AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33120.t1 MTR_7g110390 26.667 150 104 3 5 153 14 158 3.08e-17 83.6
MS.gene33120.t1 MTR_3g095410 26.786 168 115 5 2 168 55 215 5.77e-14 74.3
MS.gene33120.t1 MTR_3g050240 26.415 159 105 4 5 162 175 322 3.54e-11 65.1
MS.gene33120.t1 MTR_3g050240 29.139 151 98 5 5 153 11 154 5.62e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33120.t1 AT5G09840 26.820 261 156 11 2 240 71 318 2.44e-17 84.7
MS.gene33120.t1 AT3G62210 26.994 163 109 5 1 162 21 174 1.40e-15 77.0
MS.gene33120.t1 AT3G62200 26.875 160 107 4 4 162 30 180 5.63e-14 73.9
MS.gene33120.t1 AT3G62050 29.752 121 70 5 4 121 14 122 3.38e-11 61.6

Find 105 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCGAATAACAACATTTA+TGG 0.129146 1.1:-7536179 None:intergenic
TGTTGAAACCTTGAAGTTTA+TGG 0.131106 1.1:+7534936 MS.gene33120:CDS
TGTAAAGCGTTTAAACTTAC+AGG 0.197901 1.1:+7536007 MS.gene33120:CDS
TGGTGTCCACCGGCGTATTC+TGG 0.214087 1.1:+7534221 MS.gene33120:CDS
ATGGGACCCAATCTCTCCTT+TGG 0.269593 1.1:-7536160 None:intergenic
AACCGGGTTTCGATAGTATA+TGG 0.277742 1.1:-7535079 None:intergenic
TTCTTTAATGTCTGTAACTT+TGG 0.293926 1.1:+7536795 MS.gene33120:CDS
TTTGGAAACGTTAAGAAGAT+AGG 0.317087 1.1:+7534364 MS.gene33120:CDS
ATTCGAATAACAACATTTAT+GGG 0.319102 1.1:-7536178 None:intergenic
GAGAACTGCCGGACTCTAAA+AGG 0.325854 1.1:-7535056 None:intergenic
AGCAATACTTATATTATTCC+TGG 0.335011 1.1:-7536284 None:intergenic
TTCTGAGGCATCCCACTTCC+CGG 0.343788 1.1:-7534986 None:intergenic
GGACTCACTGTGAGAGCATT+TGG 0.344271 1.1:+7534346 MS.gene33120:CDS
TCAATATTGGTCCCAACCTT+AGG 0.345166 1.1:-7536427 None:intergenic
CTTGTACTCGTACTGGTAAA+AGG 0.346241 1.1:-7535966 None:intergenic
ACCTTCTTCCATAAACTTCA+AGG 0.372927 1.1:-7534944 None:intergenic
TGGGACCCAATCTCTCCTTT+GGG 0.373712 1.1:-7536159 None:intergenic
TTATTAGCAACATGCATTCC+TGG 0.376131 1.1:+7534860 MS.gene33120:CDS
CGGAATATTAGAAAATATAA+AGG 0.388369 1.1:+7536942 MS.gene33120:CDS
CTCGTGCTGAACTCAATTCC+AGG 0.394340 1.1:+7536266 MS.gene33120:CDS
CACTTCTATATAATCAATAT+TGG 0.395917 1.1:-7536440 None:intergenic
GACTTGATTGATGCACCTTC+CGG 0.397470 1.1:+7534424 MS.gene33120:CDS
GGTGTCCACCGGCGTATTCT+GGG 0.404162 1.1:+7534222 MS.gene33120:CDS
TCTCTTCGACTAGGCGGTAT+AGG 0.405051 1.1:+7534313 MS.gene33120:CDS
CAATATTGGTCCCAACCTTA+GGG 0.414014 1.1:-7536426 None:intergenic
GTCAAACCCAAAGGAGAGAT+TGG 0.419092 1.1:+7536153 MS.gene33120:CDS
AATCACTATCACCCGCGATT+AGG 0.434677 1.1:-7534912 None:intergenic
TTTACAGAGGAAGACATTGT+AGG 0.440045 1.1:+7537054 MS.gene33120:intron
GACTCTAAAAGGACTATGTT+AGG 0.442516 1.1:-7535045 None:intergenic
ACGGACAAGTATTGTGGAAC+TGG 0.443416 1.1:+7535022 MS.gene33120:CDS
TTTGTTCAAACCCTAAGGTT+GGG 0.454926 1.1:+7536416 MS.gene33120:CDS
TCTAAACCACCATTGAGTTT+AGG 0.456749 1.1:-7536870 None:intergenic
CTAGGCGGTATAGGAGTAGA+AGG 0.461409 1.1:+7534322 MS.gene33120:CDS
TAACCGTCGTGCTGAGGAAT+GGG 0.462670 1.1:+7536902 MS.gene33120:CDS
CAATGGTGGTTTAGAGTGGA+TGG 0.462773 1.1:+7536878 MS.gene33120:CDS
TTGGAAACGTTAAGAAGATA+GGG 0.462817 1.1:+7534365 MS.gene33120:CDS
TGGAATTTGTTCAAACCCTA+AGG 0.466799 1.1:+7536411 MS.gene33120:CDS
ACCTTGAAGTTTATGGAAGA+AGG 0.468779 1.1:+7534943 MS.gene33120:CDS
TTGAGTTTGCTGAAATTCTC+CGG 0.469079 1.1:+7536766 MS.gene33120:CDS
AAGTCATGATCGCCGGGAAG+TGG 0.469652 1.1:+7534974 MS.gene33120:CDS
ATTGATGCACCTTCCGGCGG+AGG 0.472148 1.1:+7534430 MS.gene33120:CDS
GATTAGGAGGATATTTCCCT+TGG 0.476900 1.1:-7534896 None:intergenic
CGCAAACCTTGTACTCGTAC+TGG 0.478424 1.1:-7535973 None:intergenic
AAACTAATATTGCCGTGGCT+TGG 0.492637 1.1:-7536364 None:intergenic
CGAAGGCAATTCAAAGCTGC+AGG 0.493964 1.1:+7534397 MS.gene33120:CDS
TTGCTCAACAATATTGGTGG+AGG 0.495372 1.1:+7536484 MS.gene33120:CDS
ATGTCTGTAACTTTGGTGAA+AGG 0.498599 1.1:+7536802 MS.gene33120:CDS
ATTTGTTCAAACCCTAAGGT+TGG 0.500980 1.1:+7536415 MS.gene33120:CDS
TCAGAACTGCTGATGGAATA+CGG 0.510494 1.1:+7535003 MS.gene33120:CDS
CACTATCACCCGCGATTAGG+AGG 0.515264 1.1:-7534909 None:intergenic
GCTTCTTAGCTGTGTAGGAA+TGG 0.518991 1.1:-7534260 None:intergenic
AGTGTAGGAAATACATGCTC+CGG 0.521068 1.1:-7536217 None:intergenic
GGCATAAAGTCATGATCGCC+GGG 0.521161 1.1:+7534968 MS.gene33120:CDS
TCAAACCCAAAGGAGAGATT+GGG 0.524842 1.1:+7536154 MS.gene33120:CDS
ACCGGGTTTCGATAGTATAT+GGG 0.527100 1.1:-7535078 None:intergenic
ATAGTATATGGGAGAACTGC+CGG 0.528774 1.1:-7535067 None:intergenic
GGATGCCTCAGAACTGCTGA+TGG 0.536396 1.1:+7534996 MS.gene33120:CDS
GTAACCGTCGTGCTGAGGAA+TGG 0.536553 1.1:+7536901 MS.gene33120:CDS
ATTAGGAGGATATTTCCCTT+GGG 0.539334 1.1:-7534895 None:intergenic
TATTGCTGATGCTTTGCAAT+GGG 0.540134 1.1:+7536300 MS.gene33120:CDS
TCATAGCTTCTTAGCTGTGT+AGG 0.543817 1.1:-7534265 None:intergenic
GGGCATAAAGTCATGATCGC+CGG 0.545017 1.1:+7534967 MS.gene33120:CDS
AGATTAGCTGACAGCCACCT+TGG 0.547787 1.1:+7536391 MS.gene33120:CDS
AGACATTAAAGAACTTCCTC+CGG 0.549304 1.1:-7536785 None:intergenic
GGAGGAAATCGATTAGAGCC+AGG 0.557630 1.1:+7536502 MS.gene33120:CDS
GGAAATATCCTCCTAATCGC+GGG 0.561694 1.1:+7534901 MS.gene33120:CDS
AACTCAATGGTGGTTTAGAG+TGG 0.565618 1.1:+7536874 MS.gene33120:CDS
GTTTAGGCTTCAGCATGACA+TGG 0.572400 1.1:-7536854 None:intergenic
AGTCATGATCGCCGGGAAGT+GGG 0.573165 1.1:+7534975 MS.gene33120:CDS
TTGAAGTTTATGGAAGAAGG+TGG 0.579140 1.1:+7534946 MS.gene33120:CDS
TGGAATACGGACAAGTATTG+TGG 0.593268 1.1:+7535016 MS.gene33120:CDS
TTTGGTGAAAGGTTTCTGAT+CGG 0.594767 1.1:+7536813 MS.gene33120:CDS
ACTCAATGGTAACTTTCTTG+TGG 0.596798 1.1:-7536330 None:intergenic
ATGCTGAAGCCTAAACTCAA+TGG 0.597722 1.1:+7536861 MS.gene33120:CDS
TTGATTGATGCACCTTCCGG+CGG 0.599582 1.1:+7534427 MS.gene33120:CDS
TAGGGTTTGAACAAATTCCA+AGG 0.603209 1.1:-7536408 None:intergenic
CAATACTAACCTCCGCCGGA+AGG 0.607198 1.1:-7534439 None:intergenic
GGGAAATATCCTCCTAATCG+CGG 0.607421 1.1:+7534900 MS.gene33120:CDS
GATGGGTAACCGTCGTGCTG+AGG 0.615512 1.1:+7536896 MS.gene33120:CDS
TGGAACTCGAGTACACTCAA+TGG 0.616193 1.1:-7536344 None:intergenic
TGAAGTTTATGGAAGAAGGT+GGG 0.621230 1.1:+7534947 MS.gene33120:CDS
TGGAAACGTTAAGAAGATAG+GGG 0.627742 1.1:+7534366 MS.gene33120:CDS
CTGAAGCCTAAACTCAATGG+TGG 0.628478 1.1:+7536864 MS.gene33120:CDS
TGTACAAACTAATATTGCCG+TGG 0.637325 1.1:-7536369 None:intergenic
CTGGTCGCGTGAAAATCCCA+AGG 0.638364 1.1:+7534879 MS.gene33120:CDS
GGGCTCCAAATTTCAAAATG+CGG 0.638600 1.1:+7536922 MS.gene33120:CDS
ACAATCATAATGGTGTCCAC+CGG 0.640527 1.1:+7534211 None:intergenic
GTATTCCATCAGCAGTTCTG+AGG 0.642202 1.1:-7535001 None:intergenic
GTATTGCTGATGCTTTGCAA+TGG 0.642280 1.1:+7536299 MS.gene33120:CDS
ATCAGTGCTTCTCTTCGACT+AGG 0.644770 1.1:+7534304 MS.gene33120:CDS
AATGGTGGTTTAGAGTGGAT+GGG 0.650032 1.1:+7536879 MS.gene33120:CDS
AGATAGGGGATGATGTTCGA+AGG 0.651387 1.1:+7534380 MS.gene33120:CDS
CAAACAATACTAACCTCCGC+CGG 0.657717 1.1:-7534443 None:intergenic
ACAGGATGAGTCAAACCCAA+AGG 0.659275 1.1:+7536144 MS.gene33120:intron
TGTACTCGAGTTCCAAGCCA+CGG 0.661299 1.1:+7536352 MS.gene33120:CDS
TCCCATATACTATCGAAACC+CGG 0.668326 1.1:+7535077 MS.gene33120:CDS
ATATTGATTATATAGAAGTG+TGG 0.680795 1.1:+7536443 MS.gene33120:CDS
GAGCCCATTCCTCAGCACGA+CGG 0.681884 1.1:-7536905 None:intergenic
AGTGCTTCTCTTCGACTAGG+CGG 0.682637 1.1:+7534307 MS.gene33120:CDS
GGCGGTATAGGAGTAGAAGG+TGG 0.691425 1.1:+7534325 MS.gene33120:CDS
TGGTCGCGTGAAAATCCCAA+GGG 0.691802 1.1:+7534880 MS.gene33120:CDS
GACATCCCAGAATACGCCGG+TGG 0.704952 1.1:-7534227 None:intergenic
CTCGACATCCCAGAATACGC+CGG 0.705331 1.1:-7534230 None:intergenic
GGTTTGAACAAATTCCAAGG+TGG 0.708113 1.1:-7536405 None:intergenic
AGTTTGCTGAAATTCTCCGG+AGG 0.726467 1.1:+7536769 MS.gene33120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGAAAACATTTTAAAAAT+GGG - chr1.1:7534546-7534565 None:intergenic 10.0%
!! TAAAATTGTAATCAAATGTT+AGG + chr1.1:7535622-7535641 MS.gene33120:intron 15.0%
!!! AAAAGTGTTCTTATTTATAT+TGG - chr1.1:7535888-7535907 None:intergenic 15.0%
!!! AAAGTGTTCTTATTTATATT+GGG - chr1.1:7535887-7535906 None:intergenic 15.0%
!!! CAAAGAAAACATTTTAAAAA+TGG - chr1.1:7534547-7534566 None:intergenic 15.0%
!! AAATGCTTATCAGAATATAA+AGG - chr1.1:7536039-7536058 None:intergenic 20.0%
!! AATGCTTATCAGAATATAAA+GGG - chr1.1:7536038-7536057 None:intergenic 20.0%
!! AATGTTATACTTCTATTGTT+AGG - chr1.1:7535427-7535446 None:intergenic 20.0%
!! AATTATAATTAGACTTTGGA+GGG + chr1.1:7535278-7535297 MS.gene33120:intron 20.0%
!! AATTCGAATAACAACATTTA+TGG - chr1.1:7536182-7536201 None:intergenic 20.0%
!! ACAGAATTATAATTAGACTT+TGG + chr1.1:7535274-7535293 MS.gene33120:intron 20.0%
!! ATCATACAAAAAAACTATTC+TGG - chr1.1:7534502-7534521 None:intergenic 20.0%
!! ATGAAAATAAAAAACGTACA+TGG - chr1.1:7536533-7536552 None:intergenic 20.0%
!! ATTCGAATAACAACATTTAT+GGG - chr1.1:7536181-7536200 None:intergenic 20.0%
!! CACTTCTATATAATCAATAT+TGG - chr1.1:7536443-7536462 None:intergenic 20.0%
!! CGGAATATTAGAAAATATAA+AGG + chr1.1:7536942-7536961 MS.gene33120:CDS 20.0%
!! GAATAATTTGATATGATGAT+TGG + chr1.1:7536702-7536721 MS.gene33120:intron 20.0%
!! TCATAAATTAAAGTTACTCA+AGG - chr1.1:7535592-7535611 None:intergenic 20.0%
!! TCATACAAAAAAACTATTCT+GGG - chr1.1:7534501-7534520 None:intergenic 20.0%
!! TGAAATTGAAATTATTGATG+AGG + chr1.1:7534676-7534695 MS.gene33120:intron 20.0%
!! TTACATTATCAAATGTTATC+AGG + chr1.1:7535907-7535926 MS.gene33120:intron 20.0%
!! TTCAATTAAATATTGCAGTT+AGG + chr1.1:7535311-7535330 MS.gene33120:intron 20.0%
!!! AAGTGTTCTTATTTATATTG+GGG - chr1.1:7535886-7535905 None:intergenic 20.0%
!!! AGTTTGGTAATTTTTTAGTT+GGG + chr1.1:7535186-7535205 MS.gene33120:intron 20.0%
!!! ATATTGATTATATAGAAGTG+TGG + chr1.1:7536443-7536462 MS.gene33120:CDS 20.0%
!!! ATGTTTTCATTTCCAAAAAT+AGG - chr1.1:7535151-7535170 None:intergenic 20.0%
!!! TAATCAAATGTTAGGTTTTA+GGG + chr1.1:7535630-7535649 MS.gene33120:intron 20.0%
!!! TGATTTAACATTCCTATTTT+TGG + chr1.1:7535136-7535155 MS.gene33120:intron 20.0%
!!! TTGAGTAACTTTAATTTATG+AGG + chr1.1:7535591-7535610 MS.gene33120:intron 20.0%
!!! TTGTTGAATAATTTTACATG+AGG - chr1.1:7535510-7535529 None:intergenic 20.0%
! AGCAATACTTATATTATTCC+TGG - chr1.1:7536287-7536306 None:intergenic 25.0%
! GAATTATAATTAGACTTTGG+AGG + chr1.1:7535277-7535296 MS.gene33120:intron 25.0%
! TCGATAATAAATCATTGAAC+TGG - chr1.1:7536582-7536601 None:intergenic 25.0%
! TGCAATATTTAATTGAAGAG+CGG - chr1.1:7535308-7535327 None:intergenic 25.0%
! TTCTTTAATGTCTGTAACTT+TGG + chr1.1:7536795-7536814 MS.gene33120:CDS 25.0%
! TTGAATGAAATGAAACTAAC+CGG - chr1.1:7535099-7535118 None:intergenic 25.0%
! TTGGAAGTAAAAACATATAG+AGG - chr1.1:7535563-7535582 None:intergenic 25.0%
! TTTGTAGGTGTAAAAAGAAA+TGG + chr1.1:7534823-7534842 MS.gene33120:intron 25.0%
! TTTGTATGATCGTGTATAAT+TGG + chr1.1:7534512-7534531 MS.gene33120:intron 25.0%
!! AATTTTGCAAATTTTACAGC+CGG + chr1.1:7536198-7536217 MS.gene33120:CDS 25.0%
!! ACAGCGTTCATAAATATTTT+TGG + chr1.1:7536966-7536985 MS.gene33120:intron 25.0%
!! AGATTGAACATTTTCTGTTT+AGG + chr1.1:7536742-7536761 MS.gene33120:intron 25.0%
!! CAATGTCTAAAATTGCATAT+GGG - chr1.1:7536104-7536123 None:intergenic 25.0%
!! GTAATCAAATGTTAGGTTTT+AGG + chr1.1:7535629-7535648 MS.gene33120:intron 25.0%
!! GTTTAACTCTTCATTTCTTT+TGG + chr1.1:7534465-7534484 MS.gene33120:intron 25.0%
!! TCAATGTCTAAAATTGCATA+TGG - chr1.1:7536105-7536124 None:intergenic 25.0%
!!! AATCAAATGTTAGGTTTTAG+GGG + chr1.1:7535631-7535650 MS.gene33120:intron 25.0%
!!! ACTTTTTTGCTCAACAATAT+TGG + chr1.1:7536478-7536497 MS.gene33120:CDS 25.0%
!!! ATATTCCGCATTTTGAAATT+TGG - chr1.1:7536930-7536949 None:intergenic 25.0%
!!! GAGTTTGGTAATTTTTTAGT+TGG + chr1.1:7535185-7535204 MS.gene33120:intron 25.0%
AGCAAAAAAGTTTGCAATAG+TGG - chr1.1:7536469-7536488 None:intergenic 30.0%
AGTTTCAGAATGACATCATA+TGG + chr1.1:7534720-7534739 MS.gene33120:intron 30.0%
ATTAAGATTAACAGCCAAAG+AGG + chr1.1:7534649-7534668 MS.gene33120:intron 30.0%
CAAATCTAACCATTTCAACA+AGG + chr1.1:7535480-7535499 MS.gene33120:intron 30.0%
GTTTCAGAATGACATCATAT+GGG + chr1.1:7534721-7534740 MS.gene33120:intron 30.0%
TCAAATCGATATAACATGAC+CGG - chr1.1:7535690-7535709 None:intergenic 30.0%
TGAATGAAATGAAACTAACC+GGG - chr1.1:7535098-7535117 None:intergenic 30.0%
TGTTGAAACCTTGAAGTTTA+TGG + chr1.1:7534936-7534955 MS.gene33120:CDS 30.0%
TTCAATTTCACATTCCTCTT+TGG - chr1.1:7534666-7534685 None:intergenic 30.0%
TTGGAAACGTTAAGAAGATA+GGG + chr1.1:7534365-7534384 MS.gene33120:CDS 30.0%
TTTGGAAACGTTAAGAAGAT+AGG + chr1.1:7534364-7534383 MS.gene33120:CDS 30.0%
! CCAAAAAACGACAATTTTAG+AGG - chr1.1:7537027-7537046 None:intergenic 30.0%
! TGCTAACGTTTTTCATTTAC+AGG + chr1.1:7536126-7536145 MS.gene33120:intron 30.0%
! TGTAAAGCGTTTAAACTTAC+AGG + chr1.1:7536007-7536026 MS.gene33120:CDS 30.0%
! TTTAGGGGTTTTACTATAGT+TGG + chr1.1:7535646-7535665 MS.gene33120:intron 30.0%
! TTTTTGCTCAACAATATTGG+TGG + chr1.1:7536481-7536500 MS.gene33120:CDS 30.0%
!! ACATTTTAAAAATGGGTTCC+AGG - chr1.1:7534539-7534558 None:intergenic 30.0%
!! GATGACTATCATGTTTTTGT+AGG + chr1.1:7534808-7534827 MS.gene33120:intron 30.0%
!!! CCTCTAAAATTGTCGTTTTT+TGG + chr1.1:7537024-7537043 MS.gene33120:intron 30.0%
!!! TCTTTGATGTTTTCAAGTGT+AGG - chr1.1:7536235-7536254 None:intergenic 30.0%
!!! TTTTGGTTGTTTCTTTACAG+AGG + chr1.1:7537041-7537060 MS.gene33120:intron 30.0%
AAACTTACTGTAGGATGGTA+TGG + chr1.1:7535336-7535355 MS.gene33120:intron 35.0%
AAGTTACTCAAGGACTATGT+TGG - chr1.1:7535582-7535601 None:intergenic 35.0%
ACCTTCTTCCATAAACTTCA+AGG - chr1.1:7534947-7534966 None:intergenic 35.0%
ACCTTGAAGTTTATGGAAGA+AGG + chr1.1:7534943-7534962 MS.gene33120:CDS 35.0%
ACTCAATGGTAACTTTCTTG+TGG - chr1.1:7536333-7536352 None:intergenic 35.0%
AGACATTAAAGAACTTCCTC+CGG - chr1.1:7536788-7536807 None:intergenic 35.0%
AGTTAGGAGAAACTTACTGT+AGG + chr1.1:7535327-7535346 MS.gene33120:intron 35.0%
ATAGTCATCAGTAGTCAGTA+AGG - chr1.1:7534797-7534816 None:intergenic 35.0%
ATGTCTGTAACTTTGGTGAA+AGG + chr1.1:7536802-7536821 MS.gene33120:CDS 35.0%
ATTAGGAGGATATTTCCCTT+GGG - chr1.1:7534898-7534917 None:intergenic 35.0%
ATTTGTTCAAACCCTAAGGT+TGG + chr1.1:7536415-7536434 MS.gene33120:CDS 35.0%
CAAACTTAGTACTGTCATCA+AGG - chr1.1:7535859-7535878 None:intergenic 35.0%
CGATCATCAATTACTCAATC+AGG - chr1.1:7536683-7536702 None:intergenic 35.0%
CTATTAGAGTTATCACAGCA+GGG + chr1.1:7535230-7535249 MS.gene33120:intron 35.0%
GGAAATGAAAACATTGAGAG+AGG + chr1.1:7535157-7535176 MS.gene33120:intron 35.0%
GGACTAACTAATTCTGTTAG+TGG + chr1.1:7535251-7535270 MS.gene33120:intron 35.0%
GTAGCTCAAGAATCAAGATT+TGG - chr1.1:7535766-7535785 None:intergenic 35.0%
TAGGGTTTGAACAAATTCCA+AGG - chr1.1:7536411-7536430 None:intergenic 35.0%
TATTGCTGATGCTTTGCAAT+GGG + chr1.1:7536300-7536319 MS.gene33120:CDS 35.0%
TCTAAACCACCATTGAGTTT+AGG - chr1.1:7536873-7536892 None:intergenic 35.0%
TCTATTAGAGTTATCACAGC+AGG + chr1.1:7535229-7535248 MS.gene33120:intron 35.0%
TGAAGTTTATGGAAGAAGGT+GGG + chr1.1:7534947-7534966 MS.gene33120:CDS 35.0%
TGGAAACGTTAAGAAGATAG+GGG + chr1.1:7534366-7534385 MS.gene33120:CDS 35.0%
TGTACAAACTAATATTGCCG+TGG - chr1.1:7536372-7536391 None:intergenic 35.0%
TTATTAGCAACATGCATTCC+TGG + chr1.1:7534860-7534879 MS.gene33120:CDS 35.0%
TTGAAGTTTATGGAAGAAGG+TGG + chr1.1:7534946-7534965 MS.gene33120:CDS 35.0%
TTGTTACAGACTTACAGTCA+TGG - chr1.1:7535463-7535482 None:intergenic 35.0%
TTTACAGAGGAAGACATTGT+AGG + chr1.1:7537054-7537073 MS.gene33120:intron 35.0%
TTTGGTGAAAGGTTTCTGAT+CGG + chr1.1:7536813-7536832 MS.gene33120:CDS 35.0%
TTTGTTCAAACCCTAAGGTT+GGG + chr1.1:7536416-7536435 MS.gene33120:CDS 35.0%
! AAAACGTACATGGATTTTCC+TGG - chr1.1:7536523-7536542 None:intergenic 35.0%
! ATTGAAGGCATACACTGTAA+GGG - chr1.1:7536080-7536099 None:intergenic 35.0%
! CTCAAGAATCAAGATTTGGT+AGG - chr1.1:7535762-7535781 None:intergenic 35.0%
! GACTCTAAAAGGACTATGTT+AGG - chr1.1:7535048-7535067 None:intergenic 35.0%
! TGGAATTTGTTCAAACCCTA+AGG + chr1.1:7536411-7536430 MS.gene33120:CDS 35.0%
!! AAATTGCATATGGGCATTGA+AGG - chr1.1:7536095-7536114 None:intergenic 35.0%
!! ATAAGCATTTGTTGTGCCAA+GGG + chr1.1:7536049-7536068 MS.gene33120:intron 35.0%
!! TTGAGTTTGCTGAAATTCTC+CGG + chr1.1:7536766-7536785 MS.gene33120:CDS 35.0%
!!! AACATAGTCCTTTTAGAGTC+CGG + chr1.1:7535048-7535067 MS.gene33120:CDS 35.0%
!!! ACCGTCTCTATGATTTTTTG+CGG + chr1.1:7535722-7535741 MS.gene33120:intron 35.0%
AAACTAATATTGCCGTGGCT+TGG - chr1.1:7536367-7536386 None:intergenic 40.0%
AACCGGGTTTCGATAGTATA+TGG - chr1.1:7535082-7535101 None:intergenic 40.0%
AACTCAATGGTGGTTTAGAG+TGG + chr1.1:7536874-7536893 MS.gene33120:CDS 40.0%
ACCGGGTTTCGATAGTATAT+GGG - chr1.1:7535081-7535100 None:intergenic 40.0%
AGGAGAAACTTACTGTAGGA+TGG + chr1.1:7535331-7535350 MS.gene33120:intron 40.0%
AGTGTAGGAAATACATGCTC+CGG - chr1.1:7536220-7536239 None:intergenic 40.0%
ATAGTATATGGGAGAACTGC+CGG - chr1.1:7535070-7535089 None:intergenic 40.0%
ATGCTGAAGCCTAAACTCAA+TGG + chr1.1:7536861-7536880 MS.gene33120:CDS 40.0%
CAATATTGGTCCCAACCTTA+GGG - chr1.1:7536429-7536448 None:intergenic 40.0%
GATTAGGAGGATATTTCCCT+TGG - chr1.1:7534899-7534918 None:intergenic 40.0%
GCCGCAAAAAATCATAGAGA+CGG - chr1.1:7535726-7535745 None:intergenic 40.0%
GGGCTCCAAATTTCAAAATG+CGG + chr1.1:7536922-7536941 MS.gene33120:CDS 40.0%
GGTTTGAACAAATTCCAAGG+TGG - chr1.1:7536408-7536427 None:intergenic 40.0%
GTATTGCTGATGCTTTGCAA+TGG + chr1.1:7536299-7536318 MS.gene33120:CDS 40.0%
GTTTCCTTCTTCAAGAGAGA+AGG - chr1.1:7535388-7535407 None:intergenic 40.0%
TACTGTAGGATGGTATGGTA+TGG + chr1.1:7535341-7535360 MS.gene33120:intron 40.0%
TCAAACCCAAAGGAGAGATT+GGG + chr1.1:7536154-7536173 MS.gene33120:CDS 40.0%
TCAATATTGGTCCCAACCTT+AGG - chr1.1:7536430-7536449 None:intergenic 40.0%
TCAGAACTGCTGATGGAATA+CGG + chr1.1:7535003-7535022 MS.gene33120:CDS 40.0%
TCATAGCTTCTTAGCTGTGT+AGG - chr1.1:7534268-7534287 None:intergenic 40.0%
TCCCATATACTATCGAAACC+CGG + chr1.1:7535077-7535096 MS.gene33120:CDS 40.0%
TGATCGTGTATAATTGGTCC+TGG + chr1.1:7534518-7534537 MS.gene33120:intron 40.0%
TTGAGAGAGGTAGTAGAGTT+TGG + chr1.1:7535170-7535189 MS.gene33120:intron 40.0%
TTGCTCAACAATATTGGTGG+AGG + chr1.1:7536484-7536503 MS.gene33120:CDS 40.0%
! AATGGTGGTTTAGAGTGGAT+GGG + chr1.1:7536879-7536898 MS.gene33120:CDS 40.0%
! CATTGAAGGCATACACTGTA+AGG - chr1.1:7536081-7536100 None:intergenic 40.0%
! CTTGTACTCGTACTGGTAAA+AGG - chr1.1:7535969-7535988 None:intergenic 40.0%
! CTTTTACCAGTACGAGTACA+AGG + chr1.1:7535967-7535986 MS.gene33120:CDS 40.0%
! GAATCAAGATTTGGTAGGAG+AGG - chr1.1:7535757-7535776 None:intergenic 40.0%
! TGGAATACGGACAAGTATTG+TGG + chr1.1:7535016-7535035 MS.gene33120:CDS 40.0%
!! GATAAGCATTTGTTGTGCCA+AGG + chr1.1:7536048-7536067 MS.gene33120:intron 40.0%
AATCACTATCACCCGCGATT+AGG - chr1.1:7534915-7534934 None:intergenic 45.0%
ACAGGATGAGTCAAACCCAA+AGG + chr1.1:7536144-7536163 MS.gene33120:intron 45.0%
AGATAGGGGATGATGTTCGA+AGG + chr1.1:7534380-7534399 MS.gene33120:CDS 45.0%
ATCAGTGCTTCTCTTCGACT+AGG + chr1.1:7534304-7534323 MS.gene33120:CDS 45.0%
CAAACAATACTAACCTCCGC+CGG - chr1.1:7534446-7534465 None:intergenic 45.0%
CTGAAGCCTAAACTCAATGG+TGG + chr1.1:7536864-7536883 MS.gene33120:CDS 45.0%
GACCGGAAAAGATACAGCTT+GGG - chr1.1:7535673-7535692 None:intergenic 45.0%
GACTTGATTGATGCACCTTC+CGG + chr1.1:7534424-7534443 MS.gene33120:CDS 45.0%
GCTTCTTAGCTGTGTAGGAA+TGG - chr1.1:7534263-7534282 None:intergenic 45.0%
GGAAATATCCTCCTAATCGC+GGG + chr1.1:7534901-7534920 MS.gene33120:CDS 45.0%
GGGAAATATCCTCCTAATCG+CGG + chr1.1:7534900-7534919 MS.gene33120:CDS 45.0%
GGTAGACAAGATCGTGTTTC+AGG - chr1.1:7535838-7535857 None:intergenic 45.0%
GTATTCCATCAGCAGTTCTG+AGG - chr1.1:7535004-7535023 None:intergenic 45.0%
GTCAAACCCAAAGGAGAGAT+TGG + chr1.1:7536153-7536172 MS.gene33120:CDS 45.0%
GTTTAGGCTTCAGCATGACA+TGG - chr1.1:7536857-7536876 None:intergenic 45.0%
TATGGTATGGTATAGCCTGG+AGG + chr1.1:7535354-7535373 MS.gene33120:intron 45.0%
TGACCGGAAAAGATACAGCT+TGG - chr1.1:7535674-7535693 None:intergenic 45.0%
TGGAACTCGAGTACACTCAA+TGG - chr1.1:7536347-7536366 None:intergenic 45.0%
TGGTATGGTATGGTATAGCC+TGG + chr1.1:7535351-7535370 MS.gene33120:intron 45.0%
TGTGCCTTCTCTCTTGAAGA+AGG + chr1.1:7535381-7535400 MS.gene33120:intron 45.0%
TTCACAATGTAGCAACCCCT+TGG - chr1.1:7535798-7535817 None:intergenic 45.0%
! ACGGACAAGTATTGTGGAAC+TGG + chr1.1:7535022-7535041 MS.gene33120:CDS 45.0%
! CAATGGTGGTTTAGAGTGGA+TGG + chr1.1:7536878-7536897 MS.gene33120:CDS 45.0%
! CGTACTGGTAAAAGGCTACA+AGG - chr1.1:7535961-7535980 None:intergenic 45.0%
! GACCCAAGCTGTATCTTTTC+CGG + chr1.1:7535668-7535687 MS.gene33120:intron 45.0%
!! AGTTTGCTGAAATTCTCCGG+AGG + chr1.1:7536769-7536788 MS.gene33120:CDS 45.0%
AGTGCTTCTCTTCGACTAGG+CGG + chr1.1:7534307-7534326 MS.gene33120:CDS 50.0%
ATGGGACCCAATCTCTCCTT+TGG - chr1.1:7536163-7536182 None:intergenic 50.0%
CACTGTAAGGGTTTGACCCT+TGG - chr1.1:7536068-7536087 None:intergenic 50.0%
CGAAGGCAATTCAAAGCTGC+AGG + chr1.1:7534397-7534416 MS.gene33120:CDS 50.0%
CGCAAACCTTGTACTCGTAC+TGG - chr1.1:7535976-7535995 None:intergenic 50.0%
CTAGGCGGTATAGGAGTAGA+AGG + chr1.1:7534322-7534341 MS.gene33120:CDS 50.0%
CTCGTGCTGAACTCAATTCC+AGG + chr1.1:7536266-7536285 MS.gene33120:CDS 50.0%
GAGAACTGCCGGACTCTAAA+AGG - chr1.1:7535059-7535078 None:intergenic 50.0%
GGAGGAAATCGATTAGAGCC+AGG + chr1.1:7536502-7536521 MS.gene33120:CDS 50.0%
GGCATAAAGTCATGATCGCC+GGG + chr1.1:7534968-7534987 MS.gene33120:CDS 50.0%
GGGCATAAAGTCATGATCGC+CGG + chr1.1:7534967-7534986 MS.gene33120:CDS 50.0%
TAACCGTCGTGCTGAGGAAT+GGG + chr1.1:7536902-7536921 MS.gene33120:CDS 50.0%
TCTCTTCGACTAGGCGGTAT+AGG + chr1.1:7534313-7534332 MS.gene33120:CDS 50.0%
TGGGACCCAATCTCTCCTTT+GGG - chr1.1:7536162-7536181 None:intergenic 50.0%
TGGTCGCGTGAAAATCCCAA+GGG + chr1.1:7534880-7534899 MS.gene33120:CDS 50.0%
TGTACTCGAGTTCCAAGCCA+CGG + chr1.1:7536352-7536371 MS.gene33120:CDS 50.0%
TTGATTGATGCACCTTCCGG+CGG + chr1.1:7534427-7534446 MS.gene33120:CDS 50.0%
! AGATTAGCTGACAGCCACCT+TGG + chr1.1:7536391-7536410 MS.gene33120:CDS 50.0%
!! GGACTCACTGTGAGAGCATT+TGG + chr1.1:7534346-7534365 MS.gene33120:CDS 50.0%
!! TGAGGCGAGCCTTGTTGAAA+TGG - chr1.1:7535492-7535511 None:intergenic 50.0%
AAGTCATGATCGCCGGGAAG+TGG + chr1.1:7534974-7534993 MS.gene33120:CDS 55.0%
AGTCATGATCGCCGGGAAGT+GGG + chr1.1:7534975-7534994 MS.gene33120:CDS 55.0%
CAATACTAACCTCCGCCGGA+AGG - chr1.1:7534442-7534461 None:intergenic 55.0%
CACTATCACCCGCGATTAGG+AGG - chr1.1:7534912-7534931 None:intergenic 55.0%
CTCGACATCCCAGAATACGC+CGG - chr1.1:7534233-7534252 None:intergenic 55.0%
CTGGTCGCGTGAAAATCCCA+AGG + chr1.1:7534879-7534898 MS.gene33120:CDS 55.0%
GGATGCCTCAGAACTGCTGA+TGG + chr1.1:7534996-7535015 MS.gene33120:CDS 55.0%
GGCGGTATAGGAGTAGAAGG+TGG + chr1.1:7534325-7534344 MS.gene33120:CDS 55.0%
GTAACCGTCGTGCTGAGGAA+TGG + chr1.1:7536901-7536920 MS.gene33120:CDS 55.0%
! CTTGGGATTTTCACGCGACC+AGG - chr1.1:7534881-7534900 None:intergenic 55.0%
!! TTCTGAGGCATCCCACTTCC+CGG - chr1.1:7534989-7535008 None:intergenic 55.0%
AGCTACACGAGCTCGCCAAG+GGG + chr1.1:7535780-7535799 MS.gene33120:intron 60.0%
ATTGATGCACCTTCCGGCGG+AGG + chr1.1:7534430-7534449 MS.gene33120:CDS 60.0%
GACATCCCAGAATACGCCGG+TGG - chr1.1:7534230-7534249 None:intergenic 60.0%
GAGCCCATTCCTCAGCACGA+CGG - chr1.1:7536908-7536927 None:intergenic 60.0%
GAGCTACACGAGCTCGCCAA+GGG + chr1.1:7535779-7535798 MS.gene33120:intron 60.0%
GATGGGTAACCGTCGTGCTG+AGG + chr1.1:7536896-7536915 MS.gene33120:CDS 60.0%
GGTGTCCACCGGCGTATTCT+GGG + chr1.1:7534222-7534241 MS.gene33120:CDS 60.0%
TGAGCTACACGAGCTCGCCA+AGG + chr1.1:7535778-7535797 MS.gene33120:intron 60.0%
TGGTGTCCACCGGCGTATTC+TGG + chr1.1:7534221-7534240 MS.gene33120:CDS 60.0%
! GAGAAGGCACAGACACCTCC+AGG - chr1.1:7535372-7535391 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 7534220 7537095 7534220 ID=MS.gene33120
chr1.1 mRNA 7534220 7537095 7534220 ID=MS.gene33120.t1;Parent=MS.gene33120
chr1.1 exon 7534220 7534451 7534220 ID=MS.gene33120.t1.exon1;Parent=MS.gene33120.t1
chr1.1 CDS 7534220 7534451 7534220 ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1
chr1.1 exon 7534830 7535098 7534830 ID=MS.gene33120.t1.exon2;Parent=MS.gene33120.t1
chr1.1 CDS 7534830 7535098 7534830 ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1
chr1.1 exon 7535966 7536028 7535966 ID=MS.gene33120.t1.exon3;Parent=MS.gene33120.t1
chr1.1 CDS 7535966 7536028 7535966 ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1
chr1.1 exon 7536148 7536533 7536148 ID=MS.gene33120.t1.exon4;Parent=MS.gene33120.t1
chr1.1 CDS 7536148 7536533 7536148 ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1
chr1.1 exon 7536764 7536963 7536764 ID=MS.gene33120.t1.exon5;Parent=MS.gene33120.t1
chr1.1 CDS 7536764 7536963 7536764 ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1
chr1.1 exon 7537061 7537095 7537061 ID=MS.gene33120.t1.exon6;Parent=MS.gene33120.t1
chr1.1 CDS 7537061 7537095 7537061 ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1
Gene Sequence

>MS.gene33120

ATGGTGTCCACCGGCGTATTCTGGGATGTCGAGAACTGTTCCATTCCTACACAGCTAAGAAGCTATGAAGTGATTAAACGAAGAATCAGTGCTTCTCTTCGACTAGGCGGTATAGGAGTAGAAGGTGGACTCACTGTGAGAGCATTTGGAAACGTTAAGAAGATAGGGGATGATGTTCGAAGGCAATTCAAAGCTGCAGGTGTTGACTTGATTGATGCACCTTCCGGCGGAGGTTAGTATTGTTTGTTTAACTCTTCATTTCTTTTGGTTTATGTCAACCCAGAATAGTTTTTTTGTATGATCGTGTATAATTGGTCCTGGAACCCATTTTTAAAATGTTTTCTTTGAGACTTATGAGTTTGATTTATTTGTTTTAGACTAATAGTACTTTGTAATGAGCTAGTTTTTGATTGACAATAATTTGTATTTATTAAGATTAACAGCCAAAGAGGAATGTGAAATTGAAATTATTGATGAGGATAGATATAAGAGATGAGACAAGTTTCAGAATGACATCATATGGGTCTGATGTTATGATTAATGTTGCGATTATATGATTTGTGATTTTATGTCTCCTTACTGACTACTGATGACTATCATGTTTTTGTAGGTGTAAAAAGAAATGGATCTGATGTTATGCTTATTAGCAACATGCATTCCTGGTCGCGTGAAAATCCCAAGGGAAATATCCTCCTAATCGCGGGTGATAGTGATTATGTTGAAACCTTGAAGTTTATGGAAGAAGGTGGGCATAAAGTCATGATCGCCGGGAAGTGGGATGCCTCAGAACTGCTGATGGAATACGGACAAGTATTGTGGAACTGGCCTAACATAGTCCTTTTAGAGTCCGGCAGTTCTCCCATATACTATCGAAACCCGGTTAGTTTCATTTCATTCAATTTACTTCTTTTTGCACTGATTTAACATTCCTATTTTTGGAAATGAAAACATTGAGAGAGGTAGTAGAGTTTGGTAATTTTTTAGTTGGGTTACTAATTATTTTAGTGATTCTATTAGAGTTATCACAGCAGGGACTAACTAATTCTGTTAGTGGACAGAATTATAATTAGACTTTGGAGGGAAAGCCGCTCTTCAATTAAATATTGCAGTTAGGAGAAACTTACTGTAGGATGGTATGGTATGGTATAGCCTGGAGGTGTCTGTGCCTTCTCTCTTGAAGAAGGAAACATTATGCTAAGTAAAACCTAACAATAGAAGTATAACATTCATGTAGCTTTCACCATGACTGTAAGTCTGTAACAAATCTAACCATTTCAACAAGGCTCGCCTCATGTAAAATTATTCAACAATAAGCAATATACTAACATTCATGTAAAACACCTCTATATGTTTTTACTTCCAACATAGTCCTTGAGTAACTTTAATTTATGAGGAAAGAGTTTAAAATTGTAATCAAATGTTAGGTTTTAGGGGTTTTACTATAGTTGGACCCAAGCTGTATCTTTTCCGGTCATGTTATATCGATTTGAACGCACGATTCAACCGTCTCTATGATTTTTTGCGGCAATCTCTTCCTCTCCTACCAAATCTTGATTCTTGAGCTACACGAGCTCGCCAAGGGGTTGCTACATTGTGAACTCATACGATCTTATGTCCTGAAACACGATCTTGTCTACCTTGATGACAGTACTAAGTTTGTTTTCCCCAATATAAATAAGAACACTTTTTACATTATCAAATGTTATCAGGTAAGATTTTATTAATTTTCTAGTATATTCCTTGTAGCCTTTTACCAGTACGAGTACAAGGTTTGCGACTAGACTAGCTGTAAAGCGTTTAAACTTACAGGTTTTTCCCTTTATATTCTGATAAGCATTTGTTGTGCCAAGGGTCAAACCCTTACAGTGTATGCCTTCAATGCCCATATGCAATTTTAGACATTGATTGCTAACGTTTTTCATTTACAGGATGAGTCAAACCCAAAGGAGAGATTGGGTCCCATAAATGTTGTTATTCGAATTTTGCAAATTTTACAGCCGGAGCATGTATTTCCTACACTTGAAAACATCAAAGAATGCTATGATGCTCGTGCTGAACTCAATTCCAGGAATAATATAAGTATTGCTGATGCTTTGCAATGGGCATGTGACCACAAGAAAGTTACCATTGAGTGTACTCGAGTTCCAAGCCACGGCAATATTAGTTTGTACAGATTAGCTGACAGCCACCTTGGAATTTGTTCAAACCCTAAGGTTGGGACCAATATTGATTATATAGAAGTGTGGCCACTATTGCAAACTTTTTTGCTCAACAATATTGGTGGAGGAAATCGATTAGAGCCAGGAAAATCCATGTACGTTTTTTATTTTCATTTTAATTGCACTCTTTTATATTTTGTCCAGTTCAATGATTTATTATCGAAAATTAATGTTAAGAGATGATTGTGTAATTCTTGTTATATTAAATATGAATAATTTGAGTAATTGAGCTCAATTATTTCCTGATTGAGTAATTGATGATCGAATAATTTGATATGATGATTGGAGTATAAGTTGAAATTAAGATTGAACATTTTCTGTTTAGGTTTGAGTTTGCTGAAATTCTCCGGAGGAAGTTCTTTAATGTCTGTAACTTTGGTGAAAGGTTTCTGATCGGTGATATATTAACTGTAATCCATGTCATGCTGAAGCCTAAACTCAATGGTGGTTTAGAGTGGATGGGTAACCGTCGTGCTGAGGAATGGGCTCCAAATTTCAAAATGCGGAATATTAGAAAATATAAAGGTACAGCGTTCATAAATATTTTTGGTAGCTACAAAATTGATAGTAAGATTTATTTTTACACCTCTAAAATTGTCGTTTTTTGGTTGTTTCTTTACAGAGGAAGACATTGTAGGCGTAGCTTCAAGACCTTGA

Protein sequence

>MS.gene33120.t1

MVSTGVFWDVENCSIPTQLRSYEVIKRRISASLRLGGIGVEGGLTVRAFGNVKKIGDDVRRQFKAAGVDLIDAPSGGGVKRNGSDVMLISNMHSWSRENPKGNILLIAGDSDYVETLKFMEEGGHKVMIAGKWDASELLMEYGQVLWNWPNIVLLESGSSPIYYRNPPFTSTSTRFATRLAVKRLNLQDESNPKERLGPINVVIRILQILQPEHVFPTLENIKECYDARAELNSRNNISIADALQWACDHKKVTIECTRVPSHGNISLYRLADSHLGICSNPKVGTNIDYIEVWPLLQTFLLNNIGGGNRLEPGKSMFEFAEILRRKFFNVCNFGERFLIGDILTVIHVMLKPKLNGGLEWMGNRRAEEWAPNFKMRNIRKYKEEDIVGVASRP