Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32563.t1 | XP_003616407.1 | 99.3 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 2.00E-81 | 311.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32563.t1 | Q9M2T2 | 49.4 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 2.1e-39 | 163.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32563.t1 | G7KBR2 | 99.3 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 1.4e-81 | 311.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052533 | MS.gene32563 | 0.809668 | 1.69E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene32563 | 0.800618 | 1.32E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene32563 | 0.807639 | 4.58E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene32563 | 0.805212 | 1.49E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene32563 | 0.824526 | 7.70E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32563.t1 | MTR_5g079880 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 6.90e-112 | 314 |
| MS.gene32563.t1 | MTR_5g079890 | 59.615 | 156 | 60 | 3 | 1 | 153 | 1 | 156 | 8.82e-57 | 175 |
| MS.gene32563.t1 | MTR_5g079890 | 60.870 | 138 | 52 | 2 | 1 | 136 | 1 | 138 | 1.25e-50 | 159 |
| MS.gene32563.t1 | MTR_8g032320 | 40.645 | 155 | 77 | 4 | 1 | 151 | 1 | 144 | 1.34e-36 | 123 |
| MS.gene32563.t1 | MTR_8g032300 | 41.290 | 155 | 76 | 5 | 1 | 151 | 1 | 144 | 3.76e-36 | 122 |
| MS.gene32563.t1 | MTR_1g008950 | 42.143 | 140 | 70 | 3 | 1 | 140 | 1 | 129 | 2.62e-33 | 114 |
| MS.gene32563.t1 | MTR_8g030870 | 34.043 | 141 | 92 | 1 | 1 | 140 | 1 | 141 | 6.11e-24 | 92.4 |
| MS.gene32563.t1 | MTR_7g075960 | 49.123 | 57 | 25 | 1 | 25 | 81 | 1 | 53 | 1.74e-13 | 62.0 |
| MS.gene32563.t1 | MTR_5g004800 | 28.571 | 105 | 71 | 1 | 6 | 110 | 15 | 115 | 2.12e-12 | 62.8 |
| MS.gene32563.t1 | MTR_5g004870 | 25.385 | 130 | 86 | 2 | 6 | 135 | 11 | 129 | 4.02e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32563.t1 | AT3G55470 | 49.020 | 153 | 77 | 1 | 1 | 152 | 1 | 153 | 2.09e-53 | 166 |
| MS.gene32563.t1 | AT3G55470 | 49.351 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 4.86e-52 | 162 |
| MS.gene32563.t1 | AT1G63220 | 39.355 | 155 | 80 | 4 | 1 | 152 | 1 | 144 | 1.82e-29 | 105 |
| MS.gene32563.t1 | AT4G00467 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 4.27e-23 | 90.1 |
| MS.gene32563.t1 | AT4G00467 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 6.85e-23 | 90.1 |
| MS.gene32563.t1 | AT1G63220 | 34.839 | 155 | 73 | 5 | 1 | 152 | 1 | 130 | 3.95e-20 | 80.9 |
| MS.gene32563.t1 | AT4G34150 | 33.333 | 96 | 60 | 2 | 5 | 100 | 11 | 102 | 1.56e-13 | 66.2 |
| MS.gene32563.t1 | AT3G07940 | 34.021 | 97 | 58 | 3 | 3 | 99 | 228 | 318 | 3.81e-11 | 60.1 |
Find 36 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGTTCATGGAGGTGCTTC+TGG | 0.298453 | 5.1:+62037403 | MS.gene32563:CDS |
| AGTGATAGAGAGATGACAAT+TGG | 0.341487 | 5.1:+62037383 | None:intergenic |
| CTTCAAGAGACTGATATCTT+TGG | 0.365687 | 5.1:+62037440 | MS.gene32563:CDS |
| AGAGATGACAATTGGGTTCA+TGG | 0.369657 | 5.1:+62037391 | None:intergenic |
| AATCTATGTAAAGGATCTAT+TGG | 0.391697 | 5.1:+62039585 | MS.gene32563:CDS |
| CACAAGAGCAGTGTAGTTCA+TGG | 0.424916 | 5.1:+62037684 | MS.gene32563:CDS |
| TTGTATTGGTCACCTGATCC+AGG | 0.448750 | 5.1:-62039094 | None:intergenic |
| CAAGCTCAATCTTAAAATCA+TGG | 0.468524 | 5.1:+62039114 | MS.gene32563:CDS |
| TTCTTTGTTGATAGCTCGCA+TGG | 0.469488 | 5.1:+62037626 | MS.gene32563:intron |
| GTGATAGAGAGATGACAATT+GGG | 0.495442 | 5.1:+62037384 | None:intergenic |
| AGAGTGGAATACCCTGGATC+AGG | 0.506612 | 5.1:+62039082 | MS.gene32563:CDS |
| ATGTTCTCTTACAATACAAA+AGG | 0.507230 | 5.1:+62037655 | MS.gene32563:CDS |
| TTCACCGCAATAAGAATTGT+CGG | 0.511915 | 5.1:-62039668 | None:intergenic |
| TTGTATTGTAAGAGAACATA+CGG | 0.514214 | 5.1:-62037651 | None:intergenic |
| TATTGCGGTGAACTCGAAGT+TGG | 0.529111 | 5.1:+62039679 | MS.gene32563:CDS |
| TTGGCAGAAGGAGCAGAGAA+TGG | 0.534847 | 5.1:+62039604 | MS.gene32563:CDS |
| CGATGACATTGGCGGATGGA+GGG | 0.537095 | 5.1:+62040452 | MS.gene32563:CDS |
| GTGCTTCTGGTGAAAGCAAA+GGG | 0.538178 | 5.1:+62037416 | MS.gene32563:CDS |
| CGTGTCCAGAATCTATGTAA+AGG | 0.538764 | 5.1:+62039576 | MS.gene32563:intron |
| ACGATGACATTGGCGGATGG+AGG | 0.548198 | 5.1:+62040451 | MS.gene32563:CDS |
| ACAAATTTCTCATTCCATAC+CGG | 0.548657 | 5.1:-62039055 | None:intergenic |
| GAATATACTGACGATGACAT+TGG | 0.562720 | 5.1:+62040441 | MS.gene32563:CDS |
| GTCTTCAGAGTGGAATACCC+TGG | 0.575552 | 5.1:+62039076 | MS.gene32563:CDS |
| CAATCTTAAAATCATGGACA+AGG | 0.579708 | 5.1:+62039120 | MS.gene32563:CDS |
| TGGTATAACTTACACTCGAA+AGG | 0.597779 | 5.1:+62039699 | MS.gene32563:CDS |
| GGTGCTTCTGGTGAAAGCAA+AGG | 0.600631 | 5.1:+62037415 | MS.gene32563:CDS |
| CGAGCCGACAATTCTTATTG+CGG | 0.603237 | 5.1:+62039664 | MS.gene32563:CDS |
| GGCCTGACCAACAAAATCAT+CGG | 0.607539 | 5.1:-62039155 | None:intergenic |
| GTAAAGGATCTATTGGCAGA+AGG | 0.610328 | 5.1:+62039592 | MS.gene32563:CDS |
| TGTATTGGTCACCTGATCCA+GGG | 0.614439 | 5.1:-62039093 | None:intergenic |
| TATACTGACGATGACATTGG+CGG | 0.646166 | 5.1:+62040444 | MS.gene32563:CDS |
| TGAGAAATTTGTCTTCAGAG+TGG | 0.646316 | 5.1:+62039066 | MS.gene32563:CDS |
| CTGACGATGACATTGGCGGA+TGG | 0.661388 | 5.1:+62040448 | MS.gene32563:CDS |
| CGAACCACACTATACTTGCG+AGG | 0.665447 | 5.1:-62039643 | None:intergenic |
| TCGTCCTCGCAAGTATAGTG+TGG | 0.665568 | 5.1:+62039639 | MS.gene32563:CDS |
| GATGACAATTGGGTTCATGG+AGG | 0.736317 | 5.1:+62037394 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTGTAAAATCATAAAT+AGG | - | chr5.1:62040207-62040226 | None:intergenic | 10.0% |
| !! | TAATTGTAAAATCATAAATA+GGG | - | chr5.1:62040206-62040225 | None:intergenic | 10.0% |
| !! | AAACATTGATAAAATTAGAA+AGG | - | chr5.1:62037484-62037503 | None:intergenic | 15.0% |
| !! | AACATTGATAAAATTAGAAA+GGG | - | chr5.1:62037483-62037502 | None:intergenic | 15.0% |
| !!! | AAAATTTTATCAAATTACAG+GGG | - | chr5.1:62039872-62039891 | None:intergenic | 15.0% |
| !!! | CAAAATTTTATCAAATTACA+GGG | - | chr5.1:62039873-62039892 | None:intergenic | 15.0% |
| !!! | CATTTTTTTAATTGGTTAAT+CGG | - | chr5.1:62039242-62039261 | None:intergenic | 15.0% |
| !! | AAAATGACATATATTACAAG+GGG | + | chr5.1:62040074-62040093 | MS.gene32563:intron | 20.0% |
| !! | ATTACCCTTTATCAATTATT+AGG | - | chr5.1:62039550-62039569 | None:intergenic | 20.0% |
| !! | CAAAAAATCTTCAAATTACA+AGG | - | chr5.1:62039822-62039841 | None:intergenic | 20.0% |
| !! | GAAAATACTAAACATAAGTT+TGG | - | chr5.1:62040389-62040408 | None:intergenic | 20.0% |
| !! | GAAAATGACATATATTACAA+GGG | + | chr5.1:62040073-62040092 | MS.gene32563:intron | 20.0% |
| !! | TATGAAATAATGACAATCAA+TGG | - | chr5.1:62038113-62038132 | None:intergenic | 20.0% |
| !! | TGTAATTGACAATGAAAATT+AGG | - | chr5.1:62040334-62040353 | None:intergenic | 20.0% |
| !! | TTGAAATTAACTTAGTCAAT+AGG | + | chr5.1:62040231-62040250 | MS.gene32563:intron | 20.0% |
| !! | TTGACCTAATAATTGATAAA+GGG | + | chr5.1:62039543-62039562 | MS.gene32563:intron | 20.0% |
| !!! | AAAAGTCACATTTTTTACAA+TGG | - | chr5.1:62040163-62040182 | None:intergenic | 20.0% |
| !!! | AAATTTTATCAAATTACAGG+GGG | - | chr5.1:62039871-62039890 | None:intergenic | 20.0% |
| !!! | AACCAAACAAAAAATTTTAC+AGG | + | chr5.1:62040040-62040059 | MS.gene32563:intron | 20.0% |
| !!! | AACCAAACAATAAATTTTAC+AGG | - | chr5.1:62039794-62039813 | None:intergenic | 20.0% |
| !!! | AATTTTCATTGTCAATTACA+TGG | + | chr5.1:62040334-62040353 | MS.gene32563:intron | 20.0% |
| !!! | ACCAAACAAAAAATTTTACA+GGG | + | chr5.1:62040041-62040060 | MS.gene32563:intron | 20.0% |
| !!! | ACCAAACAATAAATTTTACA+GGG | - | chr5.1:62039793-62039812 | None:intergenic | 20.0% |
| !!! | ATTTGAAGATTTTTTGGTTT+TGG | + | chr5.1:62039826-62039845 | MS.gene32563:intron | 20.0% |
| !!! | CATAGATTAAATTTTGTAAG+TGG | + | chr5.1:62038129-62038148 | MS.gene32563:intron | 20.0% |
| !!! | CCAAAATTTTATCAAATTAC+AGG | - | chr5.1:62039874-62039893 | None:intergenic | 20.0% |
| !!! | CCTGTAATTTGATAAAATTT+TGG | + | chr5.1:62039871-62039890 | MS.gene32563:intron | 20.0% |
| !!! | CTTGTAATATATGTCATTTT+CGG | - | chr5.1:62040074-62040093 | None:intergenic | 20.0% |
| !!! | CTTGTAATTTGAAGATTTTT+TGG | + | chr5.1:62039820-62039839 | MS.gene32563:intron | 20.0% |
| !!! | TGAAACTGCATTTTTTTAAT+TGG | - | chr5.1:62039250-62039269 | None:intergenic | 20.0% |
| !!! | TTGTAGTGAAATTTTATCTA+AGG | - | chr5.1:62038976-62038995 | None:intergenic | 20.0% |
| ! | AAATCAAAAAGAAATGCAGA+AGG | - | chr5.1:62038383-62038402 | None:intergenic | 25.0% |
| ! | AAATGACATATATTACAAGG+GGG | - | chr5.1:62040094-62040075 | None:intergenic | 25.0% |
| ! | AAATTGTTTCATTCATGAAC+AGG | - | chr5.1:62038577-62038596 | None:intergenic | 25.0% |
| ! | AATCTATGTAAAGGATCTAT+TGG | + | chr5.1:62039585-62039604 | MS.gene32563:CDS | 25.0% |
| ! | ACCCTGTAAAATTTATTGTT+TGG | + | chr5.1:62039789-62039808 | MS.gene32563:intron | 25.0% |
| ! | ATCCTTCAAATTACATATTG+TGG | - | chr5.1:62038836-62038855 | None:intergenic | 25.0% |
| ! | ATGTTCTCTTACAATACAAA+AGG | + | chr5.1:62037655-62037674 | MS.gene32563:CDS | 25.0% |
| ! | CGAAAATGACATATATTACA+AGG | + | chr5.1:62040072-62040091 | MS.gene32563:intron | 25.0% |
| ! | CTATGATATGTATGCATTTA+CGG | + | chr5.1:62040269-62040288 | MS.gene32563:intron | 25.0% |
| ! | CTTGACCTAATAATTGATAA+AGG | + | chr5.1:62039542-62039561 | MS.gene32563:intron | 25.0% |
| ! | GAAATGACATATATTACAAG+GGG | - | chr5.1:62039760-62039779 | None:intergenic | 25.0% |
| ! | GGAAATGACATATATTACAA+GGG | - | chr5.1:62039761-62039780 | None:intergenic | 25.0% |
| ! | TACTAAACATAAGTTTGGTT+TGG | - | chr5.1:62040384-62040403 | None:intergenic | 25.0% |
| ! | TCTTGTAATTTGAAGATTTC+TGG | - | chr5.1:62040016-62040035 | None:intergenic | 25.0% |
| ! | TGATATTGAAAGAGTGAAAT+AGG | + | chr5.1:62038288-62038307 | MS.gene32563:intron | 25.0% |
| ! | TTATGTAGTTCATGATTCAA+CGG | + | chr5.1:62038162-62038181 | MS.gene32563:intron | 25.0% |
| ! | TTGTATTGTAAGAGAACATA+CGG | - | chr5.1:62037654-62037673 | None:intergenic | 25.0% |
| !! | AAAATTTGCTCAAATTAACG+GGG | - | chr5.1:62039934-62039953 | None:intergenic | 25.0% |
| !! | AAACAAAAAATTTTACAGGG+TGG | + | chr5.1:62040044-62040063 | MS.gene32563:intron | 25.0% |
| !! | AAACAATAAATTTTACAGGG+TGG | - | chr5.1:62039790-62039809 | None:intergenic | 25.0% |
| !! | AAATTTGCTCAAATTACACA+GGG | - | chr5.1:62039901-62039920 | None:intergenic | 25.0% |
| !! | AGTATTTTCTCTAATGTTCT+TGG | + | chr5.1:62040400-62040419 | MS.gene32563:intron | 25.0% |
| !! | ATTTGTTAGGTTTAATCTAG+GGG | + | chr5.1:62038316-62038335 | MS.gene32563:intron | 25.0% |
| !! | CAAAATTTGCTCAAATTAAC+GGG | - | chr5.1:62039935-62039954 | None:intergenic | 25.0% |
| !! | GCAAAATTTGCTCAAATTAA+CGG | - | chr5.1:62039936-62039955 | None:intergenic | 25.0% |
| !! | TTAAGGAATTGAACATTTTG+TGG | + | chr5.1:62038455-62038474 | MS.gene32563:intron | 25.0% |
| !! | TTTCAAGCTATTAGTTTCAA+GGG | - | chr5.1:62040115-62040134 | None:intergenic | 25.0% |
| !!! | AAGCAGACATTTATTTTTAC+TGG | - | chr5.1:62038882-62038901 | None:intergenic | 25.0% |
| !!! | AAGGTAAACATTTTGAAACT+AGG | + | chr5.1:62039718-62039737 | MS.gene32563:intron | 25.0% |
| !!! | AATTTGAAGATTTCTGGTTT+TGG | - | chr5.1:62040010-62040029 | None:intergenic | 25.0% |
| !!! | ACCCTGTAAAATTTTTTGTT+TGG | - | chr5.1:62040045-62040064 | None:intergenic | 25.0% |
| !!! | AGATTTGTTAGGTTTAATCT+AGG | + | chr5.1:62038314-62038333 | MS.gene32563:intron | 25.0% |
| !!! | AGGTAAACATTTTGAAACTA+GGG | + | chr5.1:62039719-62039738 | MS.gene32563:intron | 25.0% |
| !!! | ATTTTAATCAATCATGACTC+TGG | - | chr5.1:62039489-62039508 | None:intergenic | 25.0% |
| !!! | CATTTCTTTTTGATTTCTTG+TGG | + | chr5.1:62038387-62038406 | MS.gene32563:intron | 25.0% |
| !!! | GATTTGTTAGGTTTAATCTA+GGG | + | chr5.1:62038315-62038334 | MS.gene32563:intron | 25.0% |
| !!! | GTATCTTTTTTTATCAACAG+TGG | + | chr5.1:62038910-62038929 | MS.gene32563:intron | 25.0% |
| !!! | TTTTAAGATTGAGCTTGTAT+TGG | - | chr5.1:62039111-62039130 | None:intergenic | 25.0% |
| AACACTGCATCTATGAATAA+GGG | + | chr5.1:62039430-62039449 | MS.gene32563:intron | 30.0% | |
| ACAAAAAACCCTAAATGAGT+AGG | + | chr5.1:62039455-62039474 | MS.gene32563:intron | 30.0% | |
| ACAAATTTCTCATTCCATAC+CGG | - | chr5.1:62039058-62039077 | None:intergenic | 30.0% | |
| ACTATCTTGAACCAATTTAG+TGG | - | chr5.1:62038193-62038212 | None:intergenic | 30.0% | |
| ATTGTGTGTGTTTGTGTTTA+TGG | + | chr5.1:62037819-62037838 | MS.gene32563:intron | 30.0% | |
| CAAGCTCAATCTTAAAATCA+TGG | + | chr5.1:62039114-62039133 | MS.gene32563:CDS | 30.0% | |
| CAATCTTAAAATCATGGACA+AGG | + | chr5.1:62039120-62039139 | MS.gene32563:CDS | 30.0% | |
| CATGCAATGTCTTTCTAATA+TGG | + | chr5.1:62037505-62037524 | MS.gene32563:intron | 30.0% | |
| CGGAAATGACATATATTACA+AGG | - | chr5.1:62039762-62039781 | None:intergenic | 30.0% | |
| CTCCACAATATGTAATTTGA+AGG | + | chr5.1:62038831-62038850 | MS.gene32563:intron | 30.0% | |
| TAGATCCTTTACATAGATTC+TGG | - | chr5.1:62039584-62039603 | None:intergenic | 30.0% | |
| TCAAAGTTACATACATGCAA+TGG | + | chr5.1:62038855-62038874 | MS.gene32563:intron | 30.0% | |
| TGGTATCTTAAACCTTTGTT+AGG | + | chr5.1:62037839-62037858 | MS.gene32563:intron | 30.0% | |
| TGTAATGTCCTACTCATTTA+GGG | - | chr5.1:62039466-62039485 | None:intergenic | 30.0% | |
| TTAATCAATTGCCTTGTGTT+TGG | + | chr5.1:62037895-62037914 | MS.gene32563:intron | 30.0% | |
| TTGAATGTATCCACATACAT+CGG | + | chr5.1:62038747-62038766 | MS.gene32563:intron | 30.0% | |
| TTTGTTAGGTTTAATCTAGG+GGG | + | chr5.1:62038317-62038336 | MS.gene32563:intron | 30.0% | |
| ! | AAATTTGCTCAAATTAACGG+GGG | - | chr5.1:62039933-62039952 | None:intergenic | 30.0% |
| ! | AACACAAACACACACAATTT+TGG | - | chr5.1:62037817-62037836 | None:intergenic | 30.0% |
| ! | AATTTTACAGGGTGGAAAAT+CGG | - | chr5.1:62039782-62039801 | None:intergenic | 30.0% |
| ! | CTTTCAAGCTATTAGTTTCA+AGG | - | chr5.1:62040116-62040135 | None:intergenic | 30.0% |
| ! | GAAATAGGAAGAGATTTGTT+AGG | + | chr5.1:62038303-62038322 | MS.gene32563:intron | 30.0% |
| ! | GAAATTTGCTCAAATTACAC+AGG | - | chr5.1:62039902-62039921 | None:intergenic | 30.0% |
| ! | TATTTTTCGTGATCTGTGAT+TGG | + | chr5.1:62039406-62039425 | MS.gene32563:intron | 30.0% |
| ! | TTTTCTTCCGATGATTTTGT+TGG | + | chr5.1:62039148-62039167 | MS.gene32563:CDS | 30.0% |
| !! | GACATGAAATGTTCACTTTT+TGG | + | chr5.1:62037749-62037768 | MS.gene32563:intron | 30.0% |
| !!! | TGGTGTTTTATTTTTCCTCT+TGG | + | chr5.1:62037525-62037544 | MS.gene32563:intron | 30.0% |
| !!! | TTCTTTTTGATTTCTTGTGG+AGG | + | chr5.1:62038390-62038409 | MS.gene32563:intron | 30.0% |
| AAATACTCCACCATTCACTT+CGG | - | chr5.1:62038079-62038098 | None:intergenic | 35.0% | |
| AATGAAATGTCCGAAGTGAA+TGG | + | chr5.1:62038066-62038085 | MS.gene32563:intron | 35.0% | |
| ACAAATTCGACGATATGACA+GGG | - | chr5.1:62039966-62039985 | None:intergenic | 35.0% | |
| AGATCAGAAGATAAACCAAG+AGG | - | chr5.1:62037543-62037562 | None:intergenic | 35.0% | |
| AGTAAGTTAATCTTCCCTGA+CGG | + | chr5.1:62038210-62038229 | MS.gene32563:intron | 35.0% | |
| AGTTGGAAAAGGAAGAAGAA+AGG | - | chr5.1:62038810-62038829 | None:intergenic | 35.0% | |
| ATATGTATGCATTTACGGTG+GGG | + | chr5.1:62040274-62040293 | MS.gene32563:intron | 35.0% | |
| ATGTTCTTGGAATTCATCAC+AGG | + | chr5.1:62040413-62040432 | MS.gene32563:intron | 35.0% | |
| ATTACATATTGTGGAGCAGT+TGG | - | chr5.1:62038827-62038846 | None:intergenic | 35.0% | |
| ATTTATCCATGTGTGACAAC+TGG | - | chr5.1:62038531-62038550 | None:intergenic | 35.0% | |
| CAACACTGCATCTATGAATA+AGG | + | chr5.1:62039429-62039448 | MS.gene32563:intron | 35.0% | |
| CACTCTTTCAATATCACAAC+AGG | - | chr5.1:62038284-62038303 | None:intergenic | 35.0% | |
| CATTTGCATGTAAATCTGAG+AGG | - | chr5.1:62037568-62037587 | None:intergenic | 35.0% | |
| CCACACATTTCATTATGAAG+TGG | + | chr5.1:62038551-62038570 | MS.gene32563:intron | 35.0% | |
| CCACTTCATAATGAAATGTG+TGG | - | chr5.1:62038554-62038573 | None:intergenic | 35.0% | |
| CTTCAAGAGACTGATATCTT+TGG | + | chr5.1:62037440-62037459 | MS.gene32563:CDS | 35.0% | |
| CTTTACATAGATTCTGGACA+CGG | - | chr5.1:62039578-62039597 | None:intergenic | 35.0% | |
| GAATATACTGACGATGACAT+TGG | + | chr5.1:62040441-62040460 | MS.gene32563:CDS | 35.0% | |
| GATATGTATGCATTTACGGT+GGG | + | chr5.1:62040273-62040292 | MS.gene32563:intron | 35.0% | |
| GTCATATCGTCGAATTTGTA+CGG | + | chr5.1:62039967-62039986 | MS.gene32563:intron | 35.0% | |
| GTGTAATGTCCTACTCATTT+AGG | - | chr5.1:62039467-62039486 | None:intergenic | 35.0% | |
| TAATATGACACCGATGTATG+TGG | - | chr5.1:62038760-62038779 | None:intergenic | 35.0% | |
| TACAAATTCGACGATATGAC+AGG | - | chr5.1:62039967-62039986 | None:intergenic | 35.0% | |
| TGAGAAATTTGTCTTCAGAG+TGG | + | chr5.1:62039066-62039085 | MS.gene32563:CDS | 35.0% | |
| TGATATGTATGCATTTACGG+TGG | + | chr5.1:62040272-62040291 | MS.gene32563:intron | 35.0% | |
| TGGTATAACTTACACTCGAA+AGG | + | chr5.1:62039699-62039718 | MS.gene32563:CDS | 35.0% | |
| TGTACGGTCAAAAATCATGA+AGG | + | chr5.1:62039983-62040002 | MS.gene32563:intron | 35.0% | |
| TTCACATCTCCTTGAAAAAG+CGG | - | chr5.1:62038627-62038646 | None:intergenic | 35.0% | |
| TTCACCGCAATAAGAATTGT+CGG | - | chr5.1:62039671-62039690 | None:intergenic | 35.0% | |
| TTCTCTATCTCTCCTAACAA+AGG | - | chr5.1:62037854-62037873 | None:intergenic | 35.0% | |
| TTTACATAGATTCTGGACAC+GGG | - | chr5.1:62039577-62039596 | None:intergenic | 35.0% | |
| TTTATCCATGTGTGACAACT+GGG | - | chr5.1:62038530-62038549 | None:intergenic | 35.0% | |
| ! | AATTTGCTCAAATTAACGGG+GGG | - | chr5.1:62039932-62039951 | None:intergenic | 35.0% |
| ! | ATCTGAGACTATCACACAAA+AGG | + | chr5.1:62038499-62038518 | MS.gene32563:intron | 35.0% |
| ! | TCTGAGACTATCACACAAAA+GGG | + | chr5.1:62038500-62038519 | MS.gene32563:intron | 35.0% |
| ! | TGTTTTGTCAGTGCTTCATA+AGG | - | chr5.1:62038669-62038688 | None:intergenic | 35.0% |
| !!! | TTTTGATTTCTTGTGGAGGA+GGG | + | chr5.1:62038394-62038413 | MS.gene32563:intron | 35.0% |
| !!! | TTTTTGATTTCTTGTGGAGG+AGG | + | chr5.1:62038393-62038412 | MS.gene32563:intron | 35.0% |
| AAATTCGACGATATGACAGG+GGG | - | chr5.1:62039964-62039983 | None:intergenic | 40.0% | |
| ATTTGCTCAAATTAACGGGG+GGG | - | chr5.1:62039931-62039950 | None:intergenic | 40.0% | |
| CAAATTCGACGATATGACAG+GGG | - | chr5.1:62039965-62039984 | None:intergenic | 40.0% | |
| CGAAACAAAGACATCGAACA+CGG | + | chr5.1:62037922-62037941 | MS.gene32563:intron | 40.0% | |
| CGTGTATTGAATGATGCAGA+GGG | + | chr5.1:62039022-62039041 | MS.gene32563:intron | 40.0% | |
| CGTGTCCAGAATCTATGTAA+AGG | + | chr5.1:62039576-62039595 | MS.gene32563:intron | 40.0% | |
| GAAGCAACTGAAGTCTTACA+CGG | - | chr5.1:62039179-62039198 | None:intergenic | 40.0% | |
| GCTGCTATTCAACAAATAGC+TGG | - | chr5.1:62039341-62039360 | None:intergenic | 40.0% | |
| GTAAAGGATCTATTGGCAGA+AGG | + | chr5.1:62039592-62039611 | MS.gene32563:CDS | 40.0% | |
| GTAAGTTAATCTTCCCTGAC+GGG | + | chr5.1:62038211-62038230 | MS.gene32563:intron | 40.0% | |
| GTGTATTGAATGATGCAGAG+GGG | + | chr5.1:62039023-62039042 | MS.gene32563:intron | 40.0% | |
| GTGTCATATTAGTGTCTGAC+CGG | + | chr5.1:62038769-62038788 | MS.gene32563:intron | 40.0% | |
| TATACTGACGATGACATTGG+CGG | + | chr5.1:62040444-62040463 | MS.gene32563:CDS | 40.0% | |
| TATGTATGCATTTACGGTGG+GGG | + | chr5.1:62040275-62040294 | MS.gene32563:intron | 40.0% | |
| TATTGTGGAGCAGTTGGAAA+AGG | - | chr5.1:62038821-62038840 | None:intergenic | 40.0% | |
| TCGTGTATTGAATGATGCAG+AGG | + | chr5.1:62039021-62039040 | MS.gene32563:intron | 40.0% | |
| TGTAGTTCATGATTCAACGG+TGG | + | chr5.1:62038165-62038184 | MS.gene32563:intron | 40.0% | |
| TGTATTGAATGATGCAGAGG+GGG | + | chr5.1:62039024-62039043 | MS.gene32563:intron | 40.0% | |
| TGTTTCGTTGACCAAACACA+AGG | - | chr5.1:62037909-62037928 | None:intergenic | 40.0% | |
| TTATCCATGTGTGACAACTG+GGG | - | chr5.1:62038529-62038548 | None:intergenic | 40.0% | |
| ! | TTCCGATGATTTTGTTGGTC+AGG | + | chr5.1:62039153-62039172 | MS.gene32563:CDS | 40.0% |
| ! | TTTGATTTCTTGTGGAGGAG+GGG | + | chr5.1:62038395-62038414 | MS.gene32563:intron | 40.0% |
| !! | TTCTTTGTTGATAGCTCGCA+TGG | + | chr5.1:62037626-62037645 | MS.gene32563:intron | 40.0% |
| !! | TTGAAAAAGCGGACTACACA+CGG | - | chr5.1:62038616-62038635 | None:intergenic | 40.0% |
| AAGGAACACCTATGTAGCAC+CGG | - | chr5.1:62038791-62038810 | None:intergenic | 45.0% | |
| CAACGGTGGAACCACTAAAT+TGG | + | chr5.1:62038179-62038198 | MS.gene32563:intron | 45.0% | |
| CACAAGAGCAGTGTAGTTCA+TGG | + | chr5.1:62037684-62037703 | MS.gene32563:CDS | 45.0% | |
| CGAGCCGACAATTCTTATTG+CGG | + | chr5.1:62039664-62039683 | MS.gene32563:CDS | 45.0% | |
| GAAATGTCCGAAGTGAATGG+TGG | + | chr5.1:62038069-62038088 | MS.gene32563:intron | 45.0% | |
| GGCCTGACCAACAAAATCAT+CGG | - | chr5.1:62039158-62039177 | None:intergenic | 45.0% | |
| GTATTGAATGATGCAGAGGG+GGG | + | chr5.1:62039025-62039044 | MS.gene32563:intron | 45.0% | |
| GTGCTTCTGGTGAAAGCAAA+GGG | + | chr5.1:62037416-62037435 | MS.gene32563:CDS | 45.0% | |
| TATTGCGGTGAACTCGAAGT+TGG | + | chr5.1:62039679-62039698 | MS.gene32563:CDS | 45.0% | |
| TGATGAGAGTCACTCGTGTT+TGG | - | chr5.1:62038692-62038711 | None:intergenic | 45.0% | |
| TTGATTTCTTGTGGAGGAGG+GGG | + | chr5.1:62038396-62038415 | MS.gene32563:intron | 45.0% | |
| ! | TGTATTGGTCACCTGATCCA+GGG | - | chr5.1:62039096-62039115 | None:intergenic | 45.0% |
| ! | TTGTATTGGTCACCTGATCC+AGG | - | chr5.1:62039097-62039116 | None:intergenic | 45.0% |
| !! | TGAAAAAGCGGACTACACAC+GGG | - | chr5.1:62038615-62038634 | None:intergenic | 45.0% |
| !!! | GTGTGTAGTCCGCTTTTTCA+AGG | + | chr5.1:62038615-62038634 | MS.gene32563:intron | 45.0% |
| !!! | AACTATTTTTTTATTTATTA+AGG | + | chr5.1:62038438-62038457 | MS.gene32563:intron | 5.0% |
| ACTAATCCGTGTACCCGTCA+GGG | - | chr5.1:62038227-62038246 | None:intergenic | 50.0% | |
| ACTACTCGACATCGGCACAT+GGG | + | chr5.1:62038026-62038045 | MS.gene32563:intron | 50.0% | |
| AGAGTGGAATACCCTGGATC+AGG | + | chr5.1:62039082-62039101 | MS.gene32563:CDS | 50.0% | |
| CGAACCACACTATACTTGCG+AGG | - | chr5.1:62039646-62039665 | None:intergenic | 50.0% | |
| GGATGCAGTTCATCTGTGAG+TGG | + | chr5.1:62038338-62038357 | MS.gene32563:intron | 50.0% | |
| GGGGGCGAAATTTGTCATGA+AGG | - | chr5.1:62039853-62039872 | None:intergenic | 50.0% | |
| GGTGCTTCTGGTGAAAGCAA+AGG | + | chr5.1:62037415-62037434 | MS.gene32563:CDS | 50.0% | |
| GTCTTCAGAGTGGAATACCC+TGG | + | chr5.1:62039076-62039095 | MS.gene32563:CDS | 50.0% | |
| GTGCTGTCACTACTCGACAT+CGG | + | chr5.1:62038018-62038037 | MS.gene32563:intron | 50.0% | |
| GTTACCCCAGTTGTCACACA+TGG | + | chr5.1:62038522-62038541 | MS.gene32563:intron | 50.0% | |
| TACTAATCCGTGTACCCGTC+AGG | - | chr5.1:62038228-62038247 | None:intergenic | 50.0% | |
| TCGTCCTCGCAAGTATAGTG+TGG | + | chr5.1:62039639-62039658 | MS.gene32563:CDS | 50.0% | |
| TTGGCAGAAGGAGCAGAGAA+TGG | + | chr5.1:62039604-62039623 | MS.gene32563:CDS | 50.0% | |
| ! | AATCTTCCCTGACGGGTACA+CGG | + | chr5.1:62038218-62038237 | MS.gene32563:intron | 50.0% |
| CACTACTCGACATCGGCACA+TGG | + | chr5.1:62038025-62038044 | MS.gene32563:intron | 55.0% | |
| CTGACGATGACATTGGCGGA+TGG | + | chr5.1:62040448-62040467 | MS.gene32563:CDS | 55.0% | |
| ! | ACGATGACATTGGCGGATGG+AGG | + | chr5.1:62040451-62040470 | MS.gene32563:CDS | 55.0% |
| ! | CGATGACATTGGCGGATGGA+GGG | + | chr5.1:62040452-62040471 | MS.gene32563:CDS | 55.0% |
| !! | AAAAGCGGACTACACACGGG+AGG | - | chr5.1:62038612-62038631 | None:intergenic | 55.0% |
| !! | AAAGCGGACTACACACGGGA+GGG | - | chr5.1:62038611-62038630 | None:intergenic | 55.0% |
| !! | GTGTCTGACCGGTGCTACAT+AGG | + | chr5.1:62038780-62038799 | MS.gene32563:intron | 55.0% |
| !! | TGGGTTCATGGAGGTGCTTC+TGG | + | chr5.1:62037403-62037422 | MS.gene32563:CDS | 55.0% |
| ATGATGCAGAGGGGGGTAGC+AGG | + | chr5.1:62039032-62039051 | MS.gene32563:intron | 60.0% | |
| ! | TTACGGTGGGGGCGCATGTT+TGG | + | chr5.1:62040286-62040305 | MS.gene32563:intron | 60.0% |
| !! | AAGCGGACTACACACGGGAG+GGG | - | chr5.1:62038610-62038629 | None:intergenic | 60.0% |
| !! | AGCGGACTACACACGGGAGG+GGG | - | chr5.1:62038609-62038628 | None:intergenic | 65.0% |
| AGGGGGGTAGCAGGCCGGTA+TGG | + | chr5.1:62039041-62039060 | MS.gene32563:CDS | 70.0% | |
| TGCAGAGGGGGGTAGCAGGC+CGG | + | chr5.1:62039036-62039055 | MS.gene32563:intron | 70.0% | |
| ! | GCGGACTACACACGGGAGGG+GGG | - | chr5.1:62038608-62038627 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 62037395 | 62040488 | 62037395 | ID=MS.gene32563 |
| chr5.1 | mRNA | 62037395 | 62040488 | 62037395 | ID=MS.gene32563.t1;Parent=MS.gene32563 |
| chr5.1 | exon | 62037395 | 62037461 | 62037395 | ID=MS.gene32563.t1.exon1;Parent=MS.gene32563.t1 |
| chr5.1 | CDS | 62037395 | 62037461 | 62037395 | ID=cds.MS.gene32563.t1;Parent=MS.gene32563.t1 |
| chr5.1 | exon | 62037640 | 62037705 | 62037640 | ID=MS.gene32563.t1.exon2;Parent=MS.gene32563.t1 |
| chr5.1 | CDS | 62037640 | 62037705 | 62037640 | ID=cds.MS.gene32563.t1;Parent=MS.gene32563.t1 |
| chr5.1 | exon | 62039041 | 62039179 | 62039041 | ID=MS.gene32563.t1.exon3;Parent=MS.gene32563.t1 |
| chr5.1 | CDS | 62039041 | 62039179 | 62039041 | ID=cds.MS.gene32563.t1;Parent=MS.gene32563.t1 |
| chr5.1 | exon | 62039585 | 62039720 | 62039585 | ID=MS.gene32563.t1.exon4;Parent=MS.gene32563.t1 |
| chr5.1 | CDS | 62039585 | 62039720 | 62039585 | ID=cds.MS.gene32563.t1;Parent=MS.gene32563.t1 |
| chr5.1 | exon | 62040435 | 62040488 | 62040435 | ID=MS.gene32563.t1.exon5;Parent=MS.gene32563.t1 |
| chr5.1 | CDS | 62040435 | 62040488 | 62040435 | ID=cds.MS.gene32563.t1;Parent=MS.gene32563.t1 |
| Gene Sequence |
| Protein sequence |
