Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32427.t1 | XP_013466245.1 | 52.6 | 723 | 77 | 2 | 1 | 723 | 1 | 457 | 9.30E-103 | 384.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32427.t1 | A0A072VFB4 | 52.6 | 723 | 77 | 2 | 1 | 723 | 1 | 457 | 6.7e-103 | 384.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene32427 | 0.813442 | 2.55E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene32427 | 0.807684 | 4.48E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene32427 | 0.824415 | 8.17E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene32427 | 0.800333 | 1.51E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene32427 | 0.803002 | 4.29E-49 | -1.69E-46 |
| MS.gene052732 | MS.gene32427 | 0.815811 | 7.64E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene32427 | 0.80999 | 1.44E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene32427 | 0.807299 | 5.41E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene32427 | 0.809404 | 1.92E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene32427 | 0.817144 | 3.84E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene32427 | 0.820451 | 6.81E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene32427 | 0.824224 | 9.06E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene32427 | 0.806172 | 9.36E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene32427 | 0.800856 | 1.18E-48 | -1.69E-46 |
| MS.gene055537 | MS.gene32427 | 0.812016 | 5.24E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene32427 | 0.800587 | 1.34E-48 | -1.69E-46 |
| MS.gene058668 | MS.gene32427 | 0.800785 | 1.22E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32427.t1 | MTR_1g026800 | 80.655 | 336 | 45 | 1 | 1 | 336 | 1 | 316 | 5.90e-179 | 521 |
| MS.gene32427.t1 | MTR_1g026800 | 91.480 | 223 | 19 | 0 | 501 | 723 | 235 | 457 | 1.36e-142 | 427 |
| MS.gene32427.t1 | MTR_1g026800 | 89.024 | 82 | 9 | 0 | 419 | 500 | 235 | 316 | 1.43e-35 | 141 |
| MS.gene32427.t1 | MTR_1g026800 | 85.366 | 82 | 12 | 0 | 378 | 459 | 235 | 316 | 3.34e-33 | 134 |
| MS.gene32427.t1 | MTR_1g026800 | 85.366 | 82 | 12 | 0 | 337 | 418 | 235 | 316 | 3.70e-33 | 134 |
| MS.gene32427.t1 | MTR_1g026810 | 58.103 | 253 | 76 | 4 | 501 | 724 | 124 | 375 | 1.42e-84 | 273 |
| MS.gene32427.t1 | MTR_1g026810 | 49.138 | 232 | 88 | 3 | 135 | 336 | 3 | 234 | 1.22e-51 | 184 |
| MS.gene32427.t1 | MTR_1g026810 | 58.103 | 253 | 76 | 4 | 501 | 724 | 220 | 471 | 1.09e-83 | 274 |
| MS.gene32427.t1 | MTR_1g026810 | 46.667 | 360 | 132 | 5 | 7 | 336 | 1 | 330 | 1.59e-70 | 239 |
| MS.gene32427.t1 | MTR_1g026810 | 58.333 | 252 | 75 | 4 | 501 | 723 | 220 | 470 | 3.33e-83 | 273 |
| MS.gene32427.t1 | MTR_1g026810 | 46.667 | 360 | 132 | 5 | 7 | 336 | 1 | 330 | 2.15e-70 | 239 |
| MS.gene32427.t1 | MTR_1g026790 | 46.400 | 250 | 98 | 3 | 501 | 727 | 294 | 530 | 1.49e-57 | 206 |
| MS.gene32427.t1 | MTR_1g026790 | 34.509 | 397 | 147 | 14 | 1 | 295 | 1 | 386 | 1.86e-25 | 112 |
| MS.gene32427.t1 | MTR_2g010820 | 50.459 | 218 | 92 | 4 | 515 | 727 | 312 | 518 | 3.20e-50 | 185 |
| MS.gene32427.t1 | MTR_2g010820 | 35.013 | 377 | 123 | 13 | 70 | 336 | 10 | 374 | 1.73e-23 | 105 |
| MS.gene32427.t1 | MTR_1g026790 | 42.683 | 246 | 96 | 4 | 501 | 721 | 294 | 519 | 4.26e-46 | 172 |
| MS.gene32427.t1 | MTR_1g026790 | 34.509 | 397 | 147 | 14 | 1 | 295 | 1 | 386 | 1.47e-25 | 112 |
| MS.gene32427.t1 | MTR_1g026760 | 41.667 | 168 | 77 | 5 | 74 | 230 | 35 | 192 | 2.05e-26 | 107 |
| MS.gene32427.t1 | MTR_1g026760 | 52.174 | 69 | 28 | 1 | 1 | 69 | 35 | 98 | 5.37e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 159 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGGACTTATACTCTTTC+TGG | 0.148518 | 1.4:-12656848 | None:intergenic |
| CTTATGATGATTCTCAATTT+AGG | 0.202259 | 1.4:+12656790 | MS.gene32427:CDS |
| AGCTATTTGCATGTTGTCTT+TGG | 0.216465 | 1.4:-12656766 | None:intergenic |
| TCAATTTAGGAGAAGACTTT+TGG | 0.247487 | 1.4:+12656803 | MS.gene32427:CDS |
| GCTATTTGCATGTTGTCTTT+GGG | 0.265774 | 1.4:-12656765 | None:intergenic |
| TATGATCATTTATATCTATT+AGG | 0.273707 | 1.4:-12654913 | None:intergenic |
| GCTTTGTGTGTTTAGTGTTT+TGG | 0.285613 | 1.4:+12656729 | MS.gene32427:intron |
| TGCGATGATTTGTGCAAATA+TGG | 0.289953 | 1.4:+12655090 | MS.gene32427:CDS |
| TTCAGATTACGCTACACTTT+TGG | 0.322176 | 1.4:+12655291 | MS.gene32427:CDS |
| TGATCACAGATTGGTTAATC+TGG | 0.329585 | 1.4:+12655483 | MS.gene32427:CDS |
| ATACCAACAATAAAAGAAAA+AGG | 0.344243 | 1.4:+12654987 | MS.gene32427:CDS |
| GTGCTTCAAACTATCACTTC+TGG | 0.346663 | 1.4:-12655038 | None:intergenic |
| TGTCACATAGTTCGATTAGA+AGG | 0.348397 | 1.4:-12656866 | None:intergenic |
| GTCCTTCAAACTATCATTCC+TGG | 0.353240 | 1.4:-12654834 | None:intergenic |
| AGAACAACTGCGATGATTTG+TGG | 0.376289 | 1.4:+12654878 | MS.gene32427:CDS |
| TTATACTCTTTCTGGTCATA+AGG | 0.379944 | 1.4:-12656840 | None:intergenic |
| TATCGTTAACCTGGCGGTGA+TGG | 0.398546 | 1.4:+12658151 | MS.gene32427:CDS |
| CTCCACCTTGGATGTGTTTG+TGG | 0.409533 | 1.4:-12655728 | None:intergenic |
| CTCCACCTTGGATGTGTTTG+TGG | 0.409663 | 1.4:-12656466 | None:intergenic |
| CTCCACCTTGGATGTGTTTG+TGG | 0.411126 | 1.4:-12655605 | None:intergenic |
| CTCCACCTTGGATGTGTTTG+TGG | 0.411126 | 1.4:-12655974 | None:intergenic |
| CTCCACCTTGGATGTGTTTG+TGG | 0.411126 | 1.4:-12656097 | None:intergenic |
| CTCCACCTTGGATGTGTTTG+TGG | 0.411126 | 1.4:-12656343 | None:intergenic |
| AGGATCATATCGAGGCAAAA+AGG | 0.412630 | 1.4:-12655425 | None:intergenic |
| ATAAATGATCATAAGATTGA+TGG | 0.424214 | 1.4:+12654923 | MS.gene32427:CDS |
| CACATCCAAGGTGGAGGATG+GGG | 0.426751 | 1.4:+12656473 | MS.gene32427:CDS |
| GATGAATCATATATATTTGA+AGG | 0.433710 | 1.4:-12656564 | None:intergenic |
| CTAGTTCCTGTGACGATTGT+TGG | 0.436374 | 1.4:+12656042 | MS.gene32427:CDS |
| TGATGACGATGATGATGAAT+TGG | 0.437875 | 1.4:+12655201 | MS.gene32427:CDS |
| GTTCCTGTGATGATTGTTGA+TGG | 0.443842 | 1.4:+12656414 | MS.gene32427:CDS |
| GATTTCAAAACAGTTACATC+TGG | 0.444085 | 1.4:-12656510 | None:intergenic |
| GTGCTCCTTAGCAATAGCTT+TGG | 0.447833 | 1.4:-12657749 | None:intergenic |
| TCACCGTCAACAATCGTCAT+AGG | 0.452257 | 1.4:-12655679 | None:intergenic |
| ATCGTTAACCTGGCGGTGAT+GGG | 0.461548 | 1.4:+12658152 | MS.gene32427:CDS |
| GACGATTGTTGACGGTGATA+AGG | 0.462535 | 1.4:+12655684 | MS.gene32427:CDS |
| TCATCAGTATGAGAGTCATC+CGG | 0.465141 | 1.4:-12654770 | None:intergenic |
| CACATCCAAGGTGGAGGGTA+GGG | 0.467862 | 1.4:+12655858 | MS.gene32427:CDS |
| CACATCCAAGGTGGAGGGTA+GGG | 0.467862 | 1.4:+12656227 | MS.gene32427:CDS |
| TATTAAGAAGACGGAAGGCC+AGG | 0.468796 | 1.4:+12654816 | MS.gene32427:CDS |
| CTATTTGCATGTTGTCTTTG+GGG | 0.475255 | 1.4:-12656764 | None:intergenic |
| ACACATCCAAGGTGGAGGAT+GGG | 0.479380 | 1.4:+12656472 | MS.gene32427:CDS |
| CTCCACCTTGGATGTGTTCG+TGG | 0.481844 | 1.4:-12655851 | None:intergenic |
| CTCCACCTTGGATGTGTTCG+TGG | 0.481844 | 1.4:-12656220 | None:intergenic |
| ATCTGAATCCACTTCATCAC+TGG | 0.486709 | 1.4:-12655275 | None:intergenic |
| ACGATATGCAACAATTGAGT+TGG | 0.489457 | 1.4:-12658134 | None:intergenic |
| AACACATCCAAGGTGGAGGA+TGG | 0.510664 | 1.4:+12656471 | MS.gene32427:CDS |
| GTTCCTATGACGATTGTTGA+CGG | 0.514132 | 1.4:+12655676 | MS.gene32427:CDS |
| GACGATTGTTGGTGGTGATA+AGG | 0.514683 | 1.4:+12656053 | MS.gene32427:CDS |
| CATCAGTATGAGAGTCATCC+GGG | 0.518594 | 1.4:-12654769 | None:intergenic |
| TGCTTTAATCATGCTTAACC+CGG | 0.522332 | 1.4:+12654751 | MS.gene32427:CDS |
| GATGATTGTTGATGGTGATA+AGG | 0.528205 | 1.4:+12656422 | MS.gene32427:CDS |
| CATTAAAACCCATCACCGCC+AGG | 0.528902 | 1.4:-12658160 | None:intergenic |
| TATATATTTGAAGGAACGAA+AGG | 0.532917 | 1.4:-12656555 | None:intergenic |
| GATCACAGATTGGTTAATCT+GGG | 0.534584 | 1.4:+12655484 | MS.gene32427:CDS |
| GACGATTGTTGACGGTGATA+AGG | 0.535998 | 1.4:+12656176 | MS.gene32427:CDS |
| GACGATTGTTGACGGTGATA+AGG | 0.535998 | 1.4:+12656299 | MS.gene32427:CDS |
| GCCAATACGAAACATGGAAG+GGG | 0.536320 | 1.4:+12656904 | MS.gene32427:CDS |
| GGCCAGGAATGATAGTTTGA+AGG | 0.540132 | 1.4:+12654832 | MS.gene32427:CDS |
| GTCACATAGTTCGATTAGAA+GGG | 0.541022 | 1.4:-12656865 | None:intergenic |
| CAAAACAGTTACATCTGGAT+CGG | 0.549149 | 1.4:-12656505 | None:intergenic |
| GTTCCTGTGACGATTGTTGA+CGG | 0.551067 | 1.4:+12656168 | MS.gene32427:CDS |
| GTTCCTGTGACGATTGTTGA+CGG | 0.551067 | 1.4:+12656291 | MS.gene32427:CDS |
| GATGATTGTTGACGGTGATA+AGG | 0.554365 | 1.4:+12655807 | MS.gene32427:CDS |
| GATGATTGTTGACGGTGATA+AGG | 0.554365 | 1.4:+12655930 | MS.gene32427:CDS |
| ATTGTTGCATATCGTTAACC+TGG | 0.560469 | 1.4:+12658142 | MS.gene32427:CDS |
| CCAGGGTACAATACATGATA+CGG | 0.560803 | 1.4:-12656963 | None:intergenic |
| TGACTCCCTACCCTCCACCT+TGG | 0.563932 | 1.4:-12655863 | None:intergenic |
| TGACTCCCTACCCTCCACCT+TGG | 0.563932 | 1.4:-12656232 | None:intergenic |
| CACGAACACATCCAAGGTGG+AGG | 0.564556 | 1.4:+12655852 | MS.gene32427:CDS |
| CACGAACACATCCAAGGTGG+AGG | 0.564556 | 1.4:+12656221 | MS.gene32427:CDS |
| GTTCCTGTGATGATTGTTGA+CGG | 0.565416 | 1.4:+12655799 | MS.gene32427:CDS |
| GTTCCTGTGATGATTGTTGA+CGG | 0.565416 | 1.4:+12655922 | MS.gene32427:CDS |
| TACAAAGGCTATTAAGAAGA+CGG | 0.573603 | 1.4:+12654807 | MS.gene32427:CDS |
| CACAAACACATCCAAGGTGG+AGG | 0.575903 | 1.4:+12655606 | MS.gene32427:CDS |
| CACAAACACATCCAAGGTGG+AGG | 0.575903 | 1.4:+12655729 | MS.gene32427:CDS |
| CACAAACACATCCAAGGTGG+AGG | 0.575903 | 1.4:+12655975 | MS.gene32427:CDS |
| CACAAACACATCCAAGGTGG+AGG | 0.575903 | 1.4:+12656098 | MS.gene32427:CDS |
| CACAAACACATCCAAGGTGG+AGG | 0.575903 | 1.4:+12656344 | MS.gene32427:CDS |
| ATATATTTGAAGGAACGAAA+GGG | 0.577953 | 1.4:-12656554 | None:intergenic |
| GACGATTGTTGATCGTGATA+AGG | 0.581436 | 1.4:+12655561 | MS.gene32427:CDS |
| ACACATCCAAGGTGGAGGGT+AGG | 0.581454 | 1.4:+12655857 | MS.gene32427:CDS |
| ACACATCCAAGGTGGAGGGT+AGG | 0.581454 | 1.4:+12656226 | MS.gene32427:CDS |
| AACAGTTACATCTGGATCGG+AGG | 0.584068 | 1.4:-12656502 | None:intergenic |
| AAATGAAGATGATCACAGAT+TGG | 0.585753 | 1.4:+12655474 | MS.gene32427:CDS |
| TATCAATGACAATCATCAAG+TGG | 0.587633 | 1.4:+12655387 | MS.gene32427:CDS |
| GTTCCTGTGACGATTGTTGG+TGG | 0.590736 | 1.4:+12656045 | MS.gene32427:CDS |
| TCTATCCAAAGCTATTGCTA+AGG | 0.590759 | 1.4:+12657744 | MS.gene32427:CDS |
| CGACTCACTACCCTCCACCT+TGG | 0.594822 | 1.4:-12655617 | None:intergenic |
| ACAGTTACATCTGGATCGGA+GGG | 0.595932 | 1.4:-12656501 | None:intergenic |
| ACGCCAATACGAAACATGGA+AGG | 0.596682 | 1.4:+12656902 | MS.gene32427:CDS |
| TGGAACGCCAATACGAAACA+TGG | 0.598072 | 1.4:+12656898 | MS.gene32427:CDS |
| GCACTGTCAAATTCAACAGT+AGG | 0.599364 | 1.4:-12655325 | None:intergenic |
| TCACGATCAACAATCGTCAC+AGG | 0.605235 | 1.4:-12655556 | None:intergenic |
| ACATCCAAGGTGGAGGATGG+GGG | 0.608240 | 1.4:+12656474 | MS.gene32427:CDS |
| TCACCATCAACAATCATCAC+AGG | 0.612499 | 1.4:-12656417 | None:intergenic |
| TCACCACCAACAATCGTCAC+AGG | 0.613571 | 1.4:-12656048 | None:intergenic |
| TCACCGTCAACAATCGTCAC+AGG | 0.613571 | 1.4:-12656171 | None:intergenic |
| TCACCGTCAACAATCGTCAC+AGG | 0.613571 | 1.4:-12656294 | None:intergenic |
| TCACCGTCAACAATCATCAC+AGG | 0.615205 | 1.4:-12655802 | None:intergenic |
| TCACCGTCAACAATCATCAC+AGG | 0.615205 | 1.4:-12655925 | None:intergenic |
| CACAAACACATCCAAGGTGG+AGG | 0.617727 | 1.4:+12656467 | MS.gene32427:CDS |
| AGGAGCACAAGAATAAGCGT+AGG | 0.618087 | 1.4:+12657764 | MS.gene32427:CDS |
| TGACTCACTACCCTCCACCT+TGG | 0.620210 | 1.4:-12655740 | None:intergenic |
| TGACTCACTACCCTCCACCT+TGG | 0.620210 | 1.4:-12655986 | None:intergenic |
| TGACTCACTACCCTCCACCT+TGG | 0.620210 | 1.4:-12656109 | None:intergenic |
| TGACTCACTACCCTCCACCT+TGG | 0.620210 | 1.4:-12656355 | None:intergenic |
| CGCCAATACGAAACATGGAA+GGG | 0.626490 | 1.4:+12656903 | MS.gene32427:CDS |
| ATACTGATGATAAAACAGAA+AGG | 0.628327 | 1.4:+12654783 | MS.gene32427:CDS |
| GAATACCACAAACACATCCA+AGG | 0.629121 | 1.4:+12655600 | MS.gene32427:CDS |
| GAATACCACAAACACATCCA+AGG | 0.629121 | 1.4:+12655969 | MS.gene32427:CDS |
| GAATACCACAAACACATCCA+AGG | 0.629121 | 1.4:+12656092 | MS.gene32427:CDS |
| GAATACCACAAACACATCCA+AGG | 0.629121 | 1.4:+12656338 | MS.gene32427:CDS |
| GAATACCACAAACACATCCA+AGG | 0.629121 | 1.4:+12656461 | MS.gene32427:CDS |
| AAGGCTATTAAGAAGACGGA+AGG | 0.630428 | 1.4:+12654811 | MS.gene32427:CDS |
| ACAAACACATCCAAGGTGGA+GGG | 0.632692 | 1.4:+12655607 | MS.gene32427:CDS |
| ACGAACACATCCAAGGTGGA+GGG | 0.632692 | 1.4:+12655853 | MS.gene32427:CDS |
| ACAAACACATCCAAGGTGGA+GGG | 0.632692 | 1.4:+12655976 | MS.gene32427:CDS |
| ACAAACACATCCAAGGTGGA+GGG | 0.632692 | 1.4:+12656099 | MS.gene32427:CDS |
| ACGAACACATCCAAGGTGGA+GGG | 0.632692 | 1.4:+12656222 | MS.gene32427:CDS |
| ACAAACACATCCAAGGTGGA+GGG | 0.632692 | 1.4:+12656345 | MS.gene32427:CDS |
| ATAAAACAGAAAGGTTACAA+AGG | 0.641109 | 1.4:+12654792 | MS.gene32427:CDS |
| GGAGCACAAGAATAAGCGTA+GGG | 0.642841 | 1.4:+12657765 | MS.gene32427:CDS |
| GTGGAGGGTAGTGAGTCGCT+AGG | 0.644159 | 1.4:+12655622 | MS.gene32427:CDS |
| CCGTATCATGTATTGTACCC+TGG | 0.646377 | 1.4:+12656963 | MS.gene32427:CDS |
| GAATTCCACAAACACATCCA+AGG | 0.648287 | 1.4:+12655723 | MS.gene32427:CDS |
| GAATACCACGAACACATCCA+AGG | 0.648592 | 1.4:+12655846 | MS.gene32427:CDS |
| GAATACCACGAACACATCCA+AGG | 0.648592 | 1.4:+12656215 | MS.gene32427:CDS |
| GTGGAGGGTAGGGAGTCACT+AGG | 0.653627 | 1.4:+12655868 | MS.gene32427:CDS |
| GTGGAGGGTAGGGAGTCACT+AGG | 0.653627 | 1.4:+12656237 | MS.gene32427:CDS |
| ACATCATCGCTAATATGACC+AGG | 0.654247 | 1.4:-12655445 | None:intergenic |
| ACAAACACATCCAAGGTGGA+GGG | 0.659544 | 1.4:+12655730 | MS.gene32427:CDS |
| GTTGCATATCGTTAACCTGG+CGG | 0.670736 | 1.4:+12658145 | MS.gene32427:CDS |
| GGTCATATTAGCGATGATGT+TGG | 0.671445 | 1.4:+12655448 | MS.gene32427:CDS |
| AAGGCTATCAAGAAGACAGG+AGG | 0.672323 | 1.4:+12655015 | MS.gene32427:CDS |
| GTGGAGGGTAGTGAGTCACT+AGG | 0.679528 | 1.4:+12655745 | MS.gene32427:CDS |
| GTGGAGGGTAGTGAGTCACT+AGG | 0.679528 | 1.4:+12655991 | MS.gene32427:CDS |
| GTGGAGGGTAGTGAGTCACT+AGG | 0.679528 | 1.4:+12656114 | MS.gene32427:CDS |
| GTGGAGGGTAGTGAGTCACT+AGG | 0.679528 | 1.4:+12656360 | MS.gene32427:CDS |
| GGTGATAAGGAGTATATGCG+TGG | 0.687012 | 1.4:+12655697 | MS.gene32427:CDS |
| GGTGATAAGGAGTATATGCG+TGG | 0.687012 | 1.4:+12655820 | MS.gene32427:CDS |
| GGTGATAAGGAGTATATGCG+TGG | 0.687012 | 1.4:+12656189 | MS.gene32427:CDS |
| CCAATACGAAACATGGAAGG+GGG | 0.690311 | 1.4:+12656905 | MS.gene32427:CDS |
| ATATGACCAGGATCATATCG+AGG | 0.702493 | 1.4:-12655433 | None:intergenic |
| TTCCACAAACACATCCAAGG+TGG | 0.704424 | 1.4:+12655726 | MS.gene32427:CDS |
| TACCACAAACACATCCAAGG+TGG | 0.705342 | 1.4:+12655603 | MS.gene32427:CDS |
| TACCACAAACACATCCAAGG+TGG | 0.705342 | 1.4:+12655972 | MS.gene32427:CDS |
| TACCACAAACACATCCAAGG+TGG | 0.705342 | 1.4:+12656095 | MS.gene32427:CDS |
| TACCACAAACACATCCAAGG+TGG | 0.705342 | 1.4:+12656341 | MS.gene32427:CDS |
| TACCACAAACACATCCAAGG+TGG | 0.705342 | 1.4:+12656464 | MS.gene32427:CDS |
| TTTGAATCATATGACACTGA+AGG | 0.718222 | 1.4:+12656930 | MS.gene32427:CDS |
| TACCACGAACACATCCAAGG+TGG | 0.721036 | 1.4:+12655849 | MS.gene32427:CDS |
| TACCACGAACACATCCAAGG+TGG | 0.721036 | 1.4:+12656218 | MS.gene32427:CDS |
| GACAGTGCTAGTAATCGTCG+CGG | 0.728262 | 1.4:+12655340 | MS.gene32427:CDS |
| GGTGATAAGGAGTATGTGTG+TGG | 0.733498 | 1.4:+12655943 | MS.gene32427:CDS |
| GGTGATAAGGAGTTTGTGTG+TGG | 0.733498 | 1.4:+12656312 | MS.gene32427:CDS |
| GGTGATAAGGAGTATATGCG+TGG | 0.735259 | 1.4:+12656435 | MS.gene32427:CDS |
| AATCTGGGAAGTGAGTCACT+AGG | 0.740246 | 1.4:+12655499 | MS.gene32427:CDS |
| CGTGATAAGGAGTATGTGCG+TGG | 0.740725 | 1.4:+12655574 | MS.gene32427:CDS |
| GGTGATAAGGAGTATATGCG+TGG | 0.748740 | 1.4:+12656066 | MS.gene32427:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAGTAATATTTTTCAAA+TGG | + | chr1.4:12656618-12656637 | MS.gene32427:intron | 10.0% |
| !! | ATAAAAGAAAAAGGTTAAAA+AGG | + | chr1.4:12654996-12655015 | MS.gene32427:CDS | 15.0% |
| !! | TATGATCATTTATATCTATT+AGG | - | chr1.4:12654916-12654935 | None:intergenic | 15.0% |
| !! | TTATAAAATTATTGCTTCAA+AGG | - | chr1.4:12658069-12658088 | None:intergenic | 15.0% |
| !!! | AATTTTATAAACTATGCTTT+AGG | + | chr1.4:12658079-12658098 | MS.gene32427:intron | 15.0% |
| !!! | TGTTTGTTAAAATTATAAAC+TGG | + | chr1.4:12657276-12657295 | MS.gene32427:intron | 15.0% |
| !! | AAAGAATAAAAAGGATCATA+CGG | + | chr1.4:12655120-12655139 | MS.gene32427:CDS | 20.0% |
| !! | AAATATTCTTCAACACATTA+AGG | - | chr1.4:12657872-12657891 | None:intergenic | 20.0% |
| !! | AATATGCAATCAAAATTCAA+TGG | + | chr1.4:12657061-12657080 | MS.gene32427:intron | 20.0% |
| !! | ATAAATGATCATAAGATTGA+TGG | + | chr1.4:12654923-12654942 | MS.gene32427:CDS | 20.0% |
| !! | ATACCAACAATAAAAGAAAA+AGG | + | chr1.4:12654987-12655006 | MS.gene32427:CDS | 20.0% |
| !! | GATGAATCATATATATTTGA+AGG | - | chr1.4:12656567-12656586 | None:intergenic | 20.0% |
| !! | TAAAGTCTGTAAAAAAAAGT+TGG | + | chr1.4:12655159-12655178 | MS.gene32427:CDS | 20.0% |
| !! | TCAAAACAAATATTTGATAG+AGG | - | chr1.4:12657709-12657728 | None:intergenic | 20.0% |
| !! | TCTGTCTATATTATAATTTG+TGG | + | chr1.4:12657589-12657608 | MS.gene32427:intron | 20.0% |
| !! | TTAGAACAATTGAGAAAATA+TGG | - | chr1.4:12656994-12657013 | None:intergenic | 20.0% |
| !!! | CTGTGTTAAATTTTAATGTT+GGG | + | chr1.4:12657304-12657323 | MS.gene32427:intron | 20.0% |
| !!! | GGATGTTTTAAAGAATAAAA+AGG | + | chr1.4:12655111-12655130 | MS.gene32427:CDS | 20.0% |
| !!! | GTATTTTCATCATATTTTGA+TGG | + | chr1.4:12657246-12657265 | MS.gene32427:intron | 20.0% |
| !!! | TAACCTTTTTCTTTTATTGT+TGG | - | chr1.4:12654993-12655012 | None:intergenic | 20.0% |
| !!! | TCTGTGTTAAATTTTAATGT+TGG | + | chr1.4:12657303-12657322 | MS.gene32427:intron | 20.0% |
| !!! | TGAATTTTGATTGCATATTT+AGG | - | chr1.4:12657060-12657079 | None:intergenic | 20.0% |
| !!! | TGTGTTAAATTTTAATGTTG+GGG | + | chr1.4:12657305-12657324 | MS.gene32427:intron | 20.0% |
| !!! | TTTCTTTTATTGTTGGTATT+AGG | - | chr1.4:12654986-12655005 | None:intergenic | 20.0% |
| ! | ATAAAACAGAAAGGTTACAA+AGG | + | chr1.4:12654792-12654811 | MS.gene32427:CDS | 25.0% |
| ! | ATACTGATGATAAAACAGAA+AGG | + | chr1.4:12654783-12654802 | MS.gene32427:CDS | 25.0% |
| ! | ATATATTTGAAGGAACGAAA+GGG | - | chr1.4:12656557-12656576 | None:intergenic | 25.0% |
| ! | CTTATGATGATTCTCAATTT+AGG | + | chr1.4:12656790-12656809 | MS.gene32427:CDS | 25.0% |
| ! | TATATATTTGAAGGAACGAA+AGG | - | chr1.4:12656558-12656577 | None:intergenic | 25.0% |
| ! | TGATGAAAATACAAATCAAC+AGG | - | chr1.4:12657238-12657257 | None:intergenic | 25.0% |
| ! | TTGTTGAATAATGTGCATAT+TGG | - | chr1.4:12656648-12656667 | None:intergenic | 25.0% |
| ! | TTTATTTAATGCTAGTAGTG+AGG | - | chr1.4:12657099-12657118 | None:intergenic | 25.0% |
| !! | AAAAAAGTTGGCTTCATATA+CGG | + | chr1.4:12655171-12655190 | MS.gene32427:CDS | 25.0% |
| !! | CATATGATTCAACTATGTTT+TGG | - | chr1.4:12657154-12657173 | None:intergenic | 25.0% |
| !! | GAATCATATGATTTAAGATG+AGG | + | chr1.4:12657164-12657183 | MS.gene32427:intron | 25.0% |
| !!! | GTGTTAAATTTTAATGTTGG+GGG | + | chr1.4:12657306-12657325 | MS.gene32427:intron | 25.0% |
| !!! | GTTAATTTGTGCAAGTTTTT+TGG | + | chr1.4:12657611-12657630 | MS.gene32427:intron | 25.0% |
| !!! | TGTTAAATTTTAATGTTGGG+GGG | + | chr1.4:12657307-12657326 | MS.gene32427:intron | 25.0% |
| AAATGAAGATGATCACAGAT+TGG | + | chr1.4:12655474-12655493 | MS.gene32427:CDS | 30.0% | |
| AAGCAATGATTTGATAGGAA+AGG | + | chr1.4:12657901-12657920 | MS.gene32427:intron | 30.0% | |
| AGCAATGATTTGATAGGAAA+GGG | + | chr1.4:12657902-12657921 | MS.gene32427:intron | 30.0% | |
| ATCTGAATATATGACTGACT+AGG | + | chr1.4:12657431-12657450 | MS.gene32427:intron | 30.0% | |
| GATTTCAAAACAGTTACATC+TGG | - | chr1.4:12656513-12656532 | None:intergenic | 30.0% | |
| GCAAACTACATTTATTCATG+AGG | - | chr1.4:12657382-12657401 | None:intergenic | 30.0% | |
| TACAAAGGCTATTAAGAAGA+CGG | + | chr1.4:12654807-12654826 | MS.gene32427:CDS | 30.0% | |
| TATATGCTCAATCTGATTTC+TGG | + | chr1.4:12657683-12657702 | MS.gene32427:intron | 30.0% | |
| TATCAATGACAATCATCAAG+TGG | + | chr1.4:12655387-12655406 | MS.gene32427:CDS | 30.0% | |
| TGATTACTAATCATCACTGT+AGG | + | chr1.4:12657536-12657555 | MS.gene32427:intron | 30.0% | |
| TGCAAGAGATTTAATGAACT+GGG | + | chr1.4:12658038-12658057 | MS.gene32427:intron | 30.0% | |
| TTGCAAGAGATTTAATGAAC+TGG | + | chr1.4:12658037-12658056 | MS.gene32427:intron | 30.0% | |
| TTTGAATCATATGACACTGA+AGG | + | chr1.4:12656930-12656949 | MS.gene32427:CDS | 30.0% | |
| ! | AAAAAGTTGGCTTCATATAC+GGG | + | chr1.4:12655172-12655191 | MS.gene32427:CDS | 30.0% |
| ! | TATGATTTAAGATGAGGAGA+AGG | + | chr1.4:12657170-12657189 | MS.gene32427:intron | 30.0% |
| ! | TCAATTTAGGAGAAGACTTT+TGG | + | chr1.4:12656803-12656822 | MS.gene32427:CDS | 30.0% |
| ! | TTATACTCTTTCTGGTCATA+AGG | - | chr1.4:12656843-12656862 | None:intergenic | 30.0% |
| !! | AAAGGGTTAGCTTCAAAAAT+TGG | - | chr1.4:12656540-12656559 | None:intergenic | 30.0% |
| !! | GGTTTTAATGACTTCAAATC+TGG | + | chr1.4:12658173-12658192 | MS.gene32427:CDS | 30.0% |
| !!! | AGTTTTTTGGTAGCTTCTAT+TGG | + | chr1.4:12657624-12657643 | MS.gene32427:intron | 30.0% |
| !!! | TGATTCAACTATGTTTTGGT+TGG | - | chr1.4:12657150-12657169 | None:intergenic | 30.0% |
| AAAAAGGCTATCAAGAAGAC+AGG | + | chr1.4:12655012-12655031 | MS.gene32427:CDS | 35.0% | |
| AAGCATGTTTGACAATTCCT+TGG | + | chr1.4:12657999-12658018 | MS.gene32427:intron | 35.0% | |
| AATCAACAGGAGATAGTTTC+AGG | - | chr1.4:12657225-12657244 | None:intergenic | 35.0% | |
| ACGATATGCAACAATTGAGT+TGG | - | chr1.4:12658137-12658156 | None:intergenic | 35.0% | |
| ACTATGTGACAAAAAGCAAC+TGG | + | chr1.4:12656878-12656897 | MS.gene32427:CDS | 35.0% | |
| AGCTATTTGCATGTTGTCTT+TGG | - | chr1.4:12656769-12656788 | None:intergenic | 35.0% | |
| ATTAAATCTCTTGCAATCGC+AGG | - | chr1.4:12658033-12658052 | None:intergenic | 35.0% | |
| ATTGTTGCATATCGTTAACC+TGG | + | chr1.4:12658142-12658161 | MS.gene32427:CDS | 35.0% | |
| CAAAACAGTTACATCTGGAT+CGG | - | chr1.4:12656508-12656527 | None:intergenic | 35.0% | |
| CAATGATTTGATAGGAAAGG+GGG | + | chr1.4:12657904-12657923 | MS.gene32427:intron | 35.0% | |
| CTATTTGCATGTTGTCTTTG+GGG | - | chr1.4:12656767-12656786 | None:intergenic | 35.0% | |
| CTCAATTGTTCTAACTTCTC+AGG | + | chr1.4:12657000-12657019 | MS.gene32427:intron | 35.0% | |
| GCAATGATTTGATAGGAAAG+GGG | + | chr1.4:12657903-12657922 | MS.gene32427:intron | 35.0% | |
| GCTATTTGCATGTTGTCTTT+GGG | - | chr1.4:12656768-12656787 | None:intergenic | 35.0% | |
| GTCACATAGTTCGATTAGAA+GGG | - | chr1.4:12656868-12656887 | None:intergenic | 35.0% | |
| TACTAATCATCACTGTAGGT+TGG | + | chr1.4:12657540-12657559 | MS.gene32427:intron | 35.0% | |
| TCGTATGGTAGCATAAAGTT+TGG | + | chr1.4:12657033-12657052 | MS.gene32427:intron | 35.0% | |
| TCTATCCAAAGCTATTGCTA+AGG | + | chr1.4:12657744-12657763 | MS.gene32427:CDS | 35.0% | |
| TGCTGAAGCAATGATTTGAT+AGG | + | chr1.4:12657896-12657915 | MS.gene32427:intron | 35.0% | |
| TGCTTTAATCATGCTTAACC+CGG | + | chr1.4:12654751-12654770 | MS.gene32427:CDS | 35.0% | |
| TGTCACATAGTTCGATTAGA+AGG | - | chr1.4:12656869-12656888 | None:intergenic | 35.0% | |
| TTAAATCTCTTGCAATCGCA+GGG | - | chr1.4:12658032-12658051 | None:intergenic | 35.0% | |
| TTATGCTACCATACGAAAGA+AGG | - | chr1.4:12657029-12657048 | None:intergenic | 35.0% | |
| ! | CTTTGATTTCTCTGTAGTCA+AGG | + | chr1.4:12657463-12657482 | MS.gene32427:intron | 35.0% |
| ! | GATCACAGATTGGTTAATCT+GGG | + | chr1.4:12655484-12655503 | MS.gene32427:CDS | 35.0% |
| ! | GCTTTGTGTGTTTAGTGTTT+TGG | + | chr1.4:12656729-12656748 | MS.gene32427:intron | 35.0% |
| ! | TGATCACAGATTGGTTAATC+TGG | + | chr1.4:12655483-12655502 | MS.gene32427:CDS | 35.0% |
| ! | TGATGACGATGATGATGAAT+TGG | + | chr1.4:12655201-12655220 | MS.gene32427:CDS | 35.0% |
| ! | TGCGATGATTTGTGCAAATA+TGG | + | chr1.4:12655090-12655109 | MS.gene32427:CDS | 35.0% |
| ! | TTCAGATTACGCTACACTTT+TGG | + | chr1.4:12655291-12655310 | MS.gene32427:CDS | 35.0% |
| ! | TTCATGCTACCTTTTAAGCA+CGG | + | chr1.4:12657489-12657508 | MS.gene32427:intron | 35.0% |
| !! | GATGATTGTTGATGGTGATA+AGG | + | chr1.4:12656422-12656441 | MS.gene32427:CDS | 35.0% |
| !! | TCACTGGTGTTTTTGTTATC+AGG | - | chr1.4:12655262-12655281 | None:intergenic | 35.0% |
| !!! | AGAGTTCTTGTTTTGTGAGT+AGG | + | chr1.4:12657939-12657958 | MS.gene32427:intron | 35.0% |
| !!! | TTTTGTGAGTAGGAGGTATT+AGG | + | chr1.4:12657949-12657968 | MS.gene32427:intron | 35.0% |
| AAACCCTCACTTGATGTGTT+GGG | + | chr1.4:12657116-12657135 | MS.gene32427:intron | 40.0% | |
| AAGGCTATTAAGAAGACGGA+AGG | + | chr1.4:12654811-12654830 | MS.gene32427:CDS | 40.0% | |
| ACATCATCGCTAATATGACC+AGG | - | chr1.4:12655448-12655467 | None:intergenic | 40.0% | |
| AGAACAACTGCGATGATTTG+TGG | + | chr1.4:12654878-12654897 | MS.gene32427:CDS | 40.0% | |
| AGGATCATATCGAGGCAAAA+AGG | - | chr1.4:12655428-12655447 | None:intergenic | 40.0% | |
| ATATGACCAGGATCATATCG+AGG | - | chr1.4:12655436-12655455 | None:intergenic | 40.0% | |
| ATCATGTATTGTACCCTGGT+AGG | + | chr1.4:12656967-12656986 | MS.gene32427:intron | 40.0% | |
| ATCTGAATCCACTTCATCAC+TGG | - | chr1.4:12655278-12655297 | None:intergenic | 40.0% | |
| CAAAAACACCAGTGATGAAG+TGG | + | chr1.4:12655267-12655286 | MS.gene32427:CDS | 40.0% | |
| CATATCGAGGCAAAAAGGAT+TGG | - | chr1.4:12655423-12655442 | None:intergenic | 40.0% | |
| CCAGGGTACAATACATGATA+CGG | - | chr1.4:12656966-12656985 | None:intergenic | 40.0% | |
| GAAGGGACTTATACTCTTTC+TGG | - | chr1.4:12656851-12656870 | None:intergenic | 40.0% | |
| GAATACCACAAACACATCCA+AGG | + | chr1.4:12655600-12655619 | MS.gene32427:CDS | 40.0% | |
| GAATTCCACAAACACATCCA+AGG | + | chr1.4:12655723-12655742 | MS.gene32427:CDS | 40.0% | |
| GACGATTGTTGATCGTGATA+AGG | + | chr1.4:12655561-12655580 | MS.gene32427:CDS | 40.0% | |
| GAGAAAATATGGACCTACCA+GGG | - | chr1.4:12656983-12657002 | None:intergenic | 40.0% | |
| GATGATTGTTGACGGTGATA+AGG | + | chr1.4:12655807-12655826 | MS.gene32427:CDS | 40.0% | |
| GCACTGTCAAATTCAACAGT+AGG | - | chr1.4:12655328-12655347 | None:intergenic | 40.0% | |
| GGTCATATTAGCGATGATGT+TGG | + | chr1.4:12655448-12655467 | MS.gene32427:CDS | 40.0% | |
| GTCCTTCAAACTATCATTCC+TGG | - | chr1.4:12654837-12654856 | None:intergenic | 40.0% | |
| GTGCTTCAAACTATCACTTC+TGG | - | chr1.4:12655041-12655060 | None:intergenic | 40.0% | |
| GTTCCTATGACGATTGTTGA+CGG | + | chr1.4:12655676-12655695 | MS.gene32427:CDS | 40.0% | |
| GTTCCTGTGATGATTGTTGA+CGG | + | chr1.4:12655799-12655818 | MS.gene32427:CDS | 40.0% | |
| GTTCCTGTGATGATTGTTGA+TGG | + | chr1.4:12655799-12655818 | MS.gene32427:CDS | 40.0% | |
| TAAACCCTCACTTGATGTGT+TGG | + | chr1.4:12657115-12657134 | MS.gene32427:intron | 40.0% | |
| TCACCATCAACAATCATCAC+AGG | - | chr1.4:12656420-12656439 | None:intergenic | 40.0% | |
| TCAGGTTTCCTTCTTTCGTA+TGG | + | chr1.4:12657018-12657037 | MS.gene32427:intron | 40.0% | |
| TCATCAGTATGAGAGTCATC+CGG | - | chr1.4:12654773-12654792 | None:intergenic | 40.0% | |
| TCTACATTACTCTGACGCAT+TGG | - | chr1.4:12657358-12657377 | None:intergenic | 40.0% | |
| TGAGAAAATATGGACCTACC+AGG | - | chr1.4:12656984-12657003 | None:intergenic | 40.0% | |
| ! | TCATGCTACCTTTTAAGCAC+GGG | + | chr1.4:12657490-12657509 | MS.gene32427:intron | 40.0% |
| ! | TTTTTGCCTCGATATGATCC+TGG | + | chr1.4:12655427-12655446 | MS.gene32427:CDS | 40.0% |
| !! | ATTACTCTGACGCATTGGTT+TGG | - | chr1.4:12657353-12657372 | None:intergenic | 40.0% |
| !!! | GACTTTTGGAACATCTTGAC+AGG | + | chr1.4:12656817-12656836 | MS.gene32427:CDS | 40.0% |
| !!! | GTTCTTGTTTTGTGAGTAGG+AGG | + | chr1.4:12657942-12657961 | MS.gene32427:intron | 40.0% |
| AACAGTTACATCTGGATCGG+AGG | - | chr1.4:12656505-12656524 | None:intergenic | 45.0% | |
| AAGGCTATCAAGAAGACAGG+AGG | + | chr1.4:12655015-12655034 | MS.gene32427:CDS | 45.0% | |
| AATCGCAGGGTTCAAATCCA+AGG | - | chr1.4:12658019-12658038 | None:intergenic | 45.0% | |
| AATCTGGGAAGTGAGTCACT+AGG | + | chr1.4:12655499-12655518 | MS.gene32427:CDS | 45.0% | |
| ACAAACACATCCAAGGTGGA+GGG | + | chr1.4:12655607-12655626 | MS.gene32427:CDS | 45.0% | |
| ACAGTTACATCTGGATCGGA+GGG | - | chr1.4:12656504-12656523 | None:intergenic | 45.0% | |
| ACGCCAATACGAAACATGGA+AGG | + | chr1.4:12656902-12656921 | MS.gene32427:CDS | 45.0% | |
| AGAATGAGCCCGTGCTTAAA+AGG | - | chr1.4:12657501-12657520 | None:intergenic | 45.0% | |
| CATCAGTATGAGAGTCATCC+GGG | - | chr1.4:12654772-12654791 | None:intergenic | 45.0% | |
| CCAATACGAAACATGGAAGG+GGG | + | chr1.4:12656905-12656924 | MS.gene32427:CDS | 45.0% | |
| CCGTATCATGTATTGTACCC+TGG | + | chr1.4:12656963-12656982 | MS.gene32427:CDS | 45.0% | |
| CGCCAATACGAAACATGGAA+GGG | + | chr1.4:12656903-12656922 | MS.gene32427:CDS | 45.0% | |
| CGTCGCGGTAGTTCAAAAAT+TGG | + | chr1.4:12655355-12655374 | MS.gene32427:CDS | 45.0% | |
| CTAGTTCCTGTGACGATTGT+TGG | + | chr1.4:12655550-12655569 | MS.gene32427:CDS | 45.0% | |
| GAATACCACGAACACATCCA+AGG | + | chr1.4:12655846-12655865 | MS.gene32427:CDS | 45.0% | |
| GACGATTGTTGACGGTGATA+AGG | + | chr1.4:12655684-12655703 | MS.gene32427:CDS | 45.0% | |
| GCCAATACGAAACATGGAAG+GGG | + | chr1.4:12656904-12656923 | MS.gene32427:CDS | 45.0% | |
| GGAGCACAAGAATAAGCGTA+GGG | + | chr1.4:12657765-12657784 | MS.gene32427:CDS | 45.0% | |
| GGCCAGGAATGATAGTTTGA+AGG | + | chr1.4:12654832-12654851 | MS.gene32427:CDS | 45.0% | |
| GGTGATAAGGAGTTTGTGTG+TGG | + | chr1.4:12656312-12656331 | MS.gene32427:CDS | 45.0% | |
| GTGCTCCTTAGCAATAGCTT+TGG | - | chr1.4:12657752-12657771 | None:intergenic | 45.0% | |
| GTTCCTGTGACGATTGTTGA+CGG | + | chr1.4:12655553-12655572 | MS.gene32427:CDS | 45.0% | |
| GTTGCATATCGTTAACCTGG+CGG | + | chr1.4:12658145-12658164 | MS.gene32427:CDS | 45.0% | |
| TACCACAAACACATCCAAGG+TGG | + | chr1.4:12655603-12655622 | MS.gene32427:CDS | 45.0% | |
| TATTAAGAAGACGGAAGGCC+AGG | + | chr1.4:12654816-12654835 | MS.gene32427:CDS | 45.0% | |
| TCACCGTCAACAATCATCAC+AGG | - | chr1.4:12655805-12655824 | None:intergenic | 45.0% | |
| TCACCGTCAACAATCGTCAT+AGG | - | chr1.4:12655682-12655701 | None:intergenic | 45.0% | |
| TCACGATCAACAATCGTCAC+AGG | - | chr1.4:12655559-12655578 | None:intergenic | 45.0% | |
| TGGAACGCCAATACGAAACA+TGG | + | chr1.4:12656898-12656917 | MS.gene32427:CDS | 45.0% | |
| TTCCACAAACACATCCAAGG+TGG | + | chr1.4:12655726-12655745 | MS.gene32427:CDS | 45.0% | |
| ! | AGGAGCACAAGAATAAGCGT+AGG | + | chr1.4:12657764-12657783 | MS.gene32427:CDS | 45.0% |
| ! | GGTGATAAGGAGTATATGCG+TGG | + | chr1.4:12655697-12655716 | MS.gene32427:CDS | 45.0% |
| ! | GGTGATAAGGAGTATGTGTG+TGG | + | chr1.4:12655943-12655962 | MS.gene32427:CDS | 45.0% |
| !! | GACGATTGTTGGTGGTGATA+AGG | + | chr1.4:12656053-12656072 | MS.gene32427:CDS | 45.0% |
| !!! | AGGGTTTTGTTTCTCTTGCG+TGG | + | chr1.4:12657784-12657803 | MS.gene32427:CDS | 45.0% |
| AACACATCCAAGGTGGAGGA+TGG | + | chr1.4:12656471-12656490 | MS.gene32427:CDS | 50.0% | |
| ACACATCCAAGGTGGAGGAT+GGG | + | chr1.4:12656472-12656491 | MS.gene32427:CDS | 50.0% | |
| ACGAACACATCCAAGGTGGA+GGG | + | chr1.4:12655853-12655872 | MS.gene32427:CDS | 50.0% | |
| ATCGTTAACCTGGCGGTGAT+GGG | + | chr1.4:12658152-12658171 | MS.gene32427:CDS | 50.0% | |
| CACAAACACATCCAAGGTGG+AGG | + | chr1.4:12655606-12655625 | MS.gene32427:CDS | 50.0% | |
| CATTAAAACCCATCACCGCC+AGG | - | chr1.4:12658163-12658182 | None:intergenic | 50.0% | |
| CCACCCAACACATCAAGTGA+GGG | - | chr1.4:12657122-12657141 | None:intergenic | 50.0% | |
| CCCCCTTCCATGTTTCGTAT+TGG | - | chr1.4:12656908-12656927 | None:intergenic | 50.0% | |
| CCTCACTTGATGTGTTGGGT+GGG | + | chr1.4:12657120-12657139 | MS.gene32427:intron | 50.0% | |
| CTCCACCTTGGATGTGTTTG+TGG | - | chr1.4:12655608-12655627 | None:intergenic | 50.0% | |
| GACAGTGCTAGTAATCGTCG+CGG | + | chr1.4:12655340-12655359 | MS.gene32427:CDS | 50.0% | |
| GTTCCTGTGACGATTGTTGG+TGG | + | chr1.4:12656045-12656064 | MS.gene32427:CDS | 50.0% | |
| TACCACGAACACATCCAAGG+TGG | + | chr1.4:12655849-12655868 | MS.gene32427:CDS | 50.0% | |
| TATCGTTAACCTGGCGGTGA+TGG | + | chr1.4:12658151-12658170 | MS.gene32427:CDS | 50.0% | |
| TCACCACCAACAATCGTCAC+AGG | - | chr1.4:12656051-12656070 | None:intergenic | 50.0% | |
| TCACCGTCAACAATCGTCAC+AGG | - | chr1.4:12656174-12656193 | None:intergenic | 50.0% | |
| ! | CGTGATAAGGAGTATGTGCG+TGG | + | chr1.4:12655574-12655593 | MS.gene32427:CDS | 50.0% |
| ACACATCCAAGGTGGAGGGT+AGG | + | chr1.4:12655611-12655630 | MS.gene32427:CDS | 55.0% | |
| ACATCCAAGGTGGAGGATGG+GGG | + | chr1.4:12656474-12656493 | MS.gene32427:CDS | 55.0% | |
| ATTACCCCCATCCTCCACCT+TGG | - | chr1.4:12656481-12656500 | None:intergenic | 55.0% | |
| CACATCCAAGGTGGAGGATG+GGG | + | chr1.4:12656473-12656492 | MS.gene32427:CDS | 55.0% | |
| CACATCCAAGGTGGAGGGTA+GGG | + | chr1.4:12655612-12655631 | MS.gene32427:CDS | 55.0% | |
| CACGAACACATCCAAGGTGG+AGG | + | chr1.4:12655852-12655871 | MS.gene32427:CDS | 55.0% | |
| CACTTGATGTGTTGGGTGGG+TGG | + | chr1.4:12657123-12657142 | MS.gene32427:intron | 55.0% | |
| CCCACCCAACACATCAAGTG+AGG | - | chr1.4:12657123-12657142 | None:intergenic | 55.0% | |
| CCCTCACTTGATGTGTTGGG+TGG | + | chr1.4:12657119-12657138 | MS.gene32427:intron | 55.0% | |
| CTCCACCTTGGATGTGTTCG+TGG | - | chr1.4:12655854-12655873 | None:intergenic | 55.0% | |
| GTGGAGGGTAGTGAGTCACT+AGG | + | chr1.4:12655745-12655764 | MS.gene32427:CDS | 55.0% | |
| TGACTCACTACCCTCCACCT+TGG | - | chr1.4:12655743-12655762 | None:intergenic | 55.0% | |
| CGACTCACTACCCTCCACCT+TGG | - | chr1.4:12655620-12655639 | None:intergenic | 60.0% | |
| GTGGAGGGTAGGGAGTCACT+AGG | + | chr1.4:12655868-12655887 | MS.gene32427:CDS | 60.0% | |
| GTGGAGGGTAGTGAGTCGCT+AGG | + | chr1.4:12655622-12655641 | MS.gene32427:CDS | 60.0% | |
| TGACTCCCTACCCTCCACCT+TGG | - | chr1.4:12655866-12655885 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 12654743 | 12658214 | 12654743 | ID=MS.gene32427 |
| chr1.4 | mRNA | 12654743 | 12658214 | 12654743 | ID=MS.gene32427.t1;Parent=MS.gene32427 |
| chr1.4 | exon | 12654743 | 12656587 | 12654743 | ID=MS.gene32427.t1.exon1;Parent=MS.gene32427.t1 |
| chr1.4 | CDS | 12654743 | 12656587 | 12654743 | ID=cds.MS.gene32427.t1;Parent=MS.gene32427.t1 |
| chr1.4 | exon | 12656744 | 12656984 | 12656744 | ID=MS.gene32427.t1.exon2;Parent=MS.gene32427.t1 |
| chr1.4 | CDS | 12656744 | 12656984 | 12656744 | ID=cds.MS.gene32427.t1;Parent=MS.gene32427.t1 |
| chr1.4 | exon | 12657743 | 12657825 | 12657743 | ID=MS.gene32427.t1.exon3;Parent=MS.gene32427.t1 |
| chr1.4 | CDS | 12657743 | 12657825 | 12657743 | ID=cds.MS.gene32427.t1;Parent=MS.gene32427.t1 |
| chr1.4 | exon | 12658101 | 12658214 | 12658101 | ID=MS.gene32427.t1.exon4;Parent=MS.gene32427.t1 |
| chr1.4 | CDS | 12658101 | 12658214 | 12658101 | ID=cds.MS.gene32427.t1;Parent=MS.gene32427.t1 |
| Gene Sequence |
| Protein sequence |
