Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32794.t1 | XP_013461937.1 | 98.5 | 844 | 9 | 1 | 1 | 840 | 1 | 844 | 0.00E+00 | 1605.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32794.t1 | Q9LDK9 | 79.6 | 842 | 169 | 3 | 1 | 840 | 1 | 841 | 0.0e+00 | 1312.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32794.t1 | A0A072V2B0 | 98.5 | 844 | 9 | 1 | 1 | 840 | 1 | 844 | 0.0e+00 | 1605.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067998 | MS.gene32794 | PPI |
| MS.gene32794 | MS.gene83395 | PPI |
| MS.gene82941 | MS.gene32794 | PPI |
| MS.gene056570 | MS.gene32794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32794.t1 | MTR_3g109922 | 98.460 | 844 | 9 | 1 | 1 | 840 | 1 | 844 | 0.0 | 1713 |
| MS.gene32794.t1 | MTR_4g076210 | 33.520 | 713 | 407 | 16 | 18 | 718 | 12 | 669 | 6.35e-107 | 350 |
| MS.gene32794.t1 | MTR_5g079920 | 26.415 | 212 | 142 | 2 | 42 | 253 | 46 | 243 | 4.95e-17 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32794.t1 | AT5G11490 | 80.166 | 842 | 164 | 3 | 1 | 840 | 1 | 841 | 0.0 | 1397 |
| MS.gene32794.t1 | AT5G11490 | 80.215 | 839 | 163 | 3 | 1 | 837 | 1 | 838 | 0.0 | 1391 |
| MS.gene32794.t1 | AT5G11490 | 79.847 | 784 | 156 | 2 | 56 | 837 | 1 | 784 | 0.0 | 1304 |
| MS.gene32794.t1 | AT4G23460 | 36.093 | 604 | 362 | 12 | 18 | 616 | 12 | 596 | 3.76e-108 | 353 |
| MS.gene32794.t1 | AT4G11380 | 35.285 | 615 | 372 | 11 | 18 | 627 | 12 | 605 | 9.82e-106 | 347 |
| MS.gene32794.t1 | AT4G11380 | 35.932 | 590 | 359 | 10 | 43 | 627 | 52 | 627 | 4.30e-105 | 345 |
| MS.gene32794.t1 | AT4G23460 | 34.893 | 513 | 317 | 11 | 109 | 616 | 2 | 502 | 2.83e-83 | 284 |
| MS.gene32794.t1 | AT3G55480 | 30.556 | 144 | 98 | 1 | 45 | 188 | 49 | 190 | 2.12e-13 | 75.1 |
| MS.gene32794.t1 | AT3G55480 | 23.721 | 430 | 271 | 17 | 275 | 671 | 351 | 756 | 4.42e-13 | 73.9 |
| MS.gene32794.t1 | AT3G55480 | 23.721 | 430 | 271 | 17 | 275 | 671 | 223 | 628 | 2.86e-13 | 74.3 |
Find 197 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCGGCTTCTGCAGTTTC+TGG | 0.097421 | 3.1:-82622870 | MS.gene32794:CDS |
| CAATCAGCTTTGTCCAAATT+TGG | 0.125872 | 3.1:-82618739 | MS.gene32794:CDS |
| GAGTATTTGGTTGGGCCTTT+AGG | 0.153079 | 3.1:-82627069 | MS.gene32794:CDS |
| TGTCTGCTTTACAAGAAATT+TGG | 0.157651 | 3.1:-82625334 | MS.gene32794:CDS |
| GTTTCAGGGCAAACCAAATT+TGG | 0.200113 | 3.1:+82618726 | None:intergenic |
| ATCAAATGCTTCAACGTTTC+TGG | 0.203616 | 3.1:+82626943 | None:intergenic |
| TGGAAAGTCTGGTTGAAAAT+TGG | 0.212595 | 3.1:-82622484 | MS.gene32794:CDS |
| CTGCCTTAGCCTTAGGTTCT+TGG | 0.226571 | 3.1:+82622564 | None:intergenic |
| CCAGGATCCAGTACAGCTTT+TGG | 0.231595 | 3.1:+82619408 | None:intergenic |
| TATAATGCTCCTTCCTATAA+TGG | 0.233272 | 3.1:-82619585 | MS.gene32794:CDS |
| CCTGCACTTGACTTTATCTA+TGG | 0.262839 | 3.1:-82624610 | MS.gene32794:CDS |
| AGTATTTGGTTGGGCCTTTA+GGG | 0.273406 | 3.1:-82627068 | MS.gene32794:CDS |
| TTCACAACCGCTTGCAGATT+TGG | 0.280848 | 3.1:-82619544 | MS.gene32794:CDS |
| TTGGTTGGGCCTTTAGGGTC+AGG | 0.291482 | 3.1:-82627063 | MS.gene32794:CDS |
| CTCTGAGGTGGTTGACTCTA+AGG | 0.294624 | 3.1:+82625310 | None:intergenic |
| ATTATAGGAAGGAGCATTAT+AGG | 0.298629 | 3.1:+82619587 | None:intergenic |
| CGAATTGATTCCCTTGCAAT+TGG | 0.305678 | 3.1:+82622941 | None:intergenic |
| GTTTGCTACGTGCAGCATTA+AGG | 0.317331 | 3.1:-82624784 | MS.gene32794:intron |
| AATACTGAAACTGCTTGTTT+TGG | 0.327010 | 3.1:+82621111 | None:intergenic |
| CATATGATGGCTCGTTATAC+TGG | 0.328980 | 3.1:+82623223 | None:intergenic |
| CAAACCTCTGATAAGGATAT+TGG | 0.329700 | 3.1:+82619357 | None:intergenic |
| GGCGAACTTGGTGGAGTATT+TGG | 0.333179 | 3.1:-82627082 | MS.gene32794:CDS |
| CCCAGTGCTTTCTGAGTCTC+GGG | 0.337763 | 3.1:+82621377 | None:intergenic |
| ATTGATGTTTCGTCTCTCTT+TGG | 0.342308 | 3.1:-82627294 | MS.gene32794:CDS |
| TAGAAGCCTGTAATAAAATA+AGG | 0.343419 | 3.1:+82621173 | None:intergenic |
| AAAGATGATGTGAGAGATAC+TGG | 0.345708 | 3.1:-82619624 | MS.gene32794:CDS |
| CAAGATTGTATTGCTGTTGT+AGG | 0.357677 | 3.1:-82622608 | MS.gene32794:CDS |
| TTACAGCTACGGCAGCTTGC+TGG | 0.364785 | 3.1:-82627390 | MS.gene32794:CDS |
| GGAAAGTCTGGTTGAAAATT+GGG | 0.365049 | 3.1:-82622483 | MS.gene32794:CDS |
| TGAAGGGGCAGACCCATTAT+AGG | 0.369778 | 3.1:+82619572 | None:intergenic |
| GCCTTTAGGGTCAGGGTTGA+AGG | 0.371889 | 3.1:-82627055 | MS.gene32794:CDS |
| TCCCAGTGCTTTCTGAGTCT+CGG | 0.372039 | 3.1:+82621376 | None:intergenic |
| AGAATTGCATAAGATTGTTC+CGG | 0.387819 | 3.1:+82623315 | None:intergenic |
| CAAATTTGGACAAAGCTGAT+TGG | 0.388207 | 3.1:+82618740 | None:intergenic |
| CAATTGCAAGGGAATCAATT+CGG | 0.388565 | 3.1:-82622940 | MS.gene32794:CDS |
| CAAGTCACAGATTAAAATAA+AGG | 0.389674 | 3.1:-82618803 | MS.gene32794:CDS |
| TGATCCGAGGACTGGCATTA+AGG | 0.389716 | 3.1:-82627125 | MS.gene32794:CDS |
| GCTTGCTGGGAGTCGAGCTC+CGG | 0.391372 | 3.1:-82627376 | MS.gene32794:CDS |
| CCTTCGCCGTCGCAACCGTC+CGG | 0.396107 | 3.1:-82627848 | MS.gene32794:CDS |
| TTCAGAAGGTAATAAACAAT+TGG | 0.400938 | 3.1:+82625251 | None:intergenic |
| CTGGGAGCTGCACTGGCCGC+TGG | 0.402711 | 3.1:-82621359 | MS.gene32794:CDS |
| TTCTTACATGTTCACTGATA+AGG | 0.403515 | 3.1:-82619778 | MS.gene32794:CDS |
| AACTTGGTGGAGTATTTGGT+TGG | 0.409463 | 3.1:-82627078 | MS.gene32794:CDS |
| GAAAGTAACACCTATGAGAT+AGG | 0.412792 | 3.1:-82623159 | MS.gene32794:intron |
| TAGTCCGAGGAAAATATATA+TGG | 0.418519 | 3.1:+82623261 | None:intergenic |
| ATGAGAGCTGCCTTAGCCTT+AGG | 0.418866 | 3.1:+82622557 | None:intergenic |
| CTGGCACATTTCAGCAGAAA+TGG | 0.420622 | 3.1:-82619389 | MS.gene32794:CDS |
| TCAAAGGGATTGTAAGGATC+AGG | 0.422298 | 3.1:-82627154 | MS.gene32794:CDS |
| CGATTAGATTGCGGTGGTGC+AGG | 0.423507 | 3.1:+82627875 | None:intergenic |
| GATTGCAGGATGTTCATGAT+AGG | 0.426072 | 3.1:-82621197 | MS.gene32794:intron |
| TTGTTTATTACCTTCTGAAT+CGG | 0.426616 | 3.1:-82625247 | MS.gene32794:intron |
| GAAAGCACTGGGAGCTGCAC+TGG | 0.427199 | 3.1:-82621366 | MS.gene32794:CDS |
| ATAATGCTCCTTCCTATAAT+GGG | 0.428702 | 3.1:-82619584 | MS.gene32794:CDS |
| GTCAGGACGGTGGCAGTAAT+CGG | 0.429251 | 3.1:-82627018 | MS.gene32794:CDS |
| CATGCTGTAGTCTATCTTCA+AGG | 0.433221 | 3.1:+82624670 | None:intergenic |
| CTATGTTACGTCTGAAGCTC+TGG | 0.434441 | 3.1:-82622834 | MS.gene32794:intron |
| GGCAGCTCTCATATGGATGC+TGG | 0.436064 | 3.1:-82622546 | MS.gene32794:CDS |
| GTGATATCAAACATGACTAT+AGG | 0.444966 | 3.1:-82627318 | MS.gene32794:CDS |
| TGGTTGGGCCTTTAGGGTCA+GGG | 0.446084 | 3.1:-82627062 | MS.gene32794:CDS |
| CCTCAACCCAAAAGCTGTAC+TGG | 0.447071 | 3.1:-82619415 | MS.gene32794:CDS |
| AGGCTAAGGCAGCTCTCATA+TGG | 0.449590 | 3.1:-82622553 | MS.gene32794:CDS |
| GCAGTTTCTGGAGATGGAAA+AGG | 0.450968 | 3.1:-82622858 | MS.gene32794:CDS |
| CTGTCTATTAGTGCGGAATC+CGG | 0.457717 | 3.1:-82619714 | MS.gene32794:CDS |
| TCCGTATGTCTTGGAAAGTC+TGG | 0.465126 | 3.1:-82622495 | MS.gene32794:CDS |
| GAGTTACTTGCCTATCTCAT+AGG | 0.465341 | 3.1:+82623149 | None:intergenic |
| TACAGCTACGGCAGCTTGCT+GGG | 0.465832 | 3.1:-82627389 | MS.gene32794:CDS |
| TTCGTCTCTCTTTGGTGAGA+TGG | 0.466707 | 3.1:-82627286 | MS.gene32794:CDS |
| AGAATGCCTGTGATGAGCTT+TGG | 0.467508 | 3.1:+82618773 | None:intergenic |
| CGCAGGAACAACAGAATCTC+CGG | 0.469614 | 3.1:+82619695 | None:intergenic |
| TAGAAGCAGATCCTTGTCAT+TGG | 0.469894 | 3.1:+82619659 | None:intergenic |
| TTCAAAGCAAACCTCTGATA+AGG | 0.470543 | 3.1:+82619350 | None:intergenic |
| AGGGAATCAATTCGGGCTGT+TGG | 0.471812 | 3.1:-82622932 | MS.gene32794:CDS |
| TCAAGTGAGCTCAGGAAGTC+CGG | 0.472287 | 3.1:-82623334 | MS.gene32794:CDS |
| CAATGCTTGGCTAGTCGTGC+TGG | 0.472618 | 3.1:+82619509 | None:intergenic |
| CTTCGCCGTCGCAACCGTCC+GGG | 0.475178 | 3.1:-82627847 | MS.gene32794:intron |
| ACTTGGTGGAGTATTTGGTT+GGG | 0.475411 | 3.1:-82627077 | MS.gene32794:CDS |
| TTCTAAGAAAATATCCTCAA+TGG | 0.478818 | 3.1:-82622634 | MS.gene32794:CDS |
| GAATTGATTCCCTTGCAATT+GGG | 0.478912 | 3.1:+82622942 | None:intergenic |
| TAGCATAGTTTCCAACATAC+AGG | 0.481690 | 3.1:+82627217 | None:intergenic |
| CTCTTAACTCAAGTGAGCTC+AGG | 0.486123 | 3.1:-82623342 | MS.gene32794:CDS |
| GCTTCTGCAGTTTCTGGAGA+TGG | 0.486335 | 3.1:-82622864 | MS.gene32794:CDS |
| AACTTCACTGCTCTGAGTAT+CGG | 0.486490 | 3.1:+82621086 | None:intergenic |
| CATTAAGGAATTTAGTGAAT+GGG | 0.486684 | 3.1:-82624769 | MS.gene32794:CDS |
| AAACTATGCTAAGGTTAATC+CGG | 0.489948 | 3.1:-82627205 | MS.gene32794:CDS |
| TTCACTTCGAGTGGCGAACT+TGG | 0.491152 | 3.1:-82627094 | MS.gene32794:CDS |
| TCAATACAGTGCATTGCATC+CGG | 0.492293 | 3.1:-82618922 | MS.gene32794:CDS |
| CACCTCAGAGGAAGCAGCTA+GGG | 0.493233 | 3.1:-82625297 | MS.gene32794:CDS |
| CTTGCTGGGAGTCGAGCTCC+GGG | 0.495428 | 3.1:-82627375 | MS.gene32794:CDS |
| TTTGTCTGTTGTATACCAAA+AGG | 0.496811 | 3.1:-82621034 | MS.gene32794:intron |
| TCTAAGCCACCTGCATCTCT+TGG | 0.497035 | 3.1:-82623295 | MS.gene32794:CDS |
| AATATTTCACTGTTATCTGA+TGG | 0.500382 | 3.1:+82624708 | None:intergenic |
| GTCAATGATGCAATTGCAAG+AGG | 0.504606 | 3.1:+82618982 | None:intergenic |
| GCATTAAGGAATTTAGTGAA+TGG | 0.506177 | 3.1:-82624770 | MS.gene32794:CDS |
| CCAAAAGCTGTACTGGATCC+TGG | 0.506654 | 3.1:-82619408 | MS.gene32794:CDS |
| GCAGCTCTCATATGGATGCT+GGG | 0.507243 | 3.1:-82622545 | MS.gene32794:CDS |
| AAGATTGTATTGCTGTTGTA+GGG | 0.514619 | 3.1:-82622607 | MS.gene32794:CDS |
| ACTTCGAGTGGCGAACTTGG+TGG | 0.516354 | 3.1:-82627091 | MS.gene32794:CDS |
| AATTGCAAGGGAATCAATTC+GGG | 0.518278 | 3.1:-82622939 | MS.gene32794:CDS |
| TATGGCTGATGTACATCAGC+AGG | 0.521975 | 3.1:-82624592 | MS.gene32794:intron |
| ATCGTCAAAAGAGCAAGATC+CGG | 0.522124 | 3.1:+82627186 | None:intergenic |
| TGCAAATGGTGCTGTTGTCT+TGG | 0.522927 | 3.1:-82624649 | MS.gene32794:CDS |
| GATCATCAATTGCCAATGCT+TGG | 0.526886 | 3.1:+82619496 | None:intergenic |
| AGAACTTGAAATTAGGAGAC+TGG | 0.528548 | 3.1:+82618896 | None:intergenic |
| CCCGAGACTCAGAAAGCACT+GGG | 0.529321 | 3.1:-82621377 | MS.gene32794:CDS |
| TCCTTCAACCCTGACCCTAA+AGG | 0.529512 | 3.1:+82627054 | None:intergenic |
| GATAGACTACAGCATGCAAA+TGG | 0.530107 | 3.1:-82624663 | MS.gene32794:CDS |
| AGGATAATAATAGTTATGTC+AGG | 0.535717 | 3.1:-82627035 | MS.gene32794:CDS |
| CCCCGAGACTCAGAAAGCAC+TGG | 0.536714 | 3.1:-82621378 | MS.gene32794:CDS |
| TGTTGTTCCTGCGCAGAGAG+TGG | 0.538852 | 3.1:-82619685 | MS.gene32794:CDS |
| ATTGCAGGATGTTCATGATA+GGG | 0.541499 | 3.1:-82621196 | MS.gene32794:intron |
| AACTCCTTAATGCCAGTCCT+CGG | 0.542152 | 3.1:+82627121 | None:intergenic |
| CAACAATGTCCAAGAACCTA+AGG | 0.542710 | 3.1:-82622573 | MS.gene32794:CDS |
| CATTTCTGCTGAAATGTGCC+AGG | 0.542817 | 3.1:+82619390 | None:intergenic |
| CTCTTAGAGTCATCAGTACC+CGG | 0.546509 | 3.1:+82627357 | None:intergenic |
| CCACCTCAGAGGAAGCAGCT+AGG | 0.546816 | 3.1:-82625298 | MS.gene32794:CDS |
| GGATCCGATGATCCGAGGAC+TGG | 0.547606 | 3.1:-82627133 | MS.gene32794:CDS |
| AAAATGTGTTACCTGTATGT+TGG | 0.548280 | 3.1:-82627228 | MS.gene32794:CDS |
| AATGCCAGTCCTCGGATCAT+CGG | 0.548429 | 3.1:+82627129 | None:intergenic |
| GCGGTTGTGAAGCTGCTGAA+GGG | 0.548854 | 3.1:+82619556 | None:intergenic |
| CTGATCTAAAATTACAGCTA+CGG | 0.550000 | 3.1:-82627401 | MS.gene32794:CDS |
| TTGGCCTCCACTCTCTGCGC+AGG | 0.550269 | 3.1:+82619678 | None:intergenic |
| CAATCCTTACCTGAGTATCC+TGG | 0.550303 | 3.1:+82626911 | None:intergenic |
| ACCAGACTTTCCAAGACATA+CGG | 0.552347 | 3.1:+82622494 | None:intergenic |
| ACAATGTCTTGTGATGGAAT+TGG | 0.555303 | 3.1:-82624745 | MS.gene32794:CDS |
| CCAGTGCTTTCTGAGTCTCG+GGG | 0.555690 | 3.1:+82621378 | None:intergenic |
| ATGTGCCGTAGGAGTGCATT+GGG | 0.556487 | 3.1:+82618955 | None:intergenic |
| CTGAAAACTCAAATGTCCCT+CGG | 0.557020 | 3.1:+82619751 | None:intergenic |
| CACGCATTACCAAGAGATGC+AGG | 0.558649 | 3.1:+82623286 | None:intergenic |
| CGGGTACTGATGACTCTAAG+AGG | 0.560686 | 3.1:-82627356 | MS.gene32794:CDS |
| GAGTTTGTGTTCACTTCGAG+TGG | 0.560907 | 3.1:-82627103 | MS.gene32794:CDS |
| GCATTTGATGCTCAATGACC+AGG | 0.563623 | 3.1:-82626929 | MS.gene32794:CDS |
| CCATAGATAAAGTCAAGTGC+AGG | 0.564762 | 3.1:+82624610 | None:intergenic |
| GAAAAGATTACCGATTCAGA+AGG | 0.567189 | 3.1:+82625237 | None:intergenic |
| TTGGCAATTGATGATCTGCT+TGG | 0.567360 | 3.1:-82619489 | MS.gene32794:CDS |
| AGCTCACTTGAGTTAAGAGA+GGG | 0.567475 | 3.1:+82623346 | None:intergenic |
| TGTCCAAGAACCTAAGGCTA+AGG | 0.572102 | 3.1:-82622567 | MS.gene32794:CDS |
| GCTCAATGACCAGGATACTC+AGG | 0.572468 | 3.1:-82626920 | MS.gene32794:intron |
| CGGTTGTGAAGCTGCTGAAG+GGG | 0.573044 | 3.1:+82619557 | None:intergenic |
| CATGTGCCGTAGGAGTGCAT+TGG | 0.574006 | 3.1:+82618954 | None:intergenic |
| AGCGGTTGTGAAGCTGCTGA+AGG | 0.575249 | 3.1:+82619555 | None:intergenic |
| GCATGATGCTCCGTATGTCT+TGG | 0.576281 | 3.1:-82622504 | MS.gene32794:CDS |
| TTTGGGTTGAGGGTCAACGG+GGG | 0.576858 | 3.1:+82619426 | None:intergenic |
| CTCCCTAGCTGCTTCCTCTG+AGG | 0.578498 | 3.1:+82625295 | None:intergenic |
| TTATCAGTGAACATGTAAGA+AGG | 0.579603 | 3.1:+82619780 | None:intergenic |
| CAGCTCTCATATGGATGCTG+GGG | 0.579778 | 3.1:-82622544 | MS.gene32794:CDS |
| GTTATCTGATGGAATGTACT+TGG | 0.582108 | 3.1:+82624719 | None:intergenic |
| ATGTTGACATCCCAATTGCA+AGG | 0.584452 | 3.1:-82622952 | MS.gene32794:CDS |
| CCTAGCTGCTTCCTCTGAGG+TGG | 0.585891 | 3.1:+82625298 | None:intergenic |
| ATGTCAATGCTATTGTTGAT+CGG | 0.587080 | 3.1:-82622886 | MS.gene32794:CDS |
| TGATGACCAAAGCTCATCAC+AGG | 0.588639 | 3.1:-82618779 | MS.gene32794:CDS |
| GTATGTTGGAAACTATGCTA+AGG | 0.594327 | 3.1:-82627214 | MS.gene32794:CDS |
| ACGGACCCGGACGGTTGCGA+CGG | 0.594447 | 3.1:+82627842 | None:intergenic |
| TAAGAGGGATCTTTACAAGA+AGG | 0.601150 | 3.1:-82627340 | MS.gene32794:CDS |
| ATGTCTTGTGATGGAATTGG+TGG | 0.601765 | 3.1:-82624742 | MS.gene32794:CDS |
| CAGCACGACTAGCCAAGCAT+TGG | 0.603702 | 3.1:-82619508 | MS.gene32794:CDS |
| CCGGACGGTTGCGACGGCGA+AGG | 0.610990 | 3.1:+82627848 | None:intergenic |
| GAGAGTGGAGGCCAATGACA+AGG | 0.614881 | 3.1:-82619670 | MS.gene32794:CDS |
| GAAATTAGGAGACTGGCCGC+CGG | 0.615981 | 3.1:+82618903 | None:intergenic |
| ATGGGCACAATGTCTTGTGA+TGG | 0.620096 | 3.1:-82624751 | MS.gene32794:CDS |
| ACTACCAATATCCTTATCAG+AGG | 0.623846 | 3.1:-82619361 | MS.gene32794:intron |
| CAGTGCTTTCTGAGTCTCGG+GGG | 0.624458 | 3.1:+82621379 | None:intergenic |
| AATGACTTTGCATGTGCCGT+AGG | 0.625693 | 3.1:+82618944 | None:intergenic |
| TGTTGACATCCCAATTGCAA+GGG | 0.626270 | 3.1:-82622951 | MS.gene32794:CDS |
| CGACTCCCAATGCACTCCTA+CGG | 0.627621 | 3.1:-82618960 | MS.gene32794:CDS |
| GTGAGAGATACTGGAAGCAA+TGG | 0.629878 | 3.1:-82619615 | MS.gene32794:CDS |
| GAGCTCACTTGAGTTAAGAG+AGG | 0.630893 | 3.1:+82623345 | None:intergenic |
| TGTTCCTGCGCAGAGAGTGG+AGG | 0.631340 | 3.1:-82619682 | MS.gene32794:CDS |
| GAAAATGCCAAATCTGCAAG+CGG | 0.631748 | 3.1:+82619537 | None:intergenic |
| GCTTCTACAACACAATGTAT+CGG | 0.632864 | 3.1:-82621157 | MS.gene32794:CDS |
| GGGTACTGATGACTCTAAGA+GGG | 0.633805 | 3.1:-82627355 | MS.gene32794:CDS |
| ATCTGCATCAATACACGTGG+AGG | 0.639042 | 3.1:+82626969 | None:intergenic |
| GGGGCAGACCCATTATAGGA+AGG | 0.639597 | 3.1:+82619576 | None:intergenic |
| ATACAATCTTGACTCCATTG+AGG | 0.643764 | 3.1:+82622620 | None:intergenic |
| ATAGAAGTGTTTGTAGTCCG+AGG | 0.645673 | 3.1:+82623248 | None:intergenic |
| GATCAGGATCCGATGATCCG+AGG | 0.649993 | 3.1:-82627138 | MS.gene32794:CDS |
| TCAATGATGCAATTGCAAGA+GGG | 0.655935 | 3.1:+82618983 | None:intergenic |
| GGAGATCGATTAGATTGCGG+TGG | 0.656896 | 3.1:+82627869 | None:intergenic |
| AGTGAGGGAACGGACCCGGA+CGG | 0.658380 | 3.1:+82627833 | None:intergenic |
| GTGAAAATCAGCAAGACCAG+CGG | 0.660650 | 3.1:+82621343 | None:intergenic |
| TAATAATAGTTATGTCAGGA+CGG | 0.660766 | 3.1:-82627031 | MS.gene32794:CDS |
| TGTATCGGTGGCTGAGAGTG+TGG | 0.662667 | 3.1:-82621142 | MS.gene32794:CDS |
| TGGCAATCTGTCTATTAGTG+CGG | 0.662854 | 3.1:-82619721 | MS.gene32794:CDS |
| TCTACAACACAATGTATCGG+TGG | 0.672727 | 3.1:-82621154 | MS.gene32794:CDS |
| AGTGCTTTCTGAGTCTCGGG+GGG | 0.673467 | 3.1:+82621380 | None:intergenic |
| TCTGGTTGAAAATTGGGACG+AGG | 0.674693 | 3.1:-82622477 | MS.gene32794:CDS |
| ATACAGTGCATTGCATCCGG+CGG | 0.681832 | 3.1:-82618919 | MS.gene32794:CDS |
| AAAATCTGCATCAATACACG+TGG | 0.682353 | 3.1:+82626966 | None:intergenic |
| GGACGAGGAGCATTCTGCCG+AGG | 0.683462 | 3.1:-82622462 | MS.gene32794:intron |
| CTTAGAGTCAACCACCTCAG+AGG | 0.685984 | 3.1:-82625309 | MS.gene32794:CDS |
| GAAGGAGATCGATTAGATTG+CGG | 0.687354 | 3.1:+82627866 | None:intergenic |
| AGCTCTCATATGGATGCTGG+GGG | 0.703952 | 3.1:-82622543 | MS.gene32794:CDS |
| GGATCTGCTTCTAAGTACCA+CGG | 0.710539 | 3.1:-82619649 | MS.gene32794:CDS |
| TAATAGTTATGTCAGGACGG+TGG | 0.728993 | 3.1:-82627028 | MS.gene32794:CDS |
| GCATTACCAAGAGATGCAGG+TGG | 0.740701 | 3.1:+82623289 | None:intergenic |
| TCACTGATAAGGAACACCGA+GGG | 0.741366 | 3.1:-82619767 | MS.gene32794:CDS |
| GCTCACTTGAGTTAAGAGAG+GGG | 0.755910 | 3.1:+82623347 | None:intergenic |
| TTCACTGATAAGGAACACCG+AGG | 0.759479 | 3.1:-82619768 | MS.gene32794:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82618729 | 82627903 | 82618729 | ID=MS.gene32794 |
| chr3.1 | mRNA | 82618729 | 82627903 | 82618729 | ID=MS.gene32794.t1;Parent=MS.gene32794 |
| chr3.1 | exon | 82627848 | 82627903 | 82627848 | ID=MS.gene32794.t1.exon1;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82627848 | 82627903 | 82627848 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82626921 | 82627437 | 82626921 | ID=MS.gene32794.t1.exon2;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82626921 | 82627437 | 82626921 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82625248 | 82625372 | 82625248 | ID=MS.gene32794.t1.exon3;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82625248 | 82625372 | 82625248 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82624593 | 82624791 | 82624593 | ID=MS.gene32794.t1.exon4;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82624593 | 82624791 | 82624593 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82623160 | 82623388 | 82623160 | ID=MS.gene32794.t1.exon5;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82623160 | 82623388 | 82623160 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82622835 | 82623001 | 82622835 | ID=MS.gene32794.t1.exon6;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82622835 | 82623001 | 82622835 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82622463 | 82622672 | 82622463 | ID=MS.gene32794.t1.exon7;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82622463 | 82622672 | 82622463 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82621340 | 82621450 | 82621340 | ID=MS.gene32794.t1.exon8;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82621340 | 82621450 | 82621340 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82621035 | 82621211 | 82621035 | ID=MS.gene32794.t1.exon9;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82621035 | 82621211 | 82621035 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82619362 | 82619802 | 82619362 | ID=MS.gene32794.t1.exon10;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82619362 | 82619802 | 82619362 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| chr3.1 | exon | 82618729 | 82619019 | 82618729 | ID=MS.gene32794.t1.exon11;Parent=MS.gene32794.t1 |
| chr3.1 | CDS | 82618729 | 82619019 | 82618729 | ID=cds.MS.gene32794.t1;Parent=MS.gene32794.t1 |
| Gene Sequence |
| Protein sequence |
