Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33563.t1 | XP_024626113.1 | 97.4 | 228 | 6 | 0 | 5 | 232 | 23 | 250 | 1.60E-120 | 442.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33563.t1 | Q30QB8 | 41.3 | 167 | 89 | 4 | 5 | 169 | 17 | 176 | 4.2e-24 | 113.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33563.t1 | G7ID60 | 97.4 | 228 | 6 | 0 | 5 | 232 | 23 | 250 | 1.2e-120 | 442.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33563 | MS.gene85230 | PPI |
| MS.gene051956 | MS.gene33563 | PPI |
| MS.gene33563 | MS.gene057003 | PPI |
| MS.gene76157 | MS.gene33563 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33563.t1 | MTR_1g104500 | 97.368 | 228 | 6 | 0 | 5 | 232 | 23 | 250 | 3.09e-166 | 462 |
| MS.gene33563.t1 | MTR_5g006290 | 72.609 | 230 | 62 | 1 | 5 | 233 | 23 | 252 | 2.01e-126 | 360 |
| MS.gene33563.t1 | MTR_5g006290 | 71.064 | 235 | 67 | 1 | 5 | 238 | 23 | 257 | 4.05e-125 | 358 |
| MS.gene33563.t1 | MTR_5g006300 | 67.234 | 235 | 64 | 3 | 5 | 232 | 22 | 250 | 5.78e-112 | 323 |
| MS.gene33563.t1 | MTR_2g099720 | 46.354 | 192 | 102 | 1 | 4 | 194 | 64 | 255 | 4.13e-55 | 181 |
| MS.gene33563.t1 | MTR_1g104513 | 80.435 | 46 | 9 | 0 | 187 | 232 | 1 | 46 | 3.37e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33563.t1 | AT4G14930 | 62.661 | 233 | 82 | 3 | 5 | 232 | 28 | 260 | 4.44e-106 | 310 |
| MS.gene33563.t1 | AT4G14930 | 62.661 | 233 | 82 | 3 | 5 | 232 | 28 | 260 | 9.56e-106 | 309 |
| MS.gene33563.t1 | AT1G72880 | 46.073 | 191 | 102 | 1 | 5 | 194 | 75 | 265 | 4.11e-52 | 174 |
| MS.gene33563.t1 | AT1G72880 | 46.073 | 191 | 102 | 1 | 5 | 194 | 75 | 265 | 4.11e-52 | 174 |
Find 57 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAAATAAAAGACTTTC+AGG | 0.149345 | 1.3:-71210294 | None:intergenic |
| ACTACAGCCTATGCAGTTTC+TGG | 0.181881 | 1.3:+71208512 | MS.gene33563:CDS |
| TCCATCAATGTGAACTTTCT+TGG | 0.253618 | 1.3:-71208489 | None:intergenic |
| ACCTATCATAAGTGCTTTAC+TGG | 0.275204 | 1.3:+71209875 | MS.gene33563:CDS |
| CGGCAAGGGTGAAGTCATTT+AGG | 0.287038 | 1.3:-71209839 | None:intergenic |
| CTTTCCTACAGTTGCTGATC+TGG | 0.331224 | 1.3:+71208865 | MS.gene33563:CDS |
| TACTATCAATCCAGGGTTAA+AGG | 0.335634 | 1.3:+71209807 | MS.gene33563:intron |
| TTCTGATTTGCAACGTTGCT+TGG | 0.339298 | 1.3:-71209951 | None:intergenic |
| TCCAGCTGATTGCACTTCTC+TGG | 0.339357 | 1.3:+71208826 | MS.gene33563:CDS |
| TGAACTTTCTTGGCAGCTAT+AGG | 0.341277 | 1.3:-71208479 | None:intergenic |
| ACGAATCAGGGGCGCAGATT+TGG | 0.341315 | 1.3:-71207952 | None:intergenic |
| AGCACTTGTGAGGATATCTT+TGG | 0.342890 | 1.3:-71209911 | None:intergenic |
| GTTTACTCAGGCACAGTTGC+TGG | 0.358083 | 1.3:+71209606 | MS.gene33563:CDS |
| CATTATGTTACATACGAATC+AGG | 0.383749 | 1.3:-71207965 | None:intergenic |
| CGGTGATCATAAATCTTTGC+AGG | 0.388607 | 1.3:+71210504 | MS.gene33563:CDS |
| ATGTGCTGCTGTTTCTGAAT+TGG | 0.390146 | 1.3:-71210244 | None:intergenic |
| GCCAAGAAAGTTCACATTGA+TGG | 0.391157 | 1.3:+71208488 | MS.gene33563:CDS |
| GAACTTTCTTGGCAGCTATA+GGG | 0.401291 | 1.3:-71208478 | None:intergenic |
| AATATACCAGTCATATGAAA+TGG | 0.411410 | 1.3:-71209667 | None:intergenic |
| GGAATCTGGCCTCAGAGCTT+TGG | 0.419639 | 1.3:+71207895 | MS.gene33563:CDS |
| CTATCTCCATTTCATATGAC+TGG | 0.452640 | 1.3:+71209661 | MS.gene33563:CDS |
| GATTTGGAGATTGTAGAGAT+TGG | 0.456249 | 1.3:-71207936 | None:intergenic |
| TCACAAACGATGATGGAATC+TGG | 0.460610 | 1.3:+71207881 | None:intergenic |
| GGGGTACAAGCTAACTAAGC+AGG | 0.460697 | 1.3:+71210146 | MS.gene33563:intron |
| CGCTATCATCATGATCAAGT+TGG | 0.466868 | 1.3:-71210483 | None:intergenic |
| TCATATGAAATGGAGATAGA+AGG | 0.477146 | 1.3:-71209657 | None:intergenic |
| GGGTAAGAGTTTAATCAAGA+TGG | 0.486138 | 1.3:+71210167 | MS.gene33563:CDS |
| CCCAGAGAAGTGCAATCAGC+TGG | 0.489447 | 1.3:-71208827 | None:intergenic |
| GTAGGCATGCTTGCGCGGCA+AGG | 0.492258 | 1.3:-71209854 | None:intergenic |
| AACTGTAGGAAAGAGTGCTT+TGG | 0.496602 | 1.3:-71208855 | None:intergenic |
| TAGGCATGCTTGCGCGGCAA+GGG | 0.503124 | 1.3:-71209853 | None:intergenic |
| ACCAGTAAAGCACTTATGAT+AGG | 0.507166 | 1.3:-71209876 | None:intergenic |
| CCAGCTGATTGCACTTCTCT+GGG | 0.509126 | 1.3:+71208827 | MS.gene33563:CDS |
| GCTATCATCATGATCAAGTT+GGG | 0.519152 | 1.3:-71210482 | None:intergenic |
| GGTAATAAGTGGCATAAACA+TGG | 0.524866 | 1.3:+71209230 | MS.gene33563:intron |
| GATTGTAGAGATTGGTGTCA+AGG | 0.525117 | 1.3:-71207928 | None:intergenic |
| ATTATGTTACATACGAATCA+GGG | 0.529718 | 1.3:-71207964 | None:intergenic |
| CACAGTTGCTGGAGCTCGAG+AGG | 0.534617 | 1.3:+71209617 | MS.gene33563:CDS |
| CTGTGAGTCACAGTATTACA+TGG | 0.535793 | 1.3:+71208450 | MS.gene33563:CDS |
| GGTAAGAGTTTAATCAAGAT+GGG | 0.542532 | 1.3:+71210168 | MS.gene33563:CDS |
| AGAGTTTAATCAAGATGGGA+TGG | 0.551266 | 1.3:+71210172 | MS.gene33563:CDS |
| GTAAAGCACTTATGATAGGT+AGG | 0.576862 | 1.3:-71209872 | None:intergenic |
| GATAGGTAGGCATGCTTGCG+CGG | 0.582018 | 1.3:-71209859 | None:intergenic |
| GCATATTTACAGGTAATAAG+TGG | 0.582535 | 1.3:+71209219 | MS.gene33563:intron |
| CAAATCAGCTCTGAGGCGGA+AGG | 0.598776 | 1.3:+71210198 | MS.gene33563:CDS |
| CATACCAGATCAGCAACTGT+AGG | 0.610857 | 1.3:-71208869 | None:intergenic |
| AAGCAACGTTGCAAATCAGA+AGG | 0.614662 | 1.3:+71209953 | MS.gene33563:CDS |
| GATCATAAATCTTTGCAGGA+AGG | 0.617138 | 1.3:+71210508 | MS.gene33563:CDS |
| GGGTACAAGCTAACTAAGCA+GGG | 0.630776 | 1.3:+71210147 | MS.gene33563:CDS |
| GAAGCAAATCAGCTCTGAGG+CGG | 0.633816 | 1.3:+71210194 | MS.gene33563:CDS |
| AAACAAACCAGAAACTGCAT+AGG | 0.644138 | 1.3:-71208519 | None:intergenic |
| GTAATAAGTGGCATAAACAT+GGG | 0.650041 | 1.3:+71209231 | MS.gene33563:CDS |
| CAACTTGATCATGATGATAG+CGG | 0.662382 | 1.3:+71210484 | MS.gene33563:CDS |
| GAGCTTTAACCAAAGCTCTG+AGG | 0.681690 | 1.3:-71207904 | None:intergenic |
| ATAAACATGGGTAACAACTG+TGG | 0.695093 | 1.3:+71209243 | MS.gene33563:CDS |
| TTATGTTACATACGAATCAG+GGG | 0.702173 | 1.3:-71207963 | None:intergenic |
| ATGGAAGCAAATCAGCTCTG+AGG | 0.706358 | 1.3:+71210191 | MS.gene33563:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAAAAAAAAATTAT+TGG | + | chr1.3:71210540-71210559 | MS.gene33563:intron | 0.0% |
| !! | TTACTTAACTATTTCAAAAT+TGG | + | chr1.3:71208405-71208424 | MS.gene33563:intron | 15.0% |
| !! | TTTAATACAAGTTAATGAAA+GGG | - | chr1.3:71208693-71208712 | None:intergenic | 15.0% |
| !!! | TTTTAATACAAGTTAATGAA+AGG | - | chr1.3:71208694-71208713 | None:intergenic | 15.0% |
| !! | GAAAAACATAAATTATACCA+AGG | - | chr1.3:71208561-71208580 | None:intergenic | 20.0% |
| !!! | AATTGATTCTATTTGAAGTT+AGG | + | chr1.3:71208214-71208233 | MS.gene33563:intron | 20.0% |
| !!! | ACCATTTTATTTATTTTGGT+AGG | + | chr1.3:71209007-71209026 | MS.gene33563:intron | 20.0% |
| !!! | AGAGCTTTTATTAATAGATA+TGG | + | chr1.3:71209754-71209773 | MS.gene33563:intron | 20.0% |
| !!! | AGTACAAATTTTTTTCTGAA+TGG | - | chr1.3:71209563-71209582 | None:intergenic | 20.0% |
| !!! | ATAAAAAATAAAGTGCTATC+TGG | - | chr1.3:71210040-71210059 | None:intergenic | 20.0% |
| !!! | ATTTTAATTTTGTAGGTAAG+AGG | + | chr1.3:71210456-71210475 | MS.gene33563:intron | 20.0% |
| !!! | GCAAACCATTTTATTTATTT+TGG | + | chr1.3:71209003-71209022 | MS.gene33563:intron | 20.0% |
| !!! | GTATACGATTTTAATTTTGT+AGG | + | chr1.3:71210449-71210468 | MS.gene33563:intron | 20.0% |
| !!! | GTTAATTTGTTATGATTCAA+AGG | + | chr1.3:71210085-71210104 | MS.gene33563:intron | 20.0% |
| !!! | TAAATAAAATGGTTTGCATT+TGG | - | chr1.3:71209000-71209019 | None:intergenic | 20.0% |
| !!! | TTTGTAAAACTGTTTTTCAT+CGG | + | chr1.3:71208650-71208669 | MS.gene33563:intron | 20.0% |
| !!! | TTTTAATTTTGTAGGTAAGA+GGG | + | chr1.3:71210457-71210476 | MS.gene33563:intron | 20.0% |
| ! | AACATAAATTATACCAAGGA+AGG | - | chr1.3:71208557-71208576 | None:intergenic | 25.0% |
| ! | AATATACCAGTCATATGAAA+TGG | - | chr1.3:71209670-71209689 | None:intergenic | 25.0% |
| ! | AATTTCGGTCTATTTAAAAG+CGG | - | chr1.3:71208136-71208155 | None:intergenic | 25.0% |
| ! | ACATAAATTATACCAAGGAA+GGG | - | chr1.3:71208556-71208575 | None:intergenic | 25.0% |
| ! | ACTCTTTCGGTTAAATAAAA+AGG | - | chr1.3:71209402-71209421 | None:intergenic | 25.0% |
| ! | ACTTCAAATAGAATCAATTC+TGG | - | chr1.3:71208213-71208232 | None:intergenic | 25.0% |
| ! | AGTAATTACATTGTTGGAAT+GGG | + | chr1.3:71208938-71208957 | MS.gene33563:intron | 25.0% |
| ! | ATTAAGATGACTAAAGATGA+GGG | - | chr1.3:71209296-71209315 | None:intergenic | 25.0% |
| ! | ATTATGTTACATACGAATCA+GGG | - | chr1.3:71207967-71207986 | None:intergenic | 25.0% |
| ! | CAATTCTACTAAAAAACAAC+AGG | - | chr1.3:71208181-71208200 | None:intergenic | 25.0% |
| ! | GCCTACCAAAATAAATAAAA+TGG | - | chr1.3:71209011-71209030 | None:intergenic | 25.0% |
| ! | TAGATTAATATCTGACCATT+CGG | + | chr1.3:71209781-71209800 | MS.gene33563:intron | 25.0% |
| ! | TATTAAGATGACTAAAGATG+AGG | - | chr1.3:71209297-71209316 | None:intergenic | 25.0% |
| ! | TCAAAGGTTTATGATTAATC+TGG | + | chr1.3:71210101-71210120 | MS.gene33563:intron | 25.0% |
| ! | TCTTTGAGTAATTACATTGT+TGG | + | chr1.3:71208932-71208951 | MS.gene33563:intron | 25.0% |
| ! | TTATTACCTGTAAATATGCA+TGG | - | chr1.3:71209218-71209237 | None:intergenic | 25.0% |
| !! | TAACTGATTCTCGTAAAATA+GGG | - | chr1.3:71208094-71208113 | None:intergenic | 25.0% |
| !! | TATCACTGTTTAAAACAAGA+CGG | - | chr1.3:71210397-71210416 | None:intergenic | 25.0% |
| !! | TTAACTGATTCTCGTAAAAT+AGG | - | chr1.3:71208095-71208114 | None:intergenic | 25.0% |
| !! | TTTTGTGCTCATAATTGTAA+TGG | + | chr1.3:71209462-71209481 | MS.gene33563:intron | 25.0% |
| !!! | GTATATTTGAAATGCTTTTG+TGG | + | chr1.3:71209683-71209702 | MS.gene33563:intron | 25.0% |
| !!! | TTCACAAATTTTAGTCGTAA+AGG | - | chr1.3:71209347-71209366 | None:intergenic | 25.0% |
| AATTGTAATGGTTTGAGCTA+AGG | + | chr1.3:71209474-71209493 | MS.gene33563:intron | 30.0% | |
| ACTCGTTTATTATGTACGTA+CGG | - | chr1.3:71208037-71208056 | None:intergenic | 30.0% | |
| AGATTAATATCTGACCATTC+GGG | + | chr1.3:71209782-71209801 | MS.gene33563:intron | 30.0% | |
| ATTGTAATGGTTTGAGCTAA+GGG | + | chr1.3:71209475-71209494 | MS.gene33563:intron | 30.0% | |
| CATAAATTATACCAAGGAAG+GGG | - | chr1.3:71208555-71208574 | None:intergenic | 30.0% | |
| CATTATGTTACATACGAATC+AGG | - | chr1.3:71207968-71207987 | None:intergenic | 30.0% | |
| CTAAAATTTGTGAAGAGAGA+AGG | + | chr1.3:71209353-71209372 | MS.gene33563:intron | 30.0% | |
| CTTGCAAATAAAAGACTTTC+AGG | - | chr1.3:71210297-71210316 | None:intergenic | 30.0% | |
| GAGTAATTACATTGTTGGAA+TGG | + | chr1.3:71208937-71208956 | MS.gene33563:intron | 30.0% | |
| GCATATTTACAGGTAATAAG+TGG | + | chr1.3:71209219-71209238 | MS.gene33563:intron | 30.0% | |
| GGTAAGAGTTTAATCAAGAT+GGG | + | chr1.3:71210168-71210187 | MS.gene33563:CDS | 30.0% | |
| GTAAAGAATTAGCATAAGGA+AGG | - | chr1.3:71208800-71208819 | None:intergenic | 30.0% | |
| GTAATAAGTGGCATAAACAT+GGG | + | chr1.3:71209231-71209250 | MS.gene33563:CDS | 30.0% | |
| TCAAATAGAATCAATTCTGG+AGG | - | chr1.3:71208210-71208229 | None:intergenic | 30.0% | |
| TCATATGAAATGGAGATAGA+AGG | - | chr1.3:71209660-71209679 | None:intergenic | 30.0% | |
| TCCTGTAAAGAATTAGCATA+AGG | - | chr1.3:71208804-71208823 | None:intergenic | 30.0% | |
| TCCTTATGCTAATTCTTTAC+AGG | + | chr1.3:71208800-71208819 | MS.gene33563:intron | 30.0% | |
| TGAGTAAACACTGCATAAAA+GGG | - | chr1.3:71209595-71209614 | None:intergenic | 30.0% | |
| TTATGAGCACAAAAATGATG+TGG | - | chr1.3:71209456-71209475 | None:intergenic | 30.0% | |
| TTATGTTACATACGAATCAG+GGG | - | chr1.3:71207966-71207985 | None:intergenic | 30.0% | |
| TTCTGAATGGCAAATATTAG+TGG | - | chr1.3:71209550-71209569 | None:intergenic | 30.0% | |
| ! | AATTTTACGAACACCTTTCA+AGG | - | chr1.3:71209033-71209052 | None:intergenic | 30.0% |
| ! | TTTTTCATCGGATGAAGTTT+TGG | + | chr1.3:71208662-71208681 | MS.gene33563:intron | 30.0% |
| !! | ATATTCAAAAAGCACTTGTG+AGG | - | chr1.3:71209924-71209943 | None:intergenic | 30.0% |
| !! | CTTTTATTTGCAAGAGAAGT+AGG | + | chr1.3:71210303-71210322 | MS.gene33563:CDS | 30.0% |
| AAAACTAAAACTCGAACTGC+AGG | - | chr1.3:71208912-71208931 | None:intergenic | 35.0% | |
| AAACAAACCAGAAACTGCAT+AGG | - | chr1.3:71208522-71208541 | None:intergenic | 35.0% | |
| AAATAGACCGAAATTGCTTC+CGG | + | chr1.3:71208141-71208160 | MS.gene33563:intron | 35.0% | |
| AACAGACATAATACAGAGTG+TGG | + | chr1.3:71210569-71210588 | MS.gene33563:intron | 35.0% | |
| AATGAATAATTTCGTCCAGC+TGG | + | chr1.3:71209181-71209200 | MS.gene33563:intron | 35.0% | |
| AATGTGCCATGCATATTTAC+AGG | + | chr1.3:71209209-71209228 | MS.gene33563:intron | 35.0% | |
| AATTTGTGAAGAGAGAAGGT+AGG | + | chr1.3:71209357-71209376 | MS.gene33563:intron | 35.0% | |
| ACCTATCATAAGTGCTTTAC+TGG | + | chr1.3:71209875-71209894 | MS.gene33563:CDS | 35.0% | |
| AGAGTTTAATCAAGATGGGA+TGG | + | chr1.3:71210172-71210191 | MS.gene33563:CDS | 35.0% | |
| ATAAACATGGGTAACAACTG+TGG | + | chr1.3:71209243-71209262 | MS.gene33563:CDS | 35.0% | |
| CAACTTGATCATGATGATAG+CGG | + | chr1.3:71210484-71210503 | MS.gene33563:CDS | 35.0% | |
| CAGTTAATTACGTGTACGTT+TGG | + | chr1.3:71208108-71208127 | MS.gene33563:intron | 35.0% | |
| CTATCTCCATTTCATATGAC+TGG | + | chr1.3:71209661-71209680 | MS.gene33563:CDS | 35.0% | |
| CTGAGTAAACACTGCATAAA+AGG | - | chr1.3:71209596-71209615 | None:intergenic | 35.0% | |
| GATCATAAATCTTTGCAGGA+AGG | + | chr1.3:71210508-71210527 | MS.gene33563:CDS | 35.0% | |
| GATTAATATCTGACCATTCG+GGG | + | chr1.3:71209783-71209802 | MS.gene33563:intron | 35.0% | |
| GATTCTGACTAATAGTGAGT+TGG | - | chr1.3:71208341-71208360 | None:intergenic | 35.0% | |
| GATTTGGAGATTGTAGAGAT+TGG | - | chr1.3:71207939-71207958 | None:intergenic | 35.0% | |
| GCTATCATCATGATCAAGTT+GGG | - | chr1.3:71210485-71210504 | None:intergenic | 35.0% | |
| GGGTAAGAGTTTAATCAAGA+TGG | + | chr1.3:71210167-71210186 | MS.gene33563:CDS | 35.0% | |
| GGTAATAAGTGGCATAAACA+TGG | + | chr1.3:71209230-71209249 | MS.gene33563:intron | 35.0% | |
| GTACGTACATAATAAACGAG+TGG | + | chr1.3:71208036-71208055 | MS.gene33563:intron | 35.0% | |
| TACTATCAATCCAGGGTTAA+AGG | + | chr1.3:71209807-71209826 | MS.gene33563:intron | 35.0% | |
| TCCATCAATGTGAACTTTCT+TGG | - | chr1.3:71208492-71208511 | None:intergenic | 35.0% | |
| TTGTAATGGTTTGAGCTAAG+GGG | + | chr1.3:71209476-71209495 | MS.gene33563:intron | 35.0% | |
| ! | ACCAGTAAAGCACTTATGAT+AGG | - | chr1.3:71209879-71209898 | None:intergenic | 35.0% |
| ! | AGTGAATGGTGTTTGGAATT+TGG | - | chr1.3:71208312-71208331 | None:intergenic | 35.0% |
| ! | CTTTTATGCAGTGTTTACTC+AGG | + | chr1.3:71209594-71209613 | MS.gene33563:intron | 35.0% |
| ! | GATAAATTTTCTCCTTCGTC+CGG | - | chr1.3:71209524-71209543 | None:intergenic | 35.0% |
| ! | GTAAAGCACTTATGATAGGT+AGG | - | chr1.3:71209875-71209894 | None:intergenic | 35.0% |
| ! | TCTCTTATTTGCACTACTTC+TGG | + | chr1.3:71209072-71209091 | MS.gene33563:intron | 35.0% |
| ! | TTGCAAATCAGAAGGTATGT+TGG | + | chr1.3:71209961-71209980 | MS.gene33563:intron | 35.0% |
| !!! | TTATTTTGGTAGGCCTTGAA+AGG | + | chr1.3:71209017-71209036 | MS.gene33563:intron | 35.0% |
| AAGCAACGTTGCAAATCAGA+AGG | + | chr1.3:71209953-71209972 | MS.gene33563:CDS | 40.0% | |
| ACAGGATAATTGTGCATCTC+CGG | - | chr1.3:71208163-71208182 | None:intergenic | 40.0% | |
| AGCACTTGTGAGGATATCTT+TGG | - | chr1.3:71209914-71209933 | None:intergenic | 40.0% | |
| AGCTTCATCAGAAAACACTG+AGG | - | chr1.3:71208607-71208626 | None:intergenic | 40.0% | |
| CGCTATCATCATGATCAAGT+TGG | - | chr1.3:71210486-71210505 | None:intergenic | 40.0% | |
| CGGTGATCATAAATCTTTGC+AGG | + | chr1.3:71210504-71210523 | MS.gene33563:CDS | 40.0% | |
| CTGTGAGTCACAGTATTACA+TGG | + | chr1.3:71208450-71208469 | MS.gene33563:CDS | 40.0% | |
| GAACTTTCTTGGCAGCTATA+GGG | - | chr1.3:71208481-71208500 | None:intergenic | 40.0% | |
| GACAAGAAGCAGATAGAGTA+AGG | - | chr1.3:71208976-71208995 | None:intergenic | 40.0% | |
| GAGCTATACGACTACTCTTT+CGG | - | chr1.3:71209415-71209434 | None:intergenic | 40.0% | |
| GAGGTAAAGTGAATGGTGTT+TGG | - | chr1.3:71208319-71208338 | None:intergenic | 40.0% | |
| GCCAAGAAAGTTCACATTGA+TGG | + | chr1.3:71208488-71208507 | MS.gene33563:CDS | 40.0% | |
| TGAACTTTCTTGGCAGCTAT+AGG | - | chr1.3:71208482-71208501 | None:intergenic | 40.0% | |
| TTCTTCTGTGTCTCCCAAAA+GGG | + | chr1.3:71210126-71210145 | MS.gene33563:intron | 40.0% | |
| ! | TAGGAGGAGATGGGATTTTA+AGG | + | chr1.3:71209376-71209395 | MS.gene33563:intron | 40.0% |
| ! | TCTGACTAATAGTGAGTTGG+AGG | - | chr1.3:71208338-71208357 | None:intergenic | 40.0% |
| ! | TGAGTTGGAGGTAAAGTGAA+TGG | - | chr1.3:71208326-71208345 | None:intergenic | 40.0% |
| ! | TGCTTTTGTGGCTATATTGC+TGG | + | chr1.3:71209695-71209714 | MS.gene33563:intron | 40.0% |
| ! | TTCTGATTTGCAACGTTGCT+TGG | - | chr1.3:71209954-71209973 | None:intergenic | 40.0% |
| !! | AACTGTAGGAAAGAGTGCTT+TGG | - | chr1.3:71208858-71208877 | None:intergenic | 40.0% |
| !! | ATGTGCTGCTGTTTCTGAAT+TGG | - | chr1.3:71210247-71210266 | None:intergenic | 40.0% |
| !! | GATTGTAGAGATTGGTGTCA+AGG | - | chr1.3:71207931-71207950 | None:intergenic | 40.0% |
| !!! | AGTTAGCTTGTACCCCTTTT+GGG | - | chr1.3:71210142-71210161 | None:intergenic | 40.0% |
| !!! | TAGTTAGCTTGTACCCCTTT+TGG | - | chr1.3:71210143-71210162 | None:intergenic | 40.0% |
| !!! | TTCTGTTTTTTCCCCTTCCT+TGG | + | chr1.3:71208541-71208560 | MS.gene33563:intron | 40.0% |
| ACTACAGCCTATGCAGTTTC+TGG | + | chr1.3:71208512-71208531 | MS.gene33563:CDS | 45.0% | |
| ATCCATGCATTTCACTGGAG+TGG | + | chr1.3:71208067-71208086 | MS.gene33563:intron | 45.0% | |
| ATGGAAGCAAATCAGCTCTG+AGG | + | chr1.3:71210191-71210210 | MS.gene33563:CDS | 45.0% | |
| ATGGCACATTAGAAACCAGC+TGG | - | chr1.3:71209199-71209218 | None:intergenic | 45.0% | |
| CATACCAGATCAGCAACTGT+AGG | - | chr1.3:71208872-71208891 | None:intergenic | 45.0% | |
| CTCTCATCCATGCATTTCAC+TGG | + | chr1.3:71208062-71208081 | MS.gene33563:intron | 45.0% | |
| CTTTCCTACAGTTGCTGATC+TGG | + | chr1.3:71208865-71208884 | MS.gene33563:CDS | 45.0% | |
| GGGTACAAGCTAACTAAGCA+GGG | + | chr1.3:71210147-71210166 | MS.gene33563:CDS | 45.0% | |
| GTTACTCGTTCCTTTAACCC+TGG | - | chr1.3:71209820-71209839 | None:intergenic | 45.0% | |
| GTTCTTCTGTGTCTCCCAAA+AGG | + | chr1.3:71210125-71210144 | MS.gene33563:intron | 45.0% | |
| TCGGGGTTACTATCAATCCA+GGG | + | chr1.3:71209800-71209819 | MS.gene33563:intron | 45.0% | |
| TCTTCTGTGTCTCCCAAAAG+GGG | + | chr1.3:71210127-71210146 | MS.gene33563:intron | 45.0% | |
| TGCATCTCCGGAAGCAATTT+CGG | - | chr1.3:71208151-71208170 | None:intergenic | 45.0% | |
| TTCGGGGTTACTATCAATCC+AGG | + | chr1.3:71209799-71209818 | MS.gene33563:intron | 45.0% | |
| TTGTGAAGAGAGAAGGTAGG+AGG | + | chr1.3:71209360-71209379 | MS.gene33563:intron | 45.0% | |
| ! | ACTCACAGCTGATTTCTCAC+TGG | - | chr1.3:71208438-71208457 | None:intergenic | 45.0% |
| ! | GACGGATTCGTCGAAAAAAG+TGG | - | chr1.3:71210379-71210398 | None:intergenic | 45.0% |
| ! | GAGCTTTAACCAAAGCTCTG+AGG | - | chr1.3:71207907-71207926 | None:intergenic | 45.0% |
| ! | GGATTGATAGTAACCCCGAA+TGG | - | chr1.3:71209799-71209818 | None:intergenic | 45.0% |
| AAACTCGAACTGCAGGAGCA+AGG | - | chr1.3:71208905-71208924 | None:intergenic | 50.0% | |
| AACTCGAACTGCAGGAGCAA+GGG | - | chr1.3:71208904-71208923 | None:intergenic | 50.0% | |
| AGAGAGAAGGTAGGAGGAGA+TGG | + | chr1.3:71209366-71209385 | MS.gene33563:intron | 50.0% | |
| CCAGCTGATTGCACTTCTCT+GGG | + | chr1.3:71208827-71208846 | MS.gene33563:CDS | 50.0% | |
| CCTGAGAGATAGCAGCAAGA+GGG | - | chr1.3:71210632-71210651 | None:intergenic | 50.0% | |
| CGGCAAGGGTGAAGTCATTT+AGG | - | chr1.3:71209842-71209861 | None:intergenic | 50.0% | |
| CTGAGAGATAGCAGCAAGAG+GGG | - | chr1.3:71210631-71210650 | None:intergenic | 50.0% | |
| GAGAGAAGGTAGGAGGAGAT+GGG | + | chr1.3:71209367-71209386 | MS.gene33563:intron | 50.0% | |
| GGGGTACAAGCTAACTAAGC+AGG | + | chr1.3:71210146-71210165 | MS.gene33563:intron | 50.0% | |
| GTCCACTCCAGTGAAATGCA+TGG | - | chr1.3:71208072-71208091 | None:intergenic | 50.0% | |
| GTTTACTCAGGCACAGTTGC+TGG | + | chr1.3:71209606-71209625 | MS.gene33563:CDS | 50.0% | |
| TCCAGCTGATTGCACTTCTC+TGG | + | chr1.3:71208826-71208845 | MS.gene33563:CDS | 50.0% | |
| TGAGCTAAGGGGTGATGAGT+TGG | + | chr1.3:71209487-71209506 | MS.gene33563:intron | 50.0% | |
| ! | TTTTCTCCTTCGTCCGGACT+CGG | - | chr1.3:71209518-71209537 | None:intergenic | 50.0% |
| !! | GAAGCAAATCAGCTCTGAGG+CGG | + | chr1.3:71210194-71210213 | MS.gene33563:CDS | 50.0% |
| CCCTCTTGCTGCTATCTCTC+AGG | + | chr1.3:71210629-71210648 | MS.gene33563:intron | 55.0% | |
| GAACTGCAGGAGCAAGGGAA+GGG | - | chr1.3:71208899-71208918 | None:intergenic | 55.0% | |
| GATAGGTAGGCATGCTTGCG+CGG | - | chr1.3:71209862-71209881 | None:intergenic | 55.0% | |
| GCCTGAGAGATAGCAGCAAG+AGG | - | chr1.3:71210633-71210652 | None:intergenic | 55.0% | |
| GGAATCTGGCCTCAGAGCTT+TGG | + | chr1.3:71207895-71207914 | MS.gene33563:CDS | 55.0% | |
| TGCTGCTATCTCTCAGGCAG+AGG | + | chr1.3:71210635-71210654 | MS.gene33563:intron | 55.0% | |
| TTTCTCCTTCGTCCGGACTC+GGG | - | chr1.3:71209517-71209536 | None:intergenic | 55.0% | |
| ! | ACGAATCAGGGGCGCAGATT+TGG | - | chr1.3:71207955-71207974 | None:intergenic | 55.0% |
| ! | CCCAGAGAAGTGCAATCAGC+TGG | - | chr1.3:71208830-71208849 | None:intergenic | 55.0% |
| ! | TGAGTTGGAGTTCCCGAGTC+CGG | + | chr1.3:71209502-71209521 | MS.gene33563:intron | 55.0% |
| !! | CAAATCAGCTCTGAGGCGGA+AGG | + | chr1.3:71210198-71210217 | MS.gene33563:CDS | 55.0% |
| CACAGTTGCTGGAGCTCGAG+AGG | + | chr1.3:71209617-71209636 | MS.gene33563:CDS | 60.0% | |
| CGAACTGCAGGAGCAAGGGA+AGG | - | chr1.3:71208900-71208919 | None:intergenic | 60.0% | |
| TAGGCATGCTTGCGCGGCAA+GGG | - | chr1.3:71209856-71209875 | None:intergenic | 60.0% | |
| GAGTTCCCGAGTCCGGACGA+AGG | + | chr1.3:71209509-71209528 | MS.gene33563:intron | 65.0% | |
| GTAGGCATGCTTGCGCGGCA+AGG | - | chr1.3:71209857-71209876 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 71207890 | 71210660 | 71207890 | ID=MS.gene33563 |
| chr1.3 | mRNA | 71207890 | 71210660 | 71207890 | ID=MS.gene33563.t1;Parent=MS.gene33563 |
| chr1.3 | exon | 71207890 | 71207972 | 71207890 | ID=MS.gene33563.t1.exon1;Parent=MS.gene33563.t1 |
| chr1.3 | CDS | 71207890 | 71207972 | 71207890 | ID=cds.MS.gene33563.t1;Parent=MS.gene33563.t1 |
| chr1.3 | exon | 71208439 | 71208533 | 71208439 | ID=MS.gene33563.t1.exon2;Parent=MS.gene33563.t1 |
| chr1.3 | CDS | 71208439 | 71208533 | 71208439 | ID=cds.MS.gene33563.t1;Parent=MS.gene33563.t1 |
| chr1.3 | exon | 71208822 | 71208886 | 71208822 | ID=MS.gene33563.t1.exon3;Parent=MS.gene33563.t1 |
| chr1.3 | CDS | 71208822 | 71208886 | 71208822 | ID=cds.MS.gene33563.t1;Parent=MS.gene33563.t1 |
| chr1.3 | exon | 71209231 | 71209274 | 71209231 | ID=MS.gene33563.t1.exon4;Parent=MS.gene33563.t1 |
| chr1.3 | CDS | 71209231 | 71209274 | 71209231 | ID=cds.MS.gene33563.t1;Parent=MS.gene33563.t1 |
| chr1.3 | exon | 71209605 | 71209682 | 71209605 | ID=MS.gene33563.t1.exon5;Parent=MS.gene33563.t1 |
| chr1.3 | CDS | 71209605 | 71209682 | 71209605 | ID=cds.MS.gene33563.t1;Parent=MS.gene33563.t1 |
| chr1.3 | exon | 71209821 | 71209974 | 71209821 | ID=MS.gene33563.t1.exon6;Parent=MS.gene33563.t1 |
| chr1.3 | CDS | 71209821 | 71209974 | 71209821 | ID=cds.MS.gene33563.t1;Parent=MS.gene33563.t1 |
| chr1.3 | exon | 71210147 | 71210324 | 71210147 | ID=MS.gene33563.t1.exon7;Parent=MS.gene33563.t1 |
| chr1.3 | CDS | 71210147 | 71210324 | 71210147 | ID=cds.MS.gene33563.t1;Parent=MS.gene33563.t1 |
| chr1.3 | exon | 71210471 | 71210534 | 71210471 | ID=MS.gene33563.t1.exon8;Parent=MS.gene33563.t1 |
| chr1.3 | CDS | 71210471 | 71210534 | 71210471 | ID=cds.MS.gene33563.t1;Parent=MS.gene33563.t1 |
| chr1.3 | exon | 71210651 | 71210660 | 71210651 | ID=MS.gene33563.t1.exon9;Parent=MS.gene33563.t1 |
| chr1.3 | CDS | 71210651 | 71210660 | 71210651 | ID=cds.MS.gene33563.t1;Parent=MS.gene33563.t1 |
| Gene Sequence |
| Protein sequence |
