AlfalfaGEDB | MS.gene32631

M. sativa cultivar XinJiangDaYe / MS.gene32631

KEGG: K14515
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00646.36 PF13516.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32631.t1	XP_003603398.2	96.9	641	20	0	1	641	1	641	1.30E-238	835.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32631.t1	Q708Y0	56.8	643	256	6	1	641	1	623	2.6e-99	364.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32631.t1	G7JB21	96.9	641	20	0	1	641	1	641	9.2e-239	835.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene005189	MS.gene32631	PPI
MS.gene040998	MS.gene32631	PPI
MS.gene32631	MS.gene52620	PPI
MS.gene32631	MS.gene006075	PPI
MS.gene32631	MS.gene78077	PPI
MS.gene32631	MS.gene018833	PPI
MS.gene32631	MS.gene88847	PPI
MS.gene32631	MS.gene60765	PPI
MS.gene32631	MS.gene91547	PPI
MS.gene32631	MS.gene041002	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32631.t1	MTR_3g107280	97.036	641	19	0	1	641	1	641	0.0	1247
MS.gene32631.t1	MTR_1g012520	66.512	645	208	4	1	640	1	642	0.0	845
MS.gene32631.t1	MTR_4g114640	55.000	600	266	3	44	640	34	632	0.0	600
MS.gene32631.t1	MTR_4g114650	50.746	603	256	5	44	641	88	654	0.0	548
MS.gene32631.t1	MTR_4g114650	50.746	603	256	5	44	641	33	599	0.0	548
MS.gene32631.t1	MTR_4g114650	50.746	603	256	5	44	641	37	603	0.0	548
MS.gene32631.t1	MTR_2g021030	25.316	553	356	15	71	579	11	550	3.34e-35	141
MS.gene32631.t1	MTR_2g021030	27.384	409	232	12	226	606	127	498	1.58e-25	112
MS.gene32631.t1	MTR_2g021030	27.574	272	172	3	172	419	305	575	3.00e-23	104
MS.gene32631.t1	MTR_4g013255	27.565	497	302	17	137	605	133	599	1.16e-28	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32631.t1	AT2G25490	56.563	640	265	6	1	640	1	627	0.0	676
MS.gene32631.t1	AT5G25350	51.788	643	288	6	1	641	1	623	0.0	608
MS.gene32631.t1	AT4G15475	28.007	582	378	19	71	641	11	562	8.42e-48	177
MS.gene32631.t1	AT4G15475	26.895	409	280	8	124	526	180	575	1.87e-31	130
MS.gene32631.t1	AT4G15475	28.840	319	214	7	143	460	282	588	2.97e-29	123
MS.gene32631.t1	AT5G27920	29.083	447	275	16	173	604	158	577	1.60e-28	121
MS.gene32631.t1	AT5G27920	26.351	296	185	7	200	495	338	600	4.46e-14	75.9
MS.gene32631.t1	AT5G23340	28.881	277	189	6	304	577	85	356	4.15e-25	108
MS.gene32631.t1	AT5G23340	25.266	376	257	12	69	433	8	370	3.48e-23	102
MS.gene32631.t1	AT5G23340	29.213	178	123	3	456	632	103	278	4.64e-14	75.1

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Find 158 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAAGGCTCTTACTC+TGG	0.417528	3.1:-84936742	MS.gene32631:CDS
AAAATTGGGTGATTCCCTCG+AGG	0.689356	3.1:-84936199	MS.gene32631:CDS
AAACCGTGGTGCAAAATTGA+AGG	0.459034	3.1:-84936754	MS.gene32631:CDS
AAACCTTAATGGTTGTAAAA+AGG	0.296888	3.1:-84936406	MS.gene32631:CDS
AAAGCCTTGTCAGAAATTGT+TGG	0.508372	3.1:+84937344	None:intergenic
AAAGTACATCCAGATTGAAC+AGG	0.488581	3.1:+84936271	None:intergenic
AAATTGGGTGATTCCCTCGA+GGG	0.585090	3.1:-84936198	MS.gene32631:CDS
AAATTGTTGGCAACTTGCAT+AGG	0.545096	3.1:+84937357	None:intergenic
AACTAACGTCGCTCACAATT+GGG	0.438220	3.1:-84936977	MS.gene32631:CDS
AAGAAGACACCCGCCTCCTT+CGG	0.396120	3.1:+84937947	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTAATGGTTGTAAAAAGGT+CGG	-	chr3.1:84938333-84938352	MS.gene32631:intron	30.0%
GTATCAATTAAAAACTGTCC+TGG	-	chr3.1:84937529-84937548	MS.gene32631:CDS	30.0%
TAGATTAACATTACCCAAAC+TGG	+	chr3.1:84938235-84938254	None:intergenic	30.0%
TGCTCAAAATTCATTTGTGT+TGG	-	chr3.1:84936550-84936569	MS.gene32631:CDS	30.0%
TTAATGGTTGTAAAAAGGTC+GGG	-	chr3.1:84938334-84938353	MS.gene32631:intron	30.0%
TTGGGTAATGTTAATCTAAG+TGG	-	chr3.1:84938237-84938256	MS.gene32631:intron	30.0%
AAAATTGAAGGCTCTTACTC+TGG	-	chr3.1:84937993-84938012	MS.gene32631:intron	35.0%
AAAGTACATCCAGATTGAAC+AGG	+	chr3.1:84938467-84938486	None:intergenic	35.0%
AAATTGTTGGCAACTTGCAT+AGG	+	chr3.1:84937381-84937400	None:intergenic	35.0%
AATGAAGGTCTACATGCTAT+TGG	-	chr3.1:84937481-84937500	MS.gene32631:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	84936110	84938647	84936110	ID=MS.gene32631
chr3.1	mRNA	84936110	84938647	84936110	ID=MS.gene32631.t1;Parent=MS.gene32631
chr3.1	exon	84938623	84938647	84938623	ID=MS.gene32631.t1.exon1;Parent=MS.gene32631.t1
chr3.1	CDS	84938623	84938647	84938623	ID=cds.MS.gene32631.t1;Parent=MS.gene32631.t1
chr3.1	exon	84936110	84938010	84936110	ID=MS.gene32631.t1.exon2;Parent=MS.gene32631.t1
chr3.1	CDS	84936110	84938010	84936110	ID=cds.MS.gene32631.t1;Parent=MS.gene32631.t1

Gene Sequence

>MS.gene32631

ATGTCTAAAGTTCTCAGCTTTACCGGTAAGCTTTTGATTTGGTTCATGTTTCATCTGATTATTGGTTTTAGCTGTCGAGTTTTGATTCTGTTATTTTATAATGTTTGTTATCATAGATATGAATTTGATGTTTTGATTTTAGTTTTCTGTGTTCTATATTGATTTGTTATGATTTCTATTTTAGTTTTGGTAATTAAATCTACTTTTTTGGTGGATCTGATTAGTGATATAGACAATTTAATTTTATTTATTTTGAGATAGTATATAATTTGGCATGAAATTGTTTTAATAATTTGCTTTTAGTGACGATAAAAGATAATTTTGTTGGTAGTTGTTATATGTATTTTGTGGGAAATGAATCATGTTCACATATATGATAGATAGTTTTGTATGCATATGAGATCAATAATTTTGCTCAAAATTGATTTGATCAGTAATTTTGCTCAAAATTCATTTGTGTTGGATTTCTTTAATATGTCTAGTTATGTGTTTTGGTCAATTTAATTTTTTTGTTTGGTTGTGTTCAAATCTTTTACTCAGATTATATAATACTCATTCATGTGGTTTTACTGGTAGAGTTTTTATGTTTCTCTAATTTTATTTTTTTTATTTACCTTGTGTGTGTTTGATTTCTCAGGAGGTGATGATTTTTGTACTGGAAGGTCGATGTACCTTAACCCGAAGGAGGCGGGTGTCTTCTTGTCTCTTGGCCGTCAAGAATATGCTTACAGACCTCTTCAAAAGAGATCTCGCTTCAATGTCCCATTTGACTTCAGTGGAGAAAAATGGTTTGAGCAGAAGCTAGAGACATCTATTGAAACATTGCCTGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGAAGGACAAGATAGGAGCTTATGTGCTTCTGTATCCAAGCGCTGGCTCACGCTTCTAAGCAGTATTTCCAAGAATGAAATCTGCAGCAACGCAAGTTCTGGAAACAAGGACGGTGACAATCAAGAATTTGGTGATGTAGGCTATCTTTCTCGAAGCTTGGAGGGGAAAAAGGCAACAGATGTCAGACTAGCTGCCATTGCTGTTGGCACACAATCTCGAGGAGGATTAGGGAAGCTTTCAATTCATGGAAGCAATCCAGATCGTGCCTTGACTGATGTAGGTCTCAAGGCAGTTGCTCATGGCTGCCCTTCTCTGAAGTCTTTCACTCTTTGGGATGTTGCTACCATTAGTGACAAAGGCTTGATCGAGATTGCTAATGGTTGTCATCAGATAGAGGAGCTTGACCTATGCAAGTTGCCAACAATTTCTGACAAGGCTTTGATTGCAGTTGCAAAGCACTGTCCGAATCTGACTGAGTTATCGATAGAGTCATGTCCTAGCATCGGTAATGAAGGTCTACATGCTATTGGAAAGTTGTGTCCAAATCTAAGGTCCGTATCAATTAAAAACTGTCCTGGAGTTCGTGATCAGGGAATTGCTGGCCTATTATGTTCAGCATCCATTATTCTAAAAAAGCTGACACTTGAATCGCTAGCTGTTTCTGATTACTCACTAGCAGTTATTGGACAATATGGCTTTGTGGTTACTGATCTTGTCTTAAATTCCCTTCCAAATGTCACCGAGAAAGGATTCTGGGTGATGGGTAATGGCCATGCACTGCAGCAACTAACGTCGCTCACAATTGGGCTGTGCCCTGGAGTAACAGATATTGGGCTTGAAGCTGTAGGGAAGGGTTGTCCAAATGTGAAAAACTTTCAGCTTCGTAGGTGTGCATTTCTGTCAGACAATGGGCTGGTATCGTTCACCAAGGCTGCTCCATCAATTGTGAGCCTACAATTGGAAGAGTGCCATAGGATTACCCAATTTGGGGTTGCCGGTGTCATTTTAAACCGTGGTGCAAAATTGAAGGCTCTTACTCTGGTAAGCTGCTACGGGATCAAAGATCTGAATCTCAATTTGCCAGCAGTATCTCCATGTCAGACAATTTCGTCATTATCAATCCGTAACTGCCCTGGAGTTGGTAATTTTACTCTCAACGTCCTTGGGAAGCTCTGTCCTATGCTTCAGTGTCTTGAATTGATTGGACTTGAGGGAATAACAGACCCAGGGTTTATTTCACTGCTTCAGAGGTCTAAGGCCAGTTTGGGTAATGTTAATCTAAGTGGTTGCATCAATCTGACAGATGTAGGAGTTTTGTCCATGGTCAAGTTGCATTGTTCGACTCTTGGAGTGCTAAACCTTAATGGTTGTAAAAAGGTCGGGGATGCTTCCTTGACAGCAATTGCAGACAATTGCATTGTCTTGAGTGATCTTGATGTTTCCGAGTGTGCAATCACCGATGCAGGGATTTCTGCCCTTACTCGTGGAGTCCTGTTCAATCTGGATGTACTTTCTTTGGCAGGTTGCTCATTGGTTTCAAACAAGAGCTTGTCTGCTTTGAAAAAATTGGGTGATTCCCTCGAGGGATTAAATATAAAAAATTGCAATTCGATCAGCAGACGCACAGTTAACAAGCTTGTGGAACATCTCTGGATGTGTGACATCCTCTTCTGA

Protein sequence

>MS.gene32631.t1

MSKVLSFTGGDDFCTGRSMYLNPKEAGVFLSLGRQEYAYRPLQKRSRFNVPFDFSGEKWFEQKLETSIETLPDECLFEILRRLPEGQDRSLCASVSKRWLTLLSSISKNEICSNASSGNKDGDNQEFGDVGYLSRSLEGKKATDVRLAAIAVGTQSRGGLGKLSIHGSNPDRALTDVGLKAVAHGCPSLKSFTLWDVATISDKGLIEIANGCHQIEELDLCKLPTISDKALIAVAKHCPNLTELSIESCPSIGNEGLHAIGKLCPNLRSVSIKNCPGVRDQGIAGLLCSASIILKKLTLESLAVSDYSLAVIGQYGFVVTDLVLNSLPNVTEKGFWVMGNGHALQQLTSLTIGLCPGVTDIGLEAVGKGCPNVKNFQLRRCAFLSDNGLVSFTKAAPSIVSLQLEECHRITQFGVAGVILNRGAKLKALTLVSCYGIKDLNLNLPAVSPCQTISSLSIRNCPGVGNFTLNVLGKLCPMLQCLELIGLEGITDPGFISLLQRSKASLGNVNLSGCINLTDVGVLSMVKLHCSTLGVLNLNGCKKVGDASLTAIADNCIVLSDLDVSECAITDAGISALTRGVLFNLDVLSLAGCSLVSNKSLSALKKLGDSLEGLNIKNCNSISRRTVNKLVEHLWMCDILF