AlfalfaGEDB | MS.gene32744

M. sativa cultivar XinJiangDaYe / MS.gene32744

KEGG: -
GO: -
PFAM: PF12738.10 PF20415.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32744.t1	RHN70529.1	97.5	529	12	1	1	529	1	528	4.00E-294	1020

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32744.t1	A0A396IXU4	97.5	529	12	1	1	529	1	528	2.9e-294	1020.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050787	MS.gene32744	0.821507	3.89E-53	-1.69E-46
MS.gene051860	MS.gene32744	0.805574	1.25E-49	-1.69E-46
MS.gene054183	MS.gene32744	0.813838	2.09E-51	-1.69E-46
MS.gene054473	MS.gene32744	0.846281	2.40E-59	-1.69E-46
MS.gene055356	MS.gene32744	0.8051	1.57E-49	-1.69E-46
MS.gene055358	MS.gene32744	0.826632	2.44E-54	-1.69E-46
MS.gene055804	MS.gene32744	0.80388	2.82E-49	-1.69E-46
MS.gene057469	MS.gene32744	0.832757	7.88E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32744.t1	MTR_3g105400	97.692	520	12	0	1	520	1	520	0.0	1059
MS.gene32744.t1	MTR_3g105400	97.313	521	13	1	1	520	1	521	0.0	1051

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32744.t1	AT2G26270	54.749	537	222	9	1	529	1	524	0.0	545
MS.gene32744.t1	AT3G43930	47.426	544	229	11	1	529	1	502	7.47e-159	462
MS.gene32744.t1	AT3G43930	46.414	474	206	10	1	462	1	438	5.20e-133	394
MS.gene32744.t1	AT3G43930	45.638	298	134	5	1	287	1	281	1.50e-79	252

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Find 118 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCCATGACGATCTTC+AGG	0.319631	3.1:-83226117	MS.gene32744:CDS
AAAGTCCATGACGATCTTCA+GGG	0.549038	3.1:-83226116	MS.gene32744:CDS
AACCCAGTGTGACAACAAAG+AGG	0.624024	3.1:+83227394	None:intergenic
AAGGGCCGATCTCGGAAAAC+CGG	0.502602	3.1:+83225299	None:intergenic
AAGTAATAACTCATACACAT+TGG	0.664276	3.1:+83224887	None:intergenic
AATCAGAACTCTTCAACCAT+TGG	0.490906	3.1:-83228415	MS.gene32744:CDS
AATGCCTGGATCAACGTAGA+TGG	0.449609	3.1:+83226952	None:intergenic
AATGGTGTCAGAAGTCGCCG+TGG	0.728899	3.1:-83226038	MS.gene32744:CDS
AATTGCGGAGAGGATGAAAC+AGG	0.492134	3.1:+83228381	None:intergenic
ACAGGAGACATTTGGTCCAA+TGG	0.538148	3.1:+83228399	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCAAATCACATGTATAG+TGG	+	chr3.1:83227480-83227499	None:intergenic	30.0%
ACATCCATTCAAAGATATCT+TGG	-	chr3.1:83226666-83226685	MS.gene32744:intron	30.0%
ACTATACATGTGATTTGAGT+TGG	-	chr3.1:83227479-83227498	MS.gene32744:intron	30.0%
AGACCAAAATGTTAAGAATG+AGG	+	chr3.1:83227538-83227557	None:intergenic	30.0%
AGCAAAATCAACAAACTTAG+AGG	+	chr3.1:83227454-83227473	None:intergenic	30.0%
ATATACTTACATGAACCCAT+TGG	-	chr3.1:83225448-83225467	MS.gene32744:intron	30.0%
ATCTCGGTATTGTTAAATAG+TGG	-	chr3.1:83225564-83225583	MS.gene32744:CDS	30.0%
ATGAAACTGGATTTCCATAT+TGG	-	chr3.1:83227558-83227577	MS.gene32744:intron	30.0%
CAATGACTTCAAGTAAGATA+AGG	+	chr3.1:83225105-83225124	None:intergenic	30.0%
CAATTCACAATTGACAAAAC+TGG	-	chr3.1:83225733-83225752	MS.gene32744:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	83224878	83228502	83224878	ID=MS.gene32744
chr3.1	mRNA	83224878	83228502	83224878	ID=MS.gene32744.t1;Parent=MS.gene32744
chr3.1	exon	83228325	83228502	83228325	ID=MS.gene32744.t1.exon1;Parent=MS.gene32744.t1
chr3.1	CDS	83228325	83228502	83228325	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1
chr3.1	exon	83228023	83228108	83228023	ID=MS.gene32744.t1.exon2;Parent=MS.gene32744.t1
chr3.1	CDS	83228023	83228108	83228023	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1
chr3.1	exon	83227367	83227472	83227367	ID=MS.gene32744.t1.exon3;Parent=MS.gene32744.t1
chr3.1	CDS	83227367	83227472	83227367	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1
chr3.1	exon	83226931	83227187	83226931	ID=MS.gene32744.t1.exon4;Parent=MS.gene32744.t1
chr3.1	CDS	83226931	83227187	83226931	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1
chr3.1	exon	83226670	83226801	83226670	ID=MS.gene32744.t1.exon5;Parent=MS.gene32744.t1
chr3.1	CDS	83226670	83226801	83226670	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1
chr3.1	exon	83226318	83226428	83226318	ID=MS.gene32744.t1.exon6;Parent=MS.gene32744.t1
chr3.1	CDS	83226318	83226428	83226318	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1
chr3.1	exon	83226025	83226153	83226025	ID=MS.gene32744.t1.exon7;Parent=MS.gene32744.t1
chr3.1	CDS	83226025	83226153	83226025	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1
chr3.1	exon	83225463	83225680	83225463	ID=MS.gene32744.t1.exon8;Parent=MS.gene32744.t1
chr3.1	CDS	83225463	83225680	83225463	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1
chr3.1	exon	83225225	83225378	83225225	ID=MS.gene32744.t1.exon9;Parent=MS.gene32744.t1
chr3.1	CDS	83225225	83225378	83225225	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1
chr3.1	exon	83224878	83225096	83224878	ID=MS.gene32744.t1.exon10;Parent=MS.gene32744.t1
chr3.1	CDS	83224878	83225096	83224878	ID=cds.MS.gene32744.t1;Parent=MS.gene32744.t1

Gene Sequence

>MS.gene32744

ATGGGTGGTGAGGGTAGAGTTGAAGTTGCGAGTGGCAAAGGGTGTTCGAGGCTGTTTTCGTCTTCAATCAGAACTCTTCAACCATTGGACCAAATGTCTCCTGTTTCATCCTCTCCGCAATTGCCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACCGGTTTATCTAAAGGTGTGGATTCATGTCTTCTATGATTGATTGGATTTCATTTCGTTTTCCTTATCTTACTTGAAGTCATTGGCTAAATTCTACAAATTTGTTTTCATAGCATGTTCATATACTTGAGCTTGAAAAGGTGTATTTTTTTATATTACAGATATTGAACTAATAACTGATATTCATACTGTGATGTTGTTAATGTTATTCTTTGAATTGGCGTTTTGGCAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGATATCCTTTCCTTCTAAATCATCTTGAATTTTCCTATATAATAATAGCATCAGCATGATGCTGTAGTAGGAGGATGTGATTTACATATACTTACATGAACCCATTGGAAAAAAGTTCTGTTAAATCCTGAAAATTGTTTGCTTAACTTTTTTGGTTGTGTGAGAGAAGTAATTTTGGACCCATATCAGTATTTCTACTTTATCTCGGTATTGTTAAATAGTGGCTATAGAGGTACTGTAGCGCTATCACATAGCAGAATTTGAACAGACCACTATTGTTCTGCGATACACTATTTAGTACAAAATATTGTGAAGTAGCGGCGCTATAGCACTGCTGCACAGCGGAATTTGAACAAACCTCTATTTTCTGCAATTCACAATTGACAAAACTGGTTTATCTAAATTTATCTGTCCTATGCTCATCAATATCTTATTATGTTATACTCAGTGCACCTCTTATGAACCATGATCATGGTTGTTGCTTGCCATCTGTTTCCACAGCATGGATATTTTCGTAGTACCATCATGAAATCTTTAACATATAGCACAGTTTTGGCGGACGTAAATTTGAGCATGCAGTAAAGCATGGAACAAAAAATGGCCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAAATGGTAATTAAGTTCATTTAATTTATACTGACACGTTTTAAATTTTTGTTAGCTGTTGTGCTTGAAGTCATGCACTATACAGGAACCTGACACGGCTTTTGTGATATTTATGAATTATAATCATACTTACTGATATTTGTGATTGTTATGATTTGAATGCATTTTCATTTTGTCTACTACAGTAAGGTTGACCGAATCACTTTATAGTTTGAAGAATTATGGGGATAACAATATGAAGTTGGATGATTTTAGACTGCTTCCCGGGTACACAAATGCTGGAAATTGTCTTCCTGCAAGAATCCATGAAATCAAGCATACTCATCATGCTGAAGAATTTCGAAGATTCTCTGGTGCAGAGTCTAACAGAAGTTTGGACTCAAGTTTGTCTGGTTGCTCCATCTACGTTGATCCAGGCATTTCATCCGAATTGCAAAACAAGGTAAATTTATGCGATATAGCAATAAATATCTAGACATTTTGTAATGGTTTCAGTTTCCTCTGTTTCAGTTAGGCTAGCGTATGACTGAAGTGTTCTCGGCTGACACATTTAGATGCTTTACATGTATAGGTTGCTGAAACTGCATCCAAAGAAGGTGCTAGTTTGGCAGACCAATGGTTTGTTGGCTGTAATGTTAGTCATGTAGTCACTGAAGGGACATCCATTCAAAGATATCTTGGATACTCTAGTAACCTCATTACAGTGAGTGCTTCTACATTGTAATTTAATGCTTATCTAAACATTTAGAATAATCTTTTGGAGGCATGCAATTTTTTTGAAGCTCGAACAGTTTTCTCCTCCCACTTGTTTTGCTTTTTTTTTTTAACGGTCCCTGTACATCTTCTGGAAGACATTAATATGTTATTAATATTATGCGATAAGTAGGCCTATACCGTATTATTTATATCACAATGGCGTCTTTTTGATGTATGATATTTCTCAGCCAGTGTGGATTCTCAAAACAGCTAAGGAGAAACAAGTGCAAAGGCTTGTTAGCATGTCTGTTGATTTGGCAAGACAAGTTGGCCTGATGCTTGATGACATTTCAGGGAAGGTAATTTCTCAATACATTCCTAGATTTCCCTCCTTTTCTTGGAATTGTAAATACCAAGATTAAACTCGCTAATTTTCAACAAACCACTCAAATTTGGTTTGCAAAACATCCTAGACTTCCCTCATTTTCTTGAAATTGTGATCTGAATTTCATTGACATAACAGGAAATAGTAAAGCAAAAAGTCCATGACGATCTTCAGGGCAGTAAAAGTGAAATTGGTTGCAAAGAAAGACAACAAATTGTAAATTCAGCGAAAAATGGTGTCAGAAGTCGCCGTGGTCGTCGAATGCAGGTCAGCATTACATTGATTACCTCCACTTTTGTCTTTTCAGTGGAGTTGGATTTCAATATCCATGTAATTGTGTGTCTTAGAGGCTGCACACTTCACCTCTAAGTTTGTTGATTTTGCTCATCCACTATACATGTGATTTGAGTTGGTAATTTGGTATGCATTAGAGAATTTTGAAAGTTCCTCATTCTTAACATTTTGGTCTATGAAACTGGATTTCCATATTGGAATATTTAATTTCGAGCACGGTTATCCACCTGTCTTTAGTTTGTTATCTTTTTTTAAATAAGTACTAAAAGTTGAAGATATGAGTCAATTGTTAACTTAATTTGAACGTTCTTTTGCAGACTTGTCAGACTCCGATCCGTCCGATTACACCCAATAACCTTCTGGACTCTATCTGTTGGTCAATATCGGAAGCAACTTCAACTGCTTTCATTTACACAGACTCTTTCAGTGCTGAAGATCCTAATGAAAATCATACCTCAATATTTTTTGATGCAAAAGGGGATGAGAAGGATTCAGATGCTTCATTTTCACACTCCACACGTCCTCTAACAGAAAGGTTGTTCTCAATTTGTGGCCTGATGGGTATATTTTTTCCCGATGTAGTAAATATGGCTTAATATTTCATTTTGGTTTTTTGCAGTGAGAAATCCGAGTTGATATTTAAAAACCATTTTCTCACCATACTCTTCCCTGTGGACCGGTTTTCCGAGATCGGCCCTTCCTCAAGAACATTTTTCAGCCATAACGGTTTTACATGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGTAAAAGGAAACTTGCAGGCCTTATTAGCATTTGTTATAATACGGCTTATATTGTTTATTACGTGTCTCTCATTCATCTAGAACTGTCGTCACTAATGAGACAATGGATGTGGCGATTTTTGTGATAGGAGAACATGCCTAGCCTTGAAATAGATGTGGCGATTCATACAGATTCAAGACATGCGGACAGGCTTCGATCAGTTTACTCAAGTAAGGAAACAGCGGAGCGTGGGTATGTGATGTTGAAACGAATTGAATTTTTGGGCAGTCGTACGAGTTTTGAAATGTTGAAGCGCGTGAGTGGAGACAACAACTCCAATGTGTATGAGTTATTACTTAGGGCATAA

Protein sequence

>MS.gene32744.t1

MGGEGRVEVASGKGCSRLFSSSIRTLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVHSFGGRKFEHAVKHGTKNGLFVVTLGWFVDSVRKNVRLTESLYSLKNYGDNNMKLDDFRLLPGYTNAGNCLPARIHEIKHTHHAEEFRRFSGAESNRSLDSSLSGCSIYVDPGISSELQNKVAETASKEGASLADQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPVWILKTAKEKQVQRLVSMSVDLARQVGLMLDDISGKEIVKQKVHDDLQGSKSEIGCKERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEATSTAFIYTDSFSAEDPNENHTSIFFDAKGDEKDSDASFSHSTRPLTESEKSELIFKNHFLTILFPVDRFSEIGPSSRTFFSHNGFTCLQVLDHIHAFYQENMPSLEIDVAIHTDSRHADRLRSVYSSKETAERGYVMLKRIEFLGSRTSFEMLKRVSGDNNSNVYELLLRA