Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33324.t1 | PNY17631.1 | 81.1 | 370 | 54 | 2 | 1 | 354 | 1 | 370 | 2.90E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33324.t1 | Q84VY3 | 63.8 | 351 | 108 | 3 | 23 | 354 | 40 | 390 | 9.1e-126 | 451.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33324.t1 | A0A2K3PQT1 | 81.1 | 370 | 54 | 2 | 1 | 354 | 1 | 370 | 2.1e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050563 | MS.gene33324 | 0.826271 | 2.97E-54 | -1.69E-46 |
| MS.gene050584 | MS.gene33324 | 0.819498 | 1.13E-52 | -1.69E-46 |
| MS.gene050585 | MS.gene33324 | 0.802293 | 6.01E-49 | -1.69E-46 |
| MS.gene050587 | MS.gene33324 | 0.833856 | 4.19E-56 | -1.69E-46 |
| MS.gene051789 | MS.gene33324 | 0.806007 | 1.01E-49 | -1.69E-46 |
| MS.gene052142 | MS.gene33324 | 0.804667 | 1.94E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene33324 | 0.833075 | 6.57E-56 | -1.69E-46 |
| MS.gene05456 | MS.gene33324 | 0.855175 | 7.53E-62 | -1.69E-46 |
| MS.gene055359 | MS.gene33324 | 0.80717 | 5.76E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene33324 | 0.815194 | 1.05E-51 | -1.69E-46 |
| MS.gene059768 | MS.gene33324 | 0.812851 | 3.44E-51 | -1.69E-46 |
| MS.gene060691 | MS.gene33324 | 0.824775 | 6.72E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33324.t1 | MTR_3g090010 | 80.270 | 370 | 58 | 2 | 1 | 355 | 1 | 370 | 0.0 | 615 |
| MS.gene33324.t1 | MTR_3g090100 | 69.210 | 367 | 95 | 2 | 2 | 354 | 3 | 365 | 0.0 | 531 |
| MS.gene33324.t1 | MTR_3g090020 | 68.937 | 367 | 96 | 2 | 2 | 354 | 3 | 365 | 0.0 | 523 |
| MS.gene33324.t1 | MTR_3g089025 | 66.576 | 368 | 109 | 1 | 1 | 354 | 1 | 368 | 0.0 | 509 |
| MS.gene33324.t1 | MTR_1g029150 | 67.590 | 361 | 93 | 3 | 17 | 353 | 28 | 388 | 1.09e-177 | 498 |
| MS.gene33324.t1 | MTR_5g024130 | 60.237 | 337 | 117 | 3 | 32 | 353 | 57 | 391 | 2.40e-146 | 419 |
| MS.gene33324.t1 | MTR_4g087440 | 60.237 | 337 | 117 | 3 | 32 | 353 | 57 | 391 | 2.83e-146 | 419 |
| MS.gene33324.t1 | MTR_3g090110 | 61.017 | 118 | 23 | 1 | 199 | 316 | 1 | 95 | 1.64e-41 | 141 |
| MS.gene33324.t1 | MTR_3g089980 | 68.367 | 98 | 18 | 1 | 219 | 316 | 6 | 90 | 3.93e-36 | 126 |
| MS.gene33324.t1 | MTR_3g089973 | 46.622 | 148 | 35 | 2 | 199 | 346 | 1 | 104 | 1.54e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33324.t1 | AT1G43800 | 63.456 | 353 | 110 | 3 | 21 | 354 | 38 | 390 | 9.62e-165 | 466 |
| MS.gene33324.t1 | AT3G02630 | 58.284 | 338 | 123 | 3 | 32 | 353 | 59 | 394 | 1.52e-140 | 404 |
| MS.gene33324.t1 | AT2G43710 | 58.160 | 337 | 124 | 3 | 32 | 353 | 65 | 399 | 1.57e-139 | 402 |
| MS.gene33324.t1 | AT3G02610 | 57.925 | 347 | 125 | 5 | 27 | 353 | 64 | 409 | 1.62e-139 | 402 |
| MS.gene33324.t1 | AT3G02610 | 57.925 | 347 | 125 | 5 | 27 | 353 | 66 | 411 | 1.68e-139 | 402 |
| MS.gene33324.t1 | AT2G43710 | 58.160 | 337 | 124 | 3 | 32 | 353 | 65 | 399 | 1.76e-139 | 402 |
| MS.gene33324.t1 | AT3G02620 | 53.684 | 380 | 148 | 7 | 1 | 353 | 23 | 401 | 1.76e-138 | 399 |
| MS.gene33324.t1 | AT3G02620 | 53.684 | 380 | 148 | 7 | 1 | 353 | 26 | 404 | 2.19e-138 | 399 |
| MS.gene33324.t1 | AT5G16230 | 54.645 | 366 | 146 | 6 | 6 | 353 | 36 | 399 | 3.26e-137 | 396 |
| MS.gene33324.t1 | AT5G16240 | 54.247 | 365 | 138 | 5 | 6 | 353 | 40 | 392 | 2.21e-136 | 394 |
| MS.gene33324.t1 | AT3G02620 | 57.669 | 326 | 117 | 5 | 48 | 353 | 1 | 325 | 1.52e-131 | 379 |
| MS.gene33324.t1 | AT5G16230 | 57.407 | 324 | 119 | 5 | 48 | 353 | 1 | 323 | 4.83e-131 | 377 |
Find 91 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGATCAAGTGAAGGCATTA+AGG | 0.300188 | 3.3:+75744656 | MS.gene33324:CDS |
| CTCTTGCAGCCTCCTAATCT+TGG | 0.308277 | 3.3:-75746214 | None:intergenic |
| AAAACATATCTCTATCTTTC+GGG | 0.321851 | 3.3:+75744878 | MS.gene33324:CDS |
| ATGGCAATGTGCACTCAATT+AGG | 0.331509 | 3.3:+75744412 | MS.gene33324:CDS |
| GAGACATTGAGTATGTCTTT+TGG | 0.340015 | 3.3:-75744498 | None:intergenic |
| GGGTCGGGTTGATATGTTCA+TGG | 0.349549 | 3.3:+75744898 | MS.gene33324:CDS |
| CAAAACATATCTCTATCTTT+CGG | 0.357765 | 3.3:+75744877 | MS.gene33324:CDS |
| CTTGATTGGACGTTGGAGAT+TGG | 0.360703 | 3.3:+75746128 | MS.gene33324:CDS |
| GATAGCTTGGAGTTCTTGAT+TGG | 0.365666 | 3.3:+75746114 | MS.gene33324:CDS |
| CCAACATTCCTCCACTGGTT+TGG | 0.368196 | 3.3:-75744584 | None:intergenic |
| TTGCTTATGGTGTAGGATAT+AGG | 0.368907 | 3.3:+75745736 | MS.gene33324:intron |
| ACCATCATGCATCAAGTGTC+CGG | 0.383908 | 3.3:-75746016 | None:intergenic |
| AGTGTCCGGGCATTGTTATA+TGG | 0.388397 | 3.3:-75746002 | None:intergenic |
| GGGCTGTATGGACACGCTCT+TGG | 0.392310 | 3.3:+75744822 | MS.gene33324:CDS |
| CGATCAAGTGAAGGCATTAA+GGG | 0.400225 | 3.3:+75744657 | MS.gene33324:CDS |
| TTTCAAGTCATTAGAGAGTT+GGG | 0.400750 | 3.3:+75744537 | MS.gene33324:CDS |
| ACAGAAAAGTGGCTCGCTCT+TGG | 0.405583 | 3.3:-75745801 | None:intergenic |
| AGATGAAACCTAAGTTTAGT+TGG | 0.414064 | 3.3:+75746259 | MS.gene33324:CDS |
| TTTGGGACGGGGCCTTTAGA+TGG | 0.414164 | 3.3:-75744462 | None:intergenic |
| ATCGCTGTCATCGTCTCTGT+GGG | 0.438188 | 3.3:-75745961 | None:intergenic |
| GTGGGCTTGCACCCAAGATT+AGG | 0.440604 | 3.3:+75746202 | MS.gene33324:CDS |
| GCACCAATCCATGGGCTGTA+TGG | 0.441370 | 3.3:+75744810 | MS.gene33324:CDS |
| CTTGGACGGCTGAGGAGAAT+AGG | 0.445934 | 3.3:+75744840 | MS.gene33324:CDS |
| TCGAAGACCCAACTAAACTT+AGG | 0.447054 | 3.3:-75746267 | None:intergenic |
| AAAACTACAAAATAATCGTT+TGG | 0.448525 | 3.3:-75744697 | None:intergenic |
| GATGAAACCTAAGTTTAGTT+GGG | 0.451996 | 3.3:+75746260 | MS.gene33324:CDS |
| ATATCTCTATCTTTCGGGTC+GGG | 0.456137 | 3.3:+75744883 | MS.gene33324:CDS |
| TCCTCCACTGGTTTGGCTAG+TGG | 0.461572 | 3.3:-75744577 | None:intergenic |
| GGCTGCCAACATTCCTCCAC+TGG | 0.466668 | 3.3:-75744589 | None:intergenic |
| CTGCAGAGAAATGACTGAAT+AGG | 0.475282 | 3.3:-75746050 | None:intergenic |
| TCTTGCAGCCTCCTAATCTT+GGG | 0.478217 | 3.3:-75746213 | None:intergenic |
| GCATAAGCAAAAGCCTTGTA+TGG | 0.479543 | 3.3:-75745772 | None:intergenic |
| TCTGCAGTGGCACAACGTAT+TGG | 0.480986 | 3.3:+75746066 | MS.gene33324:CDS |
| ATCCAATACTTAATTAGAGC+TGG | 0.502293 | 3.3:+75744932 | MS.gene33324:CDS |
| ATGGTGTAGGATATAGGAAC+AGG | 0.502877 | 3.3:+75745742 | MS.gene33324:intron |
| TGCCAGCTCTAATTAAGTAT+TGG | 0.509971 | 3.3:-75744934 | None:intergenic |
| CATATCTCTATCTTTCGGGT+CGG | 0.512882 | 3.3:+75744882 | MS.gene33324:CDS |
| TACGTTGGCAATGCTTCCCT+CGG | 0.514449 | 3.3:-75744737 | None:intergenic |
| CTGGTTCAAGCACCAATCCA+TGG | 0.522757 | 3.3:+75744801 | MS.gene33324:CDS |
| CCAAACCAGTGGAGGAATGT+TGG | 0.526760 | 3.3:+75744584 | MS.gene33324:CDS |
| CAGCATGGCTCGACTCGCTA+AGG | 0.531189 | 3.3:+75745831 | MS.gene33324:CDS |
| AATATATCAAGCAATGATGA+TGG | 0.536988 | 3.3:+75744393 | None:intergenic |
| CCATCATGCATCAAGTGTCC+GGG | 0.545387 | 3.3:-75746015 | None:intergenic |
| TCCGACGGTAGTGAAGAGTC+TGG | 0.546524 | 3.3:-75744625 | None:intergenic |
| TGTATGGACACGCTCTTGGA+CGG | 0.555722 | 3.3:+75744826 | MS.gene33324:CDS |
| TCTACCACAATGCCATCTAA+AGG | 0.559658 | 3.3:+75744450 | MS.gene33324:CDS |
| AAAAGTGGCTCGCTCTTGGA+AGG | 0.559887 | 3.3:-75745797 | None:intergenic |
| ATACTTAATTAGAGCTGGCA+TGG | 0.560206 | 3.3:+75744937 | MS.gene33324:CDS |
| CTCAATTAGGACCACGTGCG+TGG | 0.562488 | 3.3:+75744425 | MS.gene33324:CDS |
| AGTAACCATATAACAATGCC+CGG | 0.565594 | 3.3:+75745997 | MS.gene33324:CDS |
| GAGCGTGTCCATACAGCCCA+TGG | 0.565706 | 3.3:-75744818 | None:intergenic |
| TAGTGACTACATCGATAGCT+TGG | 0.572127 | 3.3:+75746101 | MS.gene33324:CDS |
| TATCGCTGTCATCGTCTCTG+TGG | 0.572162 | 3.3:-75745962 | None:intergenic |
| CCAACGCTTGCATGTATATG+TGG | 0.573043 | 3.3:+75745865 | MS.gene33324:CDS |
| TGTCCATACAGCCCATGGAT+TGG | 0.576962 | 3.3:-75744813 | None:intergenic |
| CCACATATACATGCAAGCGT+TGG | 0.581994 | 3.3:-75745865 | None:intergenic |
| TGGTTCAAGCACCAATCCAT+GGG | 0.582779 | 3.3:+75744802 | MS.gene33324:CDS |
| GACACGCTCTTGGACGGCTG+AGG | 0.585462 | 3.3:+75744832 | MS.gene33324:CDS |
| ATTCAGTCATTTCTCTGCAG+TGG | 0.588279 | 3.3:+75746053 | MS.gene33324:CDS |
| GGCTTGCACCCAAGATTAGG+AGG | 0.589066 | 3.3:+75746205 | MS.gene33324:CDS |
| AACAGGAAGTAATCCATACA+AGG | 0.590466 | 3.3:+75745759 | MS.gene33324:CDS |
| GCCAGACTCTTCACTACCGT+CGG | 0.590866 | 3.3:+75744624 | MS.gene33324:CDS |
| TGGAGTTCTTGATTGGACGT+TGG | 0.591629 | 3.3:+75746121 | MS.gene33324:CDS |
| CCCGGACACTTGATGCATGA+TGG | 0.596093 | 3.3:+75746015 | MS.gene33324:CDS |
| GCCACTAGCCAAACCAGTGG+AGG | 0.597505 | 3.3:+75744576 | MS.gene33324:CDS |
| ACAACGTATTGGTGTGTACA+CGG | 0.599250 | 3.3:+75746077 | MS.gene33324:CDS |
| GCTGCCGTCTGACAGAAAAG+TGG | 0.600013 | 3.3:-75745812 | None:intergenic |
| GATCATTGCAAAACTTCTAG+AGG | 0.605970 | 3.3:+75745933 | MS.gene33324:CDS |
| GCTAGAGGGTTTGACAAGCG+AGG | 0.609085 | 3.3:+75746155 | MS.gene33324:CDS |
| TGGAGATTGGAGAAGCTAGA+GGG | 0.609211 | 3.3:+75746141 | MS.gene33324:CDS |
| GAAGGCATTAAGGGATCGAA+CGG | 0.611309 | 3.3:+75744666 | MS.gene33324:CDS |
| AGAAATGACTGAATAGGTGT+GGG | 0.611780 | 3.3:-75746044 | None:intergenic |
| TTGGAGATTGGAGAAGCTAG+AGG | 0.613405 | 3.3:+75746140 | MS.gene33324:CDS |
| CGTGCACAAGAGATCGTGTG+TGG | 0.620067 | 3.3:+75746183 | MS.gene33324:CDS |
| ACGGCTGAGGAGAATAGGCA+TGG | 0.622537 | 3.3:+75744845 | MS.gene33324:CDS |
| CATTGCAAAACTTCTAGAGG+TGG | 0.625212 | 3.3:+75745936 | MS.gene33324:CDS |
| CTAGAGGGTTTGACAAGCGA+GGG | 0.626748 | 3.3:+75746156 | MS.gene33324:CDS |
| GCTCGACTCGCTAAGGAGAG+AGG | 0.626899 | 3.3:+75745838 | MS.gene33324:CDS |
| TGAGTTCATCGATCAAGTGA+AGG | 0.637744 | 3.3:+75744648 | MS.gene33324:CDS |
| GCCACGAGATTGCATATGAG+AGG | 0.641136 | 3.3:+75745911 | MS.gene33324:CDS |
| GTGGGTGACATGATCACCGA+GGG | 0.642125 | 3.3:+75744721 | MS.gene33324:CDS |
| GAGAAATGACTGAATAGGTG+TGG | 0.645655 | 3.3:-75746045 | None:intergenic |
| TCCTCTCATATGCAATCTCG+TGG | 0.655385 | 3.3:-75745912 | None:intergenic |
| GGGGCCTTTAGATGGCATTG+TGG | 0.664695 | 3.3:-75744454 | None:intergenic |
| GTGCACAAGAGATCGTGTGT+GGG | 0.665993 | 3.3:+75746184 | MS.gene33324:CDS |
| TGTGGTAGAATCCACGCACG+TGG | 0.679284 | 3.3:-75744436 | None:intergenic |
| TCGCTGTCATCGTCTCTGTG+GGG | 0.704169 | 3.3:-75745960 | None:intergenic |
| TGATCGATGAACTCATCCGA+CGG | 0.705040 | 3.3:-75744640 | None:intergenic |
| GCTGCCACTAGCCAAACCAG+TGG | 0.706140 | 3.3:+75744573 | MS.gene33324:CDS |
| GAGTCTGGCAACAAATCATG+TGG | 0.719794 | 3.3:-75744610 | None:intergenic |
| AGTGGGTGACATGATCACCG+AGG | 0.756543 | 3.3:+75744720 | MS.gene33324:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATCATAAATGAAATAA+CGG | - | chr3.3:75745376-75745395 | None:intergenic | 15.0% |
| !! | TAAAATTAATTGATTGCTTA+TGG | + | chr3.3:75745723-75745742 | MS.gene33324:intron | 15.0% |
| !! | TATTTCATTTATGATTAAGA+TGG | + | chr3.3:75745377-75745396 | MS.gene33324:intron | 15.0% |
| !!! | AGTCTAAAATAATTGTTATA+TGG | + | chr3.3:75745418-75745437 | MS.gene33324:intron | 15.0% |
| !!! | ATGATATTTTTTATACACAT+CGG | - | chr3.3:75745098-75745117 | None:intergenic | 15.0% |
| !! | AAAACTACAAAATAATCGTT+TGG | - | chr3.3:75744700-75744719 | None:intergenic | 20.0% |
| !! | AAAAGTGGAAGAAATATTAT+AGG | + | chr3.3:75745323-75745342 | MS.gene33324:intron | 20.0% |
| !! | ATTACCAAAAAAATTGTATG+TGG | - | chr3.3:75745516-75745535 | None:intergenic | 20.0% |
| !! | TTACCAAAAAAATTGTATGT+GGG | - | chr3.3:75745515-75745534 | None:intergenic | 20.0% |
| !!! | ATATCTTTCCATATTCATTT+TGG | + | chr3.3:75745257-75745276 | MS.gene33324:intron | 20.0% |
| !!! | CTTGAAAATTTCTTTCTTTT+CGG | - | chr3.3:75744524-75744543 | None:intergenic | 20.0% |
| !!! | GATTATTTTGTAGTTTTAGT+GGG | + | chr3.3:75744703-75744722 | MS.gene33324:CDS | 20.0% |
| !!! | TATCTTTCCATATTCATTTT+GGG | + | chr3.3:75745258-75745277 | MS.gene33324:intron | 20.0% |
| !!! | TGGTAAAGATTTAAAAGTAT+GGG | - | chr3.3:75745285-75745304 | None:intergenic | 20.0% |
| !!! | TTGAAAATTTCTTTCTTTTC+GGG | - | chr3.3:75744523-75744542 | None:intergenic | 20.0% |
| ! | AAAACATATCTCTATCTTTC+GGG | + | chr3.3:75744878-75744897 | MS.gene33324:CDS | 25.0% |
| ! | AATTTGTGTGGATCAATTTA+CGG | + | chr3.3:75745141-75745160 | MS.gene33324:intron | 25.0% |
| ! | ATCATCCATGTAAAAAAAAC+AGG | - | chr3.3:75745683-75745702 | None:intergenic | 25.0% |
| ! | ATTCTTACTTTGTTCCTTAA+AGG | + | chr3.3:75745596-75745615 | MS.gene33324:intron | 25.0% |
| ! | CAAAACATATCTCTATCTTT+CGG | + | chr3.3:75744877-75744896 | MS.gene33324:CDS | 25.0% |
| ! | CTGGTAAAGATTTAAAAGTA+TGG | - | chr3.3:75745286-75745305 | None:intergenic | 25.0% |
| ! | TAAAAAAAACAGGGTAATGT+AGG | - | chr3.3:75745673-75745692 | None:intergenic | 25.0% |
| ! | TACCAAAAAAATTGTATGTG+GGG | - | chr3.3:75745514-75745533 | None:intergenic | 25.0% |
| ! | TCATCCATGTAAAAAAAACA+GGG | - | chr3.3:75745682-75745701 | None:intergenic | 25.0% |
| ! | TTCTTACTTTGTTCCTTAAA+GGG | + | chr3.3:75745597-75745616 | MS.gene33324:intron | 25.0% |
| !! | TTTAAAATCAGGAAGATATC+TGG | - | chr3.3:75745305-75745324 | None:intergenic | 25.0% |
| !!! | ACAATTTTTTTGGTAATGCT+TGG | + | chr3.3:75745519-75745538 | MS.gene33324:intron | 25.0% |
| !!! | ATCTTCCTGATTTTAAAAAG+TGG | + | chr3.3:75745308-75745327 | MS.gene33324:intron | 25.0% |
| !!! | ATTACCCTGTTTTTTTTACA+TGG | + | chr3.3:75745675-75745694 | MS.gene33324:intron | 25.0% |
| !!! | CGATTATTTTGTAGTTTTAG+TGG | + | chr3.3:75744702-75744721 | MS.gene33324:CDS | 25.0% |
| !!! | TTCTTCCACTTTTTAAAATC+AGG | - | chr3.3:75745316-75745335 | None:intergenic | 25.0% |
| AGATGAAACCTAAGTTTAGT+TGG | + | chr3.3:75746259-75746278 | MS.gene33324:CDS | 30.0% | |
| ATCCAATACTTAATTAGAGC+TGG | + | chr3.3:75744932-75744951 | MS.gene33324:CDS | 30.0% | |
| CATTCAAATGTGAATTTGTG+TGG | + | chr3.3:75745129-75745148 | MS.gene33324:intron | 30.0% | |
| GATGAAACCTAAGTTTAGTT+GGG | + | chr3.3:75746260-75746279 | MS.gene33324:CDS | 30.0% | |
| TAATTGATTGCTTATGGTGT+AGG | + | chr3.3:75745729-75745748 | MS.gene33324:intron | 30.0% | |
| ! | AGACATTGAGTATGTCTTTT+GGG | - | chr3.3:75744500-75744519 | None:intergenic | 30.0% |
| ! | TAGACTTTTACAAAGAGAGA+GGG | - | chr3.3:75745404-75745423 | None:intergenic | 30.0% |
| ! | TTAGACTTTTACAAAGAGAG+AGG | - | chr3.3:75745405-75745424 | None:intergenic | 30.0% |
| ! | TTTCAAGTCATTAGAGAGTT+GGG | + | chr3.3:75744537-75744556 | MS.gene33324:CDS | 30.0% |
| !! | TCCATCCATATGATTTTGAT+CGG | - | chr3.3:75745636-75745655 | None:intergenic | 30.0% |
| !!! | AGTATGTCTTTTGGGATTTT+AGG | - | chr3.3:75744492-75744511 | None:intergenic | 30.0% |
| !!! | TTCCCCACATACAATTTTTT+TGG | + | chr3.3:75745509-75745528 | MS.gene33324:intron | 30.0% |
| !!! | TTGGGATTTTAGGACTTTTT+GGG | - | chr3.3:75744482-75744501 | None:intergenic | 30.0% |
| !!! | TTTGGGATTTTAGGACTTTT+TGG | - | chr3.3:75744483-75744502 | None:intergenic | 30.0% |
| !!! | TTTTCAAGTCATTAGAGAGT+TGG | + | chr3.3:75744536-75744555 | MS.gene33324:CDS | 30.0% |
| AACAGGAAGTAATCCATACA+AGG | + | chr3.3:75745759-75745778 | MS.gene33324:CDS | 35.0% | |
| AGAAATGACTGAATAGGTGT+GGG | - | chr3.3:75746047-75746066 | None:intergenic | 35.0% | |
| AGTAACCATATAACAATGCC+CGG | + | chr3.3:75745997-75746016 | MS.gene33324:CDS | 35.0% | |
| ATACTTAATTAGAGCTGGCA+TGG | + | chr3.3:75744937-75744956 | MS.gene33324:CDS | 35.0% | |
| ATCCATTCTACACATTGGAT+CGG | + | chr3.3:75745554-75745573 | MS.gene33324:intron | 35.0% | |
| ATGTGTAGAATGGATGAATG+TGG | - | chr3.3:75745549-75745568 | None:intergenic | 35.0% | |
| CATGCAAATACTCACATAAG+AGG | - | chr3.3:75745216-75745235 | None:intergenic | 35.0% | |
| CATTCATCCATTCTACACAT+TGG | + | chr3.3:75745549-75745568 | MS.gene33324:intron | 35.0% | |
| GATCATTGCAAAACTTCTAG+AGG | + | chr3.3:75745933-75745952 | MS.gene33324:CDS | 35.0% | |
| TATGGGACCCAAAATGAATA+TGG | - | chr3.3:75745268-75745287 | None:intergenic | 35.0% | |
| TTAAACCATGATTGGTACGT+TGG | - | chr3.3:75744755-75744774 | None:intergenic | 35.0% | |
| TTGCTTATGGTGTAGGATAT+AGG | + | chr3.3:75745736-75745755 | MS.gene33324:intron | 35.0% | |
| ! | AGACTTTTACAAAGAGAGAG+GGG | - | chr3.3:75745403-75745422 | None:intergenic | 35.0% |
| ! | GAGACATTGAGTATGTCTTT+TGG | - | chr3.3:75744501-75744520 | None:intergenic | 35.0% |
| ! | TGCCAGCTCTAATTAAGTAT+TGG | - | chr3.3:75744937-75744956 | None:intergenic | 35.0% |
| !! | CCATCCATATGATTTTGATC+GGG | - | chr3.3:75745635-75745654 | None:intergenic | 35.0% |
| !!! | ATTTTAGGACTTTTTGGGAC+GGG | - | chr3.3:75744477-75744496 | None:intergenic | 35.0% |
| !!! | GATTTTAGGACTTTTTGGGA+CGG | - | chr3.3:75744478-75744497 | None:intergenic | 35.0% |
| AAACAGGGTAATGTAGGTGA+TGG | - | chr3.3:75745667-75745686 | None:intergenic | 40.0% | |
| ATGGCAATGTGCACTCAATT+AGG | + | chr3.3:75744412-75744431 | MS.gene33324:CDS | 40.0% | |
| ATGGTGTAGGATATAGGAAC+AGG | + | chr3.3:75745742-75745761 | MS.gene33324:intron | 40.0% | |
| ATGGTTTAACAGACTGGATG+GGG | + | chr3.3:75744766-75744785 | MS.gene33324:intron | 40.0% | |
| ATTCAGTCATTTCTCTGCAG+TGG | + | chr3.3:75746053-75746072 | MS.gene33324:CDS | 40.0% | |
| CATGGTTTAACAGACTGGAT+GGG | + | chr3.3:75744765-75744784 | MS.gene33324:intron | 40.0% | |
| CCAATCATGGTTTAACAGAC+TGG | + | chr3.3:75744760-75744779 | MS.gene33324:intron | 40.0% | |
| CCAGTCTGTTAAACCATGAT+TGG | - | chr3.3:75744763-75744782 | None:intergenic | 40.0% | |
| CCCGATCAAAATCATATGGA+TGG | + | chr3.3:75745632-75745651 | MS.gene33324:intron | 40.0% | |
| CTGCAGAGAAATGACTGAAT+AGG | - | chr3.3:75746053-75746072 | None:intergenic | 40.0% | |
| GAGAAATGACTGAATAGGTG+TGG | - | chr3.3:75746048-75746067 | None:intergenic | 40.0% | |
| GATAGCTTGGAGTTCTTGAT+TGG | + | chr3.3:75746114-75746133 | MS.gene33324:CDS | 40.0% | |
| TAGTGACTACATCGATAGCT+TGG | + | chr3.3:75746101-75746120 | MS.gene33324:CDS | 40.0% | |
| TCATGGTTTAACAGACTGGA+TGG | + | chr3.3:75744764-75744783 | MS.gene33324:intron | 40.0% | |
| TCGAAGACCCAACTAAACTT+AGG | - | chr3.3:75746270-75746289 | None:intergenic | 40.0% | |
| TCTACCACAATGCCATCTAA+AGG | + | chr3.3:75744450-75744469 | MS.gene33324:CDS | 40.0% | |
| TGAGTTCATCGATCAAGTGA+AGG | + | chr3.3:75744648-75744667 | MS.gene33324:CDS | 40.0% | |
| ! | ACAACGTATTGGTGTGTACA+CGG | + | chr3.3:75746077-75746096 | MS.gene33324:CDS | 40.0% |
| ! | ATATCTCTATCTTTCGGGTC+GGG | + | chr3.3:75744883-75744902 | MS.gene33324:CDS | 40.0% |
| ! | CATATCTCTATCTTTCGGGT+CGG | + | chr3.3:75744882-75744901 | MS.gene33324:CDS | 40.0% |
| ! | CATTGCAAAACTTCTAGAGG+TGG | + | chr3.3:75745936-75745955 | MS.gene33324:CDS | 40.0% |
| ! | GCATAAGCAAAAGCCTTGTA+TGG | - | chr3.3:75745775-75745794 | None:intergenic | 40.0% |
| ! | TCCTTAAAGGGTGTGAATGT+GGG | + | chr3.3:75745609-75745628 | MS.gene33324:intron | 40.0% |
| ! | TTCCTTAAAGGGTGTGAATG+TGG | + | chr3.3:75745608-75745627 | MS.gene33324:intron | 40.0% |
| !! | CGATCAAGTGAAGGCATTAA+GGG | + | chr3.3:75744657-75744676 | MS.gene33324:CDS | 40.0% |
| !! | TCGATCAAGTGAAGGCATTA+AGG | + | chr3.3:75744656-75744675 | MS.gene33324:CDS | 40.0% |
| !!! | TTTTAGGACTTTTTGGGACG+GGG | - | chr3.3:75744476-75744495 | None:intergenic | 40.0% |
| ACCATCATGCATCAAGTGTC+CGG | - | chr3.3:75746019-75746038 | None:intergenic | 45.0% | |
| CATTGCCAACGTACCAATCA+TGG | + | chr3.3:75744747-75744766 | MS.gene33324:intron | 45.0% | |
| CCAACGCTTGCATGTATATG+TGG | + | chr3.3:75745865-75745884 | MS.gene33324:CDS | 45.0% | |
| CCACATATACATGCAAGCGT+TGG | - | chr3.3:75745868-75745887 | None:intergenic | 45.0% | |
| CTTGATTGGACGTTGGAGAT+TGG | + | chr3.3:75746128-75746147 | MS.gene33324:CDS | 45.0% | |
| GACCGATCCAATGTGTAGAA+TGG | - | chr3.3:75745559-75745578 | None:intergenic | 45.0% | |
| GAGTCTGGCAACAAATCATG+TGG | - | chr3.3:75744613-75744632 | None:intergenic | 45.0% | |
| TCCTCTCATATGCAATCTCG+TGG | - | chr3.3:75745915-75745934 | None:intergenic | 45.0% | |
| TCTTGCAGCCTCCTAATCTT+GGG | - | chr3.3:75746216-75746235 | None:intergenic | 45.0% | |
| TGATCGATGAACTCATCCGA+CGG | - | chr3.3:75744643-75744662 | None:intergenic | 45.0% | |
| TGGAGATTGGAGAAGCTAGA+GGG | + | chr3.3:75746141-75746160 | MS.gene33324:CDS | 45.0% | |
| TGGAGTTCTTGATTGGACGT+TGG | + | chr3.3:75746121-75746140 | MS.gene33324:CDS | 45.0% | |
| TGGGCCCGATCAAAATCATA+TGG | + | chr3.3:75745628-75745647 | MS.gene33324:intron | 45.0% | |
| TGGTTCAAGCACCAATCCAT+GGG | + | chr3.3:75744802-75744821 | MS.gene33324:CDS | 45.0% | |
| TTGGAGATTGGAGAAGCTAG+AGG | + | chr3.3:75746140-75746159 | MS.gene33324:CDS | 45.0% | |
| TTTAACAGACTGGATGGGGT+TGG | + | chr3.3:75744770-75744789 | MS.gene33324:intron | 45.0% | |
| ! | AGTGTCCGGGCATTGTTATA+TGG | - | chr3.3:75746005-75746024 | None:intergenic | 45.0% |
| !! | GAAGGCATTAAGGGATCGAA+CGG | + | chr3.3:75744666-75744685 | MS.gene33324:CDS | 45.0% |
| AAAAGTGGCTCGCTCTTGGA+AGG | - | chr3.3:75745800-75745819 | None:intergenic | 50.0% | |
| ACAGAAAAGTGGCTCGCTCT+TGG | - | chr3.3:75745804-75745823 | None:intergenic | 50.0% | |
| ATCGCTGTCATCGTCTCTGT+GGG | - | chr3.3:75745964-75745983 | None:intergenic | 50.0% | |
| CCAAACCAGTGGAGGAATGT+TGG | + | chr3.3:75744584-75744603 | MS.gene33324:CDS | 50.0% | |
| CCATCATGCATCAAGTGTCC+GGG | - | chr3.3:75746018-75746037 | None:intergenic | 50.0% | |
| CTAGAGGGTTTGACAAGCGA+GGG | + | chr3.3:75746156-75746175 | MS.gene33324:CDS | 50.0% | |
| CTCTTGCAGCCTCCTAATCT+TGG | - | chr3.3:75746217-75746236 | None:intergenic | 50.0% | |
| CTGGTTCAAGCACCAATCCA+TGG | + | chr3.3:75744801-75744820 | MS.gene33324:CDS | 50.0% | |
| GCCACGAGATTGCATATGAG+AGG | + | chr3.3:75745911-75745930 | MS.gene33324:CDS | 50.0% | |
| GCCCACATTCACACCCTTTA+AGG | - | chr3.3:75745613-75745632 | None:intergenic | 50.0% | |
| GTGCACAAGAGATCGTGTGT+GGG | + | chr3.3:75746184-75746203 | MS.gene33324:CDS | 50.0% | |
| TACGTTGGCAATGCTTCCCT+CGG | - | chr3.3:75744740-75744759 | None:intergenic | 50.0% | |
| TATCGCTGTCATCGTCTCTG+TGG | - | chr3.3:75745965-75745984 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | + | chr3.3:75746066-75746085 | MS.gene33324:CDS | 50.0% | |
| TGTATGGACACGCTCTTGGA+CGG | + | chr3.3:75744826-75744845 | MS.gene33324:CDS | 50.0% | |
| TGTCCATACAGCCCATGGAT+TGG | - | chr3.3:75744816-75744835 | None:intergenic | 50.0% | |
| ! | CCAACATTCCTCCACTGGTT+TGG | - | chr3.3:75744587-75744606 | None:intergenic | 50.0% |
| ! | TTTTCTGTCAGACGGCAGCA+TGG | + | chr3.3:75745816-75745835 | MS.gene33324:CDS | 50.0% |
| !! | GGGTCGGGTTGATATGTTCA+TGG | + | chr3.3:75744898-75744917 | MS.gene33324:CDS | 50.0% |
| !!! | CGAGCCACTTTTCTGTCAGA+CGG | + | chr3.3:75745808-75745827 | MS.gene33324:CDS | 50.0% |
| ACGGCTGAGGAGAATAGGCA+TGG | + | chr3.3:75744845-75744864 | MS.gene33324:CDS | 55.0% | |
| AGTGGGTGACATGATCACCG+AGG | + | chr3.3:75744720-75744739 | MS.gene33324:CDS | 55.0% | |
| CCCGGACACTTGATGCATGA+TGG | + | chr3.3:75746015-75746034 | MS.gene33324:CDS | 55.0% | |
| CGTGCACAAGAGATCGTGTG+TGG | + | chr3.3:75746183-75746202 | MS.gene33324:CDS | 55.0% | |
| CTCAATTAGGACCACGTGCG+TGG | + | chr3.3:75744425-75744444 | MS.gene33324:CDS | 55.0% | |
| CTTGGACGGCTGAGGAGAAT+AGG | + | chr3.3:75744840-75744859 | MS.gene33324:CDS | 55.0% | |
| GCCAGACTCTTCACTACCGT+CGG | + | chr3.3:75744624-75744643 | MS.gene33324:CDS | 55.0% | |
| GCTAGAGGGTTTGACAAGCG+AGG | + | chr3.3:75746155-75746174 | MS.gene33324:CDS | 55.0% | |
| GCTGCCGTCTGACAGAAAAG+TGG | - | chr3.3:75745815-75745834 | None:intergenic | 55.0% | |
| GGCTTGCACCCAAGATTAGG+AGG | + | chr3.3:75746205-75746224 | MS.gene33324:CDS | 55.0% | |
| GGGGCCTTTAGATGGCATTG+TGG | - | chr3.3:75744457-75744476 | None:intergenic | 55.0% | |
| GTGGGCTTGCACCCAAGATT+AGG | + | chr3.3:75746202-75746221 | MS.gene33324:CDS | 55.0% | |
| GTGGGTGACATGATCACCGA+GGG | + | chr3.3:75744721-75744740 | MS.gene33324:CDS | 55.0% | |
| TCCGACGGTAGTGAAGAGTC+TGG | - | chr3.3:75744628-75744647 | None:intergenic | 55.0% | |
| TCGCTGTCATCGTCTCTGTG+GGG | - | chr3.3:75745963-75745982 | None:intergenic | 55.0% | |
| TGTGGTAGAATCCACGCACG+TGG | - | chr3.3:75744439-75744458 | None:intergenic | 55.0% | |
| ! | GCACCAATCCATGGGCTGTA+TGG | + | chr3.3:75744810-75744829 | MS.gene33324:CDS | 55.0% |
| ! | TTTGGGACGGGGCCTTTAGA+TGG | - | chr3.3:75744465-75744484 | None:intergenic | 55.0% |
| !! | TCCTCCACTGGTTTGGCTAG+TGG | - | chr3.3:75744580-75744599 | None:intergenic | 55.0% |
| GAGCGTGTCCATACAGCCCA+TGG | - | chr3.3:75744821-75744840 | None:intergenic | 60.0% | |
| GATGGGGTTGGAGACGAGAC+TGG | + | chr3.3:75744782-75744801 | MS.gene33324:intron | 60.0% | |
| GCCACTAGCCAAACCAGTGG+AGG | + | chr3.3:75744576-75744595 | MS.gene33324:CDS | 60.0% | |
| GCTGCCACTAGCCAAACCAG+TGG | + | chr3.3:75744573-75744592 | MS.gene33324:CDS | 60.0% | |
| GGCTGCCAACATTCCTCCAC+TGG | - | chr3.3:75744592-75744611 | None:intergenic | 60.0% | |
| GGGCTGTATGGACACGCTCT+TGG | + | chr3.3:75744822-75744841 | MS.gene33324:CDS | 60.0% | |
| ! | CAGCATGGCTCGACTCGCTA+AGG | + | chr3.3:75745831-75745850 | MS.gene33324:CDS | 60.0% |
| ! | GCTCGACTCGCTAAGGAGAG+AGG | + | chr3.3:75745838-75745857 | MS.gene33324:CDS | 60.0% |
| GACACGCTCTTGGACGGCTG+AGG | + | chr3.3:75744832-75744851 | MS.gene33324:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 75744406 | 75746308 | 75744406 | ID=MS.gene33324 |
| chr3.3 | mRNA | 75744406 | 75746308 | 75744406 | ID=MS.gene33324.t1;Parent=MS.gene33324 |
| chr3.3 | exon | 75744406 | 75744756 | 75744406 | ID=MS.gene33324.t1.exon1;Parent=MS.gene33324.t1 |
| chr3.3 | CDS | 75744406 | 75744756 | 75744406 | ID=cds.MS.gene33324.t1;Parent=MS.gene33324.t1 |
| chr3.3 | exon | 75744800 | 75744958 | 75744800 | ID=MS.gene33324.t1.exon2;Parent=MS.gene33324.t1 |
| chr3.3 | CDS | 75744800 | 75744958 | 75744800 | ID=cds.MS.gene33324.t1;Parent=MS.gene33324.t1 |
| chr3.3 | exon | 75745751 | 75746308 | 75745751 | ID=MS.gene33324.t1.exon3;Parent=MS.gene33324.t1 |
| chr3.3 | CDS | 75745751 | 75746308 | 75745751 | ID=cds.MS.gene33324.t1;Parent=MS.gene33324.t1 |
| Gene Sequence |
| Protein sequence |
