AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33648


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33648.t1 MTR_1g029470 98.681 379 5 0 1 379 1 379 0.0 777
MS.gene33648.t1 MTR_1g029460 80.263 380 70 3 1 379 1 376 0.0 608
MS.gene33648.t1 MTR_8g037810 56.369 314 129 2 1 307 1 313 1.55e-117 345
MS.gene33648.t1 MTR_5g004570 63.596 228 78 1 1 223 1 228 4.53e-105 310
MS.gene33648.t1 MTR_5g004600 47.368 95 48 2 221 313 3 97 8.91e-22 91.7
MS.gene33648.t1 MTR_3g027580 48.649 74 37 1 6 78 89 162 2.97e-14 74.3
MS.gene33648.t1 MTR_2g083920 43.662 71 40 0 6 76 70 140 3.51e-14 72.4
MS.gene33648.t1 MTR_4g080350 47.761 67 35 0 2 68 68 134 7.01e-14 72.4
MS.gene33648.t1 MTR_4g023470 53.846 65 30 0 7 71 87 151 7.60e-14 72.8
MS.gene33648.t1 MTR_2g083920 43.662 71 40 0 6 76 70 140 2.60e-13 70.9
MS.gene33648.t1 MTR_8g006430 52.113 71 30 2 5 75 13 79 4.95e-13 70.5
MS.gene33648.t1 MTR_5g065860 42.683 82 47 0 1 82 43 124 1.39e-12 65.1
MS.gene33648.t1 MTR_5g065160 47.143 70 37 0 4 73 74 143 2.25e-12 68.6
MS.gene33648.t1 MTR_5g065160 47.143 70 37 0 4 73 81 150 2.27e-12 68.6
MS.gene33648.t1 MTR_7g109340 47.887 71 37 0 7 77 27 97 2.55e-12 67.8
MS.gene33648.t1 MTR_5g065160 47.143 70 37 0 4 73 81 150 3.05e-12 68.2
MS.gene33648.t1 MTR_5g065160 47.143 70 37 0 4 73 80 149 3.07e-12 68.2
MS.gene33648.t1 MTR_2g014480 45.070 71 38 1 6 75 4 74 1.03e-11 65.9
MS.gene33648.t1 MTR_5g035770 40.426 94 47 2 8 92 27 120 1.39e-11 65.9
MS.gene33648.t1 MTR_1g110310 39.726 73 44 0 8 80 18 90 1.77e-11 65.5
MS.gene33648.t1 MTR_4g023490 50.000 66 32 1 6 71 16 80 8.87e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33648.t1 AT1G77020 70.312 384 104 5 1 379 1 379 0.0 538
MS.gene33648.t1 AT1G76700 55.650 354 142 6 1 340 1 353 2.11e-132 385
MS.gene33648.t1 AT1G21080 52.632 361 156 6 1 348 1 359 2.14e-129 377
MS.gene33648.t1 AT1G21080 56.193 331 128 6 1 325 1 320 2.20e-129 377
MS.gene33648.t1 AT2G21510 51.594 345 156 3 1 334 1 345 1.42e-115 340
MS.gene33648.t1 AT2G21510 51.594 345 156 3 1 334 1 345 1.42e-115 340
MS.gene33648.t1 AT2G21510 51.136 352 154 4 1 334 1 352 8.42e-115 338
MS.gene33648.t1 AT2G21510 51.136 352 154 4 1 334 1 352 8.42e-115 338
MS.gene33648.t1 AT2G21510 54.603 315 135 2 1 307 1 315 6.84e-114 335
MS.gene33648.t1 AT4G39150 54.777 314 134 2 1 307 1 313 9.75e-113 333
MS.gene33648.t1 AT4G39150 54.777 314 134 2 1 307 1 313 9.75e-113 333
MS.gene33648.t1 AT4G39150 54.777 314 134 2 1 307 1 313 9.75e-113 333
MS.gene33648.t1 AT1G21080 47.985 273 128 5 89 348 1 272 1.95e-79 246
MS.gene33648.t1 AT1G28210 47.619 63 33 0 7 69 49 111 2.22e-13 71.2
MS.gene33648.t1 AT1G28210 47.619 63 33 0 7 69 49 111 2.36e-13 71.2
MS.gene33648.t1 AT1G28210 47.619 63 33 0 7 69 49 111 2.68e-13 71.2
MS.gene33648.t1 AT5G48030 48.485 66 34 0 6 71 94 159 3.10e-13 71.2
MS.gene33648.t1 AT2G42750 39.744 78 44 1 6 83 76 150 2.03e-12 68.2
MS.gene33648.t1 AT1G71000 47.887 71 32 2 2 68 5 74 2.72e-12 65.1
MS.gene33648.t1 AT1G59980 42.254 71 41 0 8 78 25 95 5.47e-12 67.0
MS.gene33648.t1 AT1G59980 42.254 71 41 0 8 78 25 95 5.89e-12 67.0
MS.gene33648.t1 AT1G71000 47.887 71 32 2 2 68 5 74 1.12e-11 63.2
MS.gene33648.t1 AT2G33735 42.188 64 37 0 6 69 22 85 1.62e-11 61.6
MS.gene33648.t1 AT2G33735 42.188 64 37 0 6 69 22 85 1.62e-11 61.6
MS.gene33648.t1 AT5G16650 39.024 82 50 0 6 87 11 92 2.90e-11 62.0
MS.gene33648.t1 AT5G16650 39.024 82 50 0 6 87 11 92 2.96e-11 60.8
MS.gene33648.t1 AT5G25530 37.383 107 51 3 6 96 4 110 5.19e-11 63.9
MS.gene33648.t1 AT3G62600 42.254 71 41 0 7 77 27 97 7.07e-11 63.5
MS.gene33648.t1 AT5G06910 44.118 68 38 0 4 71 27 94 7.16e-11 62.8
MS.gene33648.t1 AT1G80030 38.144 97 52 2 6 95 75 170 8.54e-11 63.9
MS.gene33648.t1 AT1G80030 38.144 97 52 2 6 95 75 170 8.54e-11 63.9
MS.gene33648.t1 AT1G80030 38.144 97 52 2 6 95 75 170 8.54e-11 63.9
MS.gene33648.t1 AT1G80030 38.144 97 52 2 6 95 75 170 8.89e-11 63.5

Find 75 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCTTGGAGTTCCATTTC+TGG 0.127930 1.1:+15022629 MS.gene33648:CDS
CTATCGTACCTGATTGAAAA+AGG 0.234257 1.1:-15024146 None:intergenic
GCTGTCTTTGCCTTGCTCTT+TGG 0.268463 1.1:+15021893 MS.gene33648:CDS
TTCGCAATAAAGGACATTTC+TGG 0.268549 1.1:+15022661 MS.gene33648:CDS
AATTCTTGGGAAGATATTTC+AGG 0.290265 1.1:+15023343 MS.gene33648:CDS
GCTACCGCTCTTAAAATTCT+TGG 0.300599 1.1:+15023329 MS.gene33648:CDS
TGGAATTTGTGTGCAGCATT+AGG 0.313416 1.1:-15021141 None:intergenic
GCTGAATGGGTTCGCAATAA+AGG 0.328906 1.1:+15022651 MS.gene33648:CDS
GGATTTGCAGGAGAAGTTAA+AGG 0.339087 1.1:+15021994 MS.gene33648:CDS
GGGAAGAAAGCCCTTTATCT+TGG 0.339487 1.1:+15022615 MS.gene33648:CDS
GAGTTCCATTTCTGGCTGAA+TGG 0.340162 1.1:+15022637 MS.gene33648:CDS
GAAATGGAACTCCAAGATAA+AGG 0.343460 1.1:-15022626 None:intergenic
TCAAAATAGGAAGTCCAAAA+AGG 0.348995 1.1:+15022253 MS.gene33648:intron
AGGAATGGATATGATCGAAA+TGG 0.352486 1.1:+15021293 MS.gene33648:CDS
TGCTGAGTTCTTCTTGAAGT+TGG 0.353241 1.1:-15022845 None:intergenic
TGATGAAAGTGAGGATTTGC+AGG 0.359038 1.1:+15021982 MS.gene33648:CDS
CGCGCTGGTAGAAACCCTTT+TGG 0.371483 1.1:-15022336 None:intergenic
GTGCAGCATTAGGATCGTTT+TGG 0.388129 1.1:-15021131 None:intergenic
AGTTCCATTTCTGGCTGAAT+GGG 0.388274 1.1:+15022638 MS.gene33648:CDS
TTTCTGCTGCCGCAGGGTAT+TGG 0.409022 1.1:+15024250 MS.gene33648:intron
TCTGTTATTGCAGGTGCTAA+AGG 0.409650 1.1:+15023271 MS.gene33648:intron
CCTTGCACACGTTTGTCAAA+TGG 0.414394 1.1:+15022983 MS.gene33648:CDS
TCATATCCATTCCTTTGTAC+TGG 0.423796 1.1:-15021284 None:intergenic
CGAACCCATTCAGCCAGAAA+TGG 0.425167 1.1:-15022642 None:intergenic
CTACCGCTCTTAAAATTCTT+GGG 0.426578 1.1:+15023330 MS.gene33648:CDS
TAATGCTGCACACAAATTCC+AGG 0.435576 1.1:+15021143 MS.gene33648:CDS
CTTTGGAAGTGAATTGTTTG+AGG 0.435919 1.1:+15021910 MS.gene33648:CDS
TTTGGTCACCACGGACATAT+TGG 0.437329 1.1:-15022318 None:intergenic
TTTCAGGAAAAGAATGCAAA+AGG 0.444830 1.1:+15024019 MS.gene33648:intron
TGCTAAAGGAAAACAATGTT+AGG 0.452653 1.1:+15023285 MS.gene33648:CDS
AAATGGAACTCCAAGATAAA+GGG 0.456731 1.1:-15022625 None:intergenic
ATATGTCCGTGGTGACCAAA+AGG 0.463077 1.1:+15022321 MS.gene33648:CDS
ATGGGAAACATTCTGTATCT+AGG 0.465044 1.1:+15021312 MS.gene33648:CDS
AGACAAGCAGCACAAGAACT+AGG 0.468147 1.1:+15022594 MS.gene33648:CDS
GGAATGGATATGATCGAAAT+GGG 0.483252 1.1:+15021294 MS.gene33648:CDS
GCAAGACGGCTTTCTCATGC+AGG 0.493184 1.1:+15022370 MS.gene33648:CDS
AGCAAGGCAAAGACAGCCAT+TGG 0.494950 1.1:-15021887 None:intergenic
ACAGAGTATTACGATATCCT+TGG 0.511167 1.1:+15020908 MS.gene33648:CDS
CCATTTGACAAACGTGTGCA+AGG 0.522458 1.1:-15022983 None:intergenic
TTGCTTCAGATTCTGCGCGC+TGG 0.526941 1.1:-15022351 None:intergenic
GCATCTAGCTGTGGCATCGA+TGG 0.532142 1.1:+15021943 MS.gene33648:CDS
TGCTGCCGCAGGGTATTGGT+AGG 0.537161 1.1:+15024254 MS.gene33648:intron
AGAAACTATGCTTGATCCAA+TGG 0.538193 1.1:+15021871 MS.gene33648:CDS
TCACAGTTGACAGCTGCTAA+AGG 0.548984 1.1:+15022687 MS.gene33648:CDS
AATTGTTTGAGGACTACGTC+GGG 0.554453 1.1:+15021921 MS.gene33648:CDS
GTTGACATGTTACATACTAT+CGG 0.558770 1.1:+15022558 MS.gene33648:CDS
TTGTAATCCCGCATTTGATG+TGG 0.559168 1.1:+15024291 MS.gene33648:CDS
TATGTCCGTGGTGACCAAAA+GGG 0.561024 1.1:+15022322 MS.gene33648:CDS
TCGATGGCTACTTCTGAACT+AGG 0.563331 1.1:+15021959 MS.gene33648:CDS
TCATCATCCACATCAAATGC+GGG 0.564111 1.1:-15024298 None:intergenic
GACAAGCAGCACAAGAACTA+GGG 0.564418 1.1:+15022595 MS.gene33648:CDS
AGTGATCCAGTACAAAGGAA+TGG 0.575083 1.1:+15021278 MS.gene33648:CDS
TTCATCATCCACATCAAATG+CGG 0.576696 1.1:-15024299 None:intergenic
AGCTTTGCGAATTTGATCAT+CGG 0.582814 1.1:-15020948 None:intergenic
TCGCAAAGCTTATTATCACA+AGG 0.590412 1.1:+15020961 MS.gene33648:CDS
CATTTGACAAACGTGTGCAA+GGG 0.591607 1.1:-15022982 None:intergenic
ACACTTTGTTGAATTCCTTG+TGG 0.595314 1.1:+15022931 MS.gene33648:CDS
GCTGTTGATTCTGATGATGA+AGG 0.596459 1.1:+15024064 MS.gene33648:CDS
ATTTGATCATCGGAAGCAGA+AGG 0.597784 1.1:-15020938 None:intergenic
CAATCGGTGAACAATGGTGA+AGG 0.600934 1.1:+15020883 None:intergenic
AGCAAGACATTTAAAACGAG+TGG 0.602834 1.1:+15022864 MS.gene33648:CDS
GGAAAACAATGTTAGGAGAG+AGG 0.610717 1.1:+15023292 MS.gene33648:CDS
ATGTAACATGTCAACTCCAA+AGG 0.611709 1.1:-15022550 None:intergenic
CAATTCACTTCCAAAGAGCA+AGG 0.618269 1.1:-15021903 None:intergenic
TGAACTAGGTGATGAAAGTG+AGG 0.618771 1.1:+15021973 MS.gene33648:CDS
CATCAAATGCGGGATTACAA+AGG 0.620613 1.1:-15024288 None:intergenic
GTACTGGATCACTCAAAACC+TGG 0.623501 1.1:-15021268 None:intergenic
CTACGTCGGGCATCTAGCTG+TGG 0.624538 1.1:+15021934 MS.gene33648:CDS
AAGCAGAAGGAGAAACTCCA+AGG 0.632839 1.1:-15020925 None:intergenic
ATTTGATGTGGATGATGAAG+AGG 0.641347 1.1:+15024303 MS.gene33648:CDS
CTTGTGGAAGTTGAATGTAG+TGG 0.643037 1.1:+15022947 MS.gene33648:CDS
CACTACATTCAACTTCCACA+AGG 0.647745 1.1:-15022946 None:intergenic
GCGCAGAATCTGAAGCAAGA+CGG 0.650712 1.1:+15022356 MS.gene33648:CDS
TTTCTCAGCCAATATGTCCG+TGG 0.656115 1.1:+15022310 MS.gene33648:CDS
GAATTGTTTGAGGACTACGT+CGG 0.677698 1.1:+15021920 MS.gene33648:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATATATTATTATAT+GGG + chr1.1:15021837-15021856 MS.gene33648:intron 0.0%
!! AAAGAAAATATCAATAAGTA+AGG + chr1.1:15022197-15022216 MS.gene33648:intron 15.0%
!! TTAAATAAATAAAGTAGCAT+TGG - chr1.1:15021349-15021368 None:intergenic 15.0%
!!! AACAAAAAAGTAAAACATTT+TGG + chr1.1:15023560-15023579 MS.gene33648:intron 15.0%
!! ACTAAATCACTGTATATAAA+AGG + chr1.1:15021602-15021621 MS.gene33648:intron 20.0%
!! ATGTTTACATATTTGTGTAA+TGG - chr1.1:15024231-15024250 None:intergenic 20.0%
!! ATTATGAGAATTGAAATGAA+AGG + chr1.1:15023223-15023242 MS.gene33648:intron 20.0%
!! CAATTGGCATTTAAATAAAA+GGG - chr1.1:15022747-15022766 None:intergenic 20.0%
!! GAGAATTATATAGTATCTTA+TGG - chr1.1:15023859-15023878 None:intergenic 20.0%
!! TAGTATATATTGTCAAATAG+TGG + chr1.1:15023685-15023704 MS.gene33648:intron 20.0%
!! TTATGAGAATTGAAATGAAA+GGG + chr1.1:15023224-15023243 MS.gene33648:intron 20.0%
!!! ACGTTAAATTTTGGTAAATT+TGG - chr1.1:15023818-15023837 None:intergenic 20.0%
!!! ATTATGTTATTGGTAGATTT+TGG + chr1.1:15021235-15021254 MS.gene33648:intron 20.0%
!!! GTTTTACATTTAATCACAAT+TGG + chr1.1:15024168-15024187 MS.gene33648:intron 20.0%
!!! TTATGTTATTGGTAGATTTT+GGG + chr1.1:15021236-15021255 MS.gene33648:intron 20.0%
! AATCTATATCTCTTCACTTA+AGG + chr1.1:15021796-15021815 MS.gene33648:intron 25.0%
! ACTGTATATAAAAGGTTTGA+AGG + chr1.1:15021610-15021629 MS.gene33648:intron 25.0%
! ATACACTTTCTTATTGTTAC+AGG + chr1.1:15021083-15021102 MS.gene33648:intron 25.0%
! ATATTGTGCACATACTATTT+AGG + chr1.1:15022807-15022826 MS.gene33648:intron 25.0%
! ATTATGCTTTGCTTCAAAAT+AGG + chr1.1:15022240-15022259 MS.gene33648:intron 25.0%
! GCAATTGGCATTTAAATAAA+AGG - chr1.1:15022748-15022767 None:intergenic 25.0%
! GCATTTATAGGATAAGAATT+TGG - chr1.1:15023769-15023788 None:intergenic 25.0%
! GGAATATGGAAATAAATCAT+TGG - chr1.1:15023592-15023611 None:intergenic 25.0%
! GTATCTTATGGTAAAAATAG+AGG - chr1.1:15023847-15023866 None:intergenic 25.0%
! TATGGTAAAAATAGAGGATT+TGG - chr1.1:15023841-15023860 None:intergenic 25.0%
! TTAAGAAGTCTTGCATTTAT+AGG - chr1.1:15023781-15023800 None:intergenic 25.0%
! TTCCTCTATTAACTGATATA+AGG + chr1.1:15023985-15024004 MS.gene33648:intron 25.0%
! TTGTCTTATCACAATGATAT+TGG - chr1.1:15022064-15022083 None:intergenic 25.0%
!! AAAAAACTCAGTCTATGTTT+TGG + chr1.1:15022085-15022104 MS.gene33648:intron 25.0%
!! CATTTGTAGGATAAGAATTT+TGG - chr1.1:15023725-15023744 None:intergenic 25.0%
!! CTATGTATTAACTTGGAATA+TGG - chr1.1:15023606-15023625 None:intergenic 25.0%
!! GAGGTTTATTTGTATTTTCA+AGG + chr1.1:15022107-15022126 MS.gene33648:intron 25.0%
!!! CGTATTAGAAGTGTATTTTT+CGG + chr1.1:15022770-15022789 MS.gene33648:intron 25.0%
!!! TTTTGCACTTGCTTTTTTAT+TGG + chr1.1:15023904-15023923 MS.gene33648:intron 25.0%
!!! TTTTTTATTGGTAACACACA+AGG + chr1.1:15023916-15023935 MS.gene33648:intron 25.0%
AAATGGAACTCCAAGATAAA+GGG - chr1.1:15022628-15022647 None:intergenic 30.0%
AACCTTATAGTTTCATACCA+AGG - chr1.1:15023146-15023165 None:intergenic 30.0%
AATAAGAGAAACTGTGGAAT+TGG - chr1.1:15022174-15022193 None:intergenic 30.0%
AATGCTGCTATGTATTAACT+TGG - chr1.1:15023613-15023632 None:intergenic 30.0%
AATTCTTGGGAAGATATTTC+AGG + chr1.1:15023343-15023362 MS.gene33648:CDS 30.0%
ACCTTATAGTTTCATACCAA+GGG - chr1.1:15023145-15023164 None:intergenic 30.0%
ATGTACTAAATACCGTATTG+CGG - chr1.1:15022447-15022466 None:intergenic 30.0%
ATTGAGATCTGGTGAAAAAT+TGG + chr1.1:15023504-15023523 MS.gene33648:intron 30.0%
CACCTTATATCAGTTAATAG+AGG - chr1.1:15023990-15024009 None:intergenic 30.0%
CTTTCATCTAAGTCCAATTA+TGG - chr1.1:15023470-15023489 None:intergenic 30.0%
GAATGTAGTTGTGGATAAAA+AGG - chr1.1:15023448-15023467 None:intergenic 30.0%
GTTGACATGTTACATACTAT+CGG + chr1.1:15022558-15022577 MS.gene33648:CDS 30.0%
TATCGTACCTGATTGAAAAA+GGG - chr1.1:15024148-15024167 None:intergenic 30.0%
TCAAAATAGGAAGTCCAAAA+AGG + chr1.1:15022253-15022272 MS.gene33648:intron 30.0%
TGCTAAAGGAAAACAATGTT+AGG + chr1.1:15023285-15023304 MS.gene33648:CDS 30.0%
TTAAATAAAAGGGATGCTGA+TGG - chr1.1:15022737-15022756 None:intergenic 30.0%
TTGGACTTAGATGAAAGATA+AGG + chr1.1:15023473-15023492 MS.gene33648:intron 30.0%
TTTCACAATAAGAGAAACTG+TGG - chr1.1:15022180-15022199 None:intergenic 30.0%
TTTCACCAGATCTCAATAAT+CGG - chr1.1:15023501-15023520 None:intergenic 30.0%
TTTCAGGAAAAGAATGCAAA+AGG + chr1.1:15024019-15024038 MS.gene33648:intron 30.0%
! AAAGCTAGCAAGATTTTTGA+AGG + chr1.1:15022285-15022304 MS.gene33648:CDS 30.0%
! AGGATTTGGACGTTAAATTT+TGG - chr1.1:15023827-15023846 None:intergenic 30.0%
! ATATGAGAGTCAACATTTTC+AGG - chr1.1:15022897-15022916 None:intergenic 30.0%
! ATCCTAACATTCAGCTTTTT+AGG + chr1.1:15023395-15023414 MS.gene33648:intron 30.0%
! TATGAGAGTCAACATTTTCA+GGG - chr1.1:15022896-15022915 None:intergenic 30.0%
!! ACAATGACACTTTTGATTGA+AGG + chr1.1:15021448-15021467 MS.gene33648:intron 30.0%
AATAGGAAGTCCAAAAAGGA+AGG + chr1.1:15022257-15022276 MS.gene33648:intron 35.0%
ACACTTTGTTGAATTCCTTG+TGG + chr1.1:15022931-15022950 MS.gene33648:CDS 35.0%
AGAAACTATGCTTGATCCAA+TGG + chr1.1:15021871-15021890 MS.gene33648:CDS 35.0%
AGCTTTGCGAATTTGATCAT+CGG - chr1.1:15020951-15020970 None:intergenic 35.0%
AGGAATGGATATGATCGAAA+TGG + chr1.1:15021293-15021312 MS.gene33648:CDS 35.0%
ATAGGAAGTCCAAAAAGGAA+GGG + chr1.1:15022258-15022277 MS.gene33648:intron 35.0%
ATCACGGAAATTGCATTTGT+AGG - chr1.1:15023738-15023757 None:intergenic 35.0%
ATGGGAAACATTCTGTATCT+AGG + chr1.1:15021312-15021331 MS.gene33648:CDS 35.0%
ATGTAACATGTCAACTCCAA+AGG - chr1.1:15022553-15022572 None:intergenic 35.0%
ATTGAAAAAGGGAGTTCGAT+AGG - chr1.1:15024137-15024156 None:intergenic 35.0%
ATTGTAATCGTTCCGCAATA+CGG + chr1.1:15022432-15022451 MS.gene33648:intron 35.0%
ATTTGATGTGGATGATGAAG+AGG + chr1.1:15024303-15024322 MS.gene33648:CDS 35.0%
CACTTCTAATACGAAGCAAT+TGG - chr1.1:15022763-15022782 None:intergenic 35.0%
CCAATTATGGAATGTAGTTG+TGG - chr1.1:15023457-15023476 None:intergenic 35.0%
CCACAACTACATTCCATAAT+TGG + chr1.1:15023454-15023473 MS.gene33648:intron 35.0%
CTACCGCTCTTAAAATTCTT+GGG + chr1.1:15023330-15023349 MS.gene33648:CDS 35.0%
CTATCGTACCTGATTGAAAA+AGG - chr1.1:15024149-15024168 None:intergenic 35.0%
CTCCTAAAAAGCTGAATGTT+AGG - chr1.1:15023400-15023419 None:intergenic 35.0%
GAAATGGAACTCCAAGATAA+AGG - chr1.1:15022629-15022648 None:intergenic 35.0%
GCTATCACATCTTTATGTGT+CGG + chr1.1:15021532-15021551 MS.gene33648:intron 35.0%
GGAATGGATATGATCGAAAT+GGG + chr1.1:15021294-15021313 MS.gene33648:CDS 35.0%
TACTTGAGCCTAATGTATCA+GGG + chr1.1:15023168-15023187 MS.gene33648:intron 35.0%
TAGCAGTTATAATGACGCTA+TGG + chr1.1:15022479-15022498 MS.gene33648:intron 35.0%
TCACTAATCCCTGATACATT+AGG - chr1.1:15023179-15023198 None:intergenic 35.0%
TCATATCCATTCCTTTGTAC+TGG - chr1.1:15021287-15021306 None:intergenic 35.0%
TCGCAAAGCTTATTATCACA+AGG + chr1.1:15020961-15020980 MS.gene33648:CDS 35.0%
TCTGTATTATTAGCCAGCAA+AGG - chr1.1:15021748-15021767 None:intergenic 35.0%
TTACTTGAGCCTAATGTATC+AGG + chr1.1:15023167-15023186 MS.gene33648:intron 35.0%
TTATCTTGGAGTTCCATTTC+TGG + chr1.1:15022629-15022648 MS.gene33648:CDS 35.0%
TTCATCATCCACATCAAATG+CGG - chr1.1:15024302-15024321 None:intergenic 35.0%
TTCGCAATAAAGGACATTTC+TGG + chr1.1:15022661-15022680 MS.gene33648:CDS 35.0%
! ACAGAGTATTACGATATCCT+TGG + chr1.1:15020908-15020927 MS.gene33648:CDS 35.0%
! AGCAAGACATTTAAAACGAG+TGG + chr1.1:15022864-15022883 MS.gene33648:CDS 35.0%
! CTTTGGAAGTGAATTGTTTG+AGG + chr1.1:15021910-15021929 MS.gene33648:CDS 35.0%
!! AAACTCAGTCTATGTTTTGG+AGG + chr1.1:15022088-15022107 MS.gene33648:intron 35.0%
!! CTTCCCAAGAATTTTAAGAG+CGG - chr1.1:15023336-15023355 None:intergenic 35.0%
!! CTTTTGATTGAAGGTGTGTA+CGG + chr1.1:15021457-15021476 MS.gene33648:intron 35.0%
!! GAATTTGGTGTTGTCAATCA+CGG - chr1.1:15023754-15023773 None:intergenic 35.0%
!! TTTTGAGTGATCCAGTACAA+AGG + chr1.1:15021273-15021292 MS.gene33648:CDS 35.0%
AAAGGCTGCAAGATAAACAC+GGG - chr1.1:15022535-15022554 None:intergenic 40.0%
AATTGTTTGAGGACTACGTC+GGG + chr1.1:15021921-15021940 MS.gene33648:CDS 40.0%
ACTCGTAACTCTGTTATTGC+AGG + chr1.1:15023262-15023281 MS.gene33648:intron 40.0%
ACTTAGACGCGAATTGGTAA+TGG - chr1.1:15021772-15021791 None:intergenic 40.0%
AGTGATCCAGTACAAAGGAA+TGG + chr1.1:15021278-15021297 MS.gene33648:CDS 40.0%
ATTTGATCATCGGAAGCAGA+AGG - chr1.1:15020941-15020960 None:intergenic 40.0%
CAAAGGCTGCAAGATAAACA+CGG - chr1.1:15022536-15022555 None:intergenic 40.0%
CAAGCATAGTTTCTCTGTCA+AGG - chr1.1:15021865-15021884 None:intergenic 40.0%
CAATTCACTTCCAAAGAGCA+AGG - chr1.1:15021906-15021925 None:intergenic 40.0%
CACTACATTCAACTTCCACA+AGG - chr1.1:15022949-15022968 None:intergenic 40.0%
CATCAAATGCGGGATTACAA+AGG - chr1.1:15024291-15024310 None:intergenic 40.0%
CATTTGACAAACGTGTGCAA+GGG - chr1.1:15022985-15023004 None:intergenic 40.0%
CTTGTGGAAGTTGAATGTAG+TGG + chr1.1:15022947-15022966 MS.gene33648:CDS 40.0%
GAATTGTTTGAGGACTACGT+CGG + chr1.1:15021920-15021939 MS.gene33648:CDS 40.0%
GCCCTTGGTATGAAACTATA+AGG + chr1.1:15023141-15023160 MS.gene33648:intron 40.0%
GCTACCGCTCTTAAAATTCT+TGG + chr1.1:15023329-15023348 MS.gene33648:CDS 40.0%
GGAAAACAATGTTAGGAGAG+AGG + chr1.1:15023292-15023311 MS.gene33648:CDS 40.0%
GGATTTGCAGGAGAAGTTAA+AGG + chr1.1:15021994-15022013 MS.gene33648:CDS 40.0%
TAAGGTGATGTGCTTCTTTC+AGG + chr1.1:15024003-15024022 MS.gene33648:intron 40.0%
TAATGCTGCACACAAATTCC+AGG + chr1.1:15021143-15021162 MS.gene33648:CDS 40.0%
TCATCATCCACATCAAATGC+GGG - chr1.1:15024301-15024320 None:intergenic 40.0%
TCATGCAGGTTAGTGAATAG+CGG + chr1.1:15022384-15022403 MS.gene33648:intron 40.0%
TCTGTTATTGCAGGTGCTAA+AGG + chr1.1:15023271-15023290 MS.gene33648:intron 40.0%
TGAACTAGGTGATGAAAGTG+AGG + chr1.1:15021973-15021992 MS.gene33648:CDS 40.0%
TGATGAAAGTGAGGATTTGC+AGG + chr1.1:15021982-15022001 MS.gene33648:CDS 40.0%
TGCTGAGTTCTTCTTGAAGT+TGG - chr1.1:15022848-15022867 None:intergenic 40.0%
TGGAATTTGTGTGCAGCATT+AGG - chr1.1:15021144-15021163 None:intergenic 40.0%
TTGTAATCCCGCATTTGATG+TGG + chr1.1:15024291-15024310 MS.gene33648:CDS 40.0%
TTTGTGACTTAGACGCGAAT+TGG - chr1.1:15021778-15021797 None:intergenic 40.0%
! GCTTTTCTTCCCTTCCTTTT+TGG - chr1.1:15022270-15022289 None:intergenic 40.0%
!! AGGTACCGATTATTGAGATC+TGG + chr1.1:15023493-15023512 MS.gene33648:intron 40.0%
!! AGTTCCATTTCTGGCTGAAT+GGG + chr1.1:15022638-15022657 MS.gene33648:CDS 40.0%
!! GCTGTTGATTCTGATGATGA+AGG + chr1.1:15024064-15024083 MS.gene33648:CDS 40.0%
!!! GGATCGTTTTGGTTTCTATC+AGG - chr1.1:15021123-15021142 None:intergenic 40.0%
!!! TCGAACTCCCTTTTTCAATC+AGG + chr1.1:15024138-15024157 MS.gene33648:CDS 40.0%
AAGCAGAAGGAGAAACTCCA+AGG - chr1.1:15020928-15020947 None:intergenic 45.0%
AGACAAGCAGCACAAGAACT+AGG + chr1.1:15022594-15022613 MS.gene33648:CDS 45.0%
ATATGTCCGTGGTGACCAAA+AGG + chr1.1:15022321-15022340 MS.gene33648:CDS 45.0%
ATTTCCTCAAGAGCCTTTGC+TGG + chr1.1:15021732-15021751 MS.gene33648:intron 45.0%
CCATTTGACAAACGTGTGCA+AGG - chr1.1:15022986-15023005 None:intergenic 45.0%
CCTTGCACACGTTTGTCAAA+TGG + chr1.1:15022983-15023002 MS.gene33648:CDS 45.0%
CGTGTTTATCTTGCAGCCTT+TGG + chr1.1:15022534-15022553 MS.gene33648:intron 45.0%
GACAAGCAGCACAAGAACTA+GGG + chr1.1:15022595-15022614 MS.gene33648:CDS 45.0%
GGGAAGAAAGCCCTTTATCT+TGG + chr1.1:15022615-15022634 MS.gene33648:CDS 45.0%
GTACTGGATCACTCAAAACC+TGG - chr1.1:15021271-15021290 None:intergenic 45.0%
GTGTAACTAGTAGTAGCACC+TGG - chr1.1:15021164-15021183 None:intergenic 45.0%
TAAACATTTCTGCTGCCGCA+GGG + chr1.1:15024244-15024263 MS.gene33648:intron 45.0%
TATGTCCGTGGTGACCAAAA+GGG + chr1.1:15022322-15022341 MS.gene33648:CDS 45.0%
TCACAGTTGACAGCTGCTAA+AGG + chr1.1:15022687-15022706 MS.gene33648:CDS 45.0%
TCGATGGCTACTTCTGAACT+AGG + chr1.1:15021959-15021978 MS.gene33648:CDS 45.0%
TTTCTCAGCCAATATGTCCG+TGG + chr1.1:15022310-15022329 MS.gene33648:CDS 45.0%
TTTGGTCACCACGGACATAT+TGG - chr1.1:15022321-15022340 None:intergenic 45.0%
! AGAAACCCTTTTGGTCACCA+CGG - chr1.1:15022330-15022349 None:intergenic 45.0%
! GCTGAATGGGTTCGCAATAA+AGG + chr1.1:15022651-15022670 MS.gene33648:CDS 45.0%
! GTGCAGCATTAGGATCGTTT+TGG - chr1.1:15021134-15021153 None:intergenic 45.0%
!! ACCAAGGGCATCATGGTATT+GGG - chr1.1:15023130-15023149 None:intergenic 45.0%
!! GAGTTCCATTTCTGGCTGAA+TGG + chr1.1:15022637-15022656 MS.gene33648:CDS 45.0%
!! GATTTTGGGAGAAGCATACC+AGG + chr1.1:15021250-15021269 MS.gene33648:intron 45.0%
!! GTTTCATACCAAGGGCATCA+TGG - chr1.1:15023137-15023156 None:intergenic 45.0%
!! TACCAAGGGCATCATGGTAT+TGG - chr1.1:15023131-15023150 None:intergenic 45.0%
!! GATATTAATATATTATTATA+TGG + chr1.1:15021836-15021855 MS.gene33648:intron 5.0%
!! TATAATTTAAATTATGTTAT+TGG + chr1.1:15021225-15021244 MS.gene33648:intron 5.0%
AAGAGCCTACCAATACCCTG+CGG - chr1.1:15024262-15024281 None:intergenic 50.0%
AGCAAGGCAAAGACAGCCAT+TGG - chr1.1:15021890-15021909 None:intergenic 50.0%
CGAACCCATTCAGCCAGAAA+TGG - chr1.1:15022645-15022664 None:intergenic 50.0%
GCTGTCTTTGCCTTGCTCTT+TGG + chr1.1:15021893-15021912 MS.gene33648:CDS 50.0%
GTAAACATTTCTGCTGCCGC+AGG + chr1.1:15024243-15024262 MS.gene33648:intron 50.0%
TCCCAATACCATGATGCCCT+TGG + chr1.1:15023126-15023145 MS.gene33648:intron 50.0%
TTAGCCAGCAAAGGCTCTTG+AGG - chr1.1:15021739-15021758 None:intergenic 50.0%
! GCGCAGAATCTGAAGCAAGA+CGG + chr1.1:15022356-15022375 MS.gene33648:CDS 50.0%
GCAAGACGGCTTTCTCATGC+AGG + chr1.1:15022370-15022389 MS.gene33648:CDS 55.0%
TTGCTTCAGATTCTGCGCGC+TGG - chr1.1:15022354-15022373 None:intergenic 55.0%
TTTCTGCTGCCGCAGGGTAT+TGG + chr1.1:15024250-15024269 MS.gene33648:intron 55.0%
! GCATCTAGCTGTGGCATCGA+TGG + chr1.1:15021943-15021962 MS.gene33648:CDS 55.0%
!! CGCGCTGGTAGAAACCCTTT+TGG - chr1.1:15022339-15022358 None:intergenic 55.0%
CTACGTCGGGCATCTAGCTG+TGG + chr1.1:15021934-15021953 MS.gene33648:CDS 60.0%
!! TGCTGCCGCAGGGTATTGGT+AGG + chr1.1:15024254-15024273 MS.gene33648:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 15020896 15024348 15020896 ID=MS.gene33648
chr1.1 mRNA 15020896 15024348 15020896 ID=MS.gene33648.t1;Parent=MS.gene33648
chr1.1 exon 15020896 15020982 15020896 ID=MS.gene33648.t1.exon1;Parent=MS.gene33648.t1
chr1.1 CDS 15020896 15020982 15020896 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
chr1.1 exon 15021105 15021164 15021105 ID=MS.gene33648.t1.exon2;Parent=MS.gene33648.t1
chr1.1 CDS 15021105 15021164 15021105 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
chr1.1 exon 15021251 15021333 15021251 ID=MS.gene33648.t1.exon3;Parent=MS.gene33648.t1
chr1.1 CDS 15021251 15021333 15021251 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
chr1.1 exon 15021871 15022015 15021871 ID=MS.gene33648.t1.exon4;Parent=MS.gene33648.t1
chr1.1 CDS 15021871 15022015 15021871 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
chr1.1 exon 15022262 15022391 15022262 ID=MS.gene33648.t1.exon5;Parent=MS.gene33648.t1
chr1.1 CDS 15022262 15022391 15022262 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
chr1.1 exon 15022550 15022708 15022550 ID=MS.gene33648.t1.exon6;Parent=MS.gene33648.t1
chr1.1 CDS 15022550 15022708 15022550 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
chr1.1 exon 15022829 15023004 15022829 ID=MS.gene33648.t1.exon7;Parent=MS.gene33648.t1
chr1.1 CDS 15022829 15023004 15022829 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
chr1.1 exon 15023284 15023364 15023284 ID=MS.gene33648.t1.exon8;Parent=MS.gene33648.t1
chr1.1 CDS 15023284 15023364 15023284 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
chr1.1 exon 15024025 15024159 15024025 ID=MS.gene33648.t1.exon9;Parent=MS.gene33648.t1
chr1.1 CDS 15024025 15024159 15024025 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
chr1.1 exon 15024265 15024348 15024265 ID=MS.gene33648.t1.exon10;Parent=MS.gene33648.t1
chr1.1 CDS 15024265 15024348 15024265 ID=cds.MS.gene33648.t1;Parent=MS.gene33648.t1
Gene Sequence

>MS.gene33648

ATGGTGAAGGAAACAGAGTATTACGATATCCTTGGAGTTTCTCCTTCTGCTTCCGATGATCAAATTCGCAAAGCTTATTATCACAAGGTTCTTTTATATAATTTTATTACTTCAAAATTTCGTTTCTTGTGTTTCTTTTTTTCAAATTATATATTATGAATATTGAAATCACAATTGCAAATTTCACATACACTTTCTTATTGTTACAGGCAAAGCAAGTTCATCCTGATAGAAACCAAAACGATCCTAATGCTGCACACAAATTCCAGGTGCTACTACTAGTTACACTATTAAATCTATAATTATAATAATTGATAGAATAATTATAATATAATTTAAATTATGTTATTGGTAGATTTTGGGAGAAGCATACCAGGTTTTGAGTGATCCAGTACAAAGGAATGGATATGATCGAAATGGGAAACATTCTGTATCTAGGTAGCTACACATCCAATGCTACTTTATTTATTTAATTATTATTATTATTATTATTATTATTATTATTAATTATTATATATATCTCGACAAATATCTGTGTTGTGAGATTCTGTCACAATGACACTTTTGATTGAAGGTGTGTACGGATGCGACAATGAGACATGTGATTACATTTAATTCAATCACTTCAAATTTTAAGCTATCACATCTTTATGTGTCGGTCTCACTTGTGTACGCATTTGTGTCTGTGCTTCATATGTGAGATATGACTAAATCACTGTATATAAAAGGTTTGAAGGATTCGTATATAGATTGAGTATTAGAAGTGAACACTTGTTGAAATAGTGTACTAGAGTTTCTATTTTTGTTGCTATTTGATTTGATACTCATTATAGTTAATTTCCTCAAGAGCCTTTGCTGGCTAATAATACAGAGCCATTACCAATTCGCGTCTAAGTCACAAATCTATATCTCTTCACTTAAGGTGAAGATGTTTTCGCAAGATATTAATATATTATTATATGGGTTCCTTGACAGAGAAACTATGCTTGATCCAATGGCTGTCTTTGCCTTGCTCTTTGGAAGTGAATTGTTTGAGGACTACGTCGGGCATCTAGCTGTGGCATCGATGGCTACTTCTGAACTAGGTGATGAAAGTGAGGATTTGCAGGAGAAGTTAAAGGTAAGCGTGTTTTGAAATTCAGTTTTCAATGTAACTTTGTTTTTGCCAATATCATTGTGATAAGACAAAAAAAAACTCAGTCTATGTTTTGGAGGTTTATTTGTATTTTCAAGGTTCTTTTTATACGTTTCTAGAACACAATAAGTAGCAAAACTCCAATTCCACAGTTTCTCTTATTGTGAAAGAAAATATCAATAAGTAAGGATCTTTTTAATGAATTTTACATTATGCTTTGCTTCAAAATAGGAAGTCCAAAAAGGAAGGGAAGAAAAGCTAGCAAGATTTTTGAAGGATTTTCTCAGCCAATATGTCCGTGGTGACCAAAAGGGTTTCTACCAGCGCGCAGAATCTGAAGCAAGACGGCTTTCTCATGCAGGTTAGTGAATAGCGGCTATAACGTAGTGAAATTTAAACAAATTGTAATCGTTCCGCAATACGGTATTTAGTACATAGTTTTGTTAAATAGCAGTTATAATGACGCTATGGCAATGTATCGACTATATTACTTACTAGTTACCCGTGTTTATCTTGCAGCCTTTGGAGTTGACATGTTACATACTATCGGCTATATATACTCAAGACAAGCAGCACAAGAACTAGGGAAGAAAGCCCTTTATCTTGGAGTTCCATTTCTGGCTGAATGGGTTCGCAATAAAGGACATTTCTGGAAATCACAGTTGACAGCTGCTAAAGGTATAATGAAAGACATCTCAATTCTCCATCAGCATCCCTTTTATTTAAATGCCAATTGCTTCGTATTAGAAGTGTATTTTTCGGAACAATTTTTGATCATATTGTGCACATACTATTTAGGTGCTTTTCAGTTGCTCCAACTTCAAGAAGAACTCAGCAAGACATTTAAAACGAGTGGTAGTTGCCCTGAAAATGTTGACTCTCATATTCGTCTTAATAAAGACACTTTGTTGAATTCCTTGTGGAAGTTGAATGTAGTGGACATAGAAGTAACCCTTGCACACGTTTGTCAAATGGTGAGTTCTAATGTGTTTTAATTATATATGATAAAACATTGCATGCTTTTCTGTACGTGTAATCTGATATAAGTAGTTCGTCAGCAAACATGTTATTGTATTCAATATTCAGTGCTTCTTGTCCCAATACCATGATGCCCTTGGTATGAAACTATAAGGTTCTTACTTGAGCCTAATGTATCAGGGATTAGTGATTGTGACTTTTAGATACGACTTCTATTATGAGAATTGAAATGAAAGGGCTATAGAAGATTCTGACTCGTAACTCTGTTATTGCAGGTGCTAAAGGAAAACAATGTTAGGAGAGAGGAACTTAAAGTTCGAGCTACCGCTCTTAAAATTCTTGGGAAGATATTTCAGGTGCACATTTTAACTTATATAGCATTAAGTATCCTAACATTCAGCTTTTTAGGAGCGACTAATTATTTCTTTATATCAATCCTTTTTATCCACAACTACATTCCATAATTGGACTTAGATGAAAGATAAGGTACCGATTATTGAGATCTGGTGAAAAATTGGATTGAATATCTTCAAAACATAGTACTTTTCTCGAACAAAAAAGTAAAACATTTTGGTTTTCACCAATGATTTATTTCCATATTCCAAGTTAATACATAGCAGCATTATATAGTAGAACAGTGTTTGAACAAATCATTATTGTTTTGCAATATGCAATTTAGTATATATTGTCAAATAGTGGCTATAATGCAGTTTCCAAAATTCTTATCCTACAAATGCAATTTCCGTGATTGACAACACCAAATTCTTATCCTATAAATGCAAGACTTCTTAAACTATTAACAATCACCAAATTTACCAAAATTTAACGTCCAAATCCTCTATTTTTACCATAAGATACTATATAATTCTCTATATTTTAAAATTAAAAATAATTTTTTTGCACTTGCTTTTTTATTGGTAACACACAAGGAATTTAAGCAAGTTATCATATAGTAACAGTGATAAGAAACTTATTTTTCCTCTATTAACTGATATAAGGTGATGTGCTTCTTTCAGGAAAAGAATGCAAAAGGAGAAACGTTGAAGAAGAAACTCGCTGTTGATTCTGATGATGAAGGAAGCAGCTCTGATTCATCAGACGATGAATCATCACATAGAGCACTAACCTATCGAACTCCCTTTTTCAATCAGGTACGATAGTTTTACATTTAATCACAATTGGTATCTACATGTGAGTGTTTTCATAAGTGTTGACACTTCCATTACACAAATATGTAAACATTTCTGCTGCCGCAGGGTATTGGTAGGCTCTTCAAATGCCTTTGTAATCCCGCATTTGATGTGGATGATGAAGAGGAGATAGTTTACAAAAGCAAATGA

Protein sequence

>MS.gene33648.t1

MVKETEYYDILGVSPSASDDQIRKAYYHKAKQVHPDRNQNDPNAAHKFQILGEAYQVLSDPVQRNGYDRNGKHSVSRETMLDPMAVFALLFGSELFEDYVGHLAVASMATSELGDESEDLQEKLKEVQKGREEKLARFLKDFLSQYVRGDQKGFYQRAESEARRLSHAAFGVDMLHTIGYIYSRQAAQELGKKALYLGVPFLAEWVRNKGHFWKSQLTAAKGAFQLLQLQEELSKTFKTSGSCPENVDSHIRLNKDTLLNSLWKLNVVDIEVTLAHVCQMVLKENNVRREELKVRATALKILGKIFQEKNAKGETLKKKLAVDSDDEGSSSDSSDDESSHRALTYRTPFFNQGIGRLFKCLCNPAFDVDDEEEIVYKSK