Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34570.t1 | AES62539.2 | 91.1 | 101 | 9 | 0 | 1 | 101 | 362 | 462 | 3.20E-19 | 104.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34570.t1 | G7IAN6 | 91.1 | 101 | 9 | 0 | 1 | 101 | 362 | 462 | 2.3e-19 | 104.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene34570 | 0.817719 | 2.85E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene34570 | 0.803415 | 3.52E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene34570 | 0.810096 | 1.37E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene34570 | 0.807659 | 4.54E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene34570 | 0.802938 | 4.42E-49 | -1.69E-46 |
| MS.gene059249 | MS.gene34570 | 0.804403 | 2.20E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene34570 | 0.811108 | 8.26E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene34570 | 0.816051 | 6.75E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene34570 | 0.827951 | 1.18E-54 | -1.69E-46 |
| MS.gene060907 | MS.gene34570 | 0.80147 | 8.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTATTTGTAGGGGTTGC+CGG | 0.277671 | 1.4:+78162102 | MS.gene34570:intron |
| TGGAGAGAGATTTAAGCTTT+TGG | 0.333674 | 1.4:-78159726 | None:intergenic |
| CTTTGCCCATGTTGATCATT+GGG | 0.354628 | 1.4:-78159423 | None:intergenic |
| TTTGGATCATGGCAATTTCC+AGG | 0.382234 | 1.4:-78161181 | None:intergenic |
| GCATTGTTGTATGGTGTGAT+TGG | 0.384014 | 1.4:-78159704 | None:intergenic |
| TCAACATGGGCAAAGTTCTA+TGG | 0.387014 | 1.4:+78159431 | MS.gene34570:CDS |
| ACTTTGCCCATGTTGATCAT+TGG | 0.399619 | 1.4:-78159424 | None:intergenic |
| ATTATAATACCTTTGGATCA+TGG | 0.411189 | 1.4:-78161192 | None:intergenic |
| GAAGCAAACTTCCTCATCCT+TGG | 0.432600 | 1.4:-78159746 | None:intergenic |
| ACCTCAGTTCAGGGAACTAA+AGG | 0.472859 | 1.4:+78159381 | None:intergenic |
| GGGGAAATCGGGCACTCACT+TGG | 0.475469 | 1.4:+78159775 | MS.gene34570:CDS |
| CACTTCAGCTATAACTGCCC+TGG | 0.503544 | 1.4:+78161163 | MS.gene34570:CDS |
| GTATGGTGTGATTGGTCTCT+CGG | 0.519281 | 1.4:-78159696 | None:intergenic |
| TAAATCTCTCTCCAAGGATG+AGG | 0.556241 | 1.4:+78159735 | MS.gene34570:CDS |
| TGGAAATTGCCATGATCCAA+AGG | 0.561484 | 1.4:+78161183 | MS.gene34570:CDS |
| AAATGCTCAGTATATATAGC+AGG | 0.568557 | 1.4:+78159799 | MS.gene34570:CDS |
| TTGGATCATGGCAATTTCCA+GGG | 0.571363 | 1.4:-78161180 | None:intergenic |
| ACCATGCTTTCAGCTTCCAC+CGG | 0.607268 | 1.4:-78162121 | None:intergenic |
| AAAGCTTAAATCTCTCTCCA+AGG | 0.608046 | 1.4:+78159729 | MS.gene34570:CDS |
| CAGGTGGAGGAAGACTTGCT+AGG | 0.628523 | 1.4:+78161116 | MS.gene34570:intron |
| AATGCTCCCAATGATCAACA+TGG | 0.634265 | 1.4:+78159417 | MS.gene34570:CDS |
| TTATTTGTAGGGGTTGCCGG+TGG | 0.656187 | 1.4:+78162105 | MS.gene34570:intron |
| ATGCTCCCAATGATCAACAT+GGG | 0.667784 | 1.4:+78159418 | MS.gene34570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGGTATTATAATCTATTATT+TGG | + | chr1.4:78161203-78161222 | MS.gene34570:intron | 15.0% |
| !! | ATAATAGATTATAATACCTT+TGG | - | chr1.4:78161202-78161221 | None:intergenic | 15.0% |
| !! | ATATAATATATTGCAATTCA+CGG | + | chr1.4:78160452-78160471 | MS.gene34570:intron | 15.0% |
| !! | GGTATTATAATCTATTATTT+GGG | + | chr1.4:78161204-78161223 | MS.gene34570:intron | 15.0% |
| !! | GTATTATAATCTATTATTTG+GGG | + | chr1.4:78161205-78161224 | MS.gene34570:intron | 15.0% |
| !!! | TATTTTATTTTTACCATTCA+TGG | + | chr1.4:78159491-78159510 | MS.gene34570:intron | 15.0% |
| !! | AAATCAGAAAAACAAAGTTT+AGG | - | chr1.4:78159985-78160004 | None:intergenic | 20.0% |
| !! | AAATGATCTGTTAATTGATT+CGG | - | chr1.4:78160929-78160948 | None:intergenic | 20.0% |
| !! | AATTACTTGGTTAGATATAT+AGG | - | chr1.4:78161362-78161381 | None:intergenic | 20.0% |
| !! | ATACATGAATTGTTTATGAA+GGG | - | chr1.4:78160895-78160914 | None:intergenic | 20.0% |
| !! | ATATTATATACCACAAAAAC+AGG | - | chr1.4:78160441-78160460 | None:intergenic | 20.0% |
| !! | ATGAGATCAATATAAACTAA+TGG | - | chr1.4:78162003-78162022 | None:intergenic | 20.0% |
| !! | TGAAACATGAAATTATGTAA+GGG | + | chr1.4:78160577-78160596 | MS.gene34570:intron | 20.0% |
| !! | TGCAAATTATAGATTTGATA+TGG | - | chr1.4:78159920-78159939 | None:intergenic | 20.0% |
| !! | TTATAACGAAATCTATTTAG+AGG | + | chr1.4:78160863-78160882 | MS.gene34570:intron | 20.0% |
| !! | TTGAAACATGAAATTATGTA+AGG | + | chr1.4:78160576-78160595 | MS.gene34570:intron | 20.0% |
| !!! | AAAAAGTATTATTGCATACT+AGG | + | chr1.4:78161411-78161430 | MS.gene34570:intron | 20.0% |
| !!! | ATTATTCCTTTTGGTAATTT+TGG | + | chr1.4:78160644-78160663 | MS.gene34570:intron | 20.0% |
| !!! | GTTGATTCAATTTGAAATTT+AGG | + | chr1.4:78159609-78159628 | MS.gene34570:intron | 20.0% |
| !!! | TAGTATGCAATAATACTTTT+TGG | - | chr1.4:78161412-78161431 | None:intergenic | 20.0% |
| !!! | TTCAATTTGAAATTTAGGAT+AGG | + | chr1.4:78159614-78159633 | MS.gene34570:intron | 20.0% |
| !!! | TTTTTCAGCATTTATATGTA+TGG | + | chr1.4:78160180-78160199 | MS.gene34570:intron | 20.0% |
| ! | AAAACTTCAACAACTATTCA+TGG | - | chr1.4:78161760-78161779 | None:intergenic | 25.0% |
| ! | AATTGAATCAACTTCAAACT+TGG | - | chr1.4:78159601-78159620 | None:intergenic | 25.0% |
| ! | ACTTAAACTAAATCCATGAA+TGG | - | chr1.4:78159466-78159485 | None:intergenic | 25.0% |
| ! | ATAAAAAATGTTCAGAGTAG+TGG | + | chr1.4:78160227-78160246 | MS.gene34570:intron | 25.0% |
| ! | ATCATGTTGTAGTACATAAA+TGG | + | chr1.4:78159640-78159659 | MS.gene34570:intron | 25.0% |
| ! | ATGGTTTCTCACATTAAAAA+GGG | - | chr1.4:78159901-78159920 | None:intergenic | 25.0% |
| ! | ATTATAATACCTTTGGATCA+TGG | - | chr1.4:78161195-78161214 | None:intergenic | 25.0% |
| ! | ATTGAATCAACTTCAAACTT+GGG | - | chr1.4:78159600-78159619 | None:intergenic | 25.0% |
| ! | CAATATAAACTAATGGCAAA+AGG | - | chr1.4:78161996-78162015 | None:intergenic | 25.0% |
| ! | GATACATGAATTGTTTATGA+AGG | - | chr1.4:78160896-78160915 | None:intergenic | 25.0% |
| ! | TAAACTTCATAAATCTGCAA+TGG | + | chr1.4:78161030-78161049 | MS.gene34570:intron | 25.0% |
| ! | TATGGTTTCTCACATTAAAA+AGG | - | chr1.4:78159902-78159921 | None:intergenic | 25.0% |
| ! | TCATGTTGTAGTACATAAAT+GGG | + | chr1.4:78159641-78159660 | MS.gene34570:intron | 25.0% |
| ! | TGCTGTAGCATTATTTATAT+CGG | + | chr1.4:78160273-78160292 | MS.gene34570:intron | 25.0% |
| ! | TGCTTAGTTATATAAACAGT+TGG | + | chr1.4:78160792-78160811 | MS.gene34570:intron | 25.0% |
| ! | TTTAAATTTCTGCGTTTGAT+TGG | + | chr1.4:78160395-78160414 | MS.gene34570:intron | 25.0% |
| !! | ACAAATTTTCTATGAGAAAC+TGG | + | chr1.4:78161875-78161894 | MS.gene34570:intron | 25.0% |
| !! | TCGTGTTATAACTACATTTT+TGG | - | chr1.4:78161459-78161478 | None:intergenic | 25.0% |
| !! | TGCAAGTATATTATTCCTTT+TGG | + | chr1.4:78160635-78160654 | MS.gene34570:intron | 25.0% |
| !!! | CTTTTAGTGATTTTAAGTGT+TGG | + | chr1.4:78161782-78161801 | MS.gene34570:intron | 25.0% |
| !!! | CTTTTTCACTTGTATGAATA+AGG | - | chr1.4:78161632-78161651 | None:intergenic | 25.0% |
| AAAAACAGGTCATTGTCATA+AGG | - | chr1.4:78160427-78160446 | None:intergenic | 30.0% | |
| AAACAAAGTTTAGGCATCTA+AGG | - | chr1.4:78159976-78159995 | None:intergenic | 30.0% | |
| AAACAATTCATGTATCTGAC+TGG | + | chr1.4:78160900-78160919 | MS.gene34570:intron | 30.0% | |
| AAATGCTCAGTATATATAGC+AGG | + | chr1.4:78159799-78159818 | MS.gene34570:CDS | 30.0% | |
| AAATTGTTCATTTGTGTTGC+AGG | + | chr1.4:78161097-78161116 | MS.gene34570:intron | 30.0% | |
| AATTGTCACTAATGTCTAGT+TGG | + | chr1.4:78159944-78159963 | MS.gene34570:intron | 30.0% | |
| AGTCTTCCCTAAAAAAAAAC+TGG | + | chr1.4:78160707-78160726 | MS.gene34570:intron | 30.0% | |
| ATCATATCTTTCTTGATCGA+AGG | + | chr1.4:78162021-78162040 | MS.gene34570:intron | 30.0% | |
| ATTGTCAAATGGTTGGAATT+TGG | + | chr1.4:78161491-78161510 | MS.gene34570:intron | 30.0% | |
| CAAACGCAGAAATTTAAACA+AGG | - | chr1.4:78160393-78160412 | None:intergenic | 30.0% | |
| CATGTTGTAGTACATAAATG+GGG | + | chr1.4:78159642-78159661 | MS.gene34570:intron | 30.0% | |
| CGAACATTGAACAAACTATA+AGG | - | chr1.4:78161839-78161858 | None:intergenic | 30.0% | |
| CTCTCAAAGGTAAAAATTCA+CGG | + | chr1.4:78161602-78161621 | MS.gene34570:intron | 30.0% | |
| GGTTAGATATATAGGAAGTT+GGG | - | chr1.4:78161354-78161373 | None:intergenic | 30.0% | |
| TAAAAAAAAACTGGCAGAAG+AGG | + | chr1.4:78160716-78160735 | MS.gene34570:intron | 30.0% | |
| TAAAAAGAAACGGGGAAAAA+TGG | - | chr1.4:78161237-78161256 | None:intergenic | 30.0% | |
| TACATTAAAGCTTCCTTTAC+AGG | + | chr1.4:78160334-78160353 | MS.gene34570:intron | 30.0% | |
| TAGCTTCCAAAATTACCAAA+AGG | - | chr1.4:78160653-78160672 | None:intergenic | 30.0% | |
| TCTTCATCATTCTCATATGT+AGG | + | chr1.4:78161968-78161987 | MS.gene34570:intron | 30.0% | |
| TGGTTAGATATATAGGAAGT+TGG | - | chr1.4:78161355-78161374 | None:intergenic | 30.0% | |
| TTCCACTTTAGTGAAAAATG+AGG | + | chr1.4:78160477-78160496 | MS.gene34570:intron | 30.0% | |
| ! | AGAAACTGAGAATTCGTTTT+AGG | - | chr1.4:78160961-78160980 | None:intergenic | 30.0% |
| ! | ATAGAGTTCTATTGACTAGA+AGG | - | chr1.4:78160545-78160564 | None:intergenic | 30.0% |
| ! | GACAGCTTTAACATATTAAC+TGG | - | chr1.4:78161301-78161320 | None:intergenic | 30.0% |
| ! | TTACTTCTATGTTTTGCTCA+CGG | + | chr1.4:78160016-78160035 | MS.gene34570:intron | 30.0% |
| ! | TTGTATGCTATTTGAGTTAG+TGG | - | chr1.4:78161323-78161342 | None:intergenic | 30.0% |
| ! | TTTTTCCCCGTTTCTTTTTA+CGG | + | chr1.4:78161237-78161256 | MS.gene34570:intron | 30.0% |
| !! | ATCCTCATTTTTCACTAAAG+TGG | - | chr1.4:78160482-78160501 | None:intergenic | 30.0% |
| !! | GTTGTTGTCTTTTGTTTATC+TGG | + | chr1.4:78160678-78160697 | MS.gene34570:intron | 30.0% |
| !! | TAGGCACTTATTTGTTTCTA+TGG | + | chr1.4:78161697-78161716 | MS.gene34570:intron | 30.0% |
| !!! | CTTCTGCCAGTTTTTTTTTA+GGG | - | chr1.4:78160716-78160735 | None:intergenic | 30.0% |
| !!! | TCTTCTGCCAGTTTTTTTTT+AGG | - | chr1.4:78160717-78160736 | None:intergenic | 30.0% |
| !!! | TGCTTATTTTGTAATGCACA+CGG | + | chr1.4:78161139-78161158 | MS.gene34570:CDS | 30.0% |
| AAAAATGTTCAGAGTAGTGG+TGG | + | chr1.4:78160230-78160249 | MS.gene34570:intron | 35.0% | |
| AAAGCTTAAATCTCTCTCCA+AGG | + | chr1.4:78159729-78159748 | MS.gene34570:CDS | 35.0% | |
| AATTTCTGCGTTTGATTGGA+CGG | + | chr1.4:78160399-78160418 | MS.gene34570:intron | 35.0% | |
| ACTCTAATAAAATCCCCTTG+TGG | - | chr1.4:78160751-78160770 | None:intergenic | 35.0% | |
| ACTTGTCCATGATTGTCAAA+TGG | + | chr1.4:78161480-78161499 | MS.gene34570:intron | 35.0% | |
| AGATGAATCAATGCCTGTAA+AGG | - | chr1.4:78160350-78160369 | None:intergenic | 35.0% | |
| AGGAATGCAGTACAATTACT+TGG | - | chr1.4:78161375-78161394 | None:intergenic | 35.0% | |
| AGTACATAAATGGGGTAACT+TGG | + | chr1.4:78159650-78159669 | MS.gene34570:intron | 35.0% | |
| ATGGTACGTAATACCATTCA+TGG | + | chr1.4:78159450-78159469 | MS.gene34570:intron | 35.0% | |
| CATAAATCTGCAATGGTACT+AGG | + | chr1.4:78161037-78161056 | MS.gene34570:intron | 35.0% | |
| CTTGTTCCCATTATTTGTAG+GGG | + | chr1.4:78162095-78162114 | MS.gene34570:intron | 35.0% | |
| GCTTGTTCCCATTATTTGTA+GGG | + | chr1.4:78162094-78162113 | MS.gene34570:intron | 35.0% | |
| GTTTCTCACATTAAAAAGGG+TGG | - | chr1.4:78159898-78159917 | None:intergenic | 35.0% | |
| TAAAGCACAGTTATCAATCC+CGG | - | chr1.4:78160316-78160335 | None:intergenic | 35.0% | |
| TGCAGATCCGTAAAAAGAAA+CGG | - | chr1.4:78161247-78161266 | None:intergenic | 35.0% | |
| TGCTTGTTCCCATTATTTGT+AGG | + | chr1.4:78162093-78162112 | MS.gene34570:intron | 35.0% | |
| TTCCAACCATTTGACAATCA+TGG | - | chr1.4:78161489-78161508 | None:intergenic | 35.0% | |
| TTCTCGAACTAACACAGATA+AGG | - | chr1.4:78161658-78161677 | None:intergenic | 35.0% | |
| ! | AACAAATGAGTTGAGTGTCT+AGG | + | chr1.4:78161678-78161697 | MS.gene34570:intron | 35.0% |
| ! | AAGCTTTTGGCATTGTTGTA+TGG | - | chr1.4:78159716-78159735 | None:intergenic | 35.0% |
| ! | AGTTCTATTGACTAGAAGGA+AGG | - | chr1.4:78160541-78160560 | None:intergenic | 35.0% |
| ! | CACTAATGTCTAGTTGGTTT+AGG | + | chr1.4:78159950-78159969 | MS.gene34570:intron | 35.0% |
| ! | CGTGAATTTTTACCTTTGAG+AGG | - | chr1.4:78161604-78161623 | None:intergenic | 35.0% |
| ! | TGGAGAGAGATTTAAGCTTT+TGG | - | chr1.4:78159729-78159748 | None:intergenic | 35.0% |
| !! | AGGAAGTTTGCTTCTTTTGT+GGG | + | chr1.4:78159755-78159774 | MS.gene34570:CDS | 35.0% |
| !! | CTTTCGAAATGGATTTTTGG+CGG | + | chr1.4:78160609-78160628 | MS.gene34570:intron | 35.0% |
| !! | GCTCTTTCGAAATGGATTTT+TGG | + | chr1.4:78160606-78160625 | MS.gene34570:intron | 35.0% |
| !! | TGTTTCTATGGCTTTAGAAG+AGG | + | chr1.4:78161709-78161728 | MS.gene34570:intron | 35.0% |
| !! | TTGGCTTTTGCAGTTATGTT+GGG | + | chr1.4:78159669-78159688 | MS.gene34570:intron | 35.0% |
| !!! | ATGACAATGACCTGTTTTTG+TGG | + | chr1.4:78160428-78160447 | MS.gene34570:intron | 35.0% |
| !!! | GCTTATTTTGTAATGCACAC+GGG | + | chr1.4:78161140-78161159 | MS.gene34570:CDS | 35.0% |
| !!! | TTTTGGAATAGATGCAGAAC+AGG | - | chr1.4:78161395-78161414 | None:intergenic | 35.0% |
| AAGGCAGGTTCTACTATAGA+TGG | + | chr1.4:78161524-78161543 | MS.gene34570:intron | 40.0% | |
| AATGCTCCCAATGATCAACA+TGG | + | chr1.4:78159417-78159436 | MS.gene34570:CDS | 40.0% | |
| ACTTTGCCCATGTTGATCAT+TGG | - | chr1.4:78159427-78159446 | None:intergenic | 40.0% | |
| AGACACATTTGTGAGCAACT+TGG | - | chr1.4:78161918-78161937 | None:intergenic | 40.0% | |
| ATGCTCCCAATGATCAACAT+GGG | + | chr1.4:78159418-78159437 | MS.gene34570:CDS | 40.0% | |
| ATTTCTGCGTTTGATTGGAC+GGG | + | chr1.4:78160400-78160419 | MS.gene34570:intron | 40.0% | |
| CAGATCCGTAAAAAGAAACG+GGG | - | chr1.4:78161245-78161264 | None:intergenic | 40.0% | |
| CTAATAAAATCCCCTTGTGG+AGG | - | chr1.4:78160748-78160767 | None:intergenic | 40.0% | |
| CTTTGCCCATGTTGATCATT+GGG | - | chr1.4:78159426-78159445 | None:intergenic | 40.0% | |
| GAATCAACTTCAAACTTGGG+CGG | - | chr1.4:78159597-78159616 | None:intergenic | 40.0% | |
| GCAACAGAATATGACTGACT+CGG | - | chr1.4:78160839-78160858 | None:intergenic | 40.0% | |
| GCAGATCCGTAAAAAGAAAC+GGG | - | chr1.4:78161246-78161265 | None:intergenic | 40.0% | |
| GCATTGTTGTATGGTGTGAT+TGG | - | chr1.4:78159707-78159726 | None:intergenic | 40.0% | |
| GTCCATGATTGTCAAATGGT+TGG | + | chr1.4:78161484-78161503 | MS.gene34570:intron | 40.0% | |
| TAAATCTCTCTCCAAGGATG+AGG | + | chr1.4:78159735-78159754 | MS.gene34570:CDS | 40.0% | |
| TAATGCTACAGCACAATAGC+AGG | - | chr1.4:78160266-78160285 | None:intergenic | 40.0% | |
| TCAACATGGGCAAAGTTCTA+TGG | + | chr1.4:78159431-78159450 | MS.gene34570:CDS | 40.0% | |
| TGGAAATTGCCATGATCCAA+AGG | + | chr1.4:78161183-78161202 | MS.gene34570:CDS | 40.0% | |
| TTGGATCATGGCAATTTCCA+GGG | - | chr1.4:78161183-78161202 | None:intergenic | 40.0% | |
| TTGTTCATTTGTGTTGCAGG+TGG | + | chr1.4:78161100-78161119 | MS.gene34570:intron | 40.0% | |
| TTTGGATCATGGCAATTTCC+AGG | - | chr1.4:78161184-78161203 | None:intergenic | 40.0% | |
| ! | TGCTTCTTTTGTGGGGAAAT+CGG | + | chr1.4:78159763-78159782 | MS.gene34570:CDS | 40.0% |
| !! | CTTGGCTTTTGCAGTTATGT+TGG | + | chr1.4:78159668-78159687 | MS.gene34570:intron | 40.0% |
| !! | GAGGAAGTTTGCTTCTTTTG+TGG | + | chr1.4:78159754-78159773 | MS.gene34570:CDS | 40.0% |
| !! | GGAAGTTTGCTTCTTTTGTG+GGG | + | chr1.4:78159756-78159775 | MS.gene34570:CDS | 40.0% |
| AGGTGAAACACTCCGATAGA+TGG | - | chr1.4:78161819-78161838 | None:intergenic | 45.0% | |
| CAGTTATCAATCCCGGATAG+TGG | - | chr1.4:78160309-78160328 | None:intergenic | 45.0% | |
| CCATTATTTGTAGGGGTTGC+CGG | + | chr1.4:78162102-78162121 | MS.gene34570:intron | 45.0% | |
| CGGCAACCCCTACAAATAAT+GGG | - | chr1.4:78162104-78162123 | None:intergenic | 45.0% | |
| GAAGCAAACTTCCTCATCCT+TGG | - | chr1.4:78159749-78159768 | None:intergenic | 45.0% | |
| GAGGAGTGAGCTACTACTTT+CGG | + | chr1.4:78161728-78161747 | MS.gene34570:intron | 45.0% | |
| GGAATTTGGACACATGAGCA+AGG | + | chr1.4:78161505-78161524 | MS.gene34570:intron | 45.0% | |
| GGACAGTAGCTCTTTCGAAA+TGG | + | chr1.4:78160598-78160617 | MS.gene34570:intron | 45.0% | |
| TTCATTTGTGTTGCAGGTGG+AGG | + | chr1.4:78161103-78161122 | MS.gene34570:intron | 45.0% | |
| ! | CTGCAAGTCTCTTTGATAGC+TGG | + | chr1.4:78161262-78161281 | MS.gene34570:intron | 45.0% |
| ! | GCTTCTTTTGTGGGGAAATC+GGG | + | chr1.4:78159764-78159783 | MS.gene34570:CDS | 45.0% |
| !! | GTATGGTGTGATTGGTCTCT+CGG | - | chr1.4:78159699-78159718 | None:intergenic | 45.0% |
| AAGAGGCTACTTCCTCCACA+AGG | + | chr1.4:78160733-78160752 | MS.gene34570:intron | 50.0% | |
| ACACTCCGATAGATGGCTCA+TGG | - | chr1.4:78161812-78161831 | None:intergenic | 50.0% | |
| AGAGGCTACTTCCTCCACAA+GGG | + | chr1.4:78160734-78160753 | MS.gene34570:intron | 50.0% | |
| CACTTCAGCTATAACTGCCC+TGG | + | chr1.4:78161163-78161182 | MS.gene34570:CDS | 50.0% | |
| CCGGCAACCCCTACAAATAA+TGG | - | chr1.4:78162105-78162124 | None:intergenic | 50.0% | |
| CGATTGATGCTGCCTCTCAA+AGG | + | chr1.4:78161589-78161608 | MS.gene34570:intron | 50.0% | |
| GAGGCAGCATCAATCGTTGT+TGG | - | chr1.4:78161585-78161604 | None:intergenic | 50.0% | |
| GTCCACCATGAGCCATCTAT+CGG | + | chr1.4:78161804-78161823 | MS.gene34570:intron | 50.0% | |
| TACAGCACAATAGCAGGTGC+AGG | - | chr1.4:78160260-78160279 | None:intergenic | 50.0% | |
| TTATTTGTAGGGGTTGCCGG+TGG | + | chr1.4:78162105-78162124 | MS.gene34570:intron | 50.0% | |
| TTTGGACACATGAGCAAGGC+AGG | + | chr1.4:78161509-78161528 | MS.gene34570:intron | 50.0% | |
| CTCCGATAGATGGCTCATGG+TGG | - | chr1.4:78161809-78161828 | None:intergenic | 55.0% | |
| GAGGCTACTTCCTCCACAAG+GGG | + | chr1.4:78160735-78160754 | MS.gene34570:intron | 55.0% | |
| ! | CAGGTGGAGGAAGACTTGCT+AGG | + | chr1.4:78161116-78161135 | MS.gene34570:intron | 55.0% |
| GGGGAAATCGGGCACTCACT+TGG | + | chr1.4:78159775-78159794 | MS.gene34570:CDS | 60.0% | |
| ! | TCCCGGATAGTGGCGCATAG+CGG | - | chr1.4:78160299-78160318 | None:intergenic | 60.0% |
| GCCGCTATGCGCCACTATCC+GGG | + | chr1.4:78160295-78160314 | MS.gene34570:intron | 65.0% | |
| GGCCGCTATGCGCCACTATC+CGG | + | chr1.4:78160294-78160313 | MS.gene34570:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 78159388 | 78162129 | 78159388 | ID=MS.gene34570 |
| chr1.4 | mRNA | 78159388 | 78162129 | 78159388 | ID=MS.gene34570.t1;Parent=MS.gene34570 |
| chr1.4 | exon | 78159388 | 78159452 | 78159388 | ID=MS.gene34570.t1.exon1;Parent=MS.gene34570.t1 |
| chr1.4 | CDS | 78159388 | 78159452 | 78159388 | ID=cds.MS.gene34570.t1;Parent=MS.gene34570.t1 |
| chr1.4 | exon | 78159682 | 78159820 | 78159682 | ID=MS.gene34570.t1.exon2;Parent=MS.gene34570.t1 |
| chr1.4 | CDS | 78159682 | 78159820 | 78159682 | ID=cds.MS.gene34570.t1;Parent=MS.gene34570.t1 |
| chr1.4 | exon | 78161119 | 78161204 | 78161119 | ID=MS.gene34570.t1.exon3;Parent=MS.gene34570.t1 |
| chr1.4 | CDS | 78161119 | 78161204 | 78161119 | ID=cds.MS.gene34570.t1;Parent=MS.gene34570.t1 |
| chr1.4 | exon | 78162115 | 78162129 | 78162115 | ID=MS.gene34570.t1.exon4;Parent=MS.gene34570.t1 |
| chr1.4 | CDS | 78162115 | 78162129 | 78162115 | ID=cds.MS.gene34570.t1;Parent=MS.gene34570.t1 |
| Gene Sequence |
| Protein sequence |
