AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32680.t1 MTR_3g106290 97.354 189 5 0 1 189 1 189 3.16e-139 386
MS.gene32680.t1 MTR_4g008860 66.146 192 57 3 1 184 1 192 4.80e-77 229
MS.gene32680.t1 MTR_4g010640 58.586 99 26 1 6 89 5 103 2.33e-34 121
MS.gene32680.t1 MTR_4g114570 58.947 95 28 1 6 89 5 99 7.30e-33 117
MS.gene32680.t1 MTR_2g103700 65.556 90 25 1 6 89 5 94 3.25e-32 114
MS.gene32680.t1 MTR_3g074130 38.095 147 77 3 1 139 143 283 7.58e-24 96.3
MS.gene32680.t1 MTR_8g092460 56.164 73 32 0 3 75 140 212 1.10e-23 95.5
MS.gene32680.t1 MTR_2g078680 48.598 107 42 3 7 100 30 136 1.32e-23 93.2
MS.gene32680.t1 MTR_8g090350 55.422 83 29 2 2 77 107 188 5.54e-23 93.2
MS.gene32680.t1 MTR_1g090170 56.790 81 34 1 8 87 152 232 7.25e-23 93.6
MS.gene32680.t1 MTR_5g062700 52.874 87 38 1 3 86 168 254 7.86e-23 94.0
MS.gene32680.t1 MTR_2g089170 71.930 57 16 0 8 64 65 121 8.47e-23 90.5
MS.gene32680.t1 MTR_1g012470 37.681 207 80 5 5 175 4 197 9.96e-23 90.5
MS.gene32680.t1 MTR_1g090170 57.500 80 33 1 8 86 239 318 1.52e-22 93.6
MS.gene32680.t1 MTR_3g053690 63.333 60 22 0 5 64 24 83 5.65e-22 89.4
MS.gene32680.t1 MTR_7g020980 64.912 57 20 0 8 64 51 107 8.06e-22 87.8
MS.gene32680.t1 MTR_3g107380 64.000 75 27 0 1 75 1 75 8.34e-22 88.6
MS.gene32680.t1 MTR_7g021010 64.912 57 20 0 8 64 51 107 1.05e-21 87.4
MS.gene32680.t1 MTR_7g021010 64.912 57 20 0 8 64 12 68 1.11e-21 86.3
MS.gene32680.t1 MTR_4g078710 57.143 70 29 1 8 76 28 97 1.28e-21 88.2
MS.gene32680.t1 MTR_6g012970 56.471 85 32 2 3 86 33 113 2.19e-21 90.5
MS.gene32680.t1 MTR_2g435590 55.072 69 31 0 8 76 96 164 2.55e-21 88.2
MS.gene32680.t1 MTR_2g090235 60.563 71 21 1 1 64 204 274 3.28e-21 90.1
MS.gene32680.t1 MTR_2g014340 59.016 61 25 0 5 65 16 76 7.68e-21 85.9
MS.gene32680.t1 MTR_0939s0010 66.667 57 19 0 8 64 65 121 1.27e-20 85.1
MS.gene32680.t1 MTR_7g084370 58.904 73 30 0 7 79 41 113 1.51e-20 86.7
MS.gene32680.t1 MTR_7g011630 51.163 86 40 1 3 88 37 120 1.83e-20 88.2
MS.gene32680.t1 MTR_5g083340 63.333 60 22 0 5 64 82 141 2.27e-20 87.8
MS.gene32680.t1 MTR_5g082950 66.667 57 19 0 7 63 65 121 2.69e-20 86.7
MS.gene32680.t1 MTR_7g092190 63.793 58 21 0 8 65 30 87 3.43e-20 85.9
MS.gene32680.t1 MTR_4g086220 66.667 57 19 0 8 64 96 152 4.37e-20 84.3
MS.gene32680.t1 MTR_2g105380 48.837 86 38 2 5 84 114 199 5.34e-20 86.3
MS.gene32680.t1 MTR_2g014300 61.667 60 23 0 8 67 15 74 6.24e-20 82.8
MS.gene32680.t1 MTR_8g022820 54.412 68 31 0 5 72 120 187 8.66e-20 85.9
MS.gene32680.t1 MTR_1g087920 61.404 57 22 0 8 64 77 133 8.94e-20 85.1
MS.gene32680.t1 MTR_8g022820 54.412 68 31 0 5 72 121 188 9.07e-20 85.9
MS.gene32680.t1 MTR_8g022820 54.412 68 31 0 5 72 121 188 9.07e-20 85.9
MS.gene32680.t1 MTR_4g086160 64.912 57 20 0 8 64 96 152 1.02e-19 83.6
MS.gene32680.t1 MTR_4g086165 61.667 60 23 0 5 64 79 138 1.17e-19 82.8
MS.gene32680.t1 MTR_5g083330 56.944 72 28 1 5 76 32 100 1.24e-19 84.3
MS.gene32680.t1 MTR_4g086190 64.912 57 20 0 8 64 96 152 2.03e-19 82.8
MS.gene32680.t1 MTR_4g111915 58.333 60 25 0 5 64 50 109 2.57e-19 80.1
MS.gene32680.t1 MTR_5g009620 52.632 76 35 1 4 79 108 182 3.26e-19 83.6
MS.gene32680.t1 MTR_5g032820 66.102 59 20 0 7 65 45 103 5.09e-19 83.6
MS.gene32680.t1 MTR_1g014780 31.638 177 106 3 8 169 38 214 5.69e-19 81.6
MS.gene32680.t1 MTR_8g099215 48.889 90 44 1 6 93 105 194 1.11e-18 82.0
MS.gene32680.t1 MTR_4g112490 58.333 60 25 0 5 64 50 109 1.16e-18 80.1
MS.gene32680.t1 MTR_4g082345 60.656 61 24 0 3 63 43 103 1.23e-18 82.0
MS.gene32680.t1 MTR_5g012910 63.158 57 21 0 8 64 28 84 1.57e-18 79.3
MS.gene32680.t1 MTR_2g016730 58.065 62 26 0 2 63 17 78 2.11e-18 81.6
MS.gene32680.t1 MTR_4g100380 60.938 64 24 1 6 68 143 206 2.28e-18 80.5
MS.gene32680.t1 MTR_6g088405 64.912 57 20 0 8 64 44 100 2.29e-18 79.7
MS.gene32680.t1 MTR_5g085100 60.345 58 23 0 7 64 45 102 2.37e-18 80.9
MS.gene32680.t1 MTR_3g110205 64.912 57 20 0 8 64 43 99 2.49e-18 79.0
MS.gene32680.t1 MTR_4g035430 63.158 57 21 0 8 64 32 88 2.74e-18 79.3
MS.gene32680.t1 MTR_5g075570 53.125 64 30 0 1 64 117 180 3.18e-18 80.5
MS.gene32680.t1 MTR_7g085810 62.069 58 22 0 6 63 28 85 3.92e-18 79.7
MS.gene32680.t1 MTR_8g069360 64.407 59 21 0 7 65 43 101 4.23e-18 81.3
MS.gene32680.t1 MTR_8g006815 54.286 70 29 2 6 72 94 163 6.68e-18 77.8
MS.gene32680.t1 MTR_5g085070 60.345 58 23 0 7 64 50 107 7.92e-18 79.3
MS.gene32680.t1 MTR_8g085960 43.617 94 50 1 1 94 18 108 8.00e-18 78.6
MS.gene32680.t1 MTR_7g046260 64.912 57 20 0 8 64 61 117 9.09e-18 78.2
MS.gene32680.t1 MTR_8g013860 59.677 62 25 0 8 69 47 108 9.75e-18 77.8
MS.gene32680.t1 MTR_7g117690 59.649 57 23 0 8 64 28 84 9.88e-18 77.0
MS.gene32680.t1 MTR_3g090760 58.621 58 24 0 6 63 111 168 1.10e-17 79.7
MS.gene32680.t1 MTR_8g102800 64.912 57 20 0 8 64 37 93 1.14e-17 78.2
MS.gene32680.t1 MTR_4g100650 63.158 57 21 0 8 64 74 130 1.25e-17 78.6
MS.gene32680.t1 MTR_2g043050 55.000 60 27 0 8 67 19 78 2.12e-17 77.0
MS.gene32680.t1 MTR_1g014860 56.667 60 26 0 8 67 22 81 2.49e-17 77.0
MS.gene32680.t1 MTR_4g119270 54.688 64 29 0 7 70 52 115 2.59e-17 78.6
MS.gene32680.t1 MTR_4g100420 46.512 86 41 2 5 89 154 235 3.05e-17 78.2
MS.gene32680.t1 MTR_1g014820 36.090 133 62 3 8 140 27 136 3.43e-17 77.4
MS.gene32680.t1 MTR_1g014800 31.016 187 84 6 8 185 31 181 4.46e-17 76.3
MS.gene32680.t1 MTR_7g070220 58.730 63 19 1 8 63 78 140 4.83e-17 78.6
MS.gene32680.t1 MTR_4g100450 56.923 65 27 1 5 68 151 215 5.01e-17 77.4
MS.gene32680.t1 MTR_1g070070 56.250 64 27 1 7 69 20 83 5.76e-17 74.3
MS.gene32680.t1 MTR_3g102100 56.140 57 25 0 8 64 45 101 5.80e-17 74.7
MS.gene32680.t1 MTR_8g027465 57.895 57 24 0 8 64 39 95 6.93e-17 74.7
MS.gene32680.t1 MTR_6g029180 57.627 59 25 0 5 63 30 88 7.31e-17 77.0
MS.gene32680.t1 MTR_2g101340 61.404 57 22 0 8 64 41 97 1.03e-16 75.1
MS.gene32680.t1 MTR_5g016750 53.333 60 28 0 5 64 22 81 1.20e-16 74.3
MS.gene32680.t1 MTR_8g006410 61.404 57 22 0 8 64 52 108 1.38e-16 74.7
MS.gene32680.t1 MTR_1g048610 54.839 62 27 1 6 66 87 148 1.39e-16 75.1
MS.gene32680.t1 MTR_2g043030 53.333 60 28 0 8 67 19 78 1.40e-16 74.7
MS.gene32680.t1 MTR_8g032610 58.621 58 24 0 6 63 25 82 2.09e-16 75.9
MS.gene32680.t1 MTR_2g019750 36.842 114 65 2 7 120 49 155 2.12e-16 75.5
MS.gene32680.t1 MTR_4g088005 53.968 63 28 1 5 66 54 116 2.59e-16 72.0
MS.gene32680.t1 MTR_3g105510 43.590 78 41 1 3 77 32 109 3.30e-16 74.3
MS.gene32680.t1 MTR_1g097190 53.521 71 31 2 2 71 17 86 3.78e-16 72.0
MS.gene32680.t1 MTR_1g028560 50.000 74 35 1 5 76 112 185 4.26e-16 75.1
MS.gene32680.t1 MTR_1g074310 54.688 64 28 1 2 64 15 78 4.75e-16 71.6
MS.gene32680.t1 MTR_8g006840 49.296 71 35 1 8 77 125 195 9.68e-16 72.4
MS.gene32680.t1 MTR_2g015040 54.098 61 27 1 5 64 60 120 1.67e-15 70.5
MS.gene32680.t1 MTR_1g019110 54.386 57 26 0 8 64 44 100 1.80e-15 71.2
MS.gene32680.t1 MTR_2g043040 51.667 60 29 0 8 67 19 78 2.19e-15 72.0
MS.gene32680.t1 MTR_2g015050 53.968 63 28 1 3 64 129 191 3.53e-15 72.0
MS.gene32680.t1 MTR_4g054360 56.897 58 24 1 8 64 124 181 4.39e-15 71.6
MS.gene32680.t1 MTR_1g090290 50.704 71 28 2 1 64 100 170 6.59e-15 70.1
MS.gene32680.t1 MTR_4g054740 55.172 58 25 1 8 64 97 154 7.01e-15 70.5
MS.gene32680.t1 MTR_7g081815 52.459 61 28 1 6 65 59 119 7.57e-15 70.1
MS.gene32680.t1 MTR_2g438180 59.322 59 23 1 7 64 13 71 9.02e-15 68.2
MS.gene32680.t1 MTR_7g096750 57.377 61 25 1 5 64 17 77 1.15e-14 68.2
MS.gene32680.t1 MTR_7g081795 52.459 61 28 1 6 65 58 118 1.17e-14 69.3
MS.gene32680.t1 MTR_7g081805 52.459 61 28 1 6 65 59 119 1.29e-14 69.3
MS.gene32680.t1 MTR_1g070035 51.613 62 29 1 5 65 74 135 1.31e-14 69.7
MS.gene32680.t1 MTR_1g074230 56.250 64 27 1 7 69 18 81 2.16e-14 67.4
MS.gene32680.t1 MTR_8g006825 50.820 61 29 1 6 65 94 154 2.43e-14 68.6
MS.gene32680.t1 MTR_7g096700 56.667 60 25 1 7 65 19 78 2.97e-14 67.0
MS.gene32680.t1 MTR_2g043020 50.000 60 30 0 8 67 19 78 3.44e-14 68.2
MS.gene32680.t1 MTR_1g101600 38.462 130 68 4 8 132 41 163 3.56e-14 68.2
MS.gene32680.t1 MTR_6g465460 60.714 56 22 0 8 63 54 109 3.69e-14 69.3
MS.gene32680.t1 MTR_6g465850 60.714 56 22 0 8 63 63 118 4.10e-14 68.9
MS.gene32680.t1 MTR_6g465510 60.714 56 22 0 8 63 33 88 4.48e-14 67.8
MS.gene32680.t1 MTR_3g105480 46.479 71 35 1 10 77 33 103 5.24e-14 68.2
MS.gene32680.t1 MTR_6g465450 58.929 56 23 0 8 63 54 109 6.16e-14 68.2
MS.gene32680.t1 MTR_5g008590 68.421 57 18 0 8 64 11 67 6.65e-14 67.0
MS.gene32680.t1 MTR_6g465690 58.929 56 23 0 8 63 63 118 6.87e-14 68.2
MS.gene32680.t1 MTR_6g465530 60.714 56 22 0 8 63 33 88 7.77e-14 67.0
MS.gene32680.t1 MTR_6g466130 58.929 56 23 0 8 63 66 121 1.07e-13 67.4
MS.gene32680.t1 MTR_6g466000 58.929 56 23 0 8 63 57 112 1.35e-13 67.0
MS.gene32680.t1 MTR_1g105400 46.774 62 32 1 3 64 110 170 1.64e-13 68.2
MS.gene32680.t1 MTR_1g069985 53.333 60 27 1 5 63 72 131 1.76e-13 66.6
MS.gene32680.t1 MTR_6g465430 58.929 56 23 0 8 63 54 109 2.15e-13 66.6
MS.gene32680.t1 MTR_6g465420 57.143 56 24 0 8 63 54 109 4.35e-13 66.2
MS.gene32680.t1 MTR_1g006660 65.517 58 20 0 8 65 47 104 4.37e-13 65.9
MS.gene32680.t1 MTR_7g028925 53.333 60 25 1 8 67 29 85 5.73e-13 62.4
MS.gene32680.t1 MTR_1g070015 54.386 57 25 1 8 63 84 140 7.24e-13 65.1
MS.gene32680.t1 MTR_3g095190 62.903 62 23 0 5 66 167 228 7.48e-13 66.2
MS.gene32680.t1 MTR_6g088425 66.667 57 19 0 8 64 49 105 7.83e-13 65.1
MS.gene32680.t1 MTR_1g074250 53.333 60 26 1 7 64 18 77 7.98e-13 62.8
MS.gene32680.t1 MTR_4g054860 36.154 130 75 4 9 134 132 257 8.55e-13 65.5
MS.gene32680.t1 MTR_1g070020 50.000 62 30 1 3 63 65 126 9.44e-13 64.7
MS.gene32680.t1 MTR_1g070000 54.545 55 24 1 10 63 86 140 1.13e-12 64.3
MS.gene32680.t1 MTR_3g112440 57.377 61 26 0 4 64 35 95 1.49e-12 64.3
MS.gene32680.t1 MTR_1g023170 59.649 57 23 0 8 64 40 96 1.60e-12 64.7
MS.gene32680.t1 MTR_5g085125 40.449 89 51 1 7 93 15 103 1.62e-12 63.2
MS.gene32680.t1 MTR_8g023680 57.447 47 19 1 7 53 115 160 2.17e-12 64.7
MS.gene32680.t1 MTR_1g070045 54.386 57 25 1 8 63 66 122 2.27e-12 62.8
MS.gene32680.t1 MTR_1g110970 57.447 47 19 1 7 53 96 141 3.79e-12 63.9
MS.gene32680.t1 MTR_1g069960 58.333 72 29 1 5 75 24 95 4.70e-12 61.2
MS.gene32680.t1 MTR_3g098580 64.912 57 20 0 8 64 76 132 4.84e-12 63.2
MS.gene32680.t1 MTR_5g008790 49.206 63 26 2 6 64 16 76 7.25e-12 61.2
MS.gene32680.t1 MTR_7g096810 51.852 81 29 2 5 75 10 90 7.93e-12 60.1
MS.gene32680.t1 MTR_6g466020 53.571 56 26 0 8 63 43 98 9.80e-12 61.2
MS.gene32680.t1 MTR_4g102670 54.386 57 25 1 8 64 15 70 1.03e-11 60.8
MS.gene32680.t1 MTR_5g008470 54.545 55 25 0 10 64 77 131 1.18e-11 60.8
MS.gene32680.t1 MTR_3g072610 55.072 69 30 1 5 73 22 89 1.72e-11 61.2
MS.gene32680.t1 MTR_8g023700 58.537 41 17 0 8 48 117 157 1.74e-11 62.4
MS.gene32680.t1 MTR_5g057810 55.556 45 20 0 3 47 83 127 3.29e-11 61.2
MS.gene32680.t1 MTR_5g057647 55.556 45 20 0 3 47 83 127 3.29e-11 61.2
MS.gene32680.t1 MTR_5g058470 60.656 61 23 1 5 64 93 153 4.21e-11 60.8
MS.gene32680.t1 MTR_4g009260 64.407 59 21 0 5 63 74 132 4.41e-11 59.7
MS.gene32680.t1 MTR_2g085015 54.237 59 25 2 8 64 47 105 7.92e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32680.t1 AT5G25190 66.321 193 48 3 1 189 1 180 3.74e-83 244
MS.gene32680.t1 AT1G15360 72.464 69 19 0 6 74 5 73 2.34e-32 115
MS.gene32680.t1 AT1G15360 72.464 69 19 0 6 74 5 73 2.34e-32 115
MS.gene32680.t1 AT5G25390 43.316 187 77 10 6 176 5 178 8.68e-30 108
MS.gene32680.t1 AT5G25390 42.246 187 76 11 6 176 5 175 1.78e-26 100
MS.gene32680.t1 AT1G78080 42.657 143 75 3 2 143 146 282 3.72e-24 97.1
MS.gene32680.t1 AT1G22190 52.941 85 37 1 2 86 77 158 9.23e-24 94.7
MS.gene32680.t1 AT5G65130 53.571 84 37 1 3 86 106 187 2.47e-23 94.0
MS.gene32680.t1 AT5G65130 53.571 84 37 1 3 86 108 189 2.83e-23 94.0
MS.gene32680.t1 AT1G36060 51.648 91 39 2 1 86 136 226 1.70e-22 92.4
MS.gene32680.t1 AT3G15210 67.241 58 19 0 7 64 24 81 1.84e-22 90.5
MS.gene32680.t1 AT4G13620 52.747 91 31 2 4 94 228 306 2.36e-22 93.2
MS.gene32680.t1 AT4G39780 66.667 60 20 0 5 64 90 149 6.79e-22 90.1
MS.gene32680.t1 AT5G11190 58.242 91 24 1 6 82 5 95 7.44e-22 88.2
MS.gene32680.t1 AT2G22200 61.905 63 24 0 2 64 65 127 8.31e-22 89.7
MS.gene32680.t1 AT3G20310 48.352 91 43 1 5 95 24 110 9.45e-22 89.4
MS.gene32680.t1 AT5G44210 61.290 62 24 0 3 64 28 89 4.89e-21 86.3
MS.gene32680.t1 AT5G13910 57.534 73 31 0 7 79 19 91 8.53e-21 85.9
MS.gene32680.t1 AT3G11020 68.421 57 18 0 8 64 78 134 1.10e-20 87.8
MS.gene32680.t1 AT5G13330 62.903 62 22 1 4 64 34 95 2.18e-20 84.7
MS.gene32680.t1 AT1G21910 45.794 107 44 2 8 114 50 142 2.20e-20 85.1
MS.gene32680.t1 AT2G40340 38.971 136 80 1 8 143 14 146 3.11e-20 85.9
MS.gene32680.t1 AT2G40340 38.971 136 80 1 8 143 14 146 3.11e-20 85.9
MS.gene32680.t1 AT2G40340 38.971 136 80 1 8 143 14 146 3.11e-20 85.9
MS.gene32680.t1 AT5G05410 51.220 82 39 1 8 89 79 159 3.21e-20 86.3
MS.gene32680.t1 AT1G28370 60.317 63 24 1 7 68 19 81 3.49e-20 83.2
MS.gene32680.t1 AT2G20880 66.667 57 19 0 8 64 187 243 3.71e-20 86.3
MS.gene32680.t1 AT1G28370 60.317 63 24 1 7 68 57 119 3.71e-20 84.0
MS.gene32680.t1 AT5G05410 51.220 82 39 1 8 89 79 159 4.36e-20 86.3
MS.gene32680.t1 AT5G61890 64.912 57 20 0 8 64 90 146 4.60e-20 84.7
MS.gene32680.t1 AT1G28360 63.158 57 21 0 8 64 12 68 4.64e-20 83.6
MS.gene32680.t1 AT1G50640 60.000 60 24 0 7 66 27 86 5.15e-20 84.3
MS.gene32680.t1 AT2G40340 38.971 136 80 1 8 143 72 204 6.80e-20 85.9
MS.gene32680.t1 AT1G03800 60.345 58 23 0 7 64 52 109 7.91e-20 84.0
MS.gene32680.t1 AT2G40340 38.971 136 80 1 8 143 79 211 7.95e-20 85.5
MS.gene32680.t1 AT1G72360 58.621 58 24 0 7 64 24 81 8.20e-20 83.2
MS.gene32680.t1 AT1G24590 66.102 59 20 0 7 65 57 115 1.01e-19 84.7
MS.gene32680.t1 AT1G19210 55.385 65 29 0 5 69 9 73 1.04e-19 82.4
MS.gene32680.t1 AT2G47520 53.623 69 31 1 8 76 50 117 1.14e-19 82.0
MS.gene32680.t1 AT1G12980 48.889 90 46 0 7 96 56 145 1.20e-19 85.1
MS.gene32680.t1 AT1G72360 58.621 58 24 0 7 64 73 130 2.29e-19 83.2
MS.gene32680.t1 AT2G33710 60.000 60 24 0 5 64 67 126 2.36e-19 82.4
MS.gene32680.t1 AT1G72360 58.621 58 24 0 7 64 75 132 2.49e-19 83.2
MS.gene32680.t1 AT1G71450 53.488 86 36 1 8 89 24 109 2.67e-19 81.3
MS.gene32680.t1 AT2G33710 60.000 60 24 0 5 64 67 126 3.29e-19 82.0
MS.gene32680.t1 AT2G40340 49.367 79 37 1 8 86 72 147 3.42e-19 83.2
MS.gene32680.t1 AT4G32800 65.000 60 21 0 5 64 16 75 4.31e-19 81.6
MS.gene32680.t1 AT4G06746 55.000 60 27 0 5 64 33 92 5.38e-19 79.7
MS.gene32680.t1 AT1G12890 57.812 64 27 0 7 70 20 83 5.86e-19 81.3
MS.gene32680.t1 AT1G74930 55.556 63 28 0 5 67 18 80 6.14e-19 80.5
MS.gene32680.t1 AT3G16280 66.667 57 19 0 8 64 61 117 8.17e-19 81.3
MS.gene32680.t1 AT3G16280 66.667 57 19 0 8 64 79 135 1.07e-18 81.3
MS.gene32680.t1 AT2G35700 64.912 57 20 0 8 64 45 101 1.13e-18 80.1
MS.gene32680.t1 AT4G27950 58.730 63 26 0 5 67 115 177 1.26e-18 82.0
MS.gene32680.t1 AT5G19790 60.294 68 26 1 7 73 21 88 1.63e-18 80.9
MS.gene32680.t1 AT4G16750 61.667 60 23 0 5 64 37 96 1.75e-18 79.0
MS.gene32680.t1 AT5G18560 60.656 61 24 0 7 67 54 114 2.17e-18 81.6
MS.gene32680.t1 AT2G44940 66.667 57 19 0 8 64 100 156 2.39e-18 80.9
MS.gene32680.t1 AT4G11140 51.389 72 32 1 6 74 85 156 2.66e-18 80.9
MS.gene32680.t1 AT5G21960 57.377 61 26 0 7 67 6 66 2.69e-18 79.3
MS.gene32680.t1 AT5G11590 66.667 57 19 0 8 64 51 107 2.70e-18 79.7
MS.gene32680.t1 AT5G47220 53.333 75 34 1 6 79 115 189 2.79e-18 80.1
MS.gene32680.t1 AT1G28160 53.425 73 34 0 7 79 38 110 3.00e-18 79.7
MS.gene32680.t1 AT4G17500 60.938 64 24 1 6 68 146 209 3.76e-18 80.1
MS.gene32680.t1 AT3G16770 57.895 57 24 0 8 64 79 135 4.24e-18 79.7
MS.gene32680.t1 AT3G57600 44.681 94 46 2 7 94 27 120 4.46e-18 80.1
MS.gene32680.t1 AT4G28140 61.404 57 22 0 8 64 143 199 5.43e-18 80.1
MS.gene32680.t1 AT4G23750 50.000 66 33 0 5 70 119 184 1.04e-17 79.7
MS.gene32680.t1 AT4G23750 50.000 66 33 0 5 70 119 184 1.04e-17 79.7
MS.gene32680.t1 AT2G25820 64.912 57 20 0 8 64 26 82 1.34e-17 77.8
MS.gene32680.t1 AT5G25810 63.158 57 21 0 8 64 36 92 1.54e-17 77.4
MS.gene32680.t1 AT3G61630 62.069 58 22 0 6 63 103 160 1.62e-17 79.0
MS.gene32680.t1 AT5G53290 60.345 58 23 0 6 63 123 180 2.51e-17 79.0
MS.gene32680.t1 AT3G60490 63.158 57 21 0 8 64 71 127 3.60e-17 77.0
MS.gene32680.t1 AT1G75490 57.895 57 24 0 8 64 42 98 4.82e-17 75.9
MS.gene32680.t1 AT5G18450 39.048 105 64 0 8 112 34 138 5.35e-17 77.4
MS.gene32680.t1 AT4G36900 56.140 57 25 0 8 64 30 86 5.53e-17 75.5
MS.gene32680.t1 AT1G01250 59.649 57 23 0 8 64 45 101 6.58e-17 75.1
MS.gene32680.t1 AT5G47230 57.377 61 25 1 5 64 153 213 9.24e-17 76.6
MS.gene32680.t1 AT2G23340 56.140 57 25 0 8 64 28 84 9.44e-17 74.3
MS.gene32680.t1 AT3G23230 54.167 72 30 2 5 73 17 88 1.16e-16 73.2
MS.gene32680.t1 AT5G67190 44.872 78 43 0 8 85 21 98 1.47e-16 74.3
MS.gene32680.t1 AT1G22985 52.000 75 32 2 5 76 72 145 1.69e-16 73.6
MS.gene32680.t1 AT4G25490 66.071 56 19 0 8 63 48 103 1.75e-16 74.7
MS.gene32680.t1 AT2G46310 59.649 57 23 0 7 63 98 154 1.87e-16 75.9
MS.gene32680.t1 AT2G40350 53.333 60 28 0 8 67 74 133 2.21e-16 73.2
MS.gene32680.t1 AT5G51190 44.706 85 46 1 5 88 69 153 2.41e-16 74.3
MS.gene32680.t1 AT1G46768 54.386 57 26 0 8 64 31 87 2.44e-16 72.4
MS.gene32680.t1 AT2G40350 53.333 60 28 0 8 67 67 126 2.45e-16 72.8
MS.gene32680.t1 AT1G46768 54.386 57 26 0 8 64 31 87 2.62e-16 72.8
MS.gene32680.t1 AT1G46768 54.386 57 26 0 8 64 31 87 2.62e-16 72.8
MS.gene32680.t1 AT4G31060 39.831 118 63 3 8 117 27 144 3.68e-16 73.2
MS.gene32680.t1 AT2G44840 53.030 66 27 2 4 65 85 150 5.50e-16 73.6
MS.gene32680.t1 AT5G43410 52.239 67 31 1 7 72 14 80 6.11e-16 71.2
MS.gene32680.t1 AT1G68550 34.615 130 74 3 2 127 107 229 6.93e-16 74.7
MS.gene32680.t1 AT1G68550 34.615 130 74 3 2 127 107 229 6.93e-16 74.7
MS.gene32680.t1 AT4G25470 64.286 56 20 0 8 63 51 106 7.45e-16 72.8
MS.gene32680.t1 AT4G17490 55.738 61 26 1 5 64 134 194 8.41e-16 73.9
MS.gene32680.t1 AT5G07580 58.333 60 24 1 8 66 110 169 1.38e-15 72.0
MS.gene32680.t1 AT3G50260 50.877 57 28 0 8 64 21 77 1.88e-15 70.5
MS.gene32680.t1 AT4G25480 62.500 56 21 0 8 63 51 106 2.47e-15 71.6
MS.gene32680.t1 AT5G61600 50.725 69 33 1 8 75 88 156 3.58e-15 71.6
MS.gene32680.t1 AT1G71130 52.239 67 27 1 2 63 73 139 5.11e-15 69.7
MS.gene32680.t1 AT1G22810 31.655 139 67 4 5 139 11 125 1.36e-14 68.2
MS.gene32680.t1 AT5G64750 59.259 54 22 0 13 66 190 243 1.36e-14 71.2
MS.gene32680.t1 AT5G51990 60.714 56 22 0 8 63 54 109 2.16e-14 69.3
MS.gene32680.t1 AT2G36450 60.345 58 22 1 8 64 15 72 3.23e-14 67.8
MS.gene32680.t1 AT2G38340 55.072 69 23 1 4 64 66 134 6.70e-14 68.2
MS.gene32680.t1 AT5G07310 43.333 90 51 0 8 97 92 181 7.28e-14 68.2
MS.gene32680.t1 AT3G23240 51.613 62 29 1 3 63 77 138 8.57e-14 67.4
MS.gene32680.t1 AT1G53170 51.250 80 39 0 7 86 30 109 9.47e-14 66.6
MS.gene32680.t1 AT1G43160 62.121 66 24 1 1 66 55 119 1.07e-13 66.6
MS.gene32680.t1 AT1G71520 47.761 67 27 2 5 65 11 75 1.85e-13 65.1
MS.gene32680.t1 AT2G31230 50.820 61 29 1 5 64 83 143 3.38e-13 66.2
MS.gene32680.t1 AT1G77200 61.905 63 24 0 2 64 37 99 3.74e-13 66.2
MS.gene32680.t1 AT4G34410 62.687 67 25 0 8 74 136 202 3.88e-13 66.2
MS.gene32680.t1 AT3G25890 71.053 38 11 0 10 47 133 170 3.93e-13 67.0
MS.gene32680.t1 AT3G25890 71.053 38 11 0 10 47 133 170 3.93e-13 67.0
MS.gene32680.t1 AT4G18450 55.000 60 25 2 6 63 108 167 6.46e-13 65.9
MS.gene32680.t1 AT2G40220 68.421 57 18 0 7 63 54 110 1.07e-12 65.5
MS.gene32680.t1 AT3G14230 43.103 116 60 2 5 119 121 231 1.10e-12 65.9
MS.gene32680.t1 AT3G14230 43.103 116 60 2 5 119 120 230 1.12e-12 65.9
MS.gene32680.t1 AT3G14230 43.103 116 60 2 5 119 125 235 1.13e-12 65.9
MS.gene32680.t1 AT1G77640 61.017 59 23 0 6 64 41 99 1.82e-12 64.3
MS.gene32680.t1 AT5G50080 63.333 60 22 0 5 64 83 142 2.59e-12 63.5
MS.gene32680.t1 AT5G50080 63.333 60 22 0 5 64 74 133 2.73e-12 63.5
MS.gene32680.t1 AT1G53910 52.564 78 36 1 5 82 120 196 3.96e-12 63.9
MS.gene32680.t1 AT1G53910 61.667 60 23 0 5 64 122 181 4.02e-12 63.9
MS.gene32680.t1 AT1G53910 61.667 60 23 0 5 64 122 181 4.02e-12 63.9
MS.gene32680.t1 AT1G33760 38.346 133 66 3 5 130 17 140 5.02e-12 62.0
MS.gene32680.t1 AT1G63030 51.786 56 27 0 8 63 30 85 7.06e-12 61.6
MS.gene32680.t1 AT1G63030 51.786 56 27 0 8 63 30 85 7.06e-12 61.6
MS.gene32680.t1 AT1G64380 41.176 119 65 1 1 119 129 242 1.53e-11 62.4
MS.gene32680.t1 AT1G12610 50.000 56 28 0 8 63 30 85 4.98e-11 59.7
MS.gene32680.t1 AT1G44830 61.667 60 22 1 6 64 33 92 7.19e-11 59.3

Find 37 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAGGAATTGCTTCATTA+TGG 0.265059 3.1:-84351375 MS.gene32680:CDS
TCACAGTAGTATCAATTTCT+TGG 0.266761 3.1:+84351508 None:intergenic
CAATATGGGGTGGCGAATTT+CGG 0.312981 3.1:+84352051 None:intergenic
TGAGGCTGTTGCAGAGATAT+TGG 0.340722 3.1:+84351588 None:intergenic
AAAAGAATCAGAGGGAAATT+GGG 0.351339 3.1:-84351472 MS.gene32680:CDS
GACAAAGGCATTGGGGCTCT+TGG 0.365987 3.1:-84352078 MS.gene32680:CDS
TAGAGGAATTGCTTCATTAT+GGG 0.393664 3.1:-84351374 MS.gene32680:CDS
AGGCGTCCGACAAAGGCATT+GGG 0.410359 3.1:-84352086 MS.gene32680:CDS
ACAAAGGCATTGGGGCTCTT+GGG 0.427788 3.1:-84352077 MS.gene32680:CDS
TGTGACACATTGGGGTTGTA+AGG 0.432124 3.1:+84351693 None:intergenic
GAGGCGTCCGACAAAGGCAT+TGG 0.472374 3.1:-84352087 MS.gene32680:CDS
AAGAGCCCCAATGCCTTTGT+CGG 0.476653 3.1:+84352080 None:intergenic
CAAGACTAATGTGTGGTACA+AGG 0.476857 3.1:-84351731 MS.gene32680:CDS
TTTCATGGGAACATTGTTTG+TGG 0.482813 3.1:+84351536 None:intergenic
GGGTTTCAAGAAAGTTAAAG+TGG 0.487028 3.1:-84351451 MS.gene32680:CDS
GATGATGATTGTGACACATT+GGG 0.489977 3.1:+84351684 None:intergenic
TCACATTGAACAAATGATAG+AGG 0.493691 3.1:-84351391 MS.gene32680:CDS
AATGCCTTTGTCGGACGCCT+CGG 0.517800 3.1:+84352089 None:intergenic
GGTGTCTAGACTTACAATAT+GGG 0.524604 3.1:+84352037 None:intergenic
AAAGAATCAGAGGGAAATTG+GGG 0.542505 3.1:-84351471 MS.gene32680:CDS
TCAATGTGATCTTCTTCAAG+AGG 0.543478 3.1:+84351405 None:intergenic
GTGACACATTGGGGTTGTAA+GGG 0.555765 3.1:+84351694 None:intergenic
GTGTTTCACTTTCATGTCTG+TGG 0.565586 3.1:+84351324 None:intergenic
TTTCACTTTCATGTCTGTGG+TGG 0.585069 3.1:+84351327 None:intergenic
AGATGATGATTGTGACACAT+TGG 0.587146 3.1:+84351683 None:intergenic
GTTACCGAGGCGTCCGACAA+AGG 0.593207 3.1:-84352093 MS.gene32680:CDS
TACTACTGTGAAACATGAAG+AGG 0.604839 3.1:-84351496 MS.gene32680:CDS
ACGCCTCGGTAACGTTGTTG+TGG 0.609578 3.1:+84352103 None:intergenic
TAAACTGCATAGATGTTACA+TGG 0.615055 3.1:-84351631 MS.gene32680:CDS
AAGACTAATGTGTGGTACAA+GGG 0.623635 3.1:-84351730 MS.gene32680:CDS
ATGATGATTGTGACACATTG+GGG 0.665424 3.1:+84351685 None:intergenic
TGGCTTCATTGCAAATCACA+AGG 0.668334 3.1:-84351611 MS.gene32680:CDS
GTGTCTAGACTTACAATATG+GGG 0.673317 3.1:+84352038 None:intergenic
TCTAGACTTACAATATGGGG+TGG 0.685523 3.1:+84352041 None:intergenic
GGCGTCCGACAAAGGCATTG+GGG 0.701891 3.1:-84352085 MS.gene32680:CDS
AGACCACAACAACGTTACCG+AGG 0.703547 3.1:-84352106 MS.gene32680:CDS
GAAGCAGCAAGACTAATGTG+TGG 0.733704 3.1:-84351738 MS.gene32680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTTAACAAAATCACGA+TGG + chr3.1:84351434-84351453 None:intergenic 25.0%
AAAAAGAATCAGAGGGAAAT+TGG - chr3.1:84351974-84351993 MS.gene32680:intron 30.0%
AAAAGAATCAGAGGGAAATT+GGG - chr3.1:84351975-84351994 MS.gene32680:intron 30.0%
ATAGAGGAATTGCTTCATTA+TGG - chr3.1:84352072-84352091 MS.gene32680:CDS 30.0%
TAAACTGCATAGATGTTACA+TGG - chr3.1:84351816-84351835 MS.gene32680:intron 30.0%
TAGAGGAATTGCTTCATTAT+GGG - chr3.1:84352073-84352092 MS.gene32680:CDS 30.0%
TCACAGTAGTATCAATTTCT+TGG + chr3.1:84351942-84351961 None:intergenic 30.0%
TCACATTGAACAAATGATAG+AGG - chr3.1:84352056-84352075 MS.gene32680:CDS 30.0%
TCATTATGTGCAGAAAAACT+AGG - chr3.1:84351635-84351654 MS.gene32680:CDS 30.0%
! ACAGTTACTACTATCTTTTG+AGG + chr3.1:84351508-84351527 None:intergenic 30.0%
!!! AATTTCTTGGCTACTTTTCA+TGG + chr3.1:84351929-84351948 None:intergenic 30.0%
!!! ATTTCTTGGCTACTTTTCAT+GGG + chr3.1:84351928-84351947 None:intergenic 30.0%
!!! CTTTTTGAAGATTGTTTCTG+AGG + chr3.1:84351880-84351899 None:intergenic 30.0%
AAAGAATCAGAGGGAAATTG+GGG - chr3.1:84351976-84351995 MS.gene32680:intron 35.0%
AAGACTAATGTGTGGTACAA+GGG - chr3.1:84351717-84351736 MS.gene32680:CDS 35.0%
AGAAAAACTAGGATATGGCT+TGG - chr3.1:84351646-84351665 MS.gene32680:CDS 35.0%
AGATGATGATTGTGACACAT+TGG + chr3.1:84351767-84351786 None:intergenic 35.0%
ATGATGATTGTGACACATTG+GGG + chr3.1:84351765-84351784 None:intergenic 35.0%
GAAGAGGAAAAAGAATCAGA+GGG - chr3.1:84351967-84351986 MS.gene32680:intron 35.0%
GATGATGATTGTGACACATT+GGG + chr3.1:84351766-84351785 None:intergenic 35.0%
GGGTTTCAAGAAAGTTAAAG+TGG - chr3.1:84351996-84352015 MS.gene32680:intron 35.0%
GGTGTCTAGACTTACAATAT+GGG + chr3.1:84351413-84351432 None:intergenic 35.0%
GTGTCTAGACTTACAATATG+GGG + chr3.1:84351412-84351431 None:intergenic 35.0%
TACTACTGTGAAACATGAAG+AGG - chr3.1:84351951-84351970 MS.gene32680:intron 35.0%
TCAATGTGATCTTCTTCAAG+AGG + chr3.1:84352045-84352064 None:intergenic 35.0%
TGAAGAGGAAAAAGAATCAG+AGG - chr3.1:84351966-84351985 MS.gene32680:intron 35.0%
TGGTGTCTAGACTTACAATA+TGG + chr3.1:84351414-84351433 None:intergenic 35.0%
TGTGCAGAAAAACTAGGATA+TGG - chr3.1:84351641-84351660 MS.gene32680:CDS 35.0%
TTTCATGGGAACATTGTTTG+TGG + chr3.1:84351914-84351933 None:intergenic 35.0%
!!! ATCTTTTGAGGCTATGAGTT+TGG + chr3.1:84351496-84351515 None:intergenic 35.0%
CAAGACTAATGTGTGGTACA+AGG - chr3.1:84351716-84351735 MS.gene32680:CDS 40.0%
TCTAGACTTACAATATGGGG+TGG + chr3.1:84351409-84351428 None:intergenic 40.0%
TGGCTTCATTGCAAATCACA+AGG - chr3.1:84351836-84351855 MS.gene32680:intron 40.0%
!!! TGGTACTTTTGAAACTGCAG+AGG - chr3.1:84351666-84351685 MS.gene32680:CDS 40.0%
CAATATGGGGTGGCGAATTT+CGG + chr3.1:84351399-84351418 None:intergenic 45.0%
CTATGAGTTTGGCAGGATCA+CGG + chr3.1:84351485-84351504 None:intergenic 45.0%
GAAGCAGCAAGACTAATGTG+TGG - chr3.1:84351709-84351728 MS.gene32680:CDS 45.0%
GTGACACATTGGGGTTGTAA+GGG + chr3.1:84351756-84351775 None:intergenic 45.0%
TGAGGCTGTTGCAGAGATAT+TGG + chr3.1:84351862-84351881 None:intergenic 45.0%
TGTGACACATTGGGGTTGTA+AGG + chr3.1:84351757-84351776 None:intergenic 45.0%
! TTTGAGGCTATGAGTTTGGC+AGG + chr3.1:84351492-84351511 None:intergenic 45.0%
AAGAGCCCCAATGCCTTTGT+CGG + chr3.1:84351370-84351389 None:intergenic 50.0%
AGACCACAACAACGTTACCG+AGG - chr3.1:84351341-84351360 MS.gene32680:CDS 50.0%
!! ACAAAGGCATTGGGGCTCTT+GGG - chr3.1:84351370-84351389 MS.gene32680:CDS 50.0%
AATGCCTTTGTCGGACGCCT+CGG + chr3.1:84351361-84351380 None:intergenic 55.0%
ACGCCTCGGTAACGTTGTTG+TGG + chr3.1:84351347-84351366 None:intergenic 55.0%
!! AGGCGTCCGACAAAGGCATT+GGG - chr3.1:84351361-84351380 MS.gene32680:CDS 55.0%
!! GACAAAGGCATTGGGGCTCT+TGG - chr3.1:84351369-84351388 MS.gene32680:CDS 55.0%
! GAGGCGTCCGACAAAGGCAT+TGG - chr3.1:84351360-84351379 MS.gene32680:CDS 60.0%
! GTTACCGAGGCGTCCGACAA+AGG - chr3.1:84351354-84351373 MS.gene32680:CDS 60.0%
!! GGCGTCCGACAAAGGCATTG+GGG - chr3.1:84351362-84351381 MS.gene32680:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 84351335 84352134 84351335 ID=MS.gene32680
chr3.1 mRNA 84351335 84352134 84351335 ID=MS.gene32680.t1;Parent=MS.gene32680
chr3.1 exon 84352052 84352134 84352052 ID=MS.gene32680.t1.exon1;Parent=MS.gene32680.t1
chr3.1 CDS 84352052 84352134 84352052 ID=cds.MS.gene32680.t1;Parent=MS.gene32680.t1
chr3.1 exon 84351335 84351821 84351335 ID=MS.gene32680.t1.exon2;Parent=MS.gene32680.t1
chr3.1 CDS 84351335 84351821 84351335 ID=cds.MS.gene32680.t1;Parent=MS.gene32680.t1
Gene Sequence

>MS.gene32680

ATGGCTAGACCACAACAACGTTACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGTAAGTCTAGACACCATCGTGATTTTGTTAAAACTTAACGCATGTAAAAAAAATCATTAGTACACCGTGATCCTGCCAAACTCATAGCCTCAAAAGATAGTAGTAACTGTTTTGAGTTTTGACACATTACATATATGCACATTTCACATTTCTTTAGAAGCATATTCATTTCAAGTCATTAATTAATTATGAATGAAAAGTTATAACATGTTTTTTTTCATTATGTGCAGAAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCAGAGGATGCAGCTAGAGCATACGATGAAGCAGCAAGACTAATGTGTGGTACAAGGGCAAGAACAAATTTCCCTTACAACCCCAATGTGTCACAATCATCATCTTCTAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCATAGATGTTACATGGCTTCATTGCAAATCACAAGGCCAATATCTCTGCAACAGCCTCAGAAACAATCTTCAAAAAGTGTAAACATATCCACAAACAATGTTCCCATGAAAAGTAGCCAAGAAATTGATACTACTGTGAAACATGAAGAGGAAAAAGAATCAGAGGGAAATTGGGGTTTCAAGAAAGTTAAAGTGGAAAATTCTCAGCAATTTATTAAGCCTCTTGAAGAAGATCACATTGAACAAATGATAGAGGAATTGCTTCATTATGGGTCTATTGAGCTTTGTTCTGTTTTTCCACCACAGACATGA

Protein sequence

>MS.gene32680.t1

MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISLQQPQKQSSKSVNISTNNVPMKSSQEIDTTVKHEEEKESEGNWGFKKVKVENSQQFIKPLEEDHIEQMIEELLHYGSIELCSVFPPQT