Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024992.t1 | XP_013453268.2 | 98.5 | 401 | 6 | 0 | 1 | 401 | 1 | 401 | 5.10E-217 | 763.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024992.t1 | Q8GYX8 | 75.1 | 402 | 95 | 4 | 1 | 401 | 1 | 398 | 1.4e-159 | 563.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024992.t1 | A0A396HMW6 | 98.5 | 401 | 6 | 0 | 1 | 401 | 1 | 401 | 3.6e-217 | 763.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene024992 | MS.gene40160 | PPI |
MS.gene006610 | MS.gene024992 | PPI |
MS.gene024992 | MS.gene028573 | PPI |
MS.gene031697 | MS.gene024992 | PPI |
MS.gene024992 | MS.gene026672 | PPI |
MS.gene024992 | MS.gene045585 | PPI |
MS.gene065945 | MS.gene024992 | PPI |
MS.gene93157 | MS.gene024992 | PPI |
MS.gene31858 | MS.gene024992 | PPI |
MS.gene024992 | MS.gene065944 | PPI |
MS.gene024992 | MS.gene33649 | PPI |
MS.gene024992 | MS.gene33648 | PPI |
MS.gene024992 | MS.gene31857 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024992.t1 | MTR_5g004570 | 99.123 | 228 | 2 | 0 | 1 | 228 | 1 | 228 | 4.67e-169 | 473 |
MS.gene024992.t1 | MTR_1g029470 | 59.375 | 320 | 123 | 3 | 1 | 320 | 1 | 313 | 1.43e-137 | 398 |
MS.gene024992.t1 | MTR_8g037810 | 59.062 | 320 | 127 | 2 | 1 | 318 | 1 | 318 | 7.32e-133 | 384 |
MS.gene024992.t1 | MTR_5g004600 | 97.714 | 175 | 4 | 0 | 227 | 401 | 4 | 178 | 9.93e-125 | 358 |
MS.gene024992.t1 | MTR_1g029460 | 54.140 | 314 | 137 | 3 | 1 | 313 | 1 | 308 | 4.28e-117 | 347 |
MS.gene024992.t1 | MTR_3g027580 | 52.857 | 70 | 33 | 0 | 6 | 75 | 89 | 158 | 4.86e-16 | 79.7 |
MS.gene024992.t1 | MTR_4g023470 | 58.462 | 65 | 27 | 0 | 7 | 71 | 87 | 151 | 4.23e-15 | 77.0 |
MS.gene024992.t1 | MTR_4g080350 | 35.659 | 129 | 79 | 3 | 2 | 129 | 68 | 193 | 9.54e-15 | 75.1 |
MS.gene024992.t1 | MTR_2g083920 | 38.793 | 116 | 67 | 3 | 6 | 120 | 70 | 182 | 2.01e-14 | 73.6 |
MS.gene024992.t1 | MTR_2g083920 | 38.793 | 116 | 67 | 3 | 6 | 120 | 70 | 182 | 3.84e-14 | 73.6 |
MS.gene024992.t1 | MTR_8g006430 | 50.704 | 71 | 31 | 2 | 5 | 75 | 13 | 79 | 1.19e-13 | 72.4 |
MS.gene024992.t1 | MTR_5g012530 | 45.977 | 87 | 38 | 3 | 6 | 84 | 12 | 97 | 1.88e-13 | 72.4 |
MS.gene024992.t1 | MTR_2g104030 | 38.889 | 108 | 62 | 3 | 5 | 112 | 69 | 172 | 3.80e-13 | 71.2 |
MS.gene024992.t1 | MTR_3g087030 | 47.222 | 72 | 37 | 1 | 4 | 75 | 80 | 150 | 7.27e-13 | 70.1 |
MS.gene024992.t1 | MTR_5g035770 | 45.833 | 72 | 39 | 0 | 8 | 79 | 27 | 98 | 7.36e-13 | 70.1 |
MS.gene024992.t1 | MTR_1g110310 | 40.860 | 93 | 46 | 2 | 8 | 91 | 18 | 110 | 7.63e-13 | 70.1 |
MS.gene024992.t1 | MTR_7g109340 | 39.362 | 94 | 50 | 1 | 7 | 93 | 27 | 120 | 1.61e-12 | 68.6 |
MS.gene024992.t1 | MTR_3g108020 | 41.000 | 100 | 47 | 3 | 6 | 93 | 4 | 103 | 2.07e-12 | 68.2 |
MS.gene024992.t1 | MTR_2g014480 | 45.070 | 71 | 38 | 1 | 6 | 75 | 4 | 74 | 2.76e-12 | 67.8 |
MS.gene024992.t1 | MTR_5g065160 | 33.577 | 137 | 76 | 3 | 4 | 125 | 80 | 216 | 2.89e-12 | 68.2 |
MS.gene024992.t1 | MTR_5g065160 | 33.577 | 137 | 76 | 3 | 4 | 125 | 81 | 217 | 3.14e-12 | 68.2 |
MS.gene024992.t1 | MTR_5g065160 | 36.522 | 115 | 59 | 2 | 4 | 104 | 81 | 195 | 4.01e-12 | 68.2 |
MS.gene024992.t1 | MTR_5g065160 | 36.522 | 115 | 59 | 2 | 4 | 104 | 74 | 188 | 4.28e-12 | 67.8 |
MS.gene024992.t1 | MTR_4g015840 | 45.070 | 71 | 38 | 1 | 6 | 75 | 4 | 74 | 5.42e-12 | 67.0 |
MS.gene024992.t1 | MTR_7g092380 | 50.000 | 64 | 32 | 0 | 8 | 71 | 24 | 87 | 6.30e-12 | 65.9 |
MS.gene024992.t1 | MTR_2g014470 | 46.479 | 71 | 37 | 1 | 6 | 75 | 4 | 74 | 1.48e-11 | 65.5 |
MS.gene024992.t1 | MTR_1g052110 | 40.230 | 87 | 49 | 1 | 8 | 91 | 40 | 126 | 3.78e-11 | 63.9 |
MS.gene024992.t1 | MTR_4g023490 | 51.515 | 66 | 31 | 1 | 6 | 71 | 16 | 80 | 6.33e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024992.t1 | AT1G21080 | 74.937 | 395 | 92 | 5 | 1 | 394 | 1 | 389 | 0.0 | 594 |
MS.gene024992.t1 | AT1G21080 | 73.515 | 404 | 91 | 5 | 1 | 394 | 1 | 398 | 0.0 | 593 |
MS.gene024992.t1 | AT1G76700 | 76.562 | 384 | 85 | 4 | 1 | 383 | 1 | 380 | 0.0 | 578 |
MS.gene024992.t1 | AT1G21080 | 71.336 | 307 | 82 | 4 | 89 | 394 | 1 | 302 | 4.78e-154 | 437 |
MS.gene024992.t1 | AT1G77020 | 60.802 | 324 | 124 | 2 | 1 | 323 | 1 | 322 | 9.32e-142 | 409 |
MS.gene024992.t1 | AT4G39150 | 56.615 | 325 | 137 | 2 | 1 | 323 | 1 | 323 | 9.50e-132 | 382 |
MS.gene024992.t1 | AT4G39150 | 56.615 | 325 | 137 | 2 | 1 | 323 | 1 | 323 | 9.50e-132 | 382 |
MS.gene024992.t1 | AT4G39150 | 56.615 | 325 | 137 | 2 | 1 | 323 | 1 | 323 | 9.50e-132 | 382 |
MS.gene024992.t1 | AT2G21510 | 55.346 | 318 | 140 | 1 | 1 | 316 | 1 | 318 | 6.79e-128 | 372 |
MS.gene024992.t1 | AT2G21510 | 55.346 | 318 | 140 | 1 | 1 | 316 | 1 | 318 | 6.79e-128 | 372 |
MS.gene024992.t1 | AT2G21510 | 55.346 | 318 | 140 | 1 | 1 | 316 | 1 | 318 | 6.93e-128 | 372 |
MS.gene024992.t1 | AT2G21510 | 55.346 | 318 | 140 | 1 | 1 | 316 | 1 | 318 | 6.93e-128 | 372 |
MS.gene024992.t1 | AT2G21510 | 55.346 | 318 | 140 | 1 | 1 | 316 | 1 | 318 | 1.07e-127 | 371 |
MS.gene024992.t1 | AT1G59980 | 41.935 | 93 | 45 | 2 | 8 | 91 | 25 | 117 | 2.52e-14 | 74.3 |
MS.gene024992.t1 | AT1G59980 | 41.935 | 93 | 45 | 2 | 8 | 91 | 25 | 117 | 2.78e-14 | 74.3 |
MS.gene024992.t1 | AT2G42750 | 37.069 | 116 | 69 | 3 | 6 | 120 | 76 | 188 | 8.79e-14 | 72.4 |
MS.gene024992.t1 | AT5G48030 | 51.515 | 66 | 32 | 0 | 6 | 71 | 94 | 159 | 1.00e-13 | 72.8 |
MS.gene024992.t1 | AT1G59725 | 46.575 | 73 | 37 | 1 | 6 | 76 | 4 | 76 | 1.08e-13 | 72.0 |
MS.gene024992.t1 | AT5G25530 | 38.532 | 109 | 47 | 3 | 6 | 96 | 4 | 110 | 1.76e-13 | 71.6 |
MS.gene024992.t1 | AT1G28210 | 50.000 | 62 | 31 | 0 | 7 | 68 | 49 | 110 | 4.21e-13 | 70.9 |
MS.gene024992.t1 | AT1G28210 | 50.000 | 62 | 31 | 0 | 7 | 68 | 49 | 110 | 4.31e-13 | 70.9 |
MS.gene024992.t1 | AT1G28210 | 50.000 | 62 | 31 | 0 | 7 | 68 | 49 | 110 | 4.53e-13 | 70.9 |
MS.gene024992.t1 | AT1G10350 | 48.000 | 75 | 37 | 2 | 6 | 78 | 4 | 78 | 1.26e-12 | 68.9 |
MS.gene024992.t1 | AT2G22360 | 40.426 | 94 | 49 | 2 | 4 | 91 | 84 | 176 | 2.15e-12 | 68.9 |
MS.gene024992.t1 | AT1G80030 | 36.154 | 130 | 72 | 4 | 6 | 135 | 75 | 193 | 2.28e-12 | 68.9 |
MS.gene024992.t1 | AT1G80030 | 36.154 | 130 | 72 | 4 | 6 | 135 | 75 | 193 | 2.28e-12 | 68.9 |
MS.gene024992.t1 | AT1G80030 | 36.154 | 130 | 72 | 4 | 6 | 135 | 75 | 193 | 2.28e-12 | 68.9 |
MS.gene024992.t1 | AT1G80030 | 38.318 | 107 | 62 | 3 | 6 | 112 | 75 | 177 | 2.44e-12 | 68.9 |
MS.gene024992.t1 | AT3G08910 | 45.333 | 75 | 40 | 1 | 6 | 79 | 4 | 78 | 2.96e-12 | 67.8 |
MS.gene024992.t1 | AT4G28480 | 46.479 | 71 | 37 | 1 | 6 | 75 | 4 | 74 | 4.72e-12 | 66.6 |
MS.gene024992.t1 | AT2G20560 | 46.479 | 71 | 37 | 1 | 6 | 75 | 4 | 74 | 5.85e-12 | 67.0 |
MS.gene024992.t1 | AT4G28480 | 46.479 | 71 | 37 | 1 | 6 | 75 | 4 | 74 | 6.03e-12 | 67.0 |
MS.gene024992.t1 | AT5G01390 | 44.444 | 72 | 39 | 1 | 6 | 76 | 4 | 75 | 7.27e-12 | 65.1 |
MS.gene024992.t1 | AT5G01390 | 44.444 | 72 | 39 | 1 | 6 | 76 | 4 | 75 | 9.13e-12 | 65.1 |
MS.gene024992.t1 | AT3G47940 | 44.156 | 77 | 41 | 1 | 6 | 80 | 4 | 80 | 1.19e-11 | 65.9 |
MS.gene024992.t1 | AT5G25530 | 43.750 | 80 | 36 | 2 | 6 | 76 | 4 | 83 | 1.63e-11 | 65.5 |
MS.gene024992.t1 | AT5G01390 | 44.444 | 72 | 39 | 1 | 6 | 76 | 4 | 75 | 1.69e-11 | 64.7 |
MS.gene024992.t1 | AT2G35720 | 43.210 | 81 | 43 | 2 | 6 | 83 | 15 | 95 | 1.98e-11 | 65.9 |
MS.gene024992.t1 | AT1G68370 | 39.785 | 93 | 47 | 2 | 8 | 91 | 19 | 111 | 2.35e-11 | 65.5 |
MS.gene024992.t1 | AT5G01390 | 44.444 | 72 | 39 | 1 | 6 | 76 | 4 | 75 | 2.85e-11 | 64.7 |
MS.gene024992.t1 | AT3G12170 | 37.363 | 91 | 54 | 1 | 4 | 91 | 9 | 99 | 4.95e-11 | 63.2 |
MS.gene024992.t1 | AT1G24120 | 37.234 | 94 | 50 | 2 | 8 | 92 | 22 | 115 | 4.99e-11 | 64.7 |
MS.gene024992.t1 | AT3G12170 | 37.363 | 91 | 54 | 1 | 4 | 91 | 45 | 135 | 5.47e-11 | 63.5 |
MS.gene024992.t1 | AT4G39960 | 37.234 | 94 | 52 | 2 | 4 | 91 | 83 | 175 | 6.13e-11 | 64.3 |
MS.gene024992.t1 | AT4G39960 | 37.234 | 94 | 52 | 2 | 4 | 91 | 83 | 175 | 6.13e-11 | 64.3 |
MS.gene024992.t1 | AT4G21180 | 45.333 | 75 | 36 | 3 | 1 | 71 | 91 | 164 | 8.23e-11 | 64.3 |
MS.gene024992.t1 | AT4G21180 | 45.333 | 75 | 36 | 3 | 1 | 71 | 11 | 84 | 9.05e-11 | 63.9 |
Find 103 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGATTGACCTGAAAATTT+TGG | 0.135158 | 5.3:-147227 | None:intergenic |
TGCACGTAGTTCTTCTTTCT+TGG | 0.176561 | 5.3:-155819 | None:intergenic |
GGAGCAGGTCTGTGGGCACC+TGG | 0.248868 | 5.3:-156334 | None:intergenic |
TACACCAGTACTTGAAGATT+TGG | 0.283792 | 5.3:-156066 | None:intergenic |
CTTTGTTTCCCTGGACATAC+TGG | 0.285874 | 5.3:-148852 | None:intergenic |
TATGATGCACATGGCAAATC+TGG | 0.306958 | 5.3:+147404 | MS.gene024992:CDS |
CACCTGTTGCCGCTGTAACT+TGG | 0.313148 | 5.3:-149384 | None:intergenic |
AGCAGGTCTGTGGGCACCTG+GGG | 0.316213 | 5.3:-156332 | None:intergenic |
AATTTATGTACTGCTTTGTT+TGG | 0.332629 | 5.3:-155996 | None:intergenic |
GGGCAGCAAGAGGGTCATTT+GGG | 0.335034 | 5.3:-147206 | None:intergenic |
CTAAACCACTCAGCAATAAA+AGG | 0.342495 | 5.3:-149337 | None:intergenic |
TGGGCAGCAAGAGGGTCATT+TGG | 0.353660 | 5.3:-147207 | None:intergenic |
GTGGAGGCCCCACACTTTGC+AGG | 0.354651 | 5.3:+156271 | MS.gene024992:CDS |
CCATTGATGCCATGGCTAAC+TGG | 0.362537 | 5.3:-147595 | None:intergenic |
AGGCTTGTAGAGATACTAAA+AGG | 0.364783 | 5.3:+148820 | MS.gene024992:CDS |
AACTCTTGGTAAAATCTTCC+AGG | 0.368732 | 5.3:+155859 | MS.gene024992:CDS |
GCAGGTCTGTGGGCACCTGG+GGG | 0.371126 | 5.3:-156331 | None:intergenic |
AGCTTTCTTAATCTCAGATT+CGG | 0.380678 | 5.3:-147025 | None:intergenic |
ACCTGTTGCCGCTGTAACTT+GGG | 0.383531 | 5.3:-149383 | None:intergenic |
GTTGTCATTATACAGCTTAT+GGG | 0.384762 | 5.3:+149230 | MS.gene024992:intron |
GAGCAGGTCTGTGGGCACCT+GGG | 0.389447 | 5.3:-156333 | None:intergenic |
AGGTCTGTGGGCACCTGGGG+GGG | 0.396726 | 5.3:-156329 | None:intergenic |
CATAAGCTTGCCTTTGAGTT+GGG | 0.400101 | 5.3:-147385 | None:intergenic |
GAACTACGTGCACGAGCAAA+AGG | 0.400470 | 5.3:+155830 | MS.gene024992:CDS |
AAGTGTGGGGCCTCCACGTA+GGG | 0.400490 | 5.3:-156265 | None:intergenic |
CAAAGTCTTCTTTGTTTCCC+TGG | 0.407211 | 5.3:-148861 | None:intergenic |
TCATAAGCTTGCCTTTGAGT+TGG | 0.415070 | 5.3:-147386 | None:intergenic |
CAGGTCTGTGGGCACCTGGG+GGG | 0.417169 | 5.3:-156330 | None:intergenic |
TCTTTCCCGTGTCTGTCAAA+TGG | 0.421026 | 5.3:+155683 | MS.gene024992:CDS |
GAAGATTTGGGTGAGGTACT+AGG | 0.424180 | 5.3:-156053 | None:intergenic |
ACACCAGTACTTGAAGATTT+GGG | 0.429890 | 5.3:-156065 | None:intergenic |
GTATTCTTCAAGCTCTTCTT+CGG | 0.430532 | 5.3:-155592 | None:intergenic |
TCGTACCTGCATTGGACAGC+CGG | 0.441407 | 5.3:-148909 | None:intergenic |
TCCCAAGTTACAGCGGCAAC+AGG | 0.444241 | 5.3:+149382 | MS.gene024992:CDS |
TCTTCATATCCTCCTGCAGT+TGG | 0.446808 | 5.3:-155542 | None:intergenic |
TGCTGGTTGGAGCAGGTCTG+TGG | 0.446816 | 5.3:-156342 | None:intergenic |
CCAGTTAGCCATGGCATCAA+TGG | 0.450422 | 5.3:+147595 | MS.gene024992:CDS |
ACACCATCATCAATCCTTGC+TGG | 0.451831 | 5.3:-156359 | None:intergenic |
CAATCCTTGCTGGTTGGAGC+AGG | 0.456091 | 5.3:-156349 | None:intergenic |
ACAGGCAAGGCAAGTGCATC+CGG | 0.467108 | 5.3:+147176 | MS.gene024992:intron |
CATGGCATCAATGGCTTCCA+TGG | 0.469034 | 5.3:+147604 | MS.gene024992:CDS |
AACCCATGCTGTCGCATCGC+AGG | 0.483341 | 5.3:+156091 | MS.gene024992:CDS |
GATTGCAGCAGGATCAATAA+TGG | 0.492454 | 5.3:-147528 | None:intergenic |
TAAGAAAGCTTATTACATCA+AGG | 0.495025 | 5.3:+147038 | MS.gene024992:CDS |
ATCTCAGATTCGGATGCGGT+TGG | 0.495393 | 5.3:-147015 | None:intergenic |
GAGTTGGGTCACTGAGAACT+TGG | 0.499446 | 5.3:-147370 | None:intergenic |
AAAGCAGTACATAAATTGAA+TGG | 0.499865 | 5.3:+156002 | MS.gene024992:CDS |
GCAAAAGGGTTGAAAACTCT+TGG | 0.501287 | 5.3:+155845 | MS.gene024992:CDS |
GCTGGTTGGAGCAGGTCTGT+GGG | 0.501375 | 5.3:-156341 | None:intergenic |
AGGCAGGCAGCAAAAGAGCT+AGG | 0.503290 | 5.3:+149289 | MS.gene024992:CDS |
TTAGGGCATCGTACCTGCAT+TGG | 0.506072 | 5.3:-148917 | None:intergenic |
CTTCCGCCAGGTTGTTCAGA+AGG | 0.520281 | 5.3:+148786 | MS.gene024992:intron |
TCACCCAAATCTTCAAGTAC+TGG | 0.532073 | 5.3:+156062 | MS.gene024992:CDS |
CTGAGTGGTTTAGAAACAAA+GGG | 0.533228 | 5.3:+149347 | MS.gene024992:CDS |
CAGACTCAACCAGTATGTCC+AGG | 0.533241 | 5.3:+148843 | MS.gene024992:CDS |
AAGAAACAACTCAGTTCAGA+AGG | 0.534697 | 5.3:+155561 | MS.gene024992:CDS |
TTCAGAAGGAGAGAGAAGAA+AGG | 0.535912 | 5.3:+148800 | MS.gene024992:CDS |
CTTAATCTCAGATTCGGATG+CGG | 0.535962 | 5.3:-147019 | None:intergenic |
GTTGATATGTTGAATACCAT+TGG | 0.536608 | 5.3:+149253 | MS.gene024992:CDS |
AGCATGGCAAAGATTGCAGC+AGG | 0.536765 | 5.3:-147539 | None:intergenic |
ATGCAGAAGCTGAAGTAGCC+CGG | 0.542752 | 5.3:+148890 | MS.gene024992:CDS |
TAGACGGTTAAGACAGCCAA+TGG | 0.543269 | 5.3:+155954 | MS.gene024992:intron |
AATTGCATTGATCCAACTGC+AGG | 0.548793 | 5.3:+155530 | MS.gene024992:CDS |
AAAGTGTGGGGCCTCCACGT+AGG | 0.549144 | 5.3:-156266 | None:intergenic |
CATCATCAATCCTTGCTGGT+TGG | 0.551719 | 5.3:-156355 | None:intergenic |
CGTACCTGCATTGGACAGCC+GGG | 0.553498 | 5.3:-148908 | None:intergenic |
CTCTCTGTGGAAGCTTAATG+TGG | 0.565211 | 5.3:+155644 | MS.gene024992:CDS |
AGCGAATACTATGACGTGCT+TGG | 0.565955 | 5.3:+146985 | MS.gene024992:CDS |
GTAGCCCGGCTGTCCAATGC+AGG | 0.566818 | 5.3:+148904 | MS.gene024992:CDS |
GCTTAATGTGGCTGACATTG+AGG | 0.568707 | 5.3:+155656 | MS.gene024992:CDS |
TTGTCATTATACAGCTTATG+GGG | 0.568921 | 5.3:+149231 | MS.gene024992:intron |
GCACCTGCGATGCGACAGCA+TGG | 0.568969 | 5.3:-156094 | None:intergenic |
TGGCTACATATACGCAAGGC+AGG | 0.571362 | 5.3:+149273 | MS.gene024992:CDS |
AACAACCATTTGACAGACAC+GGG | 0.573149 | 5.3:-155688 | None:intergenic |
AATTGCATGCCTGCAAAGTG+TGG | 0.575193 | 5.3:-156280 | None:intergenic |
GCTGAGTGGTTTAGAAACAA+AGG | 0.575329 | 5.3:+149346 | MS.gene024992:CDS |
TTCTCAGTGACCCAACTCAA+AGG | 0.583766 | 5.3:+147375 | MS.gene024992:CDS |
GGAAAGATCAATCATGGTGA+AGG | 0.584644 | 5.3:+146960 | None:intergenic |
GGCAGGCAGCAAAAGAGCTA+GGG | 0.591181 | 5.3:+149290 | MS.gene024992:CDS |
AAAATTGCAAGACAAAATGC+GGG | 0.593137 | 5.3:+147661 | MS.gene024992:CDS |
TTGACAGACACGGGAAAGAG+TGG | 0.595512 | 5.3:-155679 | None:intergenic |
TGCATTGATCCAACTGCAGG+AGG | 0.600589 | 5.3:+155533 | MS.gene024992:CDS |
AATTTGACTACAACTTCCCT+AGG | 0.603259 | 5.3:+156299 | MS.gene024992:CDS |
AAACAACCATTTGACAGACA+CGG | 0.605275 | 5.3:-155689 | None:intergenic |
ATATATAGGCCAGTTAGCCA+TGG | 0.607750 | 5.3:+147586 | MS.gene024992:CDS |
CATGGAAGCCATTGATGCCA+TGG | 0.610809 | 5.3:-147603 | None:intergenic |
AATTAATGATTGACTCTCTG+TGG | 0.612175 | 5.3:+155631 | MS.gene024992:CDS |
AACTACGTGCACGAGCAAAA+GGG | 0.613702 | 5.3:+155831 | MS.gene024992:CDS |
AGACGGTTAAGACAGCCAAT+GGG | 0.619753 | 5.3:+155955 | MS.gene024992:intron |
AGGCAAGCTTATGATGCACA+TGG | 0.629597 | 5.3:+147395 | MS.gene024992:CDS |
ATTGCATGCCTGCAAAGTGT+GGG | 0.632304 | 5.3:-156279 | None:intergenic |
CACCTGCGATGCGACAGCAT+GGG | 0.633397 | 5.3:-156093 | None:intergenic |
AGTACTTGAAGATTTGGGTG+AGG | 0.635864 | 5.3:-156060 | None:intergenic |
AGACTCAACCAGTATGTCCA+GGG | 0.639373 | 5.3:+148844 | MS.gene024992:CDS |
CCTTGCGTATATGTAGCCAA+TGG | 0.645015 | 5.3:-149269 | None:intergenic |
AGTGTGGGGCCTCCACGTAG+GGG | 0.652232 | 5.3:-156264 | None:intergenic |
CCATTGGCTACATATACGCA+AGG | 0.657826 | 5.3:+149269 | MS.gene024992:CDS |
CAGACCTGCTCCAACCAGCA+AGG | 0.663412 | 5.3:+156345 | MS.gene024992:CDS |
AGAAACAACTCAGTTCAGAA+GGG | 0.671630 | 5.3:+155562 | MS.gene024992:CDS |
AATGTAGAGCCCCTACGTGG+AGG | 0.675024 | 5.3:+156255 | MS.gene024992:intron |
CATCAAATCCCAAGTTACAG+CGG | 0.686887 | 5.3:+149375 | MS.gene024992:CDS |
ATGAATGTAGAGCCCCTACG+TGG | 0.707929 | 5.3:+156252 | MS.gene024992:intron |
TTGCATGCCTGCAAAGTGTG+GGG | 0.711237 | 5.3:-156278 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 146973 | 156372 | 146973 | ID=MS.gene024992 |
chr5.3 | mRNA | 146973 | 156372 | 146973 | ID=MS.gene024992.t1;Parent=MS.gene024992 |
chr5.3 | exon | 146973 | 147059 | 146973 | ID=MS.gene024992.t1.exon1;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 146973 | 147059 | 146973 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
chr5.3 | exon | 147180 | 147239 | 147180 | ID=MS.gene024992.t1.exon2;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 147180 | 147239 | 147180 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
chr5.3 | exon | 147353 | 147435 | 147353 | ID=MS.gene024992.t1.exon3;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 147353 | 147435 | 147353 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
chr5.3 | exon | 147523 | 147682 | 147523 | ID=MS.gene024992.t1.exon4;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 147523 | 147682 | 147523 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
chr5.3 | exon | 148796 | 148925 | 148796 | ID=MS.gene024992.t1.exon5;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 148796 | 148925 | 148796 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
chr5.3 | exon | 149245 | 149403 | 149245 | ID=MS.gene024992.t1.exon6;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 149245 | 149403 | 149245 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
chr5.3 | exon | 155526 | 155704 | 155526 | ID=MS.gene024992.t1.exon7;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 155526 | 155704 | 155526 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
chr5.3 | exon | 155800 | 155880 | 155800 | ID=MS.gene024992.t1.exon8;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 155800 | 155880 | 155800 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
chr5.3 | exon | 155957 | 156112 | 155957 | ID=MS.gene024992.t1.exon9;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 155957 | 156112 | 155957 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
chr5.3 | exon | 156262 | 156372 | 156262 | ID=MS.gene024992.t1.exon10;Parent=MS.gene024992.t1 |
chr5.3 | CDS | 156262 | 156372 | 156262 | ID=cds.MS.gene024992.t1;Parent=MS.gene024992.t1 |
Gene Sequence |
Protein sequence |