Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32690.t1 | XP_003603305.1 | 93.9 | 495 | 30 | 0 | 1 | 495 | 1 | 495 | 4.20E-237 | 830.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32690.t1 | Q9C7G1 | 25.6 | 359 | 224 | 10 | 93 | 423 | 403 | 746 | 7.2e-20 | 100.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32690.t1 | G7J9V6 | 93.9 | 495 | 30 | 0 | 1 | 495 | 1 | 495 | 3.0e-237 | 830.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene32690 | 0.823528 | 1.32E-53 | -1.69E-46 |
| MS.gene049418 | MS.gene32690 | 0.825756 | 3.94E-54 | -1.69E-46 |
| MS.gene049824 | MS.gene32690 | 0.802924 | 4.45E-49 | -1.69E-46 |
| MS.gene051021 | MS.gene32690 | 0.805178 | 1.51E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene32690 | 0.805447 | 1.33E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene32690 | 0.839034 | 2.02E-57 | -1.69E-46 |
| MS.gene053171 | MS.gene32690 | 0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene32690 | 0.842446 | 2.57E-58 | -1.69E-46 |
| MS.gene055537 | MS.gene32690 | 0.829642 | 4.59E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene32690 | -0.818242 | 2.17E-52 | -1.69E-46 |
| MS.gene056169 | MS.gene32690 | 0.804784 | 1.83E-49 | -1.69E-46 |
| MS.gene056228 | MS.gene32690 | 0.818927 | 1.52E-52 | -1.69E-46 |
| MS.gene057082 | MS.gene32690 | 0.817278 | 3.58E-52 | -1.69E-46 |
| MS.gene058197 | MS.gene32690 | 0.809437 | 1.89E-50 | -1.69E-46 |
| MS.gene058198 | MS.gene32690 | 0.800871 | 1.18E-48 | -1.69E-46 |
| MS.gene060587 | MS.gene32690 | 0.800752 | 1.24E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32690.t1 | MTR_3g106140 | 97.172 | 495 | 14 | 0 | 1 | 495 | 1 | 495 | 0.0 | 980 |
| MS.gene32690.t1 | MTR_1g014420 | 63.985 | 522 | 154 | 7 | 1 | 495 | 1 | 515 | 0.0 | 545 |
| MS.gene32690.t1 | MTR_2g015870 | 32.124 | 386 | 231 | 6 | 110 | 495 | 86 | 440 | 9.98e-42 | 154 |
| MS.gene32690.t1 | MTR_8g080280 | 31.290 | 310 | 192 | 8 | 95 | 394 | 411 | 709 | 1.99e-29 | 122 |
| MS.gene32690.t1 | MTR_4g485520 | 30.094 | 319 | 207 | 7 | 79 | 394 | 174 | 479 | 1.39e-26 | 112 |
| MS.gene32690.t1 | MTR_4g485520 | 30.094 | 319 | 207 | 7 | 79 | 394 | 342 | 647 | 1.97e-26 | 113 |
| MS.gene32690.t1 | MTR_4g063800 | 31.488 | 289 | 178 | 8 | 108 | 391 | 351 | 624 | 2.09e-26 | 113 |
| MS.gene32690.t1 | MTR_5g079550 | 32.721 | 272 | 166 | 6 | 128 | 394 | 38 | 297 | 2.86e-26 | 110 |
| MS.gene32690.t1 | MTR_5g069340 | 34.799 | 273 | 161 | 5 | 128 | 394 | 52 | 313 | 9.57e-25 | 105 |
| MS.gene32690.t1 | MTR_1g018180 | 28.814 | 295 | 196 | 6 | 110 | 402 | 61 | 343 | 1.41e-24 | 105 |
| MS.gene32690.t1 | MTR_1g069845 | 30.137 | 292 | 188 | 7 | 107 | 394 | 317 | 596 | 6.85e-24 | 105 |
| MS.gene32690.t1 | MTR_1g069845 | 30.137 | 292 | 188 | 7 | 107 | 394 | 438 | 717 | 8.80e-24 | 105 |
| MS.gene32690.t1 | MTR_1g069845 | 30.137 | 292 | 188 | 7 | 107 | 394 | 434 | 713 | 8.92e-24 | 105 |
| MS.gene32690.t1 | MTR_3g466220 | 31.834 | 289 | 180 | 7 | 109 | 394 | 531 | 805 | 1.23e-23 | 105 |
| MS.gene32690.t1 | MTR_3g466220 | 31.834 | 289 | 180 | 7 | 109 | 394 | 552 | 826 | 1.62e-23 | 104 |
| MS.gene32690.t1 | MTR_7g059405 | 30.526 | 285 | 186 | 5 | 107 | 391 | 358 | 630 | 2.31e-23 | 103 |
| MS.gene32690.t1 | MTR_3g085610 | 29.221 | 308 | 197 | 8 | 96 | 394 | 412 | 707 | 8.26e-23 | 102 |
| MS.gene32690.t1 | MTR_7g097020 | 28.618 | 304 | 200 | 8 | 105 | 404 | 474 | 764 | 1.03e-22 | 102 |
| MS.gene32690.t1 | MTR_1g094215 | 31.973 | 294 | 186 | 6 | 108 | 399 | 160 | 441 | 3.99e-22 | 99.4 |
| MS.gene32690.t1 | MTR_3g067685 | 29.714 | 350 | 210 | 9 | 126 | 469 | 56 | 375 | 5.33e-22 | 98.2 |
| MS.gene32690.t1 | MTR_7g078330 | 31.250 | 288 | 184 | 6 | 105 | 390 | 362 | 637 | 6.57e-22 | 99.8 |
| MS.gene32690.t1 | MTR_1g094215 | 31.973 | 294 | 186 | 6 | 108 | 399 | 343 | 624 | 1.29e-21 | 98.6 |
| MS.gene32690.t1 | MTR_6g004790 | 30.822 | 292 | 181 | 8 | 111 | 394 | 3 | 281 | 3.05e-19 | 89.0 |
| MS.gene32690.t1 | MTR_3g103050 | 27.063 | 303 | 201 | 9 | 110 | 405 | 51 | 340 | 1.28e-17 | 84.3 |
| MS.gene32690.t1 | MTR_3g078340 | 26.299 | 308 | 208 | 6 | 89 | 394 | 196 | 486 | 2.28e-16 | 82.0 |
| MS.gene32690.t1 | MTR_2g026130 | 27.517 | 298 | 202 | 6 | 99 | 394 | 164 | 449 | 1.13e-15 | 79.7 |
| MS.gene32690.t1 | MTR_2g018010 | 26.102 | 295 | 186 | 8 | 113 | 394 | 399 | 674 | 1.63e-13 | 73.6 |
| MS.gene32690.t1 | MTR_5g083030 | 27.444 | 266 | 164 | 6 | 89 | 334 | 367 | 623 | 1.00e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32690.t1 | AT4G31890 | 60.300 | 534 | 157 | 13 | 1 | 495 | 1 | 518 | 0.0 | 553 |
| MS.gene32690.t1 | AT4G31890 | 60.300 | 534 | 157 | 13 | 1 | 495 | 1 | 518 | 0.0 | 553 |
| MS.gene32690.t1 | AT4G31890 | 60.300 | 534 | 157 | 13 | 1 | 495 | 1 | 518 | 0.0 | 553 |
| MS.gene32690.t1 | AT2G25130 | 58.696 | 506 | 160 | 10 | 1 | 495 | 1 | 468 | 5.53e-179 | 510 |
| MS.gene32690.t1 | AT2G27430 | 31.877 | 389 | 233 | 8 | 110 | 495 | 79 | 438 | 1.22e-41 | 154 |
| MS.gene32690.t1 | AT2G23140 | 29.250 | 400 | 244 | 11 | 15 | 394 | 247 | 627 | 1.52e-30 | 125 |
| MS.gene32690.t1 | AT2G23140 | 29.250 | 400 | 244 | 11 | 15 | 394 | 247 | 627 | 1.52e-30 | 125 |
| MS.gene32690.t1 | AT2G23140 | 29.250 | 400 | 244 | 11 | 15 | 394 | 439 | 819 | 2.69e-30 | 125 |
| MS.gene32690.t1 | AT2G23140 | 29.250 | 400 | 244 | 11 | 15 | 394 | 436 | 816 | 3.05e-30 | 125 |
| MS.gene32690.t1 | AT2G23140 | 29.250 | 400 | 244 | 11 | 15 | 394 | 436 | 816 | 3.05e-30 | 125 |
| MS.gene32690.t1 | AT1G67530 | 30.142 | 282 | 177 | 6 | 124 | 397 | 440 | 709 | 5.77e-27 | 115 |
| MS.gene32690.t1 | AT1G67530 | 30.142 | 282 | 177 | 6 | 124 | 397 | 440 | 709 | 5.77e-27 | 115 |
| MS.gene32690.t1 | AT1G67530 | 30.142 | 282 | 177 | 6 | 124 | 397 | 440 | 709 | 5.77e-27 | 115 |
| MS.gene32690.t1 | AT1G24330 | 29.316 | 307 | 200 | 6 | 118 | 418 | 434 | 729 | 1.81e-25 | 110 |
| MS.gene32690.t1 | AT1G24330 | 29.316 | 307 | 200 | 6 | 118 | 418 | 434 | 729 | 1.81e-25 | 110 |
| MS.gene32690.t1 | AT3G46510 | 33.088 | 272 | 162 | 8 | 125 | 391 | 369 | 625 | 2.20e-25 | 110 |
| MS.gene32690.t1 | AT3G54790 | 30.282 | 284 | 184 | 7 | 113 | 394 | 441 | 712 | 3.04e-25 | 110 |
| MS.gene32690.t1 | AT5G67340 | 29.653 | 317 | 207 | 7 | 79 | 394 | 396 | 697 | 3.52e-25 | 109 |
| MS.gene32690.t1 | AT5G67340 | 29.653 | 317 | 207 | 7 | 79 | 394 | 396 | 697 | 3.52e-25 | 109 |
| MS.gene32690.t1 | AT3G54790 | 30.068 | 296 | 192 | 8 | 113 | 405 | 477 | 760 | 4.50e-25 | 109 |
| MS.gene32690.t1 | AT3G54790 | 30.068 | 296 | 192 | 8 | 113 | 405 | 477 | 760 | 4.50e-25 | 109 |
| MS.gene32690.t1 | AT2G28830 | 31.023 | 303 | 187 | 10 | 109 | 403 | 284 | 572 | 1.41e-24 | 107 |
| MS.gene32690.t1 | AT3G03440 | 26.829 | 369 | 231 | 10 | 110 | 470 | 66 | 403 | 2.08e-23 | 102 |
| MS.gene32690.t1 | AT1G23030 | 29.514 | 288 | 188 | 6 | 110 | 394 | 333 | 608 | 2.15e-22 | 101 |
| MS.gene32690.t1 | AT1G27910 | 25.627 | 359 | 224 | 10 | 93 | 423 | 403 | 746 | 9.42e-22 | 99.4 |
| MS.gene32690.t1 | AT1G71020 | 30.822 | 292 | 186 | 7 | 107 | 394 | 192 | 471 | 2.09e-21 | 97.4 |
| MS.gene32690.t1 | AT1G71020 | 30.822 | 292 | 186 | 7 | 107 | 394 | 340 | 619 | 2.82e-21 | 97.8 |
| MS.gene32690.t1 | AT3G01400 | 27.152 | 302 | 200 | 8 | 110 | 408 | 64 | 348 | 3.40e-20 | 92.4 |
| MS.gene32690.t1 | AT5G58680 | 29.963 | 267 | 166 | 7 | 124 | 388 | 77 | 324 | 1.08e-19 | 90.9 |
| MS.gene32690.t1 | AT3G54850 | 31.802 | 283 | 179 | 6 | 122 | 402 | 359 | 629 | 1.34e-19 | 92.4 |
| MS.gene32690.t1 | AT4G12710 | 30.928 | 291 | 184 | 5 | 112 | 394 | 49 | 330 | 1.46e-18 | 88.2 |
| MS.gene32690.t1 | AT5G42340 | 30.263 | 304 | 198 | 6 | 90 | 391 | 361 | 652 | 2.47e-18 | 88.6 |
| MS.gene32690.t1 | AT5G65200 | 29.044 | 272 | 174 | 6 | 132 | 394 | 248 | 509 | 9.65e-18 | 86.7 |
| MS.gene32690.t1 | AT4G16490 | 28.333 | 300 | 199 | 7 | 99 | 394 | 174 | 461 | 1.34e-16 | 82.8 |
| MS.gene32690.t1 | AT5G14510 | 30.075 | 266 | 170 | 8 | 135 | 394 | 24 | 279 | 3.99e-16 | 79.7 |
| MS.gene32690.t1 | AT5G62560 | 26.298 | 289 | 200 | 5 | 109 | 394 | 235 | 513 | 4.18e-15 | 78.2 |
Find 0 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCATATTCTTAATTTTG+TGG | + | 24279:48595-48614 | MS.gene32690:intron | 15.0% |
| !! | GAATATGATAAATTCATGAT+TGG | - | 24279:48586-48605 | None:intergenic | 20.0% |
| !! | GATTAAACACAAAAATTTCA+CGG | - | 24279:48675-48694 | None:intergenic | 20.0% |
| !!! | TTAATCTTTATTTGTTTCTG+TGG | + | 24279:48689-48708 | MS.gene32690:intron | 20.0% |
| !!! | TTCATACATTTTGATGATTA+TGG | + | 24279:49206-49225 | MS.gene32690:CDS | 20.0% |
| ! | GATTCTAACAAACCAATAAT+TGG | + | 24279:48850-48869 | MS.gene32690:CDS | 25.0% |
| !! | GACGAATATTTCATTTGTTT+TGG | + | 24279:48993-49012 | MS.gene32690:CDS | 25.0% |
| !!! | AATGTTTTAGGCTAGATAAA+GGG | + | 24279:49346-49365 | MS.gene32690:CDS | 25.0% |
| !!! | AATTTTTCAGAGTTCTAACT+AGG | - | 24279:48897-48916 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTGGAAACTGATA+TGG | + | 24279:49005-49024 | MS.gene32690:CDS | 25.0% |
| !!! | TTTTGGTTGATGTATTGAAT+TGG | + | 24279:49154-49173 | MS.gene32690:CDS | 25.0% |
| AAAGCAGCGATTGTTAAAAT+TGG | + | 24279:48727-48746 | MS.gene32690:CDS | 30.0% | |
| AAGTTAAACAAGATGCTCTT+CGG | + | 24279:48944-48963 | MS.gene32690:CDS | 30.0% | |
| ACATGATGAAAATTGTCAAG+AGG | + | 24279:49556-49575 | MS.gene32690:CDS | 30.0% | |
| CATGATGAAAATTGTCAAGA+GGG | + | 24279:49557-49576 | MS.gene32690:CDS | 30.0% | |
| CTATATGCTTTACTCAATCT+CGG | + | 24279:48445-48464 | MS.gene32690:CDS | 30.0% | |
| ! | AAAAGCTATTAGTGCTGTTA+AGG | + | 24279:49119-49138 | MS.gene32690:CDS | 30.0% |
| ! | CAAGGATATTGCAATGTTTT+AGG | + | 24279:49334-49353 | MS.gene32690:CDS | 30.0% |
| ! | TAAGGATGCAATCACAATTT+TGG | + | 24279:49137-49156 | MS.gene32690:CDS | 30.0% |
| !! | CAATGTTTTAGGCTAGATAA+AGG | + | 24279:49345-49364 | MS.gene32690:CDS | 30.0% |
| AAACCAATAATTGGATCCTC+TGG | + | 24279:48859-48878 | MS.gene32690:CDS | 35.0% | |
| ACAGGTTCATGAAACAAATG+CGG | + | 24279:48207-48226 | MS.gene32690:CDS | 35.0% | |
| AGTTAAACAAGATGCTCTTC+GGG | + | 24279:48945-48964 | MS.gene32690:CDS | 35.0% | |
| ATTGGATCTTCTGAACATAC+AGG | + | 24279:48189-48208 | MS.gene32690:CDS | 35.0% | |
| CACATAAAGCTTATGCTGAT+AGG | + | 24279:49229-49248 | MS.gene32690:CDS | 35.0% | |
| CAGAGCTAATTTCTTCTTCA+CGG | - | 24279:48105-48124 | None:intergenic | 35.0% | |
| CCAAATTGCTCAGAATTGAA+AGG | - | 24279:49080-49099 | None:intergenic | 35.0% | |
| CCTTTCAATTCTGAGCAATT+TGG | + | 24279:49077-49096 | MS.gene32690:CDS | 35.0% | |
| GAAGAAGGAAGAGACATTAA+CGG | + | 24279:48237-48256 | MS.gene32690:CDS | 35.0% | |
| GATAAACTCGATAGAAGACA+TGG | + | 24279:49038-49057 | MS.gene32690:CDS | 35.0% | |
| GCAATTGTTGCAAATTTCCT+TGG | + | 24279:48814-48833 | MS.gene32690:CDS | 35.0% | |
| TACAATTCCTGCTTCAATCA+TGG | - | 24279:49259-49278 | None:intergenic | 35.0% | |
| TTTCCTTGGATTAAGTGCTT+TGG | + | 24279:48828-48847 | MS.gene32690:CDS | 35.0% | |
| ! | AATCCAAAGCACTTAATCCA+AGG | - | 24279:48834-48853 | None:intergenic | 35.0% |
| ! | ACTAATAGCTTTTCTACCCT+CGG | - | 24279:49112-49131 | None:intergenic | 35.0% |
| ! | TCTTCTTTTGTGAAGACAGA+TGG | + | 24279:49441-49460 | MS.gene32690:CDS | 35.0% |
| ! | TTCAGAGTTCTAACTAGGAA+GGG | - | 24279:48892-48911 | None:intergenic | 35.0% |
| ! | TTTCAGAGTTCTAACTAGGA+AGG | - | 24279:48893-48912 | None:intergenic | 35.0% |
| !! | ACCTTGTGTTGTTGATTCAT+CGG | + | 24279:48783-48802 | MS.gene32690:CDS | 35.0% |
| !! | AGGAGGTAAAGAGTGTTTAA+TGG | + | 24279:49464-49483 | MS.gene32690:CDS | 35.0% |
| !! | AGGTAAAGAGTGTTTAATGG+AGG | + | 24279:49467-49486 | MS.gene32690:CDS | 35.0% |
| !! | TAAAGAGTGTTTAATGGAGG+AGG | + | 24279:49470-49489 | MS.gene32690:CDS | 35.0% |
| AAATGCGGAATCGAAGAAGA+AGG | + | 24279:48222-48241 | MS.gene32690:CDS | 40.0% | |
| ACCGATGAATCAACAACACA+AGG | - | 24279:48787-48806 | None:intergenic | 40.0% | |
| AGCTAATTTCTTCTTCACGG+TGG | - | 24279:48102-48121 | None:intergenic | 40.0% | |
| ATAAAGGGAAGCAGGTTTCT+GGG | + | 24279:49361-49380 | MS.gene32690:CDS | 40.0% | |
| ATTAACGGAGATGAAGCATG+TGG | + | 24279:48252-48271 | MS.gene32690:CDS | 40.0% | |
| CAATTGAATCAACGTTGCTC+CGG | - | 24279:47952-47971 | None:intergenic | 40.0% | |
| CATGTGGTTAAGGATTTACG+CGG | + | 24279:48268-48287 | MS.gene32690:CDS | 40.0% | |
| TTCACCTGAATGTCAAGAGA+AGG | + | 24279:49182-49201 | MS.gene32690:CDS | 40.0% | |
| ! | CTAATAGCTTTTCTACCCTC+GGG | - | 24279:49111-49130 | None:intergenic | 40.0% |
| ! | GAAGACGAAGAAGCACAAAT+AGG | - | 24279:49426-49445 | None:intergenic | 40.0% |
| ! | TCTTTTGTGAAGACAGATGG+AGG | + | 24279:49444-49463 | MS.gene32690:CDS | 40.0% |
| !! | AGAAGTGATGGTGGAAACTT+AGG | + | 24279:49384-49403 | MS.gene32690:CDS | 40.0% |
| !! | TGTTGATTCATCGGTTTCTG+AGG | + | 24279:48792-48811 | MS.gene32690:CDS | 40.0% |
| !! | TTAAGGCGTCGAAAATGATG+CGG | - | 24279:48045-48064 | None:intergenic | 40.0% |
| AAAGAAGATTCCGAAGCGAG+AGG | + | 24279:48343-48362 | MS.gene32690:CDS | 45.0% | |
| AGAGAAGACGGAGAAGCTAT+TGG | + | 24279:48171-48190 | MS.gene32690:CDS | 45.0% | |
| AGTGAGTGAAGCAAAACGCT+CGG | - | 24279:49610-49629 | None:intergenic | 45.0% | |
| GAAGCCTTCTCTTGACATTC+AGG | - | 24279:49189-49208 | None:intergenic | 45.0% | |
| GAGAGAAACTTACGCATCGT+TGG | - | 24279:48476-48495 | None:intergenic | 45.0% | |
| GATAAAGGGAAGCAGGTTTC+TGG | + | 24279:49360-49379 | MS.gene32690:CDS | 45.0% | |
| GCACCAGAGGATCCAATTAT+TGG | - | 24279:48865-48884 | None:intergenic | 45.0% | |
| GGAGATGAAGCATGTGGTTA+AGG | + | 24279:48258-48277 | MS.gene32690:CDS | 45.0% | |
| TAGGCTAGATAAAGGGAAGC+AGG | + | 24279:49353-49372 | MS.gene32690:CDS | 45.0% | |
| TAGTGCCTTGGCACAGAAAA+GGG | + | 24279:49308-49327 | MS.gene32690:CDS | 45.0% | |
| TTTGTGAAGACAGATGGAGG+AGG | + | 24279:49447-49466 | MS.gene32690:CDS | 45.0% | |
| ! | AGAAGTGCGAGAAGAGAAGA+CGG | + | 24279:48159-48178 | MS.gene32690:CDS | 45.0% |
| ! | ATTTTCGACGCCTTAAGCTG+CGG | + | 24279:48049-48068 | MS.gene32690:CDS | 45.0% |
| ! | CTTCTTCACGGTGGTAATGT+CGG | - | 24279:48093-48112 | None:intergenic | 45.0% |
| AGGCAAGCCATGATTGAAGC+AGG | + | 24279:49249-49268 | MS.gene32690:CDS | 50.0% | |
| AGTGAAGCAAAACGCTCGGA+AGG | - | 24279:49606-49625 | None:intergenic | 50.0% | |
| ATTGCTTGAGCTGACGCTTG+TGG | + | 24279:49284-49303 | MS.gene32690:CDS | 50.0% | |
| CATGCGAAAAACACTACCGC+CGG | + | 24279:47989-48008 | MS.gene32690:CDS | 50.0% | |
| GAATCAAGCATCCCAACGAG+AGG | - | 24279:48397-48416 | None:intergenic | 50.0% | |
| GGGCAATTTCTCCTCTCGTT+GGG | + | 24279:48383-48402 | MS.gene32690:CDS | 50.0% | |
| GTAGTGCCTTGGCACAGAAA+AGG | + | 24279:49307-49326 | MS.gene32690:CDS | 50.0% | |
| TTCTCCGCGTAACTCCTTCA+CGG | - | 24279:48143-48162 | None:intergenic | 50.0% | |
| TTGCTTGAGCTGACGCTTGT+GGG | + | 24279:49285-49304 | MS.gene32690:CDS | 50.0% | |
| ! | CAGGTTTCTGGGAGAAGTGA+TGG | + | 24279:49372-49391 | MS.gene32690:CDS | 50.0% |
| ! | CGGTAGTGTTTTTCGCATGG+TGG | - | 24279:47988-48007 | None:intergenic | 50.0% |
| ! | GTTTCTGGGAGAAGTGATGG+TGG | + | 24279:49375-49394 | MS.gene32690:CDS | 50.0% |
| ! | TGATGCCCTTTTCTGTGCCA+AGG | - | 24279:49316-49335 | None:intergenic | 50.0% |
| !! | AATTAGCTCTGTCGCGTCGA+CGG | + | 24279:48114-48133 | MS.gene32690:CDS | 50.0% |
| !! | AATTTGGTGTCGAGTCCCGA+GGG | + | 24279:49093-49112 | MS.gene32690:CDS | 50.0% |
| !! | TAGGAAGGGTATTGCACCAG+AGG | - | 24279:48878-48897 | None:intergenic | 50.0% |
| !! | TGGCACAGAAAAGGGCATCA+AGG | + | 24279:49316-49335 | MS.gene32690:CDS | 50.0% |
| AATGATGCGGCGGAAGGATG+AGG | - | 24279:48032-48051 | None:intergenic | 55.0% | |
| GCAACCGTGAAGGAGTTACG+CGG | + | 24279:48136-48155 | MS.gene32690:CDS | 55.0% | |
| GGGGCAATTTCTCCTCTCGT+TGG | + | 24279:48382-48401 | MS.gene32690:CDS | 55.0% | |
| GTCGAAAATGATGCGGCGGA+AGG | - | 24279:48038-48057 | None:intergenic | 55.0% | |
| ! | AGAGGCACACTCGCAATGCT+CGG | + | 24279:48361-48380 | MS.gene32690:CDS | 55.0% |
| ! | CGGCGGTAGTGTTTTTCGCA+TGG | - | 24279:47991-48010 | None:intergenic | 55.0% |
| ! | CTTCACGGTGGTAATGTCGG+TGG | - | 24279:48090-48109 | None:intergenic | 55.0% |
| ! | GTAATGTCGGTGGTGTCGAG+AGG | - | 24279:48080-48099 | None:intergenic | 55.0% |
| !! | AGGCGTCGAAAATGATGCGG+CGG | - | 24279:48042-48061 | None:intergenic | 55.0% |
| !! | CAATTTGGTGTCGAGTCCCG+AGG | + | 24279:49092-49111 | MS.gene32690:CDS | 55.0% |
| AGACTCGACGAAGCGGCGAA+TGG | + | 24279:48294-48313 | MS.gene32690:CDS | 60.0% | |
| AGGCACACTCGCAATGCTCG+GGG | + | 24279:48363-48382 | MS.gene32690:CDS | 60.0% | |
| GACGCTTGTGGGTAGTGCCT+TGG | + | 24279:49296-49315 | MS.gene32690:CDS | 60.0% | |
| GAGGCACACTCGCAATGCTC+GGG | + | 24279:48362-48381 | MS.gene32690:CDS | 60.0% | |
| GCGGAGAAGACTCGACGAAG+CGG | + | 24279:48287-48306 | MS.gene32690:CDS | 60.0% | |
| GGAAGGATGAGGCGGAGAAG+CGG | - | 24279:48021-48040 | None:intergenic | 60.0% | |
| GGAGAAGCGGAAGTTACCGG+CGG | - | 24279:48008-48027 | None:intergenic | 60.0% | |
| GGCGGAGAAGCGGAAGTTAC+CGG | - | 24279:48011-48030 | None:intergenic | 60.0% | |
| TGCGAGTGTGCCTCTCGCTT+CGG | - | 24279:48356-48375 | None:intergenic | 60.0% | |
| TTCGACGCCTTAAGCTGCGG+CGG | + | 24279:48052-48071 | MS.gene32690:CDS | 60.0% | |
| AGAGGCTCCGCCGCAGCTTA+AGG | - | 24279:48062-48081 | None:intergenic | 65.0% | |
| GACGAAGCGGCGAATGGCAG+CGG | + | 24279:48300-48319 | MS.gene32690:CDS | 65.0% | |
| GATGCGGCGGAAGGATGAGG+CGG | - | 24279:48029-48048 | None:intergenic | 65.0% | |
| ! | CGCGTCGACGGCAACCGTGA+AGG | + | 24279:48126-48145 | MS.gene32690:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24279 | gene | 47935 | 49662 | 47935 | ID=MS.gene32690 |
| 24279 | mRNA | 47935 | 49662 | 47935 | ID=MS.gene32690.t1;Parent=MS.gene32690 |
| 24279 | exon | 47935 | 48482 | 47935 | ID=MS.gene32690.t1.exon1;Parent=MS.gene32690.t1 |
| 24279 | CDS | 47935 | 48482 | 47935 | ID=cds.MS.gene32690.t1;Parent=MS.gene32690.t1 |
| 24279 | exon | 48723 | 49662 | 48723 | ID=MS.gene32690.t1.exon2;Parent=MS.gene32690.t1 |
| 24279 | CDS | 48723 | 49662 | 48723 | ID=cds.MS.gene32690.t1;Parent=MS.gene32690.t1 |
| Gene Sequence |
| Protein sequence |
