT+TGG | + | chr1.4:13629582-13629601 | None:intergenic | 45.0% | |
| CTCAAGTGCAGTGTAAACAG+CGG | + | chr1.4:13629621-13629640 | None:intergenic | 45.0% | |
| CTTGGAGAGAAATCCATCAC+TGG | + | chr1.4:13628886-13628905 | None:intergenic | 45.0% | |
| GATCTCATGCTCCTAGGTAT+GGG | - | chr1.4:13629416-13629435 | MS.gene32360:CDS | 45.0% | |
| GGCATCACTTAAGTGGGAAA+AGG | - | chr1.4:13628365-13628384 | MS.gene32360:CDS | 45.0% | |
| TAAACATCAGCTGCTCCATC+AGG | + | chr1.4:13629326-13629345 | None:intergenic | 45.0% | |
| TACTAGCATATCGTGCCATG+TGG | - | chr1.4:13629039-13629058 | MS.gene32360:CDS | 45.0% | |
| TGATCTCATGCTCCTAGGTA+TGG | - | chr1.4:13629415-13629434 | MS.gene32360:CDS | 45.0% | |
| TGATGAGAGAGTTGTCCCAA+AGG | - | chr1.4:13628833-13628852 | MS.gene32360:intron | 45.0% | |
| ! | AATGTAGCAATGGTGGTGAC+TGG | - | chr1.4:13629581-13629600 | MS.gene32360:CDS | 45.0% |
| !! | CAGTGATGGATTTCTCTCCA+AGG | - | chr1.4:13628884-13628903 | MS.gene32360:intron | 45.0% |
| !! | TTCACTGTTGCTTTGTCTGG+TGG | - | chr1.4:13628489-13628508 | MS.gene32360:CDS | 45.0% |
| AGGTCATGCTCTTCTCCAAG+AGG | - | chr1.4:13629469-13629488 | MS.gene32360:CDS | 50.0% | |
| CGCTGTTTACACTGCACTTG+AGG | - | chr1.4:13629619-13629638 | MS.gene32360:CDS | 50.0% | |
| GATGATTCCCTACCACCTGA+TGG | - | chr1.4:13629308-13629327 | MS.gene32360:intron | 50.0% | |
| ! | CTTGGAGAAGAGCATGACCT+GGG | + | chr1.4:13629469-13629488 | None:intergenic | 50.0% |
| ! | TCTTGGAGAAGAGCATGACC+TGG | + | chr1.4:13629470-13629489 | None:intergenic | 50.0% |
| !!! | GTGGTTTTGGTGAGTCAGTG+AGG | + | chr1.4:13629514-13629533 | None:intergenic | 50.0% |
| ACATCAGCTGCTCCATCAGG+TGG | + | chr1.4:13629323-13629342 | None:intergenic | 55.0% | |
| AGCTGCTCCATCAGGTGGTA+GGG | + | chr1.4:13629318-13629337 | None:intergenic | 55.0% | |
| CTCCTAGGTATGGGTCCAGA+TGG | - | chr1.4:13629425-13629444 | MS.gene32360:CDS | 55.0% | |
| GTCCATCTGGACCCATACCT+AGG | + | chr1.4:13629430-13629449 | None:intergenic | 55.0% | |
| CAGCTGCTCCATCAGGTGGT+AGG | + | chr1.4:13629319-13629338 | None:intergenic | 60.0% | |
| ! | AGCAATGGTGGTGACTGGCG+CGG | - | chr1.4:13629586-13629605 | MS.gene32360:CDS | 60.0% |
| ! | GCAATGGTGGTGACTGGCGC+GGG | - | chr1.4:13629587-13629606 | MS.gene32360:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 13628180 | 13629748 | 13628180 | ID=MS.gene32360 |
| chr1.4 | mRNA | 13628180 | 13629748 | 13628180 | ID=MS.gene32360.t1;Parent=MS.gene32360 |
| chr1.4 | exon | 13629396 | 13629748 | 13629396 | ID=MS.gene32360.t1.exon1;Parent=MS.gene32360.t1 |
| chr1.4 | CDS | 13629396 | 13629748 | 13629396 | ID=cds.MS.gene32360.t1;Parent=MS.gene32360.t1 |
| chr1.4 | exon | 13629023 | 13629158 | 13629023 | ID=MS.gene32360.t1.exon2;Parent=MS.gene32360.t1 |
| chr1.4 | CDS | 13629023 | 13629158 | 13629023 | ID=cds.MS.gene32360.t1;Parent=MS.gene32360.t1 |
| chr1.4 | exon | 13628180 | 13628653 | 13628180 | ID=MS.gene32360.t1.exon3;Parent=MS.gene32360.t1 |
| chr1.4 | CDS | 13628180 | 13628653 | 13628180 | ID=cds.MS.gene32360.t1;Parent=MS.gene32360.t1 |
| Gene Sequence |
| Protein sequence |
