AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32631

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32631.t1 MTR_3g107280 97.036 641 19 0 1 641 1 641 0.0 1247
MS.gene32631.t1 MTR_1g012520 66.512 645 208 4 1 640 1 642 0.0 845
MS.gene32631.t1 MTR_4g114640 55.000 600 266 3 44 640 34 632 0.0 600
MS.gene32631.t1 MTR_4g114650 50.746 603 256 5 44 641 88 654 0.0 548
MS.gene32631.t1 MTR_4g114650 50.746 603 256 5 44 641 33 599 0.0 548
MS.gene32631.t1 MTR_4g114650 50.746 603 256 5 44 641 37 603 0.0 548
MS.gene32631.t1 MTR_2g021030 25.316 553 356 15 71 579 11 550 3.34e-35 141
MS.gene32631.t1 MTR_2g021030 27.384 409 232 12 226 606 127 498 1.58e-25 112
MS.gene32631.t1 MTR_2g021030 27.574 272 172 3 172 419 305 575 3.00e-23 104
MS.gene32631.t1 MTR_4g013255 27.565 497 302 17 137 605 133 599 1.16e-28 122
MS.gene32631.t1 MTR_4g013255 25.460 326 208 8 174 499 320 610 1.33e-20 96.7
MS.gene32631.t1 MTR_4g013255 26.199 271 164 6 135 404 336 571 8.80e-16 81.6
MS.gene32631.t1 MTR_1g114610 27.411 394 256 12 69 445 18 398 2.09e-27 115
MS.gene32631.t1 MTR_1g114610 23.724 333 222 5 304 634 95 397 3.02e-17 84.7
MS.gene32631.t1 MTR_1g114610 28.352 261 153 7 140 372 145 399 2.87e-15 79.0
MS.gene32631.t1 MTR_2g021030 27.488 422 261 15 71 466 11 413 8.63e-25 108
MS.gene32631.t1 MTR_2g021030 25.786 318 204 9 330 622 127 437 1.59e-20 95.5
MS.gene32631.t1 MTR_2g021030 25.738 237 146 5 174 410 231 437 3.37e-16 82.0
MS.gene32631.t1 MTR_2g021030 36.522 115 73 0 172 286 305 419 1.20e-15 80.1
MS.gene32631.t1 MTR_7g112570 25.909 440 288 13 169 595 190 604 8.06e-24 106
MS.gene32631.t1 MTR_7g112570 25.316 474 263 17 205 623 94 531 7.50e-20 94.4
MS.gene32631.t1 MTR_7g112570 26.415 371 215 13 127 466 240 583 2.10e-18 89.7
MS.gene32631.t1 MTR_7g112570 26.450 431 277 12 169 571 190 608 8.57e-24 106
MS.gene32631.t1 MTR_7g112570 25.316 474 263 17 205 623 94 531 8.30e-20 94.4
MS.gene32631.t1 MTR_7g112570 23.473 311 207 5 174 459 350 654 3.65e-16 82.8
MS.gene32631.t1 MTR_7g112570 26.303 422 276 12 169 577 190 589 1.70e-23 105
MS.gene32631.t1 MTR_7g112570 25.316 474 263 17 205 623 94 531 7.55e-20 94.4
MS.gene32631.t1 MTR_7g112570 26.415 371 215 13 127 466 240 583 1.81e-18 89.7
MS.gene32631.t1 MTR_8g028140 26.984 378 238 10 66 423 17 376 9.30e-21 95.5
MS.gene32631.t1 MTR_1g054625 30.769 247 154 9 343 585 107 340 2.66e-20 93.2
MS.gene32631.t1 MTR_1g054625 27.119 236 159 5 142 372 89 316 9.63e-14 73.6
MS.gene32631.t1 MTR_1g054625 26.016 246 163 6 172 407 90 326 1.27e-12 70.1
MS.gene32631.t1 MTR_1g054625 22.924 301 173 7 213 484 79 349 8.89e-11 64.3
MS.gene32631.t1 MTR_1g054625 30.453 243 152 9 347 585 14 243 3.50e-19 88.2
MS.gene32631.t1 MTR_1g054625 23.904 251 158 5 160 407 9 229 1.98e-14 73.9
MS.gene32631.t1 MTR_1g054625 25.668 187 131 3 330 515 51 230 2.64e-11 64.7
MS.gene32631.t1 MTR_8g028140 28.058 278 174 6 159 423 32 296 5.65e-18 85.9
MS.gene32631.t1 MTR_8g028140 24.671 304 178 8 266 549 16 288 6.29e-11 64.7
MS.gene32631.t1 MTR_3g088895 25.926 216 107 3 196 411 111 273 2.88e-16 81.3
MS.gene32631.t1 MTR_1g015450 24.494 445 226 15 174 580 327 699 3.04e-16 83.2
MS.gene32631.t1 MTR_4g019320 20.755 424 292 8 178 577 122 525 5.62e-16 81.6
MS.gene32631.t1 MTR_4g009030 23.404 564 336 20 68 571 3 530 5.88e-16 81.6
MS.gene32631.t1 MTR_1g029500 23.404 282 147 4 196 461 98 326 9.20e-16 79.7
MS.gene32631.t1 MTR_1g029500 31.507 146 73 3 141 262 127 269 9.55e-12 67.4
MS.gene32631.t1 MTR_1g015480 23.557 433 221 13 186 580 157 517 1.79e-14 77.4
MS.gene32631.t1 MTR_1g015480 23.256 473 274 16 173 577 164 615 1.40e-11 68.2
MS.gene32631.t1 MTR_4g130620 30.726 179 108 5 227 403 102 266 1.51e-13 72.4
MS.gene32631.t1 MTR_5g095830 22.440 459 268 13 178 593 149 562 6.06e-13 72.4
MS.gene32631.t1 MTR_4g133640 21.769 441 289 11 178 576 135 561 2.29e-12 70.5
MS.gene32631.t1 MTR_4g133640 23.892 406 239 15 160 517 172 555 5.15e-11 66.2
MS.gene32631.t1 MTR_1g018790 23.978 367 199 12 225 580 137 434 1.11e-11 68.2
MS.gene32631.t1 MTR_3g006050 24.866 374 212 13 200 514 192 555 6.84e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32631.t1 AT2G25490 56.563 640 265 6 1 640 1 627 0.0 676
MS.gene32631.t1 AT5G25350 51.788 643 288 6 1 641 1 623 0.0 608
MS.gene32631.t1 AT4G15475 28.007 582 378 19 71 641 11 562 8.42e-48 177
MS.gene32631.t1 AT4G15475 26.895 409 280 8 124 526 180 575 1.87e-31 130
MS.gene32631.t1 AT4G15475 28.840 319 214 7 143 460 282 588 2.97e-29 123
MS.gene32631.t1 AT5G27920 29.083 447 275 16 173 604 158 577 1.60e-28 121
MS.gene32631.t1 AT5G27920 26.351 296 185 7 200 495 338 600 4.46e-14 75.9
MS.gene32631.t1 AT5G23340 28.881 277 189 6 304 577 85 356 4.15e-25 108
MS.gene32631.t1 AT5G23340 25.266 376 257 12 69 433 8 370 3.48e-23 102
MS.gene32631.t1 AT5G23340 29.213 178 123 3 456 632 103 278 4.64e-14 75.1
MS.gene32631.t1 AT5G01720 23.232 396 249 6 176 548 241 604 1.73e-23 105
MS.gene32631.t1 AT5G01720 26.096 479 310 15 174 623 85 548 3.37e-19 92.4
MS.gene32631.t1 AT5G01720 22.593 270 175 6 173 415 315 577 6.86e-14 75.5
MS.gene32631.t1 AT1G21410 24.537 216 110 2 196 411 100 262 8.50e-16 80.1
MS.gene32631.t1 AT1G21410 24.537 216 110 2 196 411 100 262 8.50e-16 80.1
MS.gene32631.t1 AT1G77000 25.000 216 109 2 196 411 100 262 8.74e-16 79.7
MS.gene32631.t1 AT1G77000 25.000 216 109 2 196 411 100 262 8.74e-16 79.7
MS.gene32631.t1 AT1G55590 23.767 223 165 3 172 392 296 515 2.11e-14 77.0
MS.gene32631.t1 AT3G58530 26.866 268 159 7 343 607 109 342 3.58e-14 74.7
MS.gene32631.t1 AT3G58530 23.140 242 148 4 152 393 102 305 2.93e-12 68.9
MS.gene32631.t1 AT4G33210 24.200 500 279 18 160 616 351 793 5.25e-14 76.3
MS.gene32631.t1 AT3G07550 25.450 389 241 10 61 423 8 373 1.33e-13 73.6
MS.gene32631.t1 AT3G07550 25.450 389 241 10 61 423 8 373 1.33e-13 73.6
MS.gene32631.t1 AT1G47056 28.028 289 148 9 345 580 130 411 3.42e-13 72.8
MS.gene32631.t1 AT1G47056 33.523 176 100 8 117 286 244 408 1.79e-12 70.5
MS.gene32631.t1 AT1G47056 23.427 461 291 17 43 490 15 426 4.09e-12 69.3
MS.gene32631.t1 AT4G07400 38.211 123 73 3 160 282 344 463 9.37e-12 68.6
MS.gene32631.t1 AT1G80630 23.000 400 239 12 198 567 148 508 3.01e-11 67.0
MS.gene32631.t1 AT3G07550 24.936 389 216 11 61 423 8 346 3.10e-11 65.9
MS.gene32631.t1 AT2G06040 24.812 266 194 4 335 598 473 734 9.74e-11 65.5

Find 158 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGAAGTCTTTCACTCTT+TGG 0.100387 3.1:-84937451 MS.gene32631:CDS
GATTACTCACTAGCAGTTAT+TGG 0.193905 3.1:-84937098 MS.gene32631:CDS
TGCCATAGGATTACCCAATT+TGG 0.212481 3.1:-84936795 MS.gene32631:CDS
TGACACCGGCAACCCCAAAT+TGG 0.224942 3.1:+84936781 None:intergenic
TCTGAAGTCTTTCACTCTTT+GGG 0.233451 3.1:-84937450 MS.gene32631:CDS
CAATCTGGATGTACTTTCTT+TGG 0.236470 3.1:-84936265 MS.gene32631:CDS
CTTGGAGTGCTAAACCTTAA+TGG 0.242738 3.1:-84936417 MS.gene32631:CDS
TCGAAGCTTGGAGGGGAAAA+AGG 0.250888 3.1:-84937612 MS.gene32631:CDS
GTTGCTGCAGATTTCATTCT+TGG 0.268042 3.1:+84937694 None:intergenic
GCCATAGGATTACCCAATTT+GGG 0.271797 3.1:-84936794 MS.gene32631:CDS
GTCCTTCAGGCAACCTTCTA+AGG 0.271825 3.1:+84937777 None:intergenic
TGCCCTGGAGTAACAGATAT+TGG 0.295544 3.1:-84936951 MS.gene32631:CDS
ACACAATCTCGAGGAGGATT+AGG 0.296188 3.1:-84937554 MS.gene32631:CDS
AAACCTTAATGGTTGTAAAA+AGG 0.296888 3.1:-84936406 MS.gene32631:CDS
ATCTGCAGCAACGCAAGTTC+TGG 0.313753 3.1:-84937683 MS.gene32631:CDS
GACGGTGACAATCAAGAATT+TGG 0.313887 3.1:-84937653 MS.gene32631:CDS
ATTGATACGGACCTTAGATT+TGG 0.325991 3.1:+84937221 None:intergenic
TTCACTGCTTCAGAGGTCTA+AGG 0.330025 3.1:-84936526 MS.gene32631:CDS
CAACTAACGTCGCTCACAAT+TGG 0.335014 3.1:-84936978 MS.gene32631:CDS
TAATGGATGCTGAACATAAT+AGG 0.341815 3.1:+84937159 None:intergenic
AATTGTAGGCTCACAATTGA+TGG 0.346716 3.1:+84936825 None:intergenic
CTTCAGTGTCTTGAATTGAT+TGG 0.348304 3.1:-84936579 MS.gene32631:CDS
TCAGAGGTCTAAGGCCAGTT+TGG 0.348388 3.1:-84936517 MS.gene32631:CDS
TTCTTTGGCAGGTTGCTCAT+TGG 0.352209 3.1:-84936250 MS.gene32631:CDS
ATTACCCAATTTGGGGTTGC+CGG 0.354313 3.1:-84936786 MS.gene32631:CDS
ATGTCACCGAGAAAGGATTC+TGG 0.362806 3.1:-84937028 MS.gene32631:CDS
TAGATTAACATTACCCAAAC+TGG 0.367200 3.1:+84936503 None:intergenic
TTAGGGAAGCTTTCAATTCA+TGG 0.367968 3.1:-84937536 MS.gene32631:CDS
AAGCTCCTATCTTGTCCTTC+AGG 0.374082 3.1:+84937764 None:intergenic
AATCCTTTCTCGGTGACATT+TGG 0.374117 3.1:+84937032 None:intergenic
CTAGCAGTTATTGGACAATA+TGG 0.374694 3.1:-84937089 MS.gene32631:CDS
GCGGGTGTCTTCTTGTCTCT+TGG 0.378188 3.1:-84937938 MS.gene32631:CDS
GAAAGTTGTGTCCAAATCTA+AGG 0.379486 3.1:-84937232 MS.gene32631:CDS
CACCCGCCTCCTTCGGGTTA+AGG 0.382781 3.1:+84937954 None:intergenic
CTCACAATTGGGCTGTGCCC+TGG 0.383441 3.1:-84936966 MS.gene32631:CDS
AAGTTGCATTGTTCGACTCT+TGG 0.384757 3.1:-84936435 MS.gene32631:CDS
TCTAAAGTTCTCAGCTTTAC+CGG 0.389616 3.1:-84938622 MS.gene32631:intron
CAGAGGTCTAAGGCCAGTTT+GGG 0.390240 3.1:-84936516 MS.gene32631:CDS
AATGAAGGTCTACATGCTAT+TGG 0.392573 3.1:-84937254 MS.gene32631:CDS
CTTCCAAATGTCACCGAGAA+AGG 0.393704 3.1:-84937035 MS.gene32631:CDS
GCCCTGGAGTAACAGATATT+GGG 0.394824 3.1:-84936950 MS.gene32631:CDS
AGAAGACACCCGCCTCCTTC+GGG 0.396078 3.1:+84937948 None:intergenic
AAGAAGACACCCGCCTCCTT+CGG 0.396120 3.1:+84937947 None:intergenic
GCCTCTTTGAGATCCTTAGA+AGG 0.399791 3.1:-84937790 MS.gene32631:CDS
CTGTCCTGGAGTTCGTGATC+AGG 0.403623 3.1:-84937192 MS.gene32631:CDS
CACAATCTCGAGGAGGATTA+GGG 0.405866 3.1:-84937553 MS.gene32631:CDS
CTGGATGTACTTTCTTTGGC+AGG 0.406723 3.1:-84936261 MS.gene32631:CDS
CTTGAATTGATTGGACTTGA+GGG 0.412726 3.1:-84936570 MS.gene32631:CDS
ATCAATTGTGAGCCTACAAT+TGG 0.415296 3.1:-84936823 MS.gene32631:CDS
TACCAACTCCAGGGCAGTTA+CGG 0.416240 3.1:+84936640 None:intergenic
AAAATTGAAGGCTCTTACTC+TGG 0.417528 3.1:-84936742 MS.gene32631:CDS
TATGGCACTCTTCCAATTGT+AGG 0.418212 3.1:+84936811 None:intergenic
CACAATTGATGGAGCAGCCT+TGG 0.432002 3.1:+84936836 None:intergenic
AACTAACGTCGCTCACAATT+GGG 0.438220 3.1:-84936977 MS.gene32631:CDS
CTTACTCTGGTAAGCTGCTA+CGG 0.439956 3.1:-84936729 MS.gene32631:CDS
ACAAGCTTGTGGAACATCTC+TGG 0.440119 3.1:-84936131 MS.gene32631:CDS
GTTCGTGATCAGGGAATTGC+TGG 0.441466 3.1:-84937182 MS.gene32631:CDS
CATCACCCAGAATCCTTTCT+CGG 0.442853 3.1:+84937022 None:intergenic
GGCTTGATCGAGATTGCTAA+TGG 0.449362 3.1:-84937404 MS.gene32631:CDS
TGCATCGGTGATTGCACACT+CGG 0.454668 3.1:+84936320 None:intergenic
AATCAAGAATTTGGTGATGT+AGG 0.455498 3.1:-84937644 MS.gene32631:CDS
ATCGATAACTCAGTCAGATT+CGG 0.457316 3.1:+84937299 None:intergenic
ACATCAGTCAAGGCACGATC+TGG 0.458394 3.1:+84937506 None:intergenic
AAACCGTGGTGCAAAATTGA+AGG 0.459034 3.1:-84936754 MS.gene32631:CDS
TGAACAGGACTCCACGAGTA+AGG 0.461905 3.1:+84936286 None:intergenic
GAGTGTGCAATCACCGATGC+AGG 0.462800 3.1:-84936318 MS.gene32631:CDS
GACACCGGCAACCCCAAATT+GGG 0.463002 3.1:+84936782 None:intergenic
ATCTCAAAGAGGCATTCATC+AGG 0.464081 3.1:+84937800 None:intergenic
GATCAAGCCTTTGTCACTAA+TGG 0.465229 3.1:+84937418 None:intergenic
TCGTGGAGTCCTGTTCAATC+TGG 0.467985 3.1:-84936280 MS.gene32631:CDS
TATTGGACAATATGGCTTTG+TGG 0.469637 3.1:-84937081 MS.gene32631:CDS
GGTTGCCTGAAGGACAAGAT+AGG 0.472680 3.1:-84937769 MS.gene32631:CDS
AGCCCAATATCTGTTACTCC+AGG 0.474848 3.1:+84936948 None:intergenic
GGATTCTGGGTGATGGGTAA+TGG 0.476172 3.1:-84937014 MS.gene32631:CDS
AATGTCCCATTTGACTTCAG+TGG 0.477222 3.1:-84937869 MS.gene32631:CDS
TTTCTCCACTGAAGTCAAAT+GGG 0.478494 3.1:+84937864 None:intergenic
TAGAAGCGTGAGCCAGCGCT+TGG 0.480253 3.1:+84937727 None:intergenic
TTATCAATCCGTAACTGCCC+TGG 0.487556 3.1:-84936648 MS.gene32631:CDS
TTGGGTAATGTTAATCTAAG+TGG 0.488310 3.1:-84936498 MS.gene32631:CDS
AAAGTACATCCAGATTGAAC+AGG 0.488581 3.1:+84936271 None:intergenic
CTATCTTTCTCGAAGCTTGG+AGG 0.490244 3.1:-84937621 MS.gene32631:CDS
AGGCTATCTTTCTCGAAGCT+TGG 0.490305 3.1:-84937624 MS.gene32631:CDS
GTCTGTAAGCATATTCTTGA+CGG 0.492252 3.1:+84937915 None:intergenic
GGTCTCAAGGCAGTTGCTCA+TGG 0.502544 3.1:-84937482 MS.gene32631:CDS
CCCCAAATTGGGTAATCCTA+TGG 0.504344 3.1:+84936793 None:intergenic
TGTCACCGAGAAAGGATTCT+GGG 0.505645 3.1:-84937027 MS.gene32631:CDS
ACGTTAGTTGCTGCAGTGCA+TGG 0.507163 3.1:+84936991 None:intergenic
AAAGCCTTGTCAGAAATTGT+TGG 0.508372 3.1:+84937344 None:intergenic
ATCCGTAACTGCCCTGGAGT+TGG 0.514000 3.1:-84936642 MS.gene32631:CDS
CGAGAAAGGATTCTGGGTGA+TGG 0.515420 3.1:-84937021 MS.gene32631:CDS
TACCTTAACCCGAAGGAGGC+GGG 0.516641 3.1:-84937956 MS.gene32631:CDS
GTGCTTCTGTATCCAAGCGC+TGG 0.517996 3.1:-84937739 MS.gene32631:CDS
CTTTCTCGGTGACATTTGGA+AGG 0.518084 3.1:+84937036 None:intergenic
AGAGTAAAATTACCAACTCC+AGG 0.518751 3.1:+84936630 None:intergenic
GGGATTTCTGCCCTTACTCG+TGG 0.522818 3.1:-84936297 MS.gene32631:CDS
GATATTGGGCTTGAAGCTGT+AGG 0.528983 3.1:-84936936 MS.gene32631:CDS
GGTTTATTTCACTGCTTCAG+AGG 0.535734 3.1:-84936533 MS.gene32631:CDS
TGAAGCAGTGAAATAAACCC+TGG 0.539869 3.1:+84936537 None:intergenic
AGACTAGCTGCCATTGCTGT+TGG 0.540189 3.1:-84937578 MS.gene32631:CDS
TGTCCTAGCATCGGTAATGA+AGG 0.540249 3.1:-84937269 MS.gene32631:CDS
TATCTTTCTCGAAGCTTGGA+GGG 0.544169 3.1:-84937620 MS.gene32631:CDS
AAATTGTTGGCAACTTGCAT+AGG 0.545096 3.1:+84937357 None:intergenic
GTCTGACATGGAGATACTGC+TGG 0.549571 3.1:+84936681 None:intergenic
GGGCTTGAAGCTGTAGGGAA+GGG 0.551029 3.1:-84936930 MS.gene32631:CDS
CAACGCAAGTTCTGGAAACA+AGG 0.552191 3.1:-84937675 MS.gene32631:CDS
TCTTGAATTGATTGGACTTG+AGG 0.552643 3.1:-84936571 MS.gene32631:CDS
TTACTCTGGTAAGCTGCTAC+GGG 0.552800 3.1:-84936728 MS.gene32631:CDS
TGTCCTGGAGTTCGTGATCA+GGG 0.555690 3.1:-84937191 MS.gene32631:CDS
ATCTTTCTCGAAGCTTGGAG+GGG 0.555765 3.1:-84937619 MS.gene32631:CDS
ATATTGGGCTTGAAGCTGTA+GGG 0.555936 3.1:-84936935 MS.gene32631:CDS
GTACCTTAACCCGAAGGAGG+CGG 0.556569 3.1:-84937957 MS.gene32631:CDS
GTGCATTTCTGTCAGACAAT+GGG 0.557102 3.1:-84936872 MS.gene32631:CDS
TAATGGTTGTCATCAGATAG+AGG 0.558248 3.1:-84937387 MS.gene32631:CDS
CTTGACTGATGTAGGTCTCA+AGG 0.565875 3.1:-84937495 MS.gene32631:CDS
AATTCAAGACACTGAAGCAT+AGG 0.567525 3.1:+84936585 None:intergenic
GAGTGAAAGACTTCAGAGAA+GGG 0.568710 3.1:+84937456 None:intergenic
GAGAAAGGATTCTGGGTGAT+GGG 0.569849 3.1:-84937020 MS.gene32631:CDS
TGGGCTTGAAGCTGTAGGGA+AGG 0.570259 3.1:-84936931 MS.gene32631:CDS
TGCATCAATCTGACAGATGT+AGG 0.573775 3.1:-84936474 MS.gene32631:CDS
ATTCCCTGATCACGAACTCC+AGG 0.574036 3.1:+84937188 None:intergenic
AGAGTGAAAGACTTCAGAGA+AGG 0.580309 3.1:+84937455 None:intergenic
TGTGCATTTCTGTCAGACAA+TGG 0.584416 3.1:-84936873 MS.gene32631:CDS
AAATTGGGTGATTCCCTCGA+GGG 0.585090 3.1:-84936198 MS.gene32631:CDS
ATTGTCTGCAATTGCTGTCA+AGG 0.587916 3.1:+84936371 None:intergenic
AGATTGTGTGCCAACAGCAA+TGG 0.591886 3.1:+84937568 None:intergenic
GAACAGGACTCCACGAGTAA+GGG 0.593363 3.1:+84936287 None:intergenic
TTTCTCGGTGACATTTGGAA+GGG 0.597962 3.1:+84937037 None:intergenic
GTTGCTACCATTAGTGACAA+AGG 0.599127 3.1:-84937425 MS.gene32631:CDS
CAAGGCTACCTGCTCAGAAG+AGG 0.600220 3.1:+84936097 None:intergenic
GATCGTGCCTTGACTGATGT+AGG 0.605270 3.1:-84937503 MS.gene32631:CDS
CCATAGGATTACCCAATTTG+GGG 0.605745 3.1:-84936793 MS.gene32631:CDS
GTTGCCAACAATTTCTGACA+AGG 0.608947 3.1:-84937348 MS.gene32631:CDS
AAGGGCAGAAATCCCTGCAT+CGG 0.611779 3.1:+84936305 None:intergenic
ATTTCTGTCAGACAATGGGC+TGG 0.612009 3.1:-84936868 MS.gene32631:CDS
TACAATTGGAAGAGTGCCAT+AGG 0.616497 3.1:-84936809 MS.gene32631:CDS
CTTGAGGGAATAACAGACCC+AGG 0.616547 3.1:-84936555 MS.gene32631:CDS
ATCCTTAGAAGGTTGCCTGA+AGG 0.616856 3.1:-84937779 MS.gene32631:CDS
ACGCACAGTTAACAAGCTTG+TGG 0.617009 3.1:-84936142 MS.gene32631:CDS
ATAGAGTCATGTCCTAGCAT+CGG 0.621372 3.1:-84937278 MS.gene32631:CDS
CGAACAATGCAACTTGACCA+TGG 0.623330 3.1:+84936443 None:intergenic
GAAGCAGTGAAATAAACCCT+GGG 0.624828 3.1:+84936538 None:intergenic
ACCACGGTTTAAAATGACAC+CGG 0.630252 3.1:+84936767 None:intergenic
ACCTTCTAAGGATCTCAAAG+AGG 0.631936 3.1:+84937789 None:intergenic
AGTGTGCAATCACCGATGCA+GGG 0.633058 3.1:-84936317 MS.gene32631:CDS
GCCCAATATCTGTTACTCCA+GGG 0.638985 3.1:+84936949 None:intergenic
AATGACGAAATTGTCTGACA+TGG 0.645410 3.1:+84936669 None:intergenic
GTCGATGTACCTTAACCCGA+AGG 0.647280 3.1:-84937963 MS.gene32631:CDS
CTTGAGACCTACATCAGTCA+AGG 0.649066 3.1:+84937496 None:intergenic
AGACCTTCATTACCGATGCT+AGG 0.654284 3.1:+84937266 None:intergenic
GAGTAAAATTACCAACTCCA+GGG 0.662405 3.1:+84936631 None:intergenic
GCAAGTTCTGGAAACAAGGA+CGG 0.662723 3.1:-84937671 MS.gene32631:CDS
GCATAGGACAGAGCTTCCCA+AGG 0.666207 3.1:+84936601 None:intergenic
TTGAGGGAATAACAGACCCA+GGG 0.669478 3.1:-84936554 MS.gene32631:CDS
GATGTACCTTAACCCGAAGG+AGG 0.670839 3.1:-84937960 MS.gene32631:CDS
GCTGTTGGCACACAATCTCG+AGG 0.687326 3.1:-84937563 MS.gene32631:CDS
AAAATTGGGTGATTCCCTCG+AGG 0.689356 3.1:-84936199 MS.gene32631:CDS
GTTGGCACACAATCTCGAGG+AGG 0.726557 3.1:-84937560 MS.gene32631:CDS
TGGGCTGGTATCGTTCACCA+AGG 0.727978 3.1:-84936853 MS.gene32631:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTCAATTTAATTTTTTTGTT+TGG - chr3.1:84936604-84936623 MS.gene32631:CDS 15.0%
!!! TATGATTTCTATTTTAGTTT+TGG - chr3.1:84936277-84936296 MS.gene32631:CDS 15.0%
!!! TTTTGAGATAGTATATAATT+TGG - chr3.1:84936360-84936379 MS.gene32631:CDS 15.0%
!! TTATATAATACTCATTCATG+TGG - chr3.1:84936651-84936670 MS.gene32631:CDS 20.0%
!!! AATTAAATCTACTTTTTTGG+TGG - chr3.1:84936301-84936320 MS.gene32631:CDS 20.0%
!!! ACGATAAAAGATAATTTTGT+TGG - chr3.1:84936415-84936434 MS.gene32631:CDS 20.0%
!!! AGTTGTTATATGTATTTTGT+GGG - chr3.1:84936439-84936458 MS.gene32631:CDS 20.0%
!!! GGTAATTAAATCTACTTTTT+TGG - chr3.1:84936298-84936317 MS.gene32631:CDS 20.0%
!!! TAGTTGTTATATGTATTTTG+TGG - chr3.1:84936438-84936457 MS.gene32631:CDS 20.0%
! AAACCTTAATGGTTGTAAAA+AGG - chr3.1:84938329-84938348 MS.gene32631:intron 25.0%
! TTCATGTTTCATCTGATTAT+TGG - chr3.1:84936152-84936171 MS.gene32631:CDS 25.0%
!! ATATGTCTAGTTATGTGTTT+TGG - chr3.1:84936582-84936601 MS.gene32631:CDS 25.0%
!! TTTTATATTTAATCCCTCGA+GGG + chr3.1:84938553-84938572 None:intergenic 25.0%
!! TTTTTATATTTAATCCCTCG+AGG + chr3.1:84938554-84938573 None:intergenic 25.0%
!!! AGGACAGTTTTTAATTGATA+CGG + chr3.1:84937530-84937549 None:intergenic 25.0%
!!! TGTCAGCTTTTTTAGAATAA+TGG + chr3.1:84937596-84937615 None:intergenic 25.0%
!!! TTGTCTGCTTTGAAAAAATT+GGG - chr3.1:84938522-84938541 MS.gene32631:intron 25.0%
CTTAATGGTTGTAAAAAGGT+CGG - chr3.1:84938333-84938352 MS.gene32631:intron 30.0%
GTATCAATTAAAAACTGTCC+TGG - chr3.1:84937529-84937548 MS.gene32631:CDS 30.0%
TAGATTAACATTACCCAAAC+TGG + chr3.1:84938235-84938254 None:intergenic 30.0%
TGCTCAAAATTCATTTGTGT+TGG - chr3.1:84936550-84936569 MS.gene32631:CDS 30.0%
TTAATGGTTGTAAAAAGGTC+GGG - chr3.1:84938334-84938353 MS.gene32631:intron 30.0%
TTGGGTAATGTTAATCTAAG+TGG - chr3.1:84938237-84938256 MS.gene32631:intron 30.0%
! AGCTGAAAGTTTTTCACATT+TGG + chr3.1:84937835-84937854 None:intergenic 30.0%
! TAATGGATGCTGAACATAAT+AGG + chr3.1:84937579-84937598 None:intergenic 30.0%
!! AATCAAGAATTTGGTGATGT+AGG - chr3.1:84937091-84937110 MS.gene32631:CDS 30.0%
!! CTTGTCTGCTTTGAAAAAAT+TGG - chr3.1:84938521-84938540 MS.gene32631:intron 30.0%
AAAATTGAAGGCTCTTACTC+TGG - chr3.1:84937993-84938012 MS.gene32631:intron 35.0%
AAAGTACATCCAGATTGAAC+AGG + chr3.1:84938467-84938486 None:intergenic 35.0%
AAATTGTTGGCAACTTGCAT+AGG + chr3.1:84937381-84937400 None:intergenic 35.0%
AATGAAGGTCTACATGCTAT+TGG - chr3.1:84937481-84937500 MS.gene32631:CDS 35.0%
AATGACGAAATTGTCTGACA+TGG + chr3.1:84938069-84938088 None:intergenic 35.0%
AATTCAAGACACTGAAGCAT+AGG + chr3.1:84938153-84938172 None:intergenic 35.0%
AATTGTAGGCTCACAATTGA+TGG + chr3.1:84937913-84937932 None:intergenic 35.0%
AGAGTAAAATTACCAACTCC+AGG + chr3.1:84938108-84938127 None:intergenic 35.0%
ATCAATTGTGAGCCTACAAT+TGG - chr3.1:84937912-84937931 MS.gene32631:CDS 35.0%
ATCGATAACTCAGTCAGATT+CGG + chr3.1:84937439-84937458 None:intergenic 35.0%
ATTGATACGGACCTTAGATT+TGG + chr3.1:84937517-84937536 None:intergenic 35.0%
CAATCTGGATGTACTTTCTT+TGG - chr3.1:84938470-84938489 MS.gene32631:intron 35.0%
CTAGCAGTTATTGGACAATA+TGG - chr3.1:84937646-84937665 MS.gene32631:CDS 35.0%
CTTCAGTGTCTTGAATTGAT+TGG - chr3.1:84938156-84938175 MS.gene32631:intron 35.0%
CTTGAATTGATTGGACTTGA+GGG - chr3.1:84938165-84938184 MS.gene32631:intron 35.0%
GAAAGTTGTGTCCAAATCTA+AGG - chr3.1:84937503-84937522 MS.gene32631:CDS 35.0%
GAACCAAATCAAAAGCTTAC+CGG + chr3.1:84936135-84936154 None:intergenic 35.0%
GAGTAAAATTACCAACTCCA+GGG + chr3.1:84938107-84938126 None:intergenic 35.0%
GATTACTCACTAGCAGTTAT+TGG - chr3.1:84937637-84937656 MS.gene32631:CDS 35.0%
GTCTGTAAGCATATTCTTGA+CGG + chr3.1:84936823-84936842 None:intergenic 35.0%
TAATGGTTGTAAAAAGGTCG+GGG - chr3.1:84938335-84938354 MS.gene32631:intron 35.0%
TAATGGTTGTCATCAGATAG+AGG - chr3.1:84937348-84937367 MS.gene32631:CDS 35.0%
TCTTGAATTGATTGGACTTG+AGG - chr3.1:84938164-84938183 MS.gene32631:intron 35.0%
TGAAAAACTTTCAGCTTCGT+AGG - chr3.1:84937839-84937858 MS.gene32631:CDS 35.0%
TGAGAAATCAAACACACACA+AGG + chr3.1:84936726-84936745 None:intergenic 35.0%
TTAGGGAAGCTTTCAATTCA+TGG - chr3.1:84937199-84937218 MS.gene32631:CDS 35.0%
TTGACTTCAGTGGAGAAAAA+TGG - chr3.1:84936876-84936895 MS.gene32631:CDS 35.0%
TTTCTCCACTGAAGTCAAAT+GGG + chr3.1:84936874-84936893 None:intergenic 35.0%
! AAAGCCTTGTCAGAAATTGT+TGG + chr3.1:84937394-84937413 None:intergenic 35.0%
! AATTTTACTCTCAACGTCCT+TGG - chr3.1:84938117-84938136 MS.gene32631:intron 35.0%
! ATTTTACTCTCAACGTCCTT+GGG - chr3.1:84938118-84938137 MS.gene32631:intron 35.0%
! CGACCTTTTTACAACCATTA+AGG + chr3.1:84938335-84938354 None:intergenic 35.0%
! GTGATGATTTTTGTACTGGA+AGG - chr3.1:84936750-84936769 MS.gene32631:CDS 35.0%
! TATTGGACAATATGGCTTTG+TGG - chr3.1:84937654-84937673 MS.gene32631:CDS 35.0%
! TCTAAAGTTCTCAGCTTTAC+CGG - chr3.1:84936113-84936132 MS.gene32631:CDS 35.0%
! TCTGAAGTCTTTCACTCTTT+GGG - chr3.1:84937285-84937304 MS.gene32631:CDS 35.0%
! TTGTGTGTGTTTGATTTCTC+AGG - chr3.1:84936725-84936744 MS.gene32631:CDS 35.0%
! TTTTCTCCACTGAAGTCAAA+TGG + chr3.1:84936875-84936894 None:intergenic 35.0%
!! ACTCATTCATGTGGTTTTAC+TGG - chr3.1:84936660-84936679 MS.gene32631:CDS 35.0%
!! TTACCGGTAAGCTTTTGATT+TGG - chr3.1:84936129-84936148 MS.gene32631:CDS 35.0%
AAACCGTGGTGCAAAATTGA+AGG - chr3.1:84937981-84938000 MS.gene32631:CDS 40.0%
AACTAACGTCGCTCACAATT+GGG - chr3.1:84937758-84937777 MS.gene32631:CDS 40.0%
AAGTTGCATTGTTCGACTCT+TGG - chr3.1:84938300-84938319 MS.gene32631:intron 40.0%
AATCCTTTCTCGGTGACATT+TGG + chr3.1:84937706-84937725 None:intergenic 40.0%
AGAGTGAAAGACTTCAGAGA+AGG + chr3.1:84937283-84937302 None:intergenic 40.0%
ATAGAGTCATGTCCTAGCAT+CGG - chr3.1:84937457-84937476 MS.gene32631:CDS 40.0%
ATATTGGGCTTGAAGCTGTA+GGG - chr3.1:84937800-84937819 MS.gene32631:CDS 40.0%
ATTGTCTGCAATTGCTGTCA+AGG + chr3.1:84938367-84938386 None:intergenic 40.0%
CCATAGGATTACCCAATTTG+GGG - chr3.1:84937942-84937961 MS.gene32631:CDS 40.0%
GAAGCAGTGAAATAAACCCT+GGG + chr3.1:84938200-84938219 None:intergenic 40.0%
GACGGTGACAATCAAGAATT+TGG - chr3.1:84937082-84937101 MS.gene32631:CDS 40.0%
GAGTGAAAGACTTCAGAGAA+GGG + chr3.1:84937282-84937301 None:intergenic 40.0%
GATCAAGCCTTTGTCACTAA+TGG + chr3.1:84937320-84937339 None:intergenic 40.0%
GCCATAGGATTACCCAATTT+GGG - chr3.1:84937941-84937960 MS.gene32631:CDS 40.0%
GGTTTATTTCACTGCTTCAG+AGG - chr3.1:84938202-84938221 MS.gene32631:intron 40.0%
GTGCATTTCTGTCAGACAAT+GGG - chr3.1:84937863-84937882 MS.gene32631:CDS 40.0%
GTTGCCAACAATTTCTGACA+AGG - chr3.1:84937387-84937406 MS.gene32631:CDS 40.0%
GTTGCTACCATTAGTGACAA+AGG - chr3.1:84937310-84937329 MS.gene32631:CDS 40.0%
GTTGCTGCAGATTTCATTCT+TGG + chr3.1:84937044-84937063 None:intergenic 40.0%
TATCTTTCTCGAAGCTTGGA+GGG - chr3.1:84937115-84937134 MS.gene32631:CDS 40.0%
TATGGCACTCTTCCAATTGT+AGG + chr3.1:84937927-84937946 None:intergenic 40.0%
TGAAGCAGTGAAATAAACCC+TGG + chr3.1:84938201-84938220 None:intergenic 40.0%
TGCATCAATCTGACAGATGT+AGG - chr3.1:84938261-84938280 MS.gene32631:intron 40.0%
TGCCATAGGATTACCCAATT+TGG - chr3.1:84937940-84937959 MS.gene32631:CDS 40.0%
TGTGCATTTCTGTCAGACAA+TGG - chr3.1:84937862-84937881 MS.gene32631:CDS 40.0%
TTTCTCGGTGACATTTGGAA+GGG + chr3.1:84937701-84937720 None:intergenic 40.0%
! AATGTCCCATTTGACTTCAG+TGG - chr3.1:84936866-84936885 MS.gene32631:CDS 40.0%
! ACCACGGTTTAAAATGACAC+CGG + chr3.1:84937971-84937990 None:intergenic 40.0%
! ACCTTCTAAGGATCTCAAAG+AGG + chr3.1:84936949-84936968 None:intergenic 40.0%
! CTTGGAGTGCTAAACCTTAA+TGG - chr3.1:84938318-84938337 MS.gene32631:intron 40.0%
! GGAGGTGATGATTTTTGTAC+TGG - chr3.1:84936746-84936765 MS.gene32631:CDS 40.0%
! TGTGTGTTTGATTTCTCAGG+AGG - chr3.1:84936728-84936747 MS.gene32631:CDS 40.0%
!! AAGCGAGATCTCTTTTGAAG+AGG + chr3.1:84936845-84936864 None:intergenic 40.0%
!! AGATGTAGGAGTTTTGTCCA+TGG - chr3.1:84938275-84938294 MS.gene32631:intron 40.0%
!! ATCTCAAAGAGGCATTCATC+AGG + chr3.1:84936938-84936957 None:intergenic 40.0%
!! CTCTGAAGTCTTTCACTCTT+TGG - chr3.1:84937284-84937303 MS.gene32631:CDS 40.0%
!! TACAATTGGAAGAGTGCCAT+AGG - chr3.1:84937926-84937945 MS.gene32631:CDS 40.0%
AAAATTGGGTGATTCCCTCG+AGG - chr3.1:84938536-84938555 MS.gene32631:intron 45.0%
AAATTGGGTGATTCCCTCGA+GGG - chr3.1:84938537-84938556 MS.gene32631:intron 45.0%
AAGCTCCTATCTTGTCCTTC+AGG + chr3.1:84936974-84936993 None:intergenic 45.0%
ACAAGCTTGTGGAACATCTC+TGG - chr3.1:84938604-84938623 MS.gene32631:intron 45.0%
ACACAATCTCGAGGAGGATT+AGG - chr3.1:84937181-84937200 MS.gene32631:CDS 45.0%
ACGCACAGTTAACAAGCTTG+TGG - chr3.1:84938593-84938612 MS.gene32631:intron 45.0%
AGACCTTCATTACCGATGCT+AGG + chr3.1:84937472-84937491 None:intergenic 45.0%
AGATTGTGTGCCAACAGCAA+TGG + chr3.1:84937170-84937189 None:intergenic 45.0%
AGCCCAATATCTGTTACTCC+AGG + chr3.1:84937790-84937809 None:intergenic 45.0%
AGGCTATCTTTCTCGAAGCT+TGG - chr3.1:84937111-84937130 MS.gene32631:CDS 45.0%
ATCCTTAGAAGGTTGCCTGA+AGG - chr3.1:84936956-84936975 MS.gene32631:CDS 45.0%
ATCTTTCTCGAAGCTTGGAG+GGG - chr3.1:84937116-84937135 MS.gene32631:CDS 45.0%
ATGTCACCGAGAAAGGATTC+TGG - chr3.1:84937707-84937726 MS.gene32631:CDS 45.0%
ATTTCTGTCAGACAATGGGC+TGG - chr3.1:84937867-84937886 MS.gene32631:CDS 45.0%
CAACTAACGTCGCTCACAAT+TGG - chr3.1:84937757-84937776 MS.gene32631:CDS 45.0%
CACAATCTCGAGGAGGATTA+GGG - chr3.1:84937182-84937201 MS.gene32631:CDS 45.0%
CATCACCCAGAATCCTTTCT+CGG + chr3.1:84937716-84937735 None:intergenic 45.0%
CCCCAAATTGGGTAATCCTA+TGG + chr3.1:84937945-84937964 None:intergenic 45.0%
CGAACAATGCAACTTGACCA+TGG + chr3.1:84938295-84938314 None:intergenic 45.0%
CTATCTTTCTCGAAGCTTGG+AGG - chr3.1:84937114-84937133 MS.gene32631:CDS 45.0%
CTGGATGTACTTTCTTTGGC+AGG - chr3.1:84938474-84938493 MS.gene32631:intron 45.0%
CTTACTCTGGTAAGCTGCTA+CGG - chr3.1:84938006-84938025 MS.gene32631:intron 45.0%
CTTCCAAATGTCACCGAGAA+AGG - chr3.1:84937700-84937719 MS.gene32631:CDS 45.0%
CTTGACTGATGTAGGTCTCA+AGG - chr3.1:84937240-84937259 MS.gene32631:CDS 45.0%
CTTGAGACCTACATCAGTCA+AGG + chr3.1:84937242-84937261 None:intergenic 45.0%
CTTTCTCGGTGACATTTGGA+AGG + chr3.1:84937702-84937721 None:intergenic 45.0%
GAGAAAGGATTCTGGGTGAT+GGG - chr3.1:84937715-84937734 MS.gene32631:CDS 45.0%
GATATTGGGCTTGAAGCTGT+AGG - chr3.1:84937799-84937818 MS.gene32631:CDS 45.0%
GCCCAATATCTGTTACTCCA+GGG + chr3.1:84937789-84937808 None:intergenic 45.0%
GCCCTGGAGTAACAGATATT+GGG - chr3.1:84937785-84937804 MS.gene32631:CDS 45.0%
GGCTTGATCGAGATTGCTAA+TGG - chr3.1:84937331-84937350 MS.gene32631:CDS 45.0%
TGCCCTGGAGTAACAGATAT+TGG - chr3.1:84937784-84937803 MS.gene32631:CDS 45.0%
TGTCACCGAGAAAGGATTCT+GGG - chr3.1:84937708-84937727 MS.gene32631:CDS 45.0%
TTACTCTGGTAAGCTGCTAC+GGG - chr3.1:84938007-84938026 MS.gene32631:intron 45.0%
TTATCAATCCGTAACTGCCC+TGG - chr3.1:84938087-84938106 MS.gene32631:intron 45.0%
TTCACTGCTTCAGAGGTCTA+AGG - chr3.1:84938209-84938228 MS.gene32631:intron 45.0%
TTCTTTGGCAGGTTGCTCAT+TGG - chr3.1:84938485-84938504 MS.gene32631:intron 45.0%
TTGAGGGAATAACAGACCCA+GGG - chr3.1:84938181-84938200 MS.gene32631:intron 45.0%
! ATTACCCAATTTGGGGTTGC+CGG - chr3.1:84937949-84937968 MS.gene32631:CDS 45.0%
! GAGCCTTCAATTTTGCACCA+CGG + chr3.1:84937987-84938006 None:intergenic 45.0%
!! CAACGCAAGTTCTGGAAACA+AGG - chr3.1:84937060-84937079 MS.gene32631:CDS 45.0%
!! GCAAGTTCTGGAAACAAGGA+CGG - chr3.1:84937064-84937083 MS.gene32631:CDS 45.0%
!! GCCTCTTTGAGATCCTTAGA+AGG - chr3.1:84936945-84936964 MS.gene32631:CDS 45.0%
!! TGTCCTAGCATCGGTAATGA+AGG - chr3.1:84937466-84937485 MS.gene32631:CDS 45.0%
AAGGGCAGAAATCCCTGCAT+CGG + chr3.1:84938433-84938452 None:intergenic 50.0%
ACATCAGTCAAGGCACGATC+TGG + chr3.1:84937232-84937251 None:intergenic 50.0%
ACGTTAGTTGCTGCAGTGCA+TGG + chr3.1:84937747-84937766 None:intergenic 50.0%
AGTGTGCAATCACCGATGCA+GGG - chr3.1:84938418-84938437 MS.gene32631:intron 50.0%
ATCTGCAGCAACGCAAGTTC+TGG - chr3.1:84937052-84937071 MS.gene32631:CDS 50.0%
ATTCCCTGATCACGAACTCC+AGG + chr3.1:84937550-84937569 None:intergenic 50.0%
CACAATTGATGGAGCAGCCT+TGG + chr3.1:84937902-84937921 None:intergenic 50.0%
CGAGAAAGGATTCTGGGTGA+TGG - chr3.1:84937714-84937733 MS.gene32631:CDS 50.0%
CTTGAGGGAATAACAGACCC+AGG - chr3.1:84938180-84938199 MS.gene32631:intron 50.0%
GAACAGGACTCCACGAGTAA+GGG + chr3.1:84938451-84938470 None:intergenic 50.0%
GATCGTGCCTTGACTGATGT+AGG - chr3.1:84937232-84937251 MS.gene32631:CDS 50.0%
GATGTACCTTAACCCGAAGG+AGG - chr3.1:84936775-84936794 MS.gene32631:CDS 50.0%
GGTTGCCTGAAGGACAAGAT+AGG - chr3.1:84936966-84936985 MS.gene32631:CDS 50.0%
GTCCTTCAGGCAACCTTCTA+AGG + chr3.1:84936961-84936980 None:intergenic 50.0%
GTCGATGTACCTTAACCCGA+AGG - chr3.1:84936772-84936791 MS.gene32631:CDS 50.0%
GTCTGACATGGAGATACTGC+TGG + chr3.1:84938057-84938076 None:intergenic 50.0%
GTTCGTGATCAGGGAATTGC+TGG - chr3.1:84937553-84937572 MS.gene32631:CDS 50.0%
TACCAACTCCAGGGCAGTTA+CGG + chr3.1:84938098-84938117 None:intergenic 50.0%
TCGAAGCTTGGAGGGGAAAA+AGG - chr3.1:84937123-84937142 MS.gene32631:CDS 50.0%
TCGTGGAGTCCTGTTCAATC+TGG - chr3.1:84938455-84938474 MS.gene32631:intron 50.0%
TGAACAGGACTCCACGAGTA+AGG + chr3.1:84938452-84938471 None:intergenic 50.0%
TGTCCTGGAGTTCGTGATCA+GGG - chr3.1:84937544-84937563 MS.gene32631:CDS 50.0%
! AGACTAGCTGCCATTGCTGT+TGG - chr3.1:84937157-84937176 MS.gene32631:CDS 50.0%
! CAGAGGTCTAAGGCCAGTTT+GGG - chr3.1:84938219-84938238 MS.gene32631:intron 50.0%
! TCAGAGGTCTAAGGCCAGTT+TGG - chr3.1:84938218-84938237 MS.gene32631:intron 50.0%
! TGCATCGGTGATTGCACACT+CGG + chr3.1:84938418-84938437 None:intergenic 50.0%
!! GGATTCTGGGTGATGGGTAA+TGG - chr3.1:84937721-84937740 MS.gene32631:CDS 50.0%
!!! GCCGGTGTCATTTTAAACCG+TGG - chr3.1:84937967-84937986 MS.gene32631:CDS 50.0%
AAGAAGACACCCGCCTCCTT+CGG + chr3.1:84936791-84936810 None:intergenic 55.0%
ATCCGTAACTGCCCTGGAGT+TGG - chr3.1:84938093-84938112 MS.gene32631:intron 55.0%
CTGTCCTGGAGTTCGTGATC+AGG - chr3.1:84937543-84937562 MS.gene32631:CDS 55.0%
GACACCGGCAACCCCAAATT+GGG + chr3.1:84937956-84937975 None:intergenic 55.0%
GAGTGTGCAATCACCGATGC+AGG - chr3.1:84938417-84938436 MS.gene32631:intron 55.0%
GCATAGGACAGAGCTTCCCA+AGG + chr3.1:84938137-84938156 None:intergenic 55.0%
GCGGGTGTCTTCTTGTCTCT+TGG - chr3.1:84936797-84936816 MS.gene32631:CDS 55.0%
GCTGTTGGCACACAATCTCG+AGG - chr3.1:84937172-84937191 MS.gene32631:CDS 55.0%
GGGATTTCTGCCCTTACTCG+TGG - chr3.1:84938438-84938457 MS.gene32631:intron 55.0%
GGGCTTGAAGCTGTAGGGAA+GGG - chr3.1:84937805-84937824 MS.gene32631:CDS 55.0%
GGTCTCAAGGCAGTTGCTCA+TGG - chr3.1:84937253-84937272 MS.gene32631:CDS 55.0%
GTACCTTAACCCGAAGGAGG+CGG - chr3.1:84936778-84936797 MS.gene32631:CDS 55.0%
GTGCTTCTGTATCCAAGCGC+TGG - chr3.1:84936996-84937015 MS.gene32631:CDS 55.0%
GTTGGCACACAATCTCGAGG+AGG - chr3.1:84937175-84937194 MS.gene32631:CDS 55.0%
TACCTTAACCCGAAGGAGGC+GGG - chr3.1:84936779-84936798 MS.gene32631:CDS 55.0%
TGACACCGGCAACCCCAAAT+TGG + chr3.1:84937957-84937976 None:intergenic 55.0%
TGGGCTTGAAGCTGTAGGGA+AGG - chr3.1:84937804-84937823 MS.gene32631:CDS 55.0%
!! TGGGCTGGTATCGTTCACCA+AGG - chr3.1:84937882-84937901 MS.gene32631:CDS 55.0%
AGAAGACACCCGCCTCCTTC+GGG + chr3.1:84936790-84936809 None:intergenic 60.0%
CTCACAATTGGGCTGTGCCC+TGG - chr3.1:84937769-84937788 MS.gene32631:CDS 60.0%
! TAGAAGCGTGAGCCAGCGCT+TGG + chr3.1:84937011-84937030 None:intergenic 60.0%
! CACCCGCCTCCTTCGGGTTA+AGG + chr3.1:84936784-84936803 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 84936110 84938647 84936110 ID=MS.gene32631
chr3.1 mRNA 84936110 84938647 84936110 ID=MS.gene32631.t1;Parent=MS.gene32631
chr3.1 exon 84938623 84938647 84938623 ID=MS.gene32631.t1.exon1;Parent=MS.gene32631.t1
chr3.1 CDS 84938623 84938647 84938623 ID=cds.MS.gene32631.t1;Parent=MS.gene32631.t1
chr3.1 exon 84936110 84938010 84936110 ID=MS.gene32631.t1.exon2;Parent=MS.gene32631.t1
chr3.1 CDS 84936110 84938010 84936110 ID=cds.MS.gene32631.t1;Parent=MS.gene32631.t1
Gene Sequence

>MS.gene32631

ATGTCTAAAGTTCTCAGCTTTACCGGTAAGCTTTTGATTTGGTTCATGTTTCATCTGATTATTGGTTTTAGCTGTCGAGTTTTGATTCTGTTATTTTATAATGTTTGTTATCATAGATATGAATTTGATGTTTTGATTTTAGTTTTCTGTGTTCTATATTGATTTGTTATGATTTCTATTTTAGTTTTGGTAATTAAATCTACTTTTTTGGTGGATCTGATTAGTGATATAGACAATTTAATTTTATTTATTTTGAGATAGTATATAATTTGGCATGAAATTGTTTTAATAATTTGCTTTTAGTGACGATAAAAGATAATTTTGTTGGTAGTTGTTATATGTATTTTGTGGGAAATGAATCATGTTCACATATATGATAGATAGTTTTGTATGCATATGAGATCAATAATTTTGCTCAAAATTGATTTGATCAGTAATTTTGCTCAAAATTCATTTGTGTTGGATTTCTTTAATATGTCTAGTTATGTGTTTTGGTCAATTTAATTTTTTTGTTTGGTTGTGTTCAAATCTTTTACTCAGATTATATAATACTCATTCATGTGGTTTTACTGGTAGAGTTTTTATGTTTCTCTAATTTTATTTTTTTTATTTACCTTGTGTGTGTTTGATTTCTCAGGAGGTGATGATTTTTGTACTGGAAGGTCGATGTACCTTAACCCGAAGGAGGCGGGTGTCTTCTTGTCTCTTGGCCGTCAAGAATATGCTTACAGACCTCTTCAAAAGAGATCTCGCTTCAATGTCCCATTTGACTTCAGTGGAGAAAAATGGTTTGAGCAGAAGCTAGAGACATCTATTGAAACATTGCCTGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGAAGGACAAGATAGGAGCTTATGTGCTTCTGTATCCAAGCGCTGGCTCACGCTTCTAAGCAGTATTTCCAAGAATGAAATCTGCAGCAACGCAAGTTCTGGAAACAAGGACGGTGACAATCAAGAATTTGGTGATGTAGGCTATCTTTCTCGAAGCTTGGAGGGGAAAAAGGCAACAGATGTCAGACTAGCTGCCATTGCTGTTGGCACACAATCTCGAGGAGGATTAGGGAAGCTTTCAATTCATGGAAGCAATCCAGATCGTGCCTTGACTGATGTAGGTCTCAAGGCAGTTGCTCATGGCTGCCCTTCTCTGAAGTCTTTCACTCTTTGGGATGTTGCTACCATTAGTGACAAAGGCTTGATCGAGATTGCTAATGGTTGTCATCAGATAGAGGAGCTTGACCTATGCAAGTTGCCAACAATTTCTGACAAGGCTTTGATTGCAGTTGCAAAGCACTGTCCGAATCTGACTGAGTTATCGATAGAGTCATGTCCTAGCATCGGTAATGAAGGTCTACATGCTATTGGAAAGTTGTGTCCAAATCTAAGGTCCGTATCAATTAAAAACTGTCCTGGAGTTCGTGATCAGGGAATTGCTGGCCTATTATGTTCAGCATCCATTATTCTAAAAAAGCTGACACTTGAATCGCTAGCTGTTTCTGATTACTCACTAGCAGTTATTGGACAATATGGCTTTGTGGTTACTGATCTTGTCTTAAATTCCCTTCCAAATGTCACCGAGAAAGGATTCTGGGTGATGGGTAATGGCCATGCACTGCAGCAACTAACGTCGCTCACAATTGGGCTGTGCCCTGGAGTAACAGATATTGGGCTTGAAGCTGTAGGGAAGGGTTGTCCAAATGTGAAAAACTTTCAGCTTCGTAGGTGTGCATTTCTGTCAGACAATGGGCTGGTATCGTTCACCAAGGCTGCTCCATCAATTGTGAGCCTACAATTGGAAGAGTGCCATAGGATTACCCAATTTGGGGTTGCCGGTGTCATTTTAAACCGTGGTGCAAAATTGAAGGCTCTTACTCTGGTAAGCTGCTACGGGATCAAAGATCTGAATCTCAATTTGCCAGCAGTATCTCCATGTCAGACAATTTCGTCATTATCAATCCGTAACTGCCCTGGAGTTGGTAATTTTACTCTCAACGTCCTTGGGAAGCTCTGTCCTATGCTTCAGTGTCTTGAATTGATTGGACTTGAGGGAATAACAGACCCAGGGTTTATTTCACTGCTTCAGAGGTCTAAGGCCAGTTTGGGTAATGTTAATCTAAGTGGTTGCATCAATCTGACAGATGTAGGAGTTTTGTCCATGGTCAAGTTGCATTGTTCGACTCTTGGAGTGCTAAACCTTAATGGTTGTAAAAAGGTCGGGGATGCTTCCTTGACAGCAATTGCAGACAATTGCATTGTCTTGAGTGATCTTGATGTTTCCGAGTGTGCAATCACCGATGCAGGGATTTCTGCCCTTACTCGTGGAGTCCTGTTCAATCTGGATGTACTTTCTTTGGCAGGTTGCTCATTGGTTTCAAACAAGAGCTTGTCTGCTTTGAAAAAATTGGGTGATTCCCTCGAGGGATTAAATATAAAAAATTGCAATTCGATCAGCAGACGCACAGTTAACAAGCTTGTGGAACATCTCTGGATGTGTGACATCCTCTTCTGA
Protein sequence

>MS.gene32631.t1

MSKVLSFTGGDDFCTGRSMYLNPKEAGVFLSLGRQEYAYRPLQKRSRFNVPFDFSGEKWFEQKLETSIETLPDECLFEILRRLPEGQDRSLCASVSKRWLTLLSSISKNEICSNASSGNKDGDNQEFGDVGYLSRSLEGKKATDVRLAAIAVGTQSRGGLGKLSIHGSNPDRALTDVGLKAVAHGCPSLKSFTLWDVATISDKGLIEIANGCHQIEELDLCKLPTISDKALIAVAKHCPNLTELSIESCPSIGNEGLHAIGKLCPNLRSVSIKNCPGVRDQGIAGLLCSASIILKKLTLESLAVSDYSLAVIGQYGFVVTDLVLNSLPNVTEKGFWVMGNGHALQQLTSLTIGLCPGVTDIGLEAVGKGCPNVKNFQLRRCAFLSDNGLVSFTKAAPSIVSLQLEECHRITQFGVAGVILNRGAKLKALTLVSCYGIKDLNLNLPAVSPCQTISSLSIRNCPGVGNFTLNVLGKLCPMLQCLELIGLEGITDPGFISLLQRSKASLGNVNLSGCINLTDVGVLSMVKLHCSTLGVLNLNGCKKVGDASLTAIADNCIVLSDLDVSECAITDAGISALTRGVLFNLDVLSLAGCSLVSNKSLSALKKLGDSLEGLNIKNCNSISRRTVNKLVEHLWMCDILF