Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33517.t1 | PNY17631.1 | 88.6 | 332 | 38 | 0 | 1 | 332 | 39 | 370 | 3.50E-171 | 610.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33517.t1 | Q84VY3 | 68.8 | 336 | 101 | 1 | 1 | 332 | 55 | 390 | 4.5e-135 | 482.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33517.t1 | A0A2K3PQT1 | 88.6 | 332 | 38 | 0 | 1 | 332 | 39 | 370 | 2.5e-171 | 610.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050563 | MS.gene33517 | 0.831549 | 1.57E-55 | -1.69E-46 |
| MS.gene050584 | MS.gene33517 | 0.830322 | 3.14E-55 | -1.69E-46 |
| MS.gene050585 | MS.gene33517 | 0.813516 | 2.46E-51 | -1.69E-46 |
| MS.gene050587 | MS.gene33517 | 0.842092 | 3.19E-58 | -1.69E-46 |
| MS.gene051789 | MS.gene33517 | 0.815213 | 1.04E-51 | -1.69E-46 |
| MS.gene052142 | MS.gene33517 | 0.815047 | 1.13E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene33517 | 0.849666 | 2.79E-60 | -1.69E-46 |
| MS.gene05456 | MS.gene33517 | 0.872467 | 3.11E-67 | -1.69E-46 |
| MS.gene055359 | MS.gene33517 | 0.816402 | 5.63E-52 | -1.69E-46 |
| MS.gene059006 | MS.gene33517 | 0.825951 | 3.54E-54 | -1.69E-46 |
| MS.gene059768 | MS.gene33517 | 0.820695 | 5.99E-53 | -1.69E-46 |
| MS.gene060691 | MS.gene33517 | 0.831298 | 1.81E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33517.t1 | MTR_3g090010 | 84.985 | 333 | 50 | 0 | 1 | 333 | 38 | 370 | 0.0 | 605 |
| MS.gene33517.t1 | MTR_3g090100 | 76.205 | 332 | 79 | 0 | 1 | 332 | 34 | 365 | 0.0 | 547 |
| MS.gene33517.t1 | MTR_3g090020 | 76.205 | 332 | 79 | 0 | 1 | 332 | 34 | 365 | 0.0 | 541 |
| MS.gene33517.t1 | MTR_1g029150 | 74.850 | 334 | 81 | 1 | 1 | 331 | 55 | 388 | 0.0 | 525 |
| MS.gene33517.t1 | MTR_3g089025 | 73.193 | 332 | 89 | 0 | 1 | 332 | 37 | 368 | 0.0 | 520 |
| MS.gene33517.t1 | MTR_5g024130 | 64.458 | 332 | 115 | 2 | 1 | 331 | 62 | 391 | 8.35e-159 | 450 |
| MS.gene33517.t1 | MTR_4g087440 | 64.458 | 332 | 115 | 2 | 1 | 331 | 62 | 391 | 1.19e-158 | 449 |
| MS.gene33517.t1 | MTR_3g090110 | 61.017 | 118 | 23 | 1 | 177 | 294 | 1 | 95 | 8.65e-43 | 144 |
| MS.gene33517.t1 | MTR_3g089980 | 68.367 | 98 | 18 | 1 | 197 | 294 | 6 | 90 | 2.85e-36 | 126 |
| MS.gene33517.t1 | MTR_3g089973 | 46.622 | 148 | 35 | 2 | 177 | 324 | 1 | 104 | 9.20e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33517.t1 | AT1G43800 | 68.750 | 336 | 101 | 1 | 1 | 332 | 55 | 390 | 1.49e-175 | 492 |
| MS.gene33517.t1 | AT3G02630 | 62.462 | 333 | 121 | 2 | 1 | 331 | 64 | 394 | 8.57e-154 | 437 |
| MS.gene33517.t1 | AT2G43710 | 62.651 | 332 | 121 | 2 | 1 | 331 | 70 | 399 | 9.16e-153 | 435 |
| MS.gene33517.t1 | AT2G43710 | 62.651 | 332 | 121 | 2 | 1 | 331 | 70 | 399 | 1.33e-152 | 434 |
| MS.gene33517.t1 | AT3G02610 | 62.611 | 337 | 119 | 4 | 1 | 331 | 76 | 411 | 9.05e-152 | 432 |
| MS.gene33517.t1 | AT3G02610 | 62.611 | 337 | 119 | 4 | 1 | 331 | 74 | 409 | 9.12e-152 | 432 |
| MS.gene33517.t1 | AT3G02620 | 61.424 | 337 | 123 | 4 | 1 | 331 | 69 | 404 | 4.68e-149 | 426 |
| MS.gene33517.t1 | AT3G02620 | 61.424 | 337 | 123 | 4 | 1 | 331 | 66 | 401 | 5.55e-149 | 425 |
| MS.gene33517.t1 | AT5G16230 | 62.048 | 332 | 121 | 4 | 4 | 331 | 69 | 399 | 5.60e-149 | 425 |
| MS.gene33517.t1 | AT5G16240 | 60.661 | 333 | 127 | 2 | 1 | 331 | 62 | 392 | 3.29e-148 | 423 |
| MS.gene33517.t1 | AT5G16230 | 61.420 | 324 | 120 | 4 | 12 | 331 | 1 | 323 | 3.87e-145 | 412 |
| MS.gene33517.t1 | AT3G02620 | 61.350 | 326 | 119 | 4 | 12 | 331 | 1 | 325 | 8.00e-145 | 412 |
Find 91 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGATCAAGTGAAGGCATTA+AGG | 0.300188 | 3.3:+75737810 | MS.gene33517:CDS |
| CTCTTGCAGCCTCCTAATCT+TGG | 0.308277 | 3.3:-75739367 | None:intergenic |
| AAAACATATCTCTATCTTTC+GGG | 0.321851 | 3.3:+75738031 | MS.gene33517:CDS |
| GGGTCGGGTTGATATGTTCA+TGG | 0.349549 | 3.3:+75738051 | MS.gene33517:CDS |
| CAAAACATATCTCTATCTTT+CGG | 0.357765 | 3.3:+75738030 | MS.gene33517:CDS |
| CTTGATTGGACGTTGGAGAT+TGG | 0.360703 | 3.3:+75739281 | MS.gene33517:CDS |
| GATAGCTTGGAGTTCTTGAT+TGG | 0.365666 | 3.3:+75739267 | MS.gene33517:CDS |
| CCAACATTCCTCCACTGGTT+TGG | 0.368196 | 3.3:-75737738 | None:intergenic |
| TTGCTTATGGTGTAGGATAT+AGG | 0.368907 | 3.3:+75738889 | MS.gene33517:intron |
| ACCATCATGCATCAAGTGTC+CGG | 0.383908 | 3.3:-75739169 | None:intergenic |
| AGTGTCCGGGCATTGTTATA+TGG | 0.388397 | 3.3:-75739155 | None:intergenic |
| GGGCTGTATGGACACGCTCT+TGG | 0.392310 | 3.3:+75737975 | MS.gene33517:CDS |
| CGATCAAGTGAAGGCATTAA+GGG | 0.400225 | 3.3:+75737811 | MS.gene33517:CDS |
| TTTCAAGTCATTAGAGAGTT+GGG | 0.400750 | 3.3:+75737691 | MS.gene33517:CDS |
| ACAGAAAAGTGGCTCGCTCT+TGG | 0.405583 | 3.3:-75738954 | None:intergenic |
| AGATGAAACCTAAGTTTAGT+TGG | 0.414064 | 3.3:+75739412 | MS.gene33517:CDS |
| CATTGCCAACGTACCAATCA+TGG | 0.428195 | 3.3:+75737900 | MS.gene33517:CDS |
| ATCGCTGTCATCGTCTCTGT+GGG | 0.438188 | 3.3:-75739114 | None:intergenic |
| GTGGGCTTGCACCCAAGATT+AGG | 0.440604 | 3.3:+75739355 | MS.gene33517:CDS |
| GCACCAATCCATGGGCTGTA+TGG | 0.441370 | 3.3:+75737963 | MS.gene33517:CDS |
| CTTGGACGGCTGAGGAGAAT+AGG | 0.445934 | 3.3:+75737993 | MS.gene33517:CDS |
| TCGAAGACCCAACTAAACTT+AGG | 0.447054 | 3.3:-75739420 | None:intergenic |
| AAAACTACAAAATAATCGTT+TGG | 0.448525 | 3.3:-75737851 | None:intergenic |
| GATGAAACCTAAGTTTAGTT+GGG | 0.451996 | 3.3:+75739413 | MS.gene33517:CDS |
| ATATCTCTATCTTTCGGGTC+GGG | 0.456137 | 3.3:+75738036 | MS.gene33517:CDS |
| TCCTCCACTGGTTTGGCTAG+TGG | 0.461572 | 3.3:-75737731 | None:intergenic |
| CCAGTCTGTTAAACCATGAT+TGG | 0.462427 | 3.3:-75737913 | None:intergenic |
| GGCTGCCAACATTCCTCCAC+TGG | 0.466668 | 3.3:-75737743 | None:intergenic |
| CTGCAGAGAAATGACTGAAT+AGG | 0.475282 | 3.3:-75739203 | None:intergenic |
| TCTTGCAGCCTCCTAATCTT+GGG | 0.478217 | 3.3:-75739366 | None:intergenic |
| GCATAAGCAAAAGCCTTGTA+TGG | 0.479543 | 3.3:-75738925 | None:intergenic |
| TCTGCAGTGGCACAACGTAT+TGG | 0.480986 | 3.3:+75739219 | MS.gene33517:CDS |
| GTACGTTGGCAATGCTTCCT+CGG | 0.500450 | 3.3:-75737891 | None:intergenic |
| ATCCAATACTTAATTAGAGC+TGG | 0.502293 | 3.3:+75738085 | MS.gene33517:CDS |
| ATGGTGTAGGATATAGGAAC+AGG | 0.502877 | 3.3:+75738895 | MS.gene33517:intron |
| TGCCAGCTCTAATTAAGTAT+TGG | 0.509971 | 3.3:-75738087 | None:intergenic |
| CCAATCATGGTTTAACAGAC+TGG | 0.510965 | 3.3:+75737913 | MS.gene33517:CDS |
| CATATCTCTATCTTTCGGGT+CGG | 0.512882 | 3.3:+75738035 | MS.gene33517:CDS |
| ATGGTTTAACAGACTGGATG+GGG | 0.515527 | 3.3:+75737919 | MS.gene33517:CDS |
| CTGGTTCAAGCACCAATCCA+TGG | 0.522757 | 3.3:+75737954 | MS.gene33517:CDS |
| TCATGGTTTAACAGACTGGA+TGG | 0.523384 | 3.3:+75737917 | MS.gene33517:CDS |
| CCAAACCAGTGGAGGAATGT+TGG | 0.526760 | 3.3:+75737738 | MS.gene33517:CDS |
| CAGCATGGCTCGACTCGCTA+AGG | 0.531189 | 3.3:+75738984 | MS.gene33517:CDS |
| GATGGGGTTGGAGACGAGAC+TGG | 0.544491 | 3.3:+75737935 | MS.gene33517:CDS |
| CCATCATGCATCAAGTGTCC+GGG | 0.545387 | 3.3:-75739168 | None:intergenic |
| TCCGACGGTAGTGAAGAGTC+TGG | 0.546524 | 3.3:-75737779 | None:intergenic |
| TTTAACAGACTGGATGGGGT+TGG | 0.546711 | 3.3:+75737923 | MS.gene33517:CDS |
| CATGGTTTAACAGACTGGAT+GGG | 0.552177 | 3.3:+75737918 | MS.gene33517:CDS |
| TGTATGGACACGCTCTTGGA+CGG | 0.555722 | 3.3:+75737979 | MS.gene33517:CDS |
| AAAAGTGGCTCGCTCTTGGA+AGG | 0.559887 | 3.3:-75738950 | None:intergenic |
| ATACTTAATTAGAGCTGGCA+TGG | 0.560206 | 3.3:+75738090 | MS.gene33517:CDS |
| AGTAACCATATAACAATGCC+CGG | 0.565594 | 3.3:+75739150 | MS.gene33517:CDS |
| GAGCGTGTCCATACAGCCCA+TGG | 0.565706 | 3.3:-75737971 | None:intergenic |
| TAGTGACTACATCGATAGCT+TGG | 0.572127 | 3.3:+75739254 | MS.gene33517:CDS |
| TATCGCTGTCATCGTCTCTG+TGG | 0.572162 | 3.3:-75739115 | None:intergenic |
| CCAACGCTTGCATGTATATG+TGG | 0.573043 | 3.3:+75739018 | MS.gene33517:CDS |
| TGTCCATACAGCCCATGGAT+TGG | 0.576962 | 3.3:-75737966 | None:intergenic |
| CCACATATACATGCAAGCGT+TGG | 0.581994 | 3.3:-75739018 | None:intergenic |
| TTAAACCATGATTGGTACGT+TGG | 0.582627 | 3.3:-75737905 | None:intergenic |
| TGGTTCAAGCACCAATCCAT+GGG | 0.582779 | 3.3:+75737955 | MS.gene33517:CDS |
| GACACGCTCTTGGACGGCTG+AGG | 0.585462 | 3.3:+75737985 | MS.gene33517:CDS |
| ATTCAGTCATTTCTCTGCAG+TGG | 0.588279 | 3.3:+75739206 | MS.gene33517:CDS |
| GGCTTGCACCCAAGATTAGG+AGG | 0.589066 | 3.3:+75739358 | MS.gene33517:CDS |
| AACAGGAAGTAATCCATACA+AGG | 0.590466 | 3.3:+75738912 | MS.gene33517:CDS |
| GCCAGACTCTTCACTACCGT+CGG | 0.590866 | 3.3:+75737778 | MS.gene33517:CDS |
| TGGAGTTCTTGATTGGACGT+TGG | 0.591629 | 3.3:+75739274 | MS.gene33517:CDS |
| CCCGGACACTTGATGCATGA+TGG | 0.596093 | 3.3:+75739168 | MS.gene33517:CDS |
| GCCACTAGCCAAACCAGTGG+AGG | 0.597505 | 3.3:+75737730 | MS.gene33517:CDS |
| ACAACGTATTGGTGTGTACA+CGG | 0.599250 | 3.3:+75739230 | MS.gene33517:CDS |
| GCTGCCGTCTGACAGAAAAG+TGG | 0.600013 | 3.3:-75738965 | None:intergenic |
| GATCATTGCAAAACTTCTAG+AGG | 0.605970 | 3.3:+75739086 | MS.gene33517:CDS |
| GCTAGAGGGTTTGACAAGCG+AGG | 0.609085 | 3.3:+75739308 | MS.gene33517:CDS |
| TGGAGATTGGAGAAGCTAGA+GGG | 0.609211 | 3.3:+75739294 | MS.gene33517:CDS |
| GAAGGCATTAAGGGATCGAA+CGG | 0.611309 | 3.3:+75737820 | MS.gene33517:CDS |
| AGAAATGACTGAATAGGTGT+GGG | 0.611780 | 3.3:-75739197 | None:intergenic |
| TTGGAGATTGGAGAAGCTAG+AGG | 0.613405 | 3.3:+75739293 | MS.gene33517:CDS |
| CGTGCACAAGAGATCGTGTG+TGG | 0.620067 | 3.3:+75739336 | MS.gene33517:CDS |
| ACGGCTGAGGAGAATAGGCA+TGG | 0.622537 | 3.3:+75737998 | MS.gene33517:CDS |
| CATTGCAAAACTTCTAGAGG+TGG | 0.625212 | 3.3:+75739089 | MS.gene33517:CDS |
| CTAGAGGGTTTGACAAGCGA+GGG | 0.626748 | 3.3:+75739309 | MS.gene33517:CDS |
| GCTCGACTCGCTAAGGAGAG+AGG | 0.626899 | 3.3:+75738991 | MS.gene33517:CDS |
| TGAGTTCATCGATCAAGTGA+AGG | 0.637744 | 3.3:+75737802 | MS.gene33517:CDS |
| GCCACGAGATTGCATATGAG+AGG | 0.641136 | 3.3:+75739064 | MS.gene33517:CDS |
| GAGAAATGACTGAATAGGTG+TGG | 0.645655 | 3.3:-75739198 | None:intergenic |
| TCCTCTCATATGCAATCTCG+TGG | 0.655385 | 3.3:-75739065 | None:intergenic |
| GTGCACAAGAGATCGTGTGT+GGG | 0.665993 | 3.3:+75739337 | MS.gene33517:CDS |
| TCGCTGTCATCGTCTCTGTG+GGG | 0.704169 | 3.3:-75739113 | None:intergenic |
| TGATCGATGAACTCATCCGA+CGG | 0.705040 | 3.3:-75737794 | None:intergenic |
| GCTGCCACTAGCCAAACCAG+TGG | 0.706140 | 3.3:+75737727 | MS.gene33517:CDS |
| GAGTCTGGCAACAAATCATG+TGG | 0.719794 | 3.3:-75737764 | None:intergenic |
| AGTGGGTGACATGATCACCG+AGG | 0.783297 | 3.3:+75737874 | MS.gene33517:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATCATAAATGAAATAA+CGG | - | chr3.3:75738530-75738549 | None:intergenic | 15.0% |
| !! | TAAAATTAATTGATTGCTTA+TGG | + | chr3.3:75738876-75738895 | MS.gene33517:intron | 15.0% |
| !! | TATTTCATTTATGATTAAGA+TGG | + | chr3.3:75738531-75738550 | MS.gene33517:intron | 15.0% |
| !!! | AGTCTAAAATAATTGTTATA+TGG | + | chr3.3:75738572-75738591 | MS.gene33517:intron | 15.0% |
| !!! | ATGATATTTTTTATACACAT+CGG | - | chr3.3:75738250-75738269 | None:intergenic | 15.0% |
| !! | AAAACTACAAAATAATCGTT+TGG | - | chr3.3:75737854-75737873 | None:intergenic | 20.0% |
| !! | AAAAGTGGAAGAAATATTAT+AGG | + | chr3.3:75738477-75738496 | MS.gene33517:intron | 20.0% |
| !! | ATTACCAAAAAAATTGTATG+TGG | - | chr3.3:75738670-75738689 | None:intergenic | 20.0% |
| !! | TTACCAAAAAAATTGTATGT+GGG | - | chr3.3:75738669-75738688 | None:intergenic | 20.0% |
| !!! | ATATCTTTCCATATTCATTT+TGG | + | chr3.3:75738409-75738428 | MS.gene33517:intron | 20.0% |
| !!! | CTTGAAAATTTCTTTCTTTT+CGG | - | chr3.3:75737678-75737697 | None:intergenic | 20.0% |
| !!! | GATTATTTTGTAGTTTTAGT+GGG | + | chr3.3:75737857-75737876 | MS.gene33517:CDS | 20.0% |
| !!! | TATCTTTCCATATTCATTTT+GGG | + | chr3.3:75738410-75738429 | MS.gene33517:intron | 20.0% |
| !!! | TGGTAAAGATTTAAAAGTAT+GGG | - | chr3.3:75738438-75738457 | None:intergenic | 20.0% |
| !!! | TTGAAAATTTCTTTCTTTTC+GGG | - | chr3.3:75737677-75737696 | None:intergenic | 20.0% |
| ! | AAAACATATCTCTATCTTTC+GGG | + | chr3.3:75738031-75738050 | MS.gene33517:CDS | 25.0% |
| ! | AATTTGTGTGGATCAATTTA+CGG | + | chr3.3:75738293-75738312 | MS.gene33517:intron | 25.0% |
| ! | ATCATCCATGTAAAAAAACA+GGG | - | chr3.3:75738836-75738855 | None:intergenic | 25.0% |
| ! | ATTCTTACTTTGTTCCTTAA+AGG | + | chr3.3:75738750-75738769 | MS.gene33517:intron | 25.0% |
| ! | CAAAACATATCTCTATCTTT+CGG | + | chr3.3:75738030-75738049 | MS.gene33517:CDS | 25.0% |
| ! | CTGGTAAAGATTTAAAAGTA+TGG | - | chr3.3:75738439-75738458 | None:intergenic | 25.0% |
| ! | TACCAAAAAAATTGTATGTG+GGG | - | chr3.3:75738668-75738687 | None:intergenic | 25.0% |
| ! | TATCATCCATGTAAAAAAAC+AGG | - | chr3.3:75738837-75738856 | None:intergenic | 25.0% |
| ! | TTAAAATCAGAGAAGATATC+TGG | - | chr3.3:75738458-75738477 | None:intergenic | 25.0% |
| ! | TTCTTACTTTGTTCCTTAAA+GGG | + | chr3.3:75738751-75738770 | MS.gene33517:intron | 25.0% |
| !! | ATCTTTCCATATTCATTTTG+GGG | + | chr3.3:75738411-75738430 | MS.gene33517:intron | 25.0% |
| !!! | ACAATTTTTTTGGTAATGCT+TGG | + | chr3.3:75738673-75738692 | MS.gene33517:intron | 25.0% |
| !!! | CGATTATTTTGTAGTTTTAG+TGG | + | chr3.3:75737856-75737875 | MS.gene33517:CDS | 25.0% |
| !!! | TCTTCTCTGATTTTAAAAAG+TGG | + | chr3.3:75738462-75738481 | MS.gene33517:intron | 25.0% |
| AGATGAAACCTAAGTTTAGT+TGG | + | chr3.3:75739412-75739431 | MS.gene33517:CDS | 30.0% | |
| ATCCAATACTTAATTAGAGC+TGG | + | chr3.3:75738085-75738104 | MS.gene33517:CDS | 30.0% | |
| CATTCAAATGTGAATTTGTG+TGG | + | chr3.3:75738281-75738300 | MS.gene33517:intron | 30.0% | |
| GATGAAACCTAAGTTTAGTT+GGG | + | chr3.3:75739413-75739432 | MS.gene33517:CDS | 30.0% | |
| GTAAAAAAACAGGGTAATGT+AGG | - | chr3.3:75738827-75738846 | None:intergenic | 30.0% | |
| TAATTGATTGCTTATGGTGT+AGG | + | chr3.3:75738882-75738901 | MS.gene33517:intron | 30.0% | |
| ! | TAGACTTTTACAAAGAGAGA+GGG | - | chr3.3:75738558-75738577 | None:intergenic | 30.0% |
| ! | TTAGACTTTTACAAAGAGAG+AGG | - | chr3.3:75738559-75738578 | None:intergenic | 30.0% |
| ! | TTTCAAGTCATTAGAGAGTT+GGG | + | chr3.3:75737691-75737710 | MS.gene33517:CDS | 30.0% |
| !! | TCCATCCATATGATTTTGAT+CGG | - | chr3.3:75738790-75738809 | None:intergenic | 30.0% |
| !!! | CATTACCCTGTTTTTTTACA+TGG | + | chr3.3:75738828-75738847 | MS.gene33517:intron | 30.0% |
| !!! | TTCCCCACATACAATTTTTT+TGG | + | chr3.3:75738663-75738682 | MS.gene33517:intron | 30.0% |
| !!! | TTTTCAAGTCATTAGAGAGT+TGG | + | chr3.3:75737690-75737709 | MS.gene33517:CDS | 30.0% |
| AACAGGAAGTAATCCATACA+AGG | + | chr3.3:75738912-75738931 | MS.gene33517:CDS | 35.0% | |
| AGAAATGACTGAATAGGTGT+GGG | - | chr3.3:75739200-75739219 | None:intergenic | 35.0% | |
| AGTAACCATATAACAATGCC+CGG | + | chr3.3:75739150-75739169 | MS.gene33517:CDS | 35.0% | |
| ATACTTAATTAGAGCTGGCA+TGG | + | chr3.3:75738090-75738109 | MS.gene33517:CDS | 35.0% | |
| ATCCATTCTACACATTGGAT+CGG | + | chr3.3:75738708-75738727 | MS.gene33517:intron | 35.0% | |
| ATGTGTAGAATGGATGAATG+TGG | - | chr3.3:75738703-75738722 | None:intergenic | 35.0% | |
| CATGCAAATACTCACATAAG+AGG | - | chr3.3:75738368-75738387 | None:intergenic | 35.0% | |
| CATTCATCCATTCTACACAT+TGG | + | chr3.3:75738703-75738722 | MS.gene33517:intron | 35.0% | |
| GATCATTGCAAAACTTCTAG+AGG | + | chr3.3:75739086-75739105 | MS.gene33517:CDS | 35.0% | |
| TTAAACCATGATTGGTACGT+TGG | - | chr3.3:75737908-75737927 | None:intergenic | 35.0% | |
| TTGCTTATGGTGTAGGATAT+AGG | + | chr3.3:75738889-75738908 | MS.gene33517:intron | 35.0% | |
| ! | AGACTTTTACAAAGAGAGAG+GGG | - | chr3.3:75738557-75738576 | None:intergenic | 35.0% |
| ! | TGCCAGCTCTAATTAAGTAT+TGG | - | chr3.3:75738090-75738109 | None:intergenic | 35.0% |
| !! | CCATCCATATGATTTTGATC+GGG | - | chr3.3:75738789-75738808 | None:intergenic | 35.0% |
| AAACAGGGTAATGTAGGTGA+TGG | - | chr3.3:75738821-75738840 | None:intergenic | 40.0% | |
| ATGGGACCCCAAAATGAATA+TGG | - | chr3.3:75738420-75738439 | None:intergenic | 40.0% | |
| ATGGTGTAGGATATAGGAAC+AGG | + | chr3.3:75738895-75738914 | MS.gene33517:intron | 40.0% | |
| ATGGTTTAACAGACTGGATG+GGG | + | chr3.3:75737919-75737938 | MS.gene33517:CDS | 40.0% | |
| ATTCAGTCATTTCTCTGCAG+TGG | + | chr3.3:75739206-75739225 | MS.gene33517:CDS | 40.0% | |
| CATGGTTTAACAGACTGGAT+GGG | + | chr3.3:75737918-75737937 | MS.gene33517:CDS | 40.0% | |
| CCAATCATGGTTTAACAGAC+TGG | + | chr3.3:75737913-75737932 | MS.gene33517:CDS | 40.0% | |
| CCAGTCTGTTAAACCATGAT+TGG | - | chr3.3:75737916-75737935 | None:intergenic | 40.0% | |
| CCCGATCAAAATCATATGGA+TGG | + | chr3.3:75738786-75738805 | MS.gene33517:intron | 40.0% | |
| CTGCAGAGAAATGACTGAAT+AGG | - | chr3.3:75739206-75739225 | None:intergenic | 40.0% | |
| GAGAAATGACTGAATAGGTG+TGG | - | chr3.3:75739201-75739220 | None:intergenic | 40.0% | |
| GATAGCTTGGAGTTCTTGAT+TGG | + | chr3.3:75739267-75739286 | MS.gene33517:CDS | 40.0% | |
| TAGTGACTACATCGATAGCT+TGG | + | chr3.3:75739254-75739273 | MS.gene33517:CDS | 40.0% | |
| TCATGGTTTAACAGACTGGA+TGG | + | chr3.3:75737917-75737936 | MS.gene33517:CDS | 40.0% | |
| TCGAAGACCCAACTAAACTT+AGG | - | chr3.3:75739423-75739442 | None:intergenic | 40.0% | |
| TGAGTTCATCGATCAAGTGA+AGG | + | chr3.3:75737802-75737821 | MS.gene33517:CDS | 40.0% | |
| ! | ACAACGTATTGGTGTGTACA+CGG | + | chr3.3:75739230-75739249 | MS.gene33517:CDS | 40.0% |
| ! | ATATCTCTATCTTTCGGGTC+GGG | + | chr3.3:75738036-75738055 | MS.gene33517:CDS | 40.0% |
| ! | CATATCTCTATCTTTCGGGT+CGG | + | chr3.3:75738035-75738054 | MS.gene33517:CDS | 40.0% |
| ! | CATTGCAAAACTTCTAGAGG+TGG | + | chr3.3:75739089-75739108 | MS.gene33517:CDS | 40.0% |
| ! | GCATAAGCAAAAGCCTTGTA+TGG | - | chr3.3:75738928-75738947 | None:intergenic | 40.0% |
| ! | TCCTTAAAGGGTGTGAATGT+GGG | + | chr3.3:75738763-75738782 | MS.gene33517:intron | 40.0% |
| ! | TTCCTTAAAGGGTGTGAATG+TGG | + | chr3.3:75738762-75738781 | MS.gene33517:intron | 40.0% |
| !! | CGATCAAGTGAAGGCATTAA+GGG | + | chr3.3:75737811-75737830 | MS.gene33517:CDS | 40.0% |
| !! | TCGATCAAGTGAAGGCATTA+AGG | + | chr3.3:75737810-75737829 | MS.gene33517:CDS | 40.0% |
| ACCATCATGCATCAAGTGTC+CGG | - | chr3.3:75739172-75739191 | None:intergenic | 45.0% | |
| CATTGCCAACGTACCAATCA+TGG | + | chr3.3:75737900-75737919 | MS.gene33517:CDS | 45.0% | |
| CCAACGCTTGCATGTATATG+TGG | + | chr3.3:75739018-75739037 | MS.gene33517:CDS | 45.0% | |
| CCACATATACATGCAAGCGT+TGG | - | chr3.3:75739021-75739040 | None:intergenic | 45.0% | |
| CTTGATTGGACGTTGGAGAT+TGG | + | chr3.3:75739281-75739300 | MS.gene33517:CDS | 45.0% | |
| GACCGATCCAATGTGTAGAA+TGG | - | chr3.3:75738713-75738732 | None:intergenic | 45.0% | |
| GAGTCTGGCAACAAATCATG+TGG | - | chr3.3:75737767-75737786 | None:intergenic | 45.0% | |
| TCCTCTCATATGCAATCTCG+TGG | - | chr3.3:75739068-75739087 | None:intergenic | 45.0% | |
| TCTTGCAGCCTCCTAATCTT+GGG | - | chr3.3:75739369-75739388 | None:intergenic | 45.0% | |
| TGATCGATGAACTCATCCGA+CGG | - | chr3.3:75737797-75737816 | None:intergenic | 45.0% | |
| TGGAGATTGGAGAAGCTAGA+GGG | + | chr3.3:75739294-75739313 | MS.gene33517:CDS | 45.0% | |
| TGGAGTTCTTGATTGGACGT+TGG | + | chr3.3:75739274-75739293 | MS.gene33517:CDS | 45.0% | |
| TGGGCCCGATCAAAATCATA+TGG | + | chr3.3:75738782-75738801 | MS.gene33517:intron | 45.0% | |
| TGGTTCAAGCACCAATCCAT+GGG | + | chr3.3:75737955-75737974 | MS.gene33517:CDS | 45.0% | |
| TTGGAGATTGGAGAAGCTAG+AGG | + | chr3.3:75739293-75739312 | MS.gene33517:CDS | 45.0% | |
| TTTAACAGACTGGATGGGGT+TGG | + | chr3.3:75737923-75737942 | MS.gene33517:CDS | 45.0% | |
| ! | AGTGTCCGGGCATTGTTATA+TGG | - | chr3.3:75739158-75739177 | None:intergenic | 45.0% |
| !! | GAAGGCATTAAGGGATCGAA+CGG | + | chr3.3:75737820-75737839 | MS.gene33517:CDS | 45.0% |
| AAAAGTGGCTCGCTCTTGGA+AGG | - | chr3.3:75738953-75738972 | None:intergenic | 50.0% | |
| ACAGAAAAGTGGCTCGCTCT+TGG | - | chr3.3:75738957-75738976 | None:intergenic | 50.0% | |
| ATCGCTGTCATCGTCTCTGT+GGG | - | chr3.3:75739117-75739136 | None:intergenic | 50.0% | |
| CCAAACCAGTGGAGGAATGT+TGG | + | chr3.3:75737738-75737757 | MS.gene33517:CDS | 50.0% | |
| CCATCATGCATCAAGTGTCC+GGG | - | chr3.3:75739171-75739190 | None:intergenic | 50.0% | |
| CTAGAGGGTTTGACAAGCGA+GGG | + | chr3.3:75739309-75739328 | MS.gene33517:CDS | 50.0% | |
| CTCTTGCAGCCTCCTAATCT+TGG | - | chr3.3:75739370-75739389 | None:intergenic | 50.0% | |
| CTGGTTCAAGCACCAATCCA+TGG | + | chr3.3:75737954-75737973 | MS.gene33517:CDS | 50.0% | |
| GCCACGAGATTGCATATGAG+AGG | + | chr3.3:75739064-75739083 | MS.gene33517:CDS | 50.0% | |
| GCCCACATTCACACCCTTTA+AGG | - | chr3.3:75738767-75738786 | None:intergenic | 50.0% | |
| GTACGTTGGCAATGCTTCCT+CGG | - | chr3.3:75737894-75737913 | None:intergenic | 50.0% | |
| GTGCACAAGAGATCGTGTGT+GGG | + | chr3.3:75739337-75739356 | MS.gene33517:CDS | 50.0% | |
| TATCGCTGTCATCGTCTCTG+TGG | - | chr3.3:75739118-75739137 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | + | chr3.3:75739219-75739238 | MS.gene33517:CDS | 50.0% | |
| TGTATGGACACGCTCTTGGA+CGG | + | chr3.3:75737979-75737998 | MS.gene33517:CDS | 50.0% | |
| TGTCCATACAGCCCATGGAT+TGG | - | chr3.3:75737969-75737988 | None:intergenic | 50.0% | |
| ! | CCAACATTCCTCCACTGGTT+TGG | - | chr3.3:75737741-75737760 | None:intergenic | 50.0% |
| ! | TTTTCTGTCAGACGGCAGCA+TGG | + | chr3.3:75738969-75738988 | MS.gene33517:CDS | 50.0% |
| !! | GGGTCGGGTTGATATGTTCA+TGG | + | chr3.3:75738051-75738070 | MS.gene33517:CDS | 50.0% |
| !!! | CGAGCCACTTTTCTGTCAGA+CGG | + | chr3.3:75738961-75738980 | MS.gene33517:CDS | 50.0% |
| ACGGCTGAGGAGAATAGGCA+TGG | + | chr3.3:75737998-75738017 | MS.gene33517:CDS | 55.0% | |
| AGTGGGTGACATGATCACCG+AGG | + | chr3.3:75737874-75737893 | MS.gene33517:CDS | 55.0% | |
| CCCGGACACTTGATGCATGA+TGG | + | chr3.3:75739168-75739187 | MS.gene33517:CDS | 55.0% | |
| CGTGCACAAGAGATCGTGTG+TGG | + | chr3.3:75739336-75739355 | MS.gene33517:CDS | 55.0% | |
| CTTGGACGGCTGAGGAGAAT+AGG | + | chr3.3:75737993-75738012 | MS.gene33517:CDS | 55.0% | |
| GCCAGACTCTTCACTACCGT+CGG | + | chr3.3:75737778-75737797 | MS.gene33517:CDS | 55.0% | |
| GCTAGAGGGTTTGACAAGCG+AGG | + | chr3.3:75739308-75739327 | MS.gene33517:CDS | 55.0% | |
| GCTGCCGTCTGACAGAAAAG+TGG | - | chr3.3:75738968-75738987 | None:intergenic | 55.0% | |
| GGCTTGCACCCAAGATTAGG+AGG | + | chr3.3:75739358-75739377 | MS.gene33517:CDS | 55.0% | |
| GTGGGCTTGCACCCAAGATT+AGG | + | chr3.3:75739355-75739374 | MS.gene33517:CDS | 55.0% | |
| TCCGACGGTAGTGAAGAGTC+TGG | - | chr3.3:75737782-75737801 | None:intergenic | 55.0% | |
| TCGCTGTCATCGTCTCTGTG+GGG | - | chr3.3:75739116-75739135 | None:intergenic | 55.0% | |
| ! | GCACCAATCCATGGGCTGTA+TGG | + | chr3.3:75737963-75737982 | MS.gene33517:CDS | 55.0% |
| !! | TCCTCCACTGGTTTGGCTAG+TGG | - | chr3.3:75737734-75737753 | None:intergenic | 55.0% |
| GAGCGTGTCCATACAGCCCA+TGG | - | chr3.3:75737974-75737993 | None:intergenic | 60.0% | |
| GATGGGGTTGGAGACGAGAC+TGG | + | chr3.3:75737935-75737954 | MS.gene33517:CDS | 60.0% | |
| GCCACTAGCCAAACCAGTGG+AGG | + | chr3.3:75737730-75737749 | MS.gene33517:CDS | 60.0% | |
| GCTGCCACTAGCCAAACCAG+TGG | + | chr3.3:75737727-75737746 | MS.gene33517:CDS | 60.0% | |
| GGCTGCCAACATTCCTCCAC+TGG | - | chr3.3:75737746-75737765 | None:intergenic | 60.0% | |
| GGGCTGTATGGACACGCTCT+TGG | + | chr3.3:75737975-75737994 | MS.gene33517:CDS | 60.0% | |
| ! | CAGCATGGCTCGACTCGCTA+AGG | + | chr3.3:75738984-75739003 | MS.gene33517:CDS | 60.0% |
| ! | GCTCGACTCGCTAAGGAGAG+AGG | + | chr3.3:75738991-75739010 | MS.gene33517:CDS | 60.0% |
| GACACGCTCTTGGACGGCTG+AGG | + | chr3.3:75737985-75738004 | MS.gene33517:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 75737668 | 75739461 | 75737668 | ID=MS.gene33517 |
| chr3.3 | mRNA | 75737668 | 75739461 | 75737668 | ID=MS.gene33517.t1;Parent=MS.gene33517 |
| chr3.3 | exon | 75737668 | 75738111 | 75737668 | ID=MS.gene33517.t1.exon1;Parent=MS.gene33517.t1 |
| chr3.3 | CDS | 75737668 | 75738111 | 75737668 | ID=cds.MS.gene33517.t1;Parent=MS.gene33517.t1 |
| chr3.3 | exon | 75738904 | 75739461 | 75738904 | ID=MS.gene33517.t1.exon2;Parent=MS.gene33517.t1 |
| chr3.3 | CDS | 75738904 | 75739461 | 75738904 | ID=cds.MS.gene33517.t1;Parent=MS.gene33517.t1 |
| Gene Sequence |
| Protein sequence |
