Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33120.t1 | XP_006427874.1 | 27.6 | 250 | 147 | 9 | 2 | 233 | 50 | 283 | 1.20E-16 | 97.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33120.t1 | V4UNT7 | 27.6 | 250 | 147 | 9 | 2 | 233 | 50 | 283 | 8.5e-17 | 97.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene30285 | MS.gene33120 | PPI |
MS.gene33120 | MS.gene67910 | PPI |
MS.gene33120 | MS.gene33586 | PPI |
MS.gene33120 | MS.gene007962 | PPI |
MS.gene62998 | MS.gene33120 | PPI |
MS.gene30034 | MS.gene33120 | PPI |
MS.gene65952 | MS.gene33120 | PPI |
MS.gene33120 | MS.gene026616 | PPI |
MS.gene33120 | MS.gene039955 | PPI |
MS.gene33120 | MS.gene054900 | PPI |
MS.gene33120 | MS.gene031882 | PPI |
MS.gene33120 | MS.gene99888 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33120.t1 | MTR_7g110390 | 26.667 | 150 | 104 | 3 | 5 | 153 | 14 | 158 | 3.08e-17 | 83.6 |
MS.gene33120.t1 | MTR_3g095410 | 26.786 | 168 | 115 | 5 | 2 | 168 | 55 | 215 | 5.77e-14 | 74.3 |
MS.gene33120.t1 | MTR_3g050240 | 26.415 | 159 | 105 | 4 | 5 | 162 | 175 | 322 | 3.54e-11 | 65.1 |
MS.gene33120.t1 | MTR_3g050240 | 29.139 | 151 | 98 | 5 | 5 | 153 | 11 | 154 | 5.62e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33120.t1 | AT5G09840 | 26.820 | 261 | 156 | 11 | 2 | 240 | 71 | 318 | 2.44e-17 | 84.7 |
MS.gene33120.t1 | AT3G62210 | 26.994 | 163 | 109 | 5 | 1 | 162 | 21 | 174 | 1.40e-15 | 77.0 |
MS.gene33120.t1 | AT3G62200 | 26.875 | 160 | 107 | 4 | 4 | 162 | 30 | 180 | 5.63e-14 | 73.9 |
MS.gene33120.t1 | AT3G62050 | 29.752 | 121 | 70 | 5 | 4 | 121 | 14 | 122 | 3.38e-11 | 61.6 |
Find 105 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCGAATAACAACATTTA+TGG | 0.129146 | 1.1:-7536179 | None:intergenic |
TGTTGAAACCTTGAAGTTTA+TGG | 0.131106 | 1.1:+7534936 | MS.gene33120:CDS |
TGTAAAGCGTTTAAACTTAC+AGG | 0.197901 | 1.1:+7536007 | MS.gene33120:CDS |
TGGTGTCCACCGGCGTATTC+TGG | 0.214087 | 1.1:+7534221 | MS.gene33120:CDS |
ATGGGACCCAATCTCTCCTT+TGG | 0.269593 | 1.1:-7536160 | None:intergenic |
AACCGGGTTTCGATAGTATA+TGG | 0.277742 | 1.1:-7535079 | None:intergenic |
TTCTTTAATGTCTGTAACTT+TGG | 0.293926 | 1.1:+7536795 | MS.gene33120:CDS |
TTTGGAAACGTTAAGAAGAT+AGG | 0.317087 | 1.1:+7534364 | MS.gene33120:CDS |
ATTCGAATAACAACATTTAT+GGG | 0.319102 | 1.1:-7536178 | None:intergenic |
GAGAACTGCCGGACTCTAAA+AGG | 0.325854 | 1.1:-7535056 | None:intergenic |
AGCAATACTTATATTATTCC+TGG | 0.335011 | 1.1:-7536284 | None:intergenic |
TTCTGAGGCATCCCACTTCC+CGG | 0.343788 | 1.1:-7534986 | None:intergenic |
GGACTCACTGTGAGAGCATT+TGG | 0.344271 | 1.1:+7534346 | MS.gene33120:CDS |
TCAATATTGGTCCCAACCTT+AGG | 0.345166 | 1.1:-7536427 | None:intergenic |
CTTGTACTCGTACTGGTAAA+AGG | 0.346241 | 1.1:-7535966 | None:intergenic |
ACCTTCTTCCATAAACTTCA+AGG | 0.372927 | 1.1:-7534944 | None:intergenic |
TGGGACCCAATCTCTCCTTT+GGG | 0.373712 | 1.1:-7536159 | None:intergenic |
TTATTAGCAACATGCATTCC+TGG | 0.376131 | 1.1:+7534860 | MS.gene33120:CDS |
CGGAATATTAGAAAATATAA+AGG | 0.388369 | 1.1:+7536942 | MS.gene33120:CDS |
CTCGTGCTGAACTCAATTCC+AGG | 0.394340 | 1.1:+7536266 | MS.gene33120:CDS |
CACTTCTATATAATCAATAT+TGG | 0.395917 | 1.1:-7536440 | None:intergenic |
GACTTGATTGATGCACCTTC+CGG | 0.397470 | 1.1:+7534424 | MS.gene33120:CDS |
GGTGTCCACCGGCGTATTCT+GGG | 0.404162 | 1.1:+7534222 | MS.gene33120:CDS |
TCTCTTCGACTAGGCGGTAT+AGG | 0.405051 | 1.1:+7534313 | MS.gene33120:CDS |
CAATATTGGTCCCAACCTTA+GGG | 0.414014 | 1.1:-7536426 | None:intergenic |
GTCAAACCCAAAGGAGAGAT+TGG | 0.419092 | 1.1:+7536153 | MS.gene33120:CDS |
AATCACTATCACCCGCGATT+AGG | 0.434677 | 1.1:-7534912 | None:intergenic |
TTTACAGAGGAAGACATTGT+AGG | 0.440045 | 1.1:+7537054 | MS.gene33120:intron |
GACTCTAAAAGGACTATGTT+AGG | 0.442516 | 1.1:-7535045 | None:intergenic |
ACGGACAAGTATTGTGGAAC+TGG | 0.443416 | 1.1:+7535022 | MS.gene33120:CDS |
TTTGTTCAAACCCTAAGGTT+GGG | 0.454926 | 1.1:+7536416 | MS.gene33120:CDS |
TCTAAACCACCATTGAGTTT+AGG | 0.456749 | 1.1:-7536870 | None:intergenic |
CTAGGCGGTATAGGAGTAGA+AGG | 0.461409 | 1.1:+7534322 | MS.gene33120:CDS |
TAACCGTCGTGCTGAGGAAT+GGG | 0.462670 | 1.1:+7536902 | MS.gene33120:CDS |
CAATGGTGGTTTAGAGTGGA+TGG | 0.462773 | 1.1:+7536878 | MS.gene33120:CDS |
TTGGAAACGTTAAGAAGATA+GGG | 0.462817 | 1.1:+7534365 | MS.gene33120:CDS |
TGGAATTTGTTCAAACCCTA+AGG | 0.466799 | 1.1:+7536411 | MS.gene33120:CDS |
ACCTTGAAGTTTATGGAAGA+AGG | 0.468779 | 1.1:+7534943 | MS.gene33120:CDS |
TTGAGTTTGCTGAAATTCTC+CGG | 0.469079 | 1.1:+7536766 | MS.gene33120:CDS |
AAGTCATGATCGCCGGGAAG+TGG | 0.469652 | 1.1:+7534974 | MS.gene33120:CDS |
ATTGATGCACCTTCCGGCGG+AGG | 0.472148 | 1.1:+7534430 | MS.gene33120:CDS |
GATTAGGAGGATATTTCCCT+TGG | 0.476900 | 1.1:-7534896 | None:intergenic |
CGCAAACCTTGTACTCGTAC+TGG | 0.478424 | 1.1:-7535973 | None:intergenic |
AAACTAATATTGCCGTGGCT+TGG | 0.492637 | 1.1:-7536364 | None:intergenic |
CGAAGGCAATTCAAAGCTGC+AGG | 0.493964 | 1.1:+7534397 | MS.gene33120:CDS |
TTGCTCAACAATATTGGTGG+AGG | 0.495372 | 1.1:+7536484 | MS.gene33120:CDS |
ATGTCTGTAACTTTGGTGAA+AGG | 0.498599 | 1.1:+7536802 | MS.gene33120:CDS |
ATTTGTTCAAACCCTAAGGT+TGG | 0.500980 | 1.1:+7536415 | MS.gene33120:CDS |
TCAGAACTGCTGATGGAATA+CGG | 0.510494 | 1.1:+7535003 | MS.gene33120:CDS |
CACTATCACCCGCGATTAGG+AGG | 0.515264 | 1.1:-7534909 | None:intergenic |
GCTTCTTAGCTGTGTAGGAA+TGG | 0.518991 | 1.1:-7534260 | None:intergenic |
AGTGTAGGAAATACATGCTC+CGG | 0.521068 | 1.1:-7536217 | None:intergenic |
GGCATAAAGTCATGATCGCC+GGG | 0.521161 | 1.1:+7534968 | MS.gene33120:CDS |
TCAAACCCAAAGGAGAGATT+GGG | 0.524842 | 1.1:+7536154 | MS.gene33120:CDS |
ACCGGGTTTCGATAGTATAT+GGG | 0.527100 | 1.1:-7535078 | None:intergenic |
ATAGTATATGGGAGAACTGC+CGG | 0.528774 | 1.1:-7535067 | None:intergenic |
GGATGCCTCAGAACTGCTGA+TGG | 0.536396 | 1.1:+7534996 | MS.gene33120:CDS |
GTAACCGTCGTGCTGAGGAA+TGG | 0.536553 | 1.1:+7536901 | MS.gene33120:CDS |
ATTAGGAGGATATTTCCCTT+GGG | 0.539334 | 1.1:-7534895 | None:intergenic |
TATTGCTGATGCTTTGCAAT+GGG | 0.540134 | 1.1:+7536300 | MS.gene33120:CDS |
TCATAGCTTCTTAGCTGTGT+AGG | 0.543817 | 1.1:-7534265 | None:intergenic |
GGGCATAAAGTCATGATCGC+CGG | 0.545017 | 1.1:+7534967 | MS.gene33120:CDS |
AGATTAGCTGACAGCCACCT+TGG | 0.547787 | 1.1:+7536391 | MS.gene33120:CDS |
AGACATTAAAGAACTTCCTC+CGG | 0.549304 | 1.1:-7536785 | None:intergenic |
GGAGGAAATCGATTAGAGCC+AGG | 0.557630 | 1.1:+7536502 | MS.gene33120:CDS |
GGAAATATCCTCCTAATCGC+GGG | 0.561694 | 1.1:+7534901 | MS.gene33120:CDS |
AACTCAATGGTGGTTTAGAG+TGG | 0.565618 | 1.1:+7536874 | MS.gene33120:CDS |
GTTTAGGCTTCAGCATGACA+TGG | 0.572400 | 1.1:-7536854 | None:intergenic |
AGTCATGATCGCCGGGAAGT+GGG | 0.573165 | 1.1:+7534975 | MS.gene33120:CDS |
TTGAAGTTTATGGAAGAAGG+TGG | 0.579140 | 1.1:+7534946 | MS.gene33120:CDS |
TGGAATACGGACAAGTATTG+TGG | 0.593268 | 1.1:+7535016 | MS.gene33120:CDS |
TTTGGTGAAAGGTTTCTGAT+CGG | 0.594767 | 1.1:+7536813 | MS.gene33120:CDS |
ACTCAATGGTAACTTTCTTG+TGG | 0.596798 | 1.1:-7536330 | None:intergenic |
ATGCTGAAGCCTAAACTCAA+TGG | 0.597722 | 1.1:+7536861 | MS.gene33120:CDS |
TTGATTGATGCACCTTCCGG+CGG | 0.599582 | 1.1:+7534427 | MS.gene33120:CDS |
TAGGGTTTGAACAAATTCCA+AGG | 0.603209 | 1.1:-7536408 | None:intergenic |
CAATACTAACCTCCGCCGGA+AGG | 0.607198 | 1.1:-7534439 | None:intergenic |
GGGAAATATCCTCCTAATCG+CGG | 0.607421 | 1.1:+7534900 | MS.gene33120:CDS |
GATGGGTAACCGTCGTGCTG+AGG | 0.615512 | 1.1:+7536896 | MS.gene33120:CDS |
TGGAACTCGAGTACACTCAA+TGG | 0.616193 | 1.1:-7536344 | None:intergenic |
TGAAGTTTATGGAAGAAGGT+GGG | 0.621230 | 1.1:+7534947 | MS.gene33120:CDS |
TGGAAACGTTAAGAAGATAG+GGG | 0.627742 | 1.1:+7534366 | MS.gene33120:CDS |
CTGAAGCCTAAACTCAATGG+TGG | 0.628478 | 1.1:+7536864 | MS.gene33120:CDS |
TGTACAAACTAATATTGCCG+TGG | 0.637325 | 1.1:-7536369 | None:intergenic |
CTGGTCGCGTGAAAATCCCA+AGG | 0.638364 | 1.1:+7534879 | MS.gene33120:CDS |
GGGCTCCAAATTTCAAAATG+CGG | 0.638600 | 1.1:+7536922 | MS.gene33120:CDS |
ACAATCATAATGGTGTCCAC+CGG | 0.640527 | 1.1:+7534211 | None:intergenic |
GTATTCCATCAGCAGTTCTG+AGG | 0.642202 | 1.1:-7535001 | None:intergenic |
GTATTGCTGATGCTTTGCAA+TGG | 0.642280 | 1.1:+7536299 | MS.gene33120:CDS |
ATCAGTGCTTCTCTTCGACT+AGG | 0.644770 | 1.1:+7534304 | MS.gene33120:CDS |
AATGGTGGTTTAGAGTGGAT+GGG | 0.650032 | 1.1:+7536879 | MS.gene33120:CDS |
AGATAGGGGATGATGTTCGA+AGG | 0.651387 | 1.1:+7534380 | MS.gene33120:CDS |
CAAACAATACTAACCTCCGC+CGG | 0.657717 | 1.1:-7534443 | None:intergenic |
ACAGGATGAGTCAAACCCAA+AGG | 0.659275 | 1.1:+7536144 | MS.gene33120:intron |
TGTACTCGAGTTCCAAGCCA+CGG | 0.661299 | 1.1:+7536352 | MS.gene33120:CDS |
TCCCATATACTATCGAAACC+CGG | 0.668326 | 1.1:+7535077 | MS.gene33120:CDS |
ATATTGATTATATAGAAGTG+TGG | 0.680795 | 1.1:+7536443 | MS.gene33120:CDS |
GAGCCCATTCCTCAGCACGA+CGG | 0.681884 | 1.1:-7536905 | None:intergenic |
AGTGCTTCTCTTCGACTAGG+CGG | 0.682637 | 1.1:+7534307 | MS.gene33120:CDS |
GGCGGTATAGGAGTAGAAGG+TGG | 0.691425 | 1.1:+7534325 | MS.gene33120:CDS |
TGGTCGCGTGAAAATCCCAA+GGG | 0.691802 | 1.1:+7534880 | MS.gene33120:CDS |
GACATCCCAGAATACGCCGG+TGG | 0.704952 | 1.1:-7534227 | None:intergenic |
CTCGACATCCCAGAATACGC+CGG | 0.705331 | 1.1:-7534230 | None:intergenic |
GGTTTGAACAAATTCCAAGG+TGG | 0.708113 | 1.1:-7536405 | None:intergenic |
AGTTTGCTGAAATTCTCCGG+AGG | 0.726467 | 1.1:+7536769 | MS.gene33120:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAGAAAACATTTTAAAAAT+GGG | - | chr1.1:7534546-7534565 | None:intergenic | 10.0% |
!! | TAAAATTGTAATCAAATGTT+AGG | + | chr1.1:7535622-7535641 | MS.gene33120:intron | 15.0% |
!!! | AAAAGTGTTCTTATTTATAT+TGG | - | chr1.1:7535888-7535907 | None:intergenic | 15.0% |
!!! | AAAGTGTTCTTATTTATATT+GGG | - | chr1.1:7535887-7535906 | None:intergenic | 15.0% |
!!! | CAAAGAAAACATTTTAAAAA+TGG | - | chr1.1:7534547-7534566 | None:intergenic | 15.0% |
!! | AAATGCTTATCAGAATATAA+AGG | - | chr1.1:7536039-7536058 | None:intergenic | 20.0% |
!! | AATGCTTATCAGAATATAAA+GGG | - | chr1.1:7536038-7536057 | None:intergenic | 20.0% |
!! | AATGTTATACTTCTATTGTT+AGG | - | chr1.1:7535427-7535446 | None:intergenic | 20.0% |
!! | AATTATAATTAGACTTTGGA+GGG | + | chr1.1:7535278-7535297 | MS.gene33120:intron | 20.0% |
!! | AATTCGAATAACAACATTTA+TGG | - | chr1.1:7536182-7536201 | None:intergenic | 20.0% |
!! | ACAGAATTATAATTAGACTT+TGG | + | chr1.1:7535274-7535293 | MS.gene33120:intron | 20.0% |
!! | ATCATACAAAAAAACTATTC+TGG | - | chr1.1:7534502-7534521 | None:intergenic | 20.0% |
!! | ATGAAAATAAAAAACGTACA+TGG | - | chr1.1:7536533-7536552 | None:intergenic | 20.0% |
!! | ATTCGAATAACAACATTTAT+GGG | - | chr1.1:7536181-7536200 | None:intergenic | 20.0% |
!! | CACTTCTATATAATCAATAT+TGG | - | chr1.1:7536443-7536462 | None:intergenic | 20.0% |
!! | CGGAATATTAGAAAATATAA+AGG | + | chr1.1:7536942-7536961 | MS.gene33120:CDS | 20.0% |
!! | GAATAATTTGATATGATGAT+TGG | + | chr1.1:7536702-7536721 | MS.gene33120:intron | 20.0% |
!! | TCATAAATTAAAGTTACTCA+AGG | - | chr1.1:7535592-7535611 | None:intergenic | 20.0% |
!! | TCATACAAAAAAACTATTCT+GGG | - | chr1.1:7534501-7534520 | None:intergenic | 20.0% |
!! | TGAAATTGAAATTATTGATG+AGG | + | chr1.1:7534676-7534695 | MS.gene33120:intron | 20.0% |
!! | TTACATTATCAAATGTTATC+AGG | + | chr1.1:7535907-7535926 | MS.gene33120:intron | 20.0% |
!! | TTCAATTAAATATTGCAGTT+AGG | + | chr1.1:7535311-7535330 | MS.gene33120:intron | 20.0% |
!!! | AAGTGTTCTTATTTATATTG+GGG | - | chr1.1:7535886-7535905 | None:intergenic | 20.0% |
!!! | AGTTTGGTAATTTTTTAGTT+GGG | + | chr1.1:7535186-7535205 | MS.gene33120:intron | 20.0% |
!!! | ATATTGATTATATAGAAGTG+TGG | + | chr1.1:7536443-7536462 | MS.gene33120:CDS | 20.0% |
!!! | ATGTTTTCATTTCCAAAAAT+AGG | - | chr1.1:7535151-7535170 | None:intergenic | 20.0% |
!!! | TAATCAAATGTTAGGTTTTA+GGG | + | chr1.1:7535630-7535649 | MS.gene33120:intron | 20.0% |
!!! | TGATTTAACATTCCTATTTT+TGG | + | chr1.1:7535136-7535155 | MS.gene33120:intron | 20.0% |
!!! | TTGAGTAACTTTAATTTATG+AGG | + | chr1.1:7535591-7535610 | MS.gene33120:intron | 20.0% |
!!! | TTGTTGAATAATTTTACATG+AGG | - | chr1.1:7535510-7535529 | None:intergenic | 20.0% |
! | AGCAATACTTATATTATTCC+TGG | - | chr1.1:7536287-7536306 | None:intergenic | 25.0% |
! | GAATTATAATTAGACTTTGG+AGG | + | chr1.1:7535277-7535296 | MS.gene33120:intron | 25.0% |
! | TCGATAATAAATCATTGAAC+TGG | - | chr1.1:7536582-7536601 | None:intergenic | 25.0% |
! | TGCAATATTTAATTGAAGAG+CGG | - | chr1.1:7535308-7535327 | None:intergenic | 25.0% |
! | TTCTTTAATGTCTGTAACTT+TGG | + | chr1.1:7536795-7536814 | MS.gene33120:CDS | 25.0% |
! | TTGAATGAAATGAAACTAAC+CGG | - | chr1.1:7535099-7535118 | None:intergenic | 25.0% |
! | TTGGAAGTAAAAACATATAG+AGG | - | chr1.1:7535563-7535582 | None:intergenic | 25.0% |
! | TTTGTAGGTGTAAAAAGAAA+TGG | + | chr1.1:7534823-7534842 | MS.gene33120:intron | 25.0% |
! | TTTGTATGATCGTGTATAAT+TGG | + | chr1.1:7534512-7534531 | MS.gene33120:intron | 25.0% |
!! | AATTTTGCAAATTTTACAGC+CGG | + | chr1.1:7536198-7536217 | MS.gene33120:CDS | 25.0% |
!! | ACAGCGTTCATAAATATTTT+TGG | + | chr1.1:7536966-7536985 | MS.gene33120:intron | 25.0% |
!! | AGATTGAACATTTTCTGTTT+AGG | + | chr1.1:7536742-7536761 | MS.gene33120:intron | 25.0% |
!! | CAATGTCTAAAATTGCATAT+GGG | - | chr1.1:7536104-7536123 | None:intergenic | 25.0% |
!! | GTAATCAAATGTTAGGTTTT+AGG | + | chr1.1:7535629-7535648 | MS.gene33120:intron | 25.0% |
!! | GTTTAACTCTTCATTTCTTT+TGG | + | chr1.1:7534465-7534484 | MS.gene33120:intron | 25.0% |
!! | TCAATGTCTAAAATTGCATA+TGG | - | chr1.1:7536105-7536124 | None:intergenic | 25.0% |
!!! | AATCAAATGTTAGGTTTTAG+GGG | + | chr1.1:7535631-7535650 | MS.gene33120:intron | 25.0% |
!!! | ACTTTTTTGCTCAACAATAT+TGG | + | chr1.1:7536478-7536497 | MS.gene33120:CDS | 25.0% |
!!! | ATATTCCGCATTTTGAAATT+TGG | - | chr1.1:7536930-7536949 | None:intergenic | 25.0% |
!!! | GAGTTTGGTAATTTTTTAGT+TGG | + | chr1.1:7535185-7535204 | MS.gene33120:intron | 25.0% |
AGCAAAAAAGTTTGCAATAG+TGG | - | chr1.1:7536469-7536488 | None:intergenic | 30.0% | |
AGTTTCAGAATGACATCATA+TGG | + | chr1.1:7534720-7534739 | MS.gene33120:intron | 30.0% | |
ATTAAGATTAACAGCCAAAG+AGG | + | chr1.1:7534649-7534668 | MS.gene33120:intron | 30.0% | |
CAAATCTAACCATTTCAACA+AGG | + | chr1.1:7535480-7535499 | MS.gene33120:intron | 30.0% | |
GTTTCAGAATGACATCATAT+GGG | + | chr1.1:7534721-7534740 | MS.gene33120:intron | 30.0% | |
TCAAATCGATATAACATGAC+CGG | - | chr1.1:7535690-7535709 | None:intergenic | 30.0% | |
TGAATGAAATGAAACTAACC+GGG | - | chr1.1:7535098-7535117 | None:intergenic | 30.0% | |
TGTTGAAACCTTGAAGTTTA+TGG | + | chr1.1:7534936-7534955 | MS.gene33120:CDS | 30.0% | |
TTCAATTTCACATTCCTCTT+TGG | - | chr1.1:7534666-7534685 | None:intergenic | 30.0% | |
TTGGAAACGTTAAGAAGATA+GGG | + | chr1.1:7534365-7534384 | MS.gene33120:CDS | 30.0% | |
TTTGGAAACGTTAAGAAGAT+AGG | + | chr1.1:7534364-7534383 | MS.gene33120:CDS | 30.0% | |
! | CCAAAAAACGACAATTTTAG+AGG | - | chr1.1:7537027-7537046 | None:intergenic | 30.0% |
! | TGCTAACGTTTTTCATTTAC+AGG | + | chr1.1:7536126-7536145 | MS.gene33120:intron | 30.0% |
! | TGTAAAGCGTTTAAACTTAC+AGG | + | chr1.1:7536007-7536026 | MS.gene33120:CDS | 30.0% |
! | TTTAGGGGTTTTACTATAGT+TGG | + | chr1.1:7535646-7535665 | MS.gene33120:intron | 30.0% |
! | TTTTTGCTCAACAATATTGG+TGG | + | chr1.1:7536481-7536500 | MS.gene33120:CDS | 30.0% |
!! | ACATTTTAAAAATGGGTTCC+AGG | - | chr1.1:7534539-7534558 | None:intergenic | 30.0% |
!! | GATGACTATCATGTTTTTGT+AGG | + | chr1.1:7534808-7534827 | MS.gene33120:intron | 30.0% |
!!! | CCTCTAAAATTGTCGTTTTT+TGG | + | chr1.1:7537024-7537043 | MS.gene33120:intron | 30.0% |
!!! | TCTTTGATGTTTTCAAGTGT+AGG | - | chr1.1:7536235-7536254 | None:intergenic | 30.0% |
!!! | TTTTGGTTGTTTCTTTACAG+AGG | + | chr1.1:7537041-7537060 | MS.gene33120:intron | 30.0% |
AAACTTACTGTAGGATGGTA+TGG | + | chr1.1:7535336-7535355 | MS.gene33120:intron | 35.0% | |
AAGTTACTCAAGGACTATGT+TGG | - | chr1.1:7535582-7535601 | None:intergenic | 35.0% | |
ACCTTCTTCCATAAACTTCA+AGG | - | chr1.1:7534947-7534966 | None:intergenic | 35.0% | |
ACCTTGAAGTTTATGGAAGA+AGG | + | chr1.1:7534943-7534962 | MS.gene33120:CDS | 35.0% | |
ACTCAATGGTAACTTTCTTG+TGG | - | chr1.1:7536333-7536352 | None:intergenic | 35.0% | |
AGACATTAAAGAACTTCCTC+CGG | - | chr1.1:7536788-7536807 | None:intergenic | 35.0% | |
AGTTAGGAGAAACTTACTGT+AGG | + | chr1.1:7535327-7535346 | MS.gene33120:intron | 35.0% | |
ATAGTCATCAGTAGTCAGTA+AGG | - | chr1.1:7534797-7534816 | None:intergenic | 35.0% | |
ATGTCTGTAACTTTGGTGAA+AGG | + | chr1.1:7536802-7536821 | MS.gene33120:CDS | 35.0% | |
ATTAGGAGGATATTTCCCTT+GGG | - | chr1.1:7534898-7534917 | None:intergenic | 35.0% | |
ATTTGTTCAAACCCTAAGGT+TGG | + | chr1.1:7536415-7536434 | MS.gene33120:CDS | 35.0% | |
CAAACTTAGTACTGTCATCA+AGG | - | chr1.1:7535859-7535878 | None:intergenic | 35.0% | |
CGATCATCAATTACTCAATC+AGG | - | chr1.1:7536683-7536702 | None:intergenic | 35.0% | |
CTATTAGAGTTATCACAGCA+GGG | + | chr1.1:7535230-7535249 | MS.gene33120:intron | 35.0% | |
GGAAATGAAAACATTGAGAG+AGG | + | chr1.1:7535157-7535176 | MS.gene33120:intron | 35.0% | |
GGACTAACTAATTCTGTTAG+TGG | + | chr1.1:7535251-7535270 | MS.gene33120:intron | 35.0% | |
GTAGCTCAAGAATCAAGATT+TGG | - | chr1.1:7535766-7535785 | None:intergenic | 35.0% | |
TAGGGTTTGAACAAATTCCA+AGG | - | chr1.1:7536411-7536430 | None:intergenic | 35.0% | |
TATTGCTGATGCTTTGCAAT+GGG | + | chr1.1:7536300-7536319 | MS.gene33120:CDS | 35.0% | |
TCTAAACCACCATTGAGTTT+AGG | - | chr1.1:7536873-7536892 | None:intergenic | 35.0% | |
TCTATTAGAGTTATCACAGC+AGG | + | chr1.1:7535229-7535248 | MS.gene33120:intron | 35.0% | |
TGAAGTTTATGGAAGAAGGT+GGG | + | chr1.1:7534947-7534966 | MS.gene33120:CDS | 35.0% | |
TGGAAACGTTAAGAAGATAG+GGG | + | chr1.1:7534366-7534385 | MS.gene33120:CDS | 35.0% | |
TGTACAAACTAATATTGCCG+TGG | - | chr1.1:7536372-7536391 | None:intergenic | 35.0% | |
TTATTAGCAACATGCATTCC+TGG | + | chr1.1:7534860-7534879 | MS.gene33120:CDS | 35.0% | |
TTGAAGTTTATGGAAGAAGG+TGG | + | chr1.1:7534946-7534965 | MS.gene33120:CDS | 35.0% | |
TTGTTACAGACTTACAGTCA+TGG | - | chr1.1:7535463-7535482 | None:intergenic | 35.0% | |
TTTACAGAGGAAGACATTGT+AGG | + | chr1.1:7537054-7537073 | MS.gene33120:intron | 35.0% | |
TTTGGTGAAAGGTTTCTGAT+CGG | + | chr1.1:7536813-7536832 | MS.gene33120:CDS | 35.0% | |
TTTGTTCAAACCCTAAGGTT+GGG | + | chr1.1:7536416-7536435 | MS.gene33120:CDS | 35.0% | |
! | AAAACGTACATGGATTTTCC+TGG | - | chr1.1:7536523-7536542 | None:intergenic | 35.0% |
! | ATTGAAGGCATACACTGTAA+GGG | - | chr1.1:7536080-7536099 | None:intergenic | 35.0% |
! | CTCAAGAATCAAGATTTGGT+AGG | - | chr1.1:7535762-7535781 | None:intergenic | 35.0% |
! | GACTCTAAAAGGACTATGTT+AGG | - | chr1.1:7535048-7535067 | None:intergenic | 35.0% |
! | TGGAATTTGTTCAAACCCTA+AGG | + | chr1.1:7536411-7536430 | MS.gene33120:CDS | 35.0% |
!! | AAATTGCATATGGGCATTGA+AGG | - | chr1.1:7536095-7536114 | None:intergenic | 35.0% |
!! | ATAAGCATTTGTTGTGCCAA+GGG | + | chr1.1:7536049-7536068 | MS.gene33120:intron | 35.0% |
!! | TTGAGTTTGCTGAAATTCTC+CGG | + | chr1.1:7536766-7536785 | MS.gene33120:CDS | 35.0% |
!!! | AACATAGTCCTTTTAGAGTC+CGG | + | chr1.1:7535048-7535067 | MS.gene33120:CDS | 35.0% |
!!! | ACCGTCTCTATGATTTTTTG+CGG | + | chr1.1:7535722-7535741 | MS.gene33120:intron | 35.0% |
AAACTAATATTGCCGTGGCT+TGG | - | chr1.1:7536367-7536386 | None:intergenic | 40.0% | |
AACCGGGTTTCGATAGTATA+TGG | - | chr1.1:7535082-7535101 | None:intergenic | 40.0% | |
AACTCAATGGTGGTTTAGAG+TGG | + | chr1.1:7536874-7536893 | MS.gene33120:CDS | 40.0% | |
ACCGGGTTTCGATAGTATAT+GGG | - | chr1.1:7535081-7535100 | None:intergenic | 40.0% | |
AGGAGAAACTTACTGTAGGA+TGG | + | chr1.1:7535331-7535350 | MS.gene33120:intron | 40.0% | |
AGTGTAGGAAATACATGCTC+CGG | - | chr1.1:7536220-7536239 | None:intergenic | 40.0% | |
ATAGTATATGGGAGAACTGC+CGG | - | chr1.1:7535070-7535089 | None:intergenic | 40.0% | |
ATGCTGAAGCCTAAACTCAA+TGG | + | chr1.1:7536861-7536880 | MS.gene33120:CDS | 40.0% | |
CAATATTGGTCCCAACCTTA+GGG | - | chr1.1:7536429-7536448 | None:intergenic | 40.0% | |
GATTAGGAGGATATTTCCCT+TGG | - | chr1.1:7534899-7534918 | None:intergenic | 40.0% | |
GCCGCAAAAAATCATAGAGA+CGG | - | chr1.1:7535726-7535745 | None:intergenic | 40.0% | |
GGGCTCCAAATTTCAAAATG+CGG | + | chr1.1:7536922-7536941 | MS.gene33120:CDS | 40.0% | |
GGTTTGAACAAATTCCAAGG+TGG | - | chr1.1:7536408-7536427 | None:intergenic | 40.0% | |
GTATTGCTGATGCTTTGCAA+TGG | + | chr1.1:7536299-7536318 | MS.gene33120:CDS | 40.0% | |
GTTTCCTTCTTCAAGAGAGA+AGG | - | chr1.1:7535388-7535407 | None:intergenic | 40.0% | |
TACTGTAGGATGGTATGGTA+TGG | + | chr1.1:7535341-7535360 | MS.gene33120:intron | 40.0% | |
TCAAACCCAAAGGAGAGATT+GGG | + | chr1.1:7536154-7536173 | MS.gene33120:CDS | 40.0% | |
TCAATATTGGTCCCAACCTT+AGG | - | chr1.1:7536430-7536449 | None:intergenic | 40.0% | |
TCAGAACTGCTGATGGAATA+CGG | + | chr1.1:7535003-7535022 | MS.gene33120:CDS | 40.0% | |
TCATAGCTTCTTAGCTGTGT+AGG | - | chr1.1:7534268-7534287 | None:intergenic | 40.0% | |
TCCCATATACTATCGAAACC+CGG | + | chr1.1:7535077-7535096 | MS.gene33120:CDS | 40.0% | |
TGATCGTGTATAATTGGTCC+TGG | + | chr1.1:7534518-7534537 | MS.gene33120:intron | 40.0% | |
TTGAGAGAGGTAGTAGAGTT+TGG | + | chr1.1:7535170-7535189 | MS.gene33120:intron | 40.0% | |
TTGCTCAACAATATTGGTGG+AGG | + | chr1.1:7536484-7536503 | MS.gene33120:CDS | 40.0% | |
! | AATGGTGGTTTAGAGTGGAT+GGG | + | chr1.1:7536879-7536898 | MS.gene33120:CDS | 40.0% |
! | CATTGAAGGCATACACTGTA+AGG | - | chr1.1:7536081-7536100 | None:intergenic | 40.0% |
! | CTTGTACTCGTACTGGTAAA+AGG | - | chr1.1:7535969-7535988 | None:intergenic | 40.0% |
! | CTTTTACCAGTACGAGTACA+AGG | + | chr1.1:7535967-7535986 | MS.gene33120:CDS | 40.0% |
! | GAATCAAGATTTGGTAGGAG+AGG | - | chr1.1:7535757-7535776 | None:intergenic | 40.0% |
! | TGGAATACGGACAAGTATTG+TGG | + | chr1.1:7535016-7535035 | MS.gene33120:CDS | 40.0% |
!! | GATAAGCATTTGTTGTGCCA+AGG | + | chr1.1:7536048-7536067 | MS.gene33120:intron | 40.0% |
AATCACTATCACCCGCGATT+AGG | - | chr1.1:7534915-7534934 | None:intergenic | 45.0% | |
ACAGGATGAGTCAAACCCAA+AGG | + | chr1.1:7536144-7536163 | MS.gene33120:intron | 45.0% | |
AGATAGGGGATGATGTTCGA+AGG | + | chr1.1:7534380-7534399 | MS.gene33120:CDS | 45.0% | |
ATCAGTGCTTCTCTTCGACT+AGG | + | chr1.1:7534304-7534323 | MS.gene33120:CDS | 45.0% | |
CAAACAATACTAACCTCCGC+CGG | - | chr1.1:7534446-7534465 | None:intergenic | 45.0% | |
CTGAAGCCTAAACTCAATGG+TGG | + | chr1.1:7536864-7536883 | MS.gene33120:CDS | 45.0% | |
GACCGGAAAAGATACAGCTT+GGG | - | chr1.1:7535673-7535692 | None:intergenic | 45.0% | |
GACTTGATTGATGCACCTTC+CGG | + | chr1.1:7534424-7534443 | MS.gene33120:CDS | 45.0% | |
GCTTCTTAGCTGTGTAGGAA+TGG | - | chr1.1:7534263-7534282 | None:intergenic | 45.0% | |
GGAAATATCCTCCTAATCGC+GGG | + | chr1.1:7534901-7534920 | MS.gene33120:CDS | 45.0% | |
GGGAAATATCCTCCTAATCG+CGG | + | chr1.1:7534900-7534919 | MS.gene33120:CDS | 45.0% | |
GGTAGACAAGATCGTGTTTC+AGG | - | chr1.1:7535838-7535857 | None:intergenic | 45.0% | |
GTATTCCATCAGCAGTTCTG+AGG | - | chr1.1:7535004-7535023 | None:intergenic | 45.0% | |
GTCAAACCCAAAGGAGAGAT+TGG | + | chr1.1:7536153-7536172 | MS.gene33120:CDS | 45.0% | |
GTTTAGGCTTCAGCATGACA+TGG | - | chr1.1:7536857-7536876 | None:intergenic | 45.0% | |
TATGGTATGGTATAGCCTGG+AGG | + | chr1.1:7535354-7535373 | MS.gene33120:intron | 45.0% | |
TGACCGGAAAAGATACAGCT+TGG | - | chr1.1:7535674-7535693 | None:intergenic | 45.0% | |
TGGAACTCGAGTACACTCAA+TGG | - | chr1.1:7536347-7536366 | None:intergenic | 45.0% | |
TGGTATGGTATGGTATAGCC+TGG | + | chr1.1:7535351-7535370 | MS.gene33120:intron | 45.0% | |
TGTGCCTTCTCTCTTGAAGA+AGG | + | chr1.1:7535381-7535400 | MS.gene33120:intron | 45.0% | |
TTCACAATGTAGCAACCCCT+TGG | - | chr1.1:7535798-7535817 | None:intergenic | 45.0% | |
! | ACGGACAAGTATTGTGGAAC+TGG | + | chr1.1:7535022-7535041 | MS.gene33120:CDS | 45.0% |
! | CAATGGTGGTTTAGAGTGGA+TGG | + | chr1.1:7536878-7536897 | MS.gene33120:CDS | 45.0% |
! | CGTACTGGTAAAAGGCTACA+AGG | - | chr1.1:7535961-7535980 | None:intergenic | 45.0% |
! | GACCCAAGCTGTATCTTTTC+CGG | + | chr1.1:7535668-7535687 | MS.gene33120:intron | 45.0% |
!! | AGTTTGCTGAAATTCTCCGG+AGG | + | chr1.1:7536769-7536788 | MS.gene33120:CDS | 45.0% |
AGTGCTTCTCTTCGACTAGG+CGG | + | chr1.1:7534307-7534326 | MS.gene33120:CDS | 50.0% | |
ATGGGACCCAATCTCTCCTT+TGG | - | chr1.1:7536163-7536182 | None:intergenic | 50.0% | |
CACTGTAAGGGTTTGACCCT+TGG | - | chr1.1:7536068-7536087 | None:intergenic | 50.0% | |
CGAAGGCAATTCAAAGCTGC+AGG | + | chr1.1:7534397-7534416 | MS.gene33120:CDS | 50.0% | |
CGCAAACCTTGTACTCGTAC+TGG | - | chr1.1:7535976-7535995 | None:intergenic | 50.0% | |
CTAGGCGGTATAGGAGTAGA+AGG | + | chr1.1:7534322-7534341 | MS.gene33120:CDS | 50.0% | |
CTCGTGCTGAACTCAATTCC+AGG | + | chr1.1:7536266-7536285 | MS.gene33120:CDS | 50.0% | |
GAGAACTGCCGGACTCTAAA+AGG | - | chr1.1:7535059-7535078 | None:intergenic | 50.0% | |
GGAGGAAATCGATTAGAGCC+AGG | + | chr1.1:7536502-7536521 | MS.gene33120:CDS | 50.0% | |
GGCATAAAGTCATGATCGCC+GGG | + | chr1.1:7534968-7534987 | MS.gene33120:CDS | 50.0% | |
GGGCATAAAGTCATGATCGC+CGG | + | chr1.1:7534967-7534986 | MS.gene33120:CDS | 50.0% | |
TAACCGTCGTGCTGAGGAAT+GGG | + | chr1.1:7536902-7536921 | MS.gene33120:CDS | 50.0% | |
TCTCTTCGACTAGGCGGTAT+AGG | + | chr1.1:7534313-7534332 | MS.gene33120:CDS | 50.0% | |
TGGGACCCAATCTCTCCTTT+GGG | - | chr1.1:7536162-7536181 | None:intergenic | 50.0% | |
TGGTCGCGTGAAAATCCCAA+GGG | + | chr1.1:7534880-7534899 | MS.gene33120:CDS | 50.0% | |
TGTACTCGAGTTCCAAGCCA+CGG | + | chr1.1:7536352-7536371 | MS.gene33120:CDS | 50.0% | |
TTGATTGATGCACCTTCCGG+CGG | + | chr1.1:7534427-7534446 | MS.gene33120:CDS | 50.0% | |
! | AGATTAGCTGACAGCCACCT+TGG | + | chr1.1:7536391-7536410 | MS.gene33120:CDS | 50.0% |
!! | GGACTCACTGTGAGAGCATT+TGG | + | chr1.1:7534346-7534365 | MS.gene33120:CDS | 50.0% |
!! | TGAGGCGAGCCTTGTTGAAA+TGG | - | chr1.1:7535492-7535511 | None:intergenic | 50.0% |
AAGTCATGATCGCCGGGAAG+TGG | + | chr1.1:7534974-7534993 | MS.gene33120:CDS | 55.0% | |
AGTCATGATCGCCGGGAAGT+GGG | + | chr1.1:7534975-7534994 | MS.gene33120:CDS | 55.0% | |
CAATACTAACCTCCGCCGGA+AGG | - | chr1.1:7534442-7534461 | None:intergenic | 55.0% | |
CACTATCACCCGCGATTAGG+AGG | - | chr1.1:7534912-7534931 | None:intergenic | 55.0% | |
CTCGACATCCCAGAATACGC+CGG | - | chr1.1:7534233-7534252 | None:intergenic | 55.0% | |
CTGGTCGCGTGAAAATCCCA+AGG | + | chr1.1:7534879-7534898 | MS.gene33120:CDS | 55.0% | |
GGATGCCTCAGAACTGCTGA+TGG | + | chr1.1:7534996-7535015 | MS.gene33120:CDS | 55.0% | |
GGCGGTATAGGAGTAGAAGG+TGG | + | chr1.1:7534325-7534344 | MS.gene33120:CDS | 55.0% | |
GTAACCGTCGTGCTGAGGAA+TGG | + | chr1.1:7536901-7536920 | MS.gene33120:CDS | 55.0% | |
! | CTTGGGATTTTCACGCGACC+AGG | - | chr1.1:7534881-7534900 | None:intergenic | 55.0% |
!! | TTCTGAGGCATCCCACTTCC+CGG | - | chr1.1:7534989-7535008 | None:intergenic | 55.0% |
AGCTACACGAGCTCGCCAAG+GGG | + | chr1.1:7535780-7535799 | MS.gene33120:intron | 60.0% | |
ATTGATGCACCTTCCGGCGG+AGG | + | chr1.1:7534430-7534449 | MS.gene33120:CDS | 60.0% | |
GACATCCCAGAATACGCCGG+TGG | - | chr1.1:7534230-7534249 | None:intergenic | 60.0% | |
GAGCCCATTCCTCAGCACGA+CGG | - | chr1.1:7536908-7536927 | None:intergenic | 60.0% | |
GAGCTACACGAGCTCGCCAA+GGG | + | chr1.1:7535779-7535798 | MS.gene33120:intron | 60.0% | |
GATGGGTAACCGTCGTGCTG+AGG | + | chr1.1:7536896-7536915 | MS.gene33120:CDS | 60.0% | |
GGTGTCCACCGGCGTATTCT+GGG | + | chr1.1:7534222-7534241 | MS.gene33120:CDS | 60.0% | |
TGAGCTACACGAGCTCGCCA+AGG | + | chr1.1:7535778-7535797 | MS.gene33120:intron | 60.0% | |
TGGTGTCCACCGGCGTATTC+TGG | + | chr1.1:7534221-7534240 | MS.gene33120:CDS | 60.0% | |
! | GAGAAGGCACAGACACCTCC+AGG | - | chr1.1:7535372-7535391 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 7534220 | 7537095 | 7534220 | ID=MS.gene33120 |
chr1.1 | mRNA | 7534220 | 7537095 | 7534220 | ID=MS.gene33120.t1;Parent=MS.gene33120 |
chr1.1 | exon | 7534220 | 7534451 | 7534220 | ID=MS.gene33120.t1.exon1;Parent=MS.gene33120.t1 |
chr1.1 | CDS | 7534220 | 7534451 | 7534220 | ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1 |
chr1.1 | exon | 7534830 | 7535098 | 7534830 | ID=MS.gene33120.t1.exon2;Parent=MS.gene33120.t1 |
chr1.1 | CDS | 7534830 | 7535098 | 7534830 | ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1 |
chr1.1 | exon | 7535966 | 7536028 | 7535966 | ID=MS.gene33120.t1.exon3;Parent=MS.gene33120.t1 |
chr1.1 | CDS | 7535966 | 7536028 | 7535966 | ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1 |
chr1.1 | exon | 7536148 | 7536533 | 7536148 | ID=MS.gene33120.t1.exon4;Parent=MS.gene33120.t1 |
chr1.1 | CDS | 7536148 | 7536533 | 7536148 | ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1 |
chr1.1 | exon | 7536764 | 7536963 | 7536764 | ID=MS.gene33120.t1.exon5;Parent=MS.gene33120.t1 |
chr1.1 | CDS | 7536764 | 7536963 | 7536764 | ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1 |
chr1.1 | exon | 7537061 | 7537095 | 7537061 | ID=MS.gene33120.t1.exon6;Parent=MS.gene33120.t1 |
chr1.1 | CDS | 7537061 | 7537095 | 7537061 | ID=cds.MS.gene33120.t1;Parent=MS.gene33120.t1 |
Gene Sequence |
Protein sequence |