AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34399

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34399.t1 MTR_1g102720 99.528 212 1 0 1 212 2 213 1.51e-160 442
MS.gene34399.t1 MTR_7g095690 71.292 209 55 2 9 212 3 211 2.32e-109 312
MS.gene34399.t1 MTR_5g098250 36.150 213 128 1 8 212 1 213 1.08e-39 135
MS.gene34399.t1 MTR_5g098250 36.150 213 128 1 8 212 2 214 1.14e-39 135
MS.gene34399.t1 MTR_3g060210 32.178 202 132 2 8 208 12 209 2.77e-32 116
MS.gene34399.t1 MTR_3g072600 27.778 144 101 2 65 205 70 213 2.54e-14 69.3
MS.gene34399.t1 MTR_8g088940 28.082 146 100 2 65 205 62 207 1.44e-12 64.3
MS.gene34399.t1 MTR_8g088980 28.571 140 95 2 71 205 19 158 3.45e-12 62.4
MS.gene34399.t1 MTR_2g007210 23.913 184 132 4 26 205 23 202 1.89e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34399.t1 AT3G22845 80.374 214 40 2 1 212 1 214 5.42e-129 362
MS.gene34399.t1 AT3G22845 76.866 134 29 2 1 132 1 134 1.22e-71 216
MS.gene34399.t1 AT3G07680 32.512 203 136 1 10 212 7 208 6.99e-33 118
MS.gene34399.t1 AT1G57620 25.701 214 144 6 1 205 1 208 4.73e-16 73.9
MS.gene34399.t1 AT1G09580 27.941 204 132 4 10 205 17 213 1.58e-15 72.8
MS.gene34399.t1 AT1G21900 23.116 199 142 4 15 205 17 212 6.57e-12 62.8

Find 48 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGACAAATTTCAATTTA+AGG 0.133646 1.2:-76445694 MS.gene34399:CDS
TACGAAGGGGATACCGTTTC+GGG 0.172344 1.2:-76446957 MS.gene34399:CDS
CATGTAGAACATACCATCTT+TGG 0.243131 1.2:+76445563 None:intergenic
CAGATGTTCCCTTGATATCT+TGG 0.293679 1.2:+76445715 None:intergenic
AATTTATACATTCCGTGTAC+TGG 0.328863 1.2:+76445669 None:intergenic
TTGATGGTTTGCAGAGCATT+TGG 0.346873 1.2:-76445383 MS.gene34399:intron
ACGGTCTCAGGTGTTGAGTA+TGG 0.356849 1.2:+76445633 None:intergenic
TTACGAAGGGGATACCGTTT+CGG 0.363134 1.2:-76446958 MS.gene34399:CDS
CAAGATATCAAGGGAACATC+TGG 0.407155 1.2:-76445714 MS.gene34399:CDS
TGCTGAGCTCAGAGAGGCAT+TGG 0.456147 1.2:-76445341 MS.gene34399:CDS
ATTTATACATTCCGTGTACT+GGG 0.462322 1.2:+76445670 None:intergenic
TATCTGCAGGTAACATCTCC+TGG 0.475966 1.2:-76445750 MS.gene34399:intron
CACTGCAAGTCATTTACATC+AGG 0.480273 1.2:-76445008 MS.gene34399:CDS
TCACCCTGGCATTGATTTCA+CGG 0.481893 1.2:-76446892 MS.gene34399:intron
TAATGTTGTCCAAGATATCA+AGG 0.485566 1.2:-76445724 MS.gene34399:CDS
GAAATCAATGCCAGGGTGAT+CGG 0.508098 1.2:+76446896 None:intergenic
ATGCCACTGACTTGCTGAAA+AGG 0.511254 1.2:+76444983 None:intergenic
CAATTTAAGGCCCCAGTACA+CGG 0.513678 1.2:-76445681 MS.gene34399:CDS
GAGCATGACCTTGCCAAAGA+TGG 0.530671 1.2:-76445576 MS.gene34399:intron
GTTTCTTTCTATATCCATGT+TGG 0.530932 1.2:-76445612 MS.gene34399:CDS
CGGTCTCAGGTGTTGAGTAT+GGG 0.533708 1.2:+76445634 None:intergenic
ATATAGAAAGAAACGGTCTC+AGG 0.535926 1.2:+76445621 None:intergenic
CGGAACTCCAGAAAATATCA+TGG 0.549085 1.2:+76446916 None:intergenic
ATGAGTATGTGCTTTACGAA+GGG 0.567800 1.2:-76446971 MS.gene34399:CDS
TTGGCAAGGTCATGCTCAGA+GGG 0.569730 1.2:+76445582 None:intergenic
AAAAGAGAAACGCGAAGATG+TGG 0.573730 1.2:-76447076 MS.gene34399:CDS
GACAACAAAATTCCCCGAAA+CGG 0.580687 1.2:+76446944 None:intergenic
CGTGTTATCTTCTACACTGT+CGG 0.581579 1.2:-76445060 MS.gene34399:CDS
CTTACCGTGAAATCAATGCC+AGG 0.583610 1.2:+76446888 None:intergenic
CACTAACAGCAGCCAACAGA+AGG 0.587296 1.2:+76445031 None:intergenic
TCTTGGACAACATTACCTCC+AGG 0.591309 1.2:+76445732 None:intergenic
TATGAGTATGTGCTTTACGA+AGG 0.595805 1.2:-76446972 MS.gene34399:CDS
CAGAGGGAATATGACCAACA+TGG 0.605526 1.2:+76445598 None:intergenic
AACATGGATATAGAAAGAAA+CGG 0.606163 1.2:+76445614 None:intergenic
TGTCGGAGAGTACCTTCTGT+TGG 0.624122 1.2:-76445043 MS.gene34399:CDS
ACTTGAGAGCTCGAGATGCA+AGG 0.627861 1.2:-76445294 MS.gene34399:CDS
GAGAAACGCGAAGATGTGGA+TGG 0.628470 1.2:-76447072 MS.gene34399:CDS
AATGTTGTCCAAGATATCAA+GGG 0.636335 1.2:-76445723 MS.gene34399:CDS
TTCTGGAGTTCCGATCACCC+TGG 0.637663 1.2:-76446906 MS.gene34399:CDS
TGAGTATGTGCTTTACGAAG+GGG 0.643837 1.2:-76446970 MS.gene34399:CDS
AGAACATACCATCTTTGGCA+AGG 0.653070 1.2:+76445568 None:intergenic
TTTATACATTCCGTGTACTG+GGG 0.658699 1.2:+76445671 None:intergenic
TTACCGTGAAATCAATGCCA+GGG 0.659563 1.2:+76446889 None:intergenic
TTTGGCAAGGTCATGCTCAG+AGG 0.659698 1.2:+76445581 None:intergenic
TGATGGAGGGGACTCAAACA+CGG 0.671358 1.2:+76444956 None:intergenic
ACGAAGGGGATACCGTTTCG+GGG 0.686401 1.2:-76446956 MS.gene34399:CDS
TAAAATTGCTGAGCTCAGAG+AGG 0.737003 1.2:-76445347 MS.gene34399:CDS
CTGCAGGTAACATCTCCTGG+AGG 0.743481 1.2:-76445747 MS.gene34399:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATGATTTATGAAATTAT+TGG - chr1.2:76445289-76445308 MS.gene34399:CDS 10.0%
!! TTATGATTTATGAAATTATT+GGG - chr1.2:76445290-76445309 MS.gene34399:CDS 10.0%
!! ATCAAAATAATAACAAATGA+TGG + chr1.2:76446175-76446194 None:intergenic 15.0%
!! TATGATTTATGAAATTATTG+GGG - chr1.2:76445291-76445310 MS.gene34399:CDS 15.0%
!!! TATTTTATTTTCCTATGTTT+TGG - chr1.2:76446620-76446639 MS.gene34399:intron 15.0%
!! AAAACTTAATCACATTTAAG+TGG + chr1.2:76445571-76445590 None:intergenic 20.0%
!! AATTCAACAAATTATGAACT+GGG + chr1.2:76445272-76445291 None:intergenic 20.0%
!! ACAAAACAATATGAAAATCT+GGG + chr1.2:76446243-76446262 None:intergenic 20.0%
!! ACTTTGTATGATTTAATGAA+TGG - chr1.2:76445605-76445624 MS.gene34399:CDS 20.0%
!! AGTAAGTAAGAATTTAAGAA+GGG + chr1.2:76446929-76446948 None:intergenic 20.0%
!! ATGATTTAATGAATGGTTAT+TGG - chr1.2:76445612-76445631 MS.gene34399:CDS 20.0%
!! ATTCATTAAATCATACAAAG+TGG + chr1.2:76445606-76445625 None:intergenic 20.0%
!! TAATTCAACAAATTATGAAC+TGG + chr1.2:76445273-76445292 None:intergenic 20.0%
!! TACAAAACAATATGAAAATC+TGG + chr1.2:76446244-76446263 None:intergenic 20.0%
!! TGAATATAGAATTGAAGTTT+AGG - chr1.2:76445444-76445463 MS.gene34399:intron 20.0%
!! TTGTTCCTATAATATAATAC+TGG + chr1.2:76446143-76446162 None:intergenic 20.0%
!!! CAGCAATTTTAACATTAATT+GGG + chr1.2:76446693-76446712 None:intergenic 20.0%
!!! GGAAAAAATGGTTTTTTTTA+GGG - chr1.2:76445337-76445356 MS.gene34399:CDS 20.0%
!!! TCAGCAATTTTAACATTAAT+TGG + chr1.2:76446694-76446713 None:intergenic 20.0%
! AACACTTCAACAAATGAATA+CGG + chr1.2:76446544-76446563 None:intergenic 25.0%
! AACATGGATATAGAAAGAAA+CGG + chr1.2:76446438-76446457 None:intergenic 25.0%
! AAGATAGTTAATGTAGGAAT+AGG - chr1.2:76445853-76445872 MS.gene34399:intron 25.0%
! AATTGATATAATGCAGCTTA+AGG + chr1.2:76445548-76445567 None:intergenic 25.0%
! AGATAGTTAATGTAGGAATA+GGG - chr1.2:76445854-76445873 MS.gene34399:intron 25.0%
! ATCAAAATTGCACAGAAAAA+GGG + chr1.2:76445208-76445227 None:intergenic 25.0%
! CTTGAGAATAAATCCATTTA+GGG + chr1.2:76445976-76445995 None:intergenic 25.0%
! GAGTAAGTAAGAATTTAAGA+AGG + chr1.2:76446930-76446949 None:intergenic 25.0%
! GGTAAAAGATAAACACTTAA+AGG - chr1.2:76445878-76445897 MS.gene34399:intron 25.0%
! GTTTACAATAATGTTACAGA+AGG + chr1.2:76445654-76445673 None:intergenic 25.0%
! TATCAAAATTGCACAGAAAA+AGG + chr1.2:76445209-76445228 None:intergenic 25.0%
! TGGAGACAAATTTCAATTTA+AGG - chr1.2:76446355-76446374 MS.gene34399:intron 25.0%
! TTGAGAATAAATCCATTTAG+GGG + chr1.2:76445975-76445994 None:intergenic 25.0%
!! AATTTAAGAAGGGTACAAAT+AGG + chr1.2:76446919-76446938 None:intergenic 25.0%
!! CTACTTTGAAAATTCAATTG+TGG - chr1.2:76446829-76446848 MS.gene34399:intron 25.0%
!!! AAGTTTTTGTTTATGCCTAT+AGG - chr1.2:76445476-76445495 MS.gene34399:intron 25.0%
!!! GGGAAAAAATGGTTTTTTTT+AGG - chr1.2:76445336-76445355 MS.gene34399:CDS 25.0%
!!! TTTTTTTAGGGTGTTTAAGA+GGG - chr1.2:76445349-76445368 MS.gene34399:CDS 25.0%
!!! TTTTTTTTAGGGTGTTTAAG+AGG - chr1.2:76445348-76445367 MS.gene34399:CDS 25.0%
AATGTTGTCCAAGATATCAA+GGG - chr1.2:76446326-76446345 MS.gene34399:intron 30.0%
AATTTATACATTCCGTGTAC+TGG + chr1.2:76446383-76446402 None:intergenic 30.0%
ACCATCAAAGTTTAAAAGGA+AGG + chr1.2:76446654-76446673 None:intergenic 30.0%
ACGCTTGACTATATTGTTAT+TGG - chr1.2:76446047-76446066 MS.gene34399:intron 30.0%
AGTAGAACAATGAAAGTTGA+TGG + chr1.2:76446808-76446827 None:intergenic 30.0%
ATTTATACATTCCGTGTACT+GGG + chr1.2:76446382-76446401 None:intergenic 30.0%
GAAAATATAATCAAGCCAAC+AGG + chr1.2:76445526-76445545 None:intergenic 30.0%
GCAAACCATCAAAGTTTAAA+AGG + chr1.2:76446658-76446677 None:intergenic 30.0%
GCAGATAACTGCAAAAAATT+AGG + chr1.2:76446286-76446305 None:intergenic 30.0%
GCTTGAGAATAAATCCATTT+AGG + chr1.2:76445977-76445996 None:intergenic 30.0%
GTTTCTTTCTATATCCATGT+TGG - chr1.2:76446437-76446456 MS.gene34399:intron 30.0%
TAATGTTGTCCAAGATATCA+AGG - chr1.2:76446325-76446344 MS.gene34399:intron 30.0%
TCAATTTGATCAATCCATGT+TGG - chr1.2:76445766-76445785 MS.gene34399:intron 30.0%
TGACTGAAGATAGTTAATGT+AGG - chr1.2:76445847-76445866 MS.gene34399:intron 30.0%
TTGTGAACGTATGTGATATA+TGG - chr1.2:76446867-76446886 MS.gene34399:intron 30.0%
! ACATTTCTTTTTCCCCATTT+CGG - chr1.2:76446892-76446911 MS.gene34399:intron 30.0%
! ACTATATTGTTATTGGCTGT+GGG - chr1.2:76446054-76446073 MS.gene34399:intron 30.0%
! CTTTTGTATATAGCAAACTG+CGG - chr1.2:76446004-76446023 MS.gene34399:intron 30.0%
! TGTATTTATGCCTATTTTGC+TGG - chr1.2:76445915-76445934 MS.gene34399:intron 30.0%
! TTGGTCTTTAGTTTACCTAT+AGG + chr1.2:76445494-76445513 None:intergenic 30.0%
! TTTGTATTTTGCTTTGGTGA+GGG - chr1.2:76445316-76445335 MS.gene34399:CDS 30.0%
!!! AATTTTTTGCAGTTATCTGC+AGG - chr1.2:76446286-76446305 MS.gene34399:intron 30.0%
!!! TTTCCTATGTTTTGGTTATC+TGG - chr1.2:76446628-76446647 MS.gene34399:intron 30.0%
AACAAATTATGAACTGGGCA+AGG + chr1.2:76445267-76445286 None:intergenic 35.0%
AACAATATAGTCAAGCGTCA+AGG + chr1.2:76446045-76446064 None:intergenic 35.0%
AATATCAGCACCAGCAAAAT+AGG + chr1.2:76445928-76445947 None:intergenic 35.0%
AATGGTTATTGGTGAATCCT+TGG - chr1.2:76445623-76445642 MS.gene34399:CDS 35.0%
AATTGAAGTTTAGGTGTCCA+AGG - chr1.2:76445453-76445472 MS.gene34399:intron 35.0%
ATATAGAAAGAAACGGTCTC+AGG + chr1.2:76446431-76446450 None:intergenic 35.0%
ATGAGTATGTGCTTTACGAA+GGG - chr1.2:76445078-76445097 MS.gene34399:CDS 35.0%
CAAGAAGTAAGTCAGGTAAA+TGG + chr1.2:76446574-76446593 None:intergenic 35.0%
CATGTAGAACATACCATCTT+TGG + chr1.2:76446489-76446508 None:intergenic 35.0%
CATTTCTGATGAATGATCTG+AGG - chr1.2:76446595-76446614 MS.gene34399:intron 35.0%
GAAAAGAAAACTCCTTACTG+TGG + chr1.2:76446786-76446805 None:intergenic 35.0%
GAAATGTCAAGAAGTAAGTC+AGG + chr1.2:76446581-76446600 None:intergenic 35.0%
GATCTTTGTTAGTGCGTAAT+AGG - chr1.2:76445737-76445756 MS.gene34399:CDS 35.0%
GCTGGCCAGTATTATATTAT+AGG - chr1.2:76446135-76446154 MS.gene34399:intron 35.0%
GGCATAAACAAAAACTTCCT+TGG + chr1.2:76445473-76445492 None:intergenic 35.0%
TAGTTAATGTAGGAATAGGG+AGG - chr1.2:76445857-76445876 MS.gene34399:intron 35.0%
TATGAGTATGTGCTTTACGA+AGG - chr1.2:76445077-76445096 MS.gene34399:CDS 35.0%
TTTATACATTCCGTGTACTG+GGG + chr1.2:76446381-76446400 None:intergenic 35.0%
! CTCATCTAGTACTGAAACTT+TGG - chr1.2:76445673-76445692 MS.gene34399:CDS 35.0%
! GACTATATTGTTATTGGCTG+TGG - chr1.2:76446053-76446072 MS.gene34399:intron 35.0%
! GCCTTCCTTTTAAACTTTGA+TGG - chr1.2:76446650-76446669 MS.gene34399:intron 35.0%
! GTTTGTATTTTGCTTTGGTG+AGG - chr1.2:76445315-76445334 MS.gene34399:CDS 35.0%
! TCGTTGACCATGATATTTTC+TGG - chr1.2:76445126-76445145 MS.gene34399:intron 35.0%
AAAACCTCCTTCAAGCATAG+GGG + chr1.2:76446097-76446116 None:intergenic 40.0%
AAAAGAGAAACGCGAAGATG+TGG - chr1.2:76444973-76444992 MS.gene34399:CDS 40.0%
ACAAAACCTCCTTCAAGCAT+AGG + chr1.2:76446099-76446118 None:intergenic 40.0%
ACAAACACACTGATCCAACA+TGG + chr1.2:76445783-76445802 None:intergenic 40.0%
AGAACATACCATCTTTGGCA+AGG + chr1.2:76446484-76446503 None:intergenic 40.0%
AGGCCAGATAACCAAAACAT+AGG + chr1.2:76446634-76446653 None:intergenic 40.0%
CAAAACCTCCTTCAAGCATA+GGG + chr1.2:76446098-76446117 None:intergenic 40.0%
CAAGATATCAAGGGAACATC+TGG - chr1.2:76446335-76446354 MS.gene34399:intron 40.0%
CACTGCAAGTCATTTACATC+AGG - chr1.2:76447041-76447060 MS.gene34399:CDS 40.0%
CAGATGTTCCCTTGATATCT+TGG + chr1.2:76446337-76446356 None:intergenic 40.0%
CGGAACTCCAGAAAATATCA+TGG + chr1.2:76445136-76445155 None:intergenic 40.0%
CGTGTTATCTTCTACACTGT+CGG - chr1.2:76446989-76447008 MS.gene34399:CDS 40.0%
CTTTATGTTGTGCCCCTAAA+TGG - chr1.2:76445960-76445979 MS.gene34399:intron 40.0%
GACAACAAAATTCCCCGAAA+CGG + chr1.2:76445108-76445127 None:intergenic 40.0%
GGTACAAATAGGACCGAAAT+GGG + chr1.2:76446908-76446927 None:intergenic 40.0%
GGTATGTTCTACATGAAAGC+AGG - chr1.2:76446494-76446513 MS.gene34399:intron 40.0%
GTACAAATAGGACCGAAATG+GGG + chr1.2:76446907-76446926 None:intergenic 40.0%
GTGTGAAAAATGATGTGTGC+TGG - chr1.2:76446117-76446136 MS.gene34399:intron 40.0%
TAAAATTGCTGAGCTCAGAG+AGG - chr1.2:76446702-76446721 MS.gene34399:intron 40.0%
TGAGTATGTGCTTTACGAAG+GGG - chr1.2:76445079-76445098 MS.gene34399:CDS 40.0%
TGCACAGAAAAAGGGAATTG+TGG + chr1.2:76445200-76445219 None:intergenic 40.0%
TGCTTTGGTGAGGGAAAAAA+TGG - chr1.2:76445325-76445344 MS.gene34399:CDS 40.0%
TTACCGTGAAATCAATGCCA+GGG + chr1.2:76445163-76445182 None:intergenic 40.0%
! TTGATGGTTTGCAGAGCATT+TGG - chr1.2:76446666-76446685 MS.gene34399:intron 40.0%
!! GGGGTGTTTGTATTTTGCTT+TGG - chr1.2:76445310-76445329 MS.gene34399:CDS 40.0%
!! GGTGCTGATATTCAAATGGA+TGG - chr1.2:76445936-76445955 MS.gene34399:intron 40.0%
!! TGCTGGTGCTGATATTCAAA+TGG - chr1.2:76445932-76445951 MS.gene34399:intron 40.0%
!!! ACAAGTGCTGACGTTCATTT+TGG + chr1.2:76445699-76445718 None:intergenic 40.0%
!!! ACGTCAGCACTTGTTTTGTT+CGG - chr1.2:76445705-76445724 MS.gene34399:CDS 40.0%
!!! GTGGATGGTTTTGATGTGTT+TGG - chr1.2:76444992-76445011 MS.gene34399:CDS 40.0%
AAACCTCCTTCAAGCATAGG+GGG + chr1.2:76446096-76446115 None:intergenic 45.0%
CAGAGGGAATATGACCAACA+TGG + chr1.2:76446454-76446473 None:intergenic 45.0%
CTTACCGTGAAATCAATGCC+AGG + chr1.2:76445164-76445183 None:intergenic 45.0%
GAAATCAATGCCAGGGTGAT+CGG + chr1.2:76445156-76445175 None:intergenic 45.0%
GACCAAAAAGAGTTGCCTGT+TGG - chr1.2:76445508-76445527 MS.gene34399:intron 45.0%
GGGTACAAATAGGACCGAAA+TGG + chr1.2:76446909-76446928 None:intergenic 45.0%
TATCTGCAGGTAACATCTCC+TGG - chr1.2:76446299-76446318 MS.gene34399:intron 45.0%
TCTTGGACAACATTACCTCC+AGG + chr1.2:76446320-76446339 None:intergenic 45.0%
TTACGAAGGGGATACCGTTT+CGG - chr1.2:76445091-76445110 MS.gene34399:intron 45.0%
! AGCCAACAGGCAACTCTTTT+TGG + chr1.2:76445513-76445532 None:intergenic 45.0%
! CAATTTAAGGCCCCAGTACA+CGG - chr1.2:76446368-76446387 MS.gene34399:intron 45.0%
!! ATGCCACTGACTTGCTGAAA+AGG + chr1.2:76447069-76447088 None:intergenic 45.0%
!! TCACCCTGGCATTGATTTCA+CGG - chr1.2:76445157-76445176 MS.gene34399:intron 45.0%
!! TGTTACAGAAGGTACTGCCA+AGG + chr1.2:76445643-76445662 None:intergenic 45.0%
AACCTCCTTCAAGCATAGGG+GGG + chr1.2:76446095-76446114 None:intergenic 50.0%
ACTTGAGAGCTCGAGATGCA+AGG - chr1.2:76446755-76446774 MS.gene34399:intron 50.0%
ATTGGCTGTGGGAGTCTCAT+TGG - chr1.2:76446065-76446084 MS.gene34399:intron 50.0%
CACTAACAGCAGCCAACAGA+AGG + chr1.2:76447021-76447040 None:intergenic 50.0%
GAGAAACGCGAAGATGTGGA+TGG - chr1.2:76444977-76444996 MS.gene34399:CDS 50.0%
GAGCATGACCTTGCCAAAGA+TGG - chr1.2:76446473-76446492 MS.gene34399:intron 50.0%
TACGAAGGGGATACCGTTTC+GGG - chr1.2:76445092-76445111 MS.gene34399:intron 50.0%
TTGGCAAGGTCATGCTCAGA+GGG + chr1.2:76446470-76446489 None:intergenic 50.0%
TTTGGCAAGGTCATGCTCAG+AGG + chr1.2:76446471-76446490 None:intergenic 50.0%
!! ACGGTCTCAGGTGTTGAGTA+TGG + chr1.2:76446419-76446438 None:intergenic 50.0%
!! CGGTCTCAGGTGTTGAGTAT+GGG + chr1.2:76446418-76446437 None:intergenic 50.0%
!! TGTCGGAGAGTACCTTCTGT+TGG - chr1.2:76447006-76447025 MS.gene34399:CDS 50.0%
ACCTCCTTCAAGCATAGGGG+GGG + chr1.2:76446094-76446113 None:intergenic 55.0%
ACGAAGGGGATACCGTTTCG+GGG - chr1.2:76445093-76445112 MS.gene34399:intron 55.0%
CTGCAGGTAACATCTCCTGG+AGG - chr1.2:76446302-76446321 MS.gene34399:intron 55.0%
GTTACCCCCCCTATGCTTGA+AGG - chr1.2:76446087-76446106 MS.gene34399:intron 55.0%
! GCGCCTTTTCAGCAAGTCAG+TGG - chr1.2:76447063-76447082 MS.gene34399:CDS 55.0%
! TGCTGAGCTCAGAGAGGCAT+TGG - chr1.2:76446708-76446727 MS.gene34399:intron 55.0%
!! TGCAAGGCATCGCCACAGTA+AGG - chr1.2:76446771-76446790 MS.gene34399:intron 55.0%
!! TTCTGGAGTTCCGATCACCC+TGG - chr1.2:76445143-76445162 MS.gene34399:intron 55.0%
ACCCCCCCTATGCTTGAAGG+AGG - chr1.2:76446090-76446109 MS.gene34399:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 76444969 76447102 76444969 ID=MS.gene34399
chr1.2 mRNA 76444969 76447102 76444969 ID=MS.gene34399.t1;Parent=MS.gene34399
chr1.2 exon 76446893 76447102 76446893 ID=MS.gene34399.t1.exon1;Parent=MS.gene34399.t1
chr1.2 CDS 76446893 76447102 76446893 ID=cds.MS.gene34399.t1;Parent=MS.gene34399.t1
chr1.2 exon 76445577 76445763 76445577 ID=MS.gene34399.t1.exon2;Parent=MS.gene34399.t1
chr1.2 CDS 76445577 76445763 76445577 ID=cds.MS.gene34399.t1;Parent=MS.gene34399.t1
chr1.2 exon 76445284 76445391 76445284 ID=MS.gene34399.t1.exon3;Parent=MS.gene34399.t1
chr1.2 CDS 76445284 76445391 76445284 ID=cds.MS.gene34399.t1;Parent=MS.gene34399.t1
chr1.2 exon 76444969 76445102 76444969 ID=MS.gene34399.t1.exon4;Parent=MS.gene34399.t1
chr1.2 CDS 76444969 76445102 76444969 ID=cds.MS.gene34399.t1;Parent=MS.gene34399.t1
Gene Sequence

>MS.gene34399

ATGGAAAAGAGAAACGCGAAGATGTGGATGGTTTTGATGTGTTTGGTGTTTATCTTCGTTGATCGAATTGAATCGTTATCTGTAACTGTGCAAGACGTTGAATGTCTCTATGAGTATGTGCTTTACGAAGGGGATACCGTTTCGGGGAATTTTGTTGTCGTTGACCATGATATTTTCTGGAGTTCCGATCACCCTGGCATTGATTTCACGGTAAGTCGAATCTCAATTCCACAATTCCCTTTTTCTGTGCAATTTTGATATTTTTTTATTGATTTTTTTTTTTATCTTATGATTGCCTTGCCCAGTTCATAATTTGTTGAATTATGATTTATGAAATTATTGGGGTGTTTGTATTTTGCTTTGGTGAGGGAAAAAATGGTTTTTTTTAGGGTGTTTAAGAGGGATTTTGATGTGTCATATAATGAAGATCAATTATTATTCATGTAGCTTTGAATCATATATAATGAACTGTAACTGAATATAGAATTGAAGTTTAGGTGTCCAAGGAAGTTTTTGTTTATGCCTATAGGTAAACTAAAGACCAAAAAGAGTTGCCTGTTGGCTTGATTATATTTTCCTTAAGCTGCATTATATCAATTCCACTTAAATGTGATTAAGTTTTATTATATCAATTCCACTTTGTATGATTTAATGAATGGTTATTGGTGAATCCTTGGCAGTACCTTCTGTAACATTATTGTAAACTCATCTAGTACTGAAACTTTGGCCAAAATGAACGTCAGCACTTGTTTTGTTCGGATGTTAACTGATCTTTGTTAGTGCGTAATAGGATTAAATCAATTTGATCAATCCATGTTGGATCAGTGTGTTTGTGAGTTATATAAATCAGAACATGAAAATTGAATCGTAGAAAGTGATGACTGAAGATAGTTAATGTAGGAATAGGGAGGTAAAAGATAAACACTTAAAGGACATCATGTATTTTTGTATTTATGCCTATTTTGCTGGTGCTGATATTCAAATGGATGGTCTTTATGTTGTGCCCCTAAATGGATTTATTCTCAAGCTTTTATGCTTTTGTATATAGCAAACTGCGGCTTGAGACATAGATACCTTGACGCTTGACTATATTGTTATTGGCTGTGGGAGTCTCATTGGTTACCCCCCCTATGCTTGAAGGAGGTTTTGTGTGAAAAATGATGTGTGCTGGCCAGTATTATATTATAGGAACAACAGTTGAAGCCATCATTTGTTATTATTTTGATGAATCTATTATTGCTTGCTAATCAGACTCAGTTCAGAATGACATGCCCAGATTTTCATATTGTTTTGTAACTTTAGCTTTTCAGATATCCTAATTTTTTGCAGTTATCTGCAGGTAACATCTCCTGGAGGTAATGTTGTCCAAGATATCAAGGGAACATCTGGAGACAAATTTCAATTTAAGGCCCCAGTACACGGAATGTATAAATTTTGTTTTCATAACCCATACTCAACACCTGAGACCGTTTCTTTCTATATCCATGTTGGTCATATTCCCTCTGAGCATGACCTTGCCAAAGATGGTATGTTCTACATGAAAGCAGGCTAATTTATTACACTATCATATTACCGTATTCATTTGTTGAAGTGTTAAATTTACCATTTACCTGACTTACTTCTTGACATTTCTGATGAATGATCTGAGGTCTATTTTATTTTCCTATGTTTTGGTTATCTGGCCTTCCTTTTAAACTTTGATGGTTTGCAGAGCATTTGGACCCAATTAATGTTAAAATTGCTGAGCTCAGAGAGGCATTGGAATCTGTTACAGCTGAACAAAAGTACTTGAGAGCTCGAGATGCAAGGCATCGCCACAGTAAGGAGTTTTCTTTTCCATCAACTTTCATTGTTCTACTTCTACTTTGAAAATTCAATTGTGGTAGTCTTGTTAATTCTTGTGAACGTATGTGATATATGGACACATTTCTTTTTCCCCATTTCGGTCCTATTTGTACCCTTCTTAAATTCTTACTTACTCAACGATGTGTTGTTTGTAGCGAACGAGAGTACACATAAGCGTGTTATCTTCTACACTGTCGGAGAGTACCTTCTGTTGGCTGCTGTTAGTGCACTGCAAGTCATTTACATCAGGCGCCTTTTCAGCAAGTCAGTGGCATACAACCGTGTTTGA
Protein sequence

>MS.gene34399.t1

MEKRNAKMWMVLMCLVFIFVDRIESLSVTVQDVECLYEYVLYEGDTVSGNFVVVDHDIFWSSDHPGIDFTVTSPGGNVVQDIKGTSGDKFQFKAPVHGMYKFCFHNPYSTPETVSFYIHVGHIPSEHDLAKDEHLDPINVKIAELREALESVTAEQKYLRARDARHRHTNESTHKRVIFYTVGEYLLLAAVSALQVIYIRRLFSKSVAYNRV