Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34873.t1 | GAU12398.1 | 93.8 | 145 | 8 | 1 | 1 | 145 | 1 | 144 | 9.40E-66 | 260.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34873.t1 | Q9PV94 | 57.2 | 145 | 59 | 1 | 1 | 145 | 1 | 142 | 5.4e-38 | 159.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34873.t1 | A0A392PL91 | 93.1 | 145 | 9 | 1 | 1 | 145 | 1 | 144 | 2.6e-65 | 258.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067039 | MS.gene34873 | PPI |
| MS.gene34873 | MS.gene75567 | PPI |
| MS.gene34873 | MS.gene79126 | PPI |
| MS.gene045227 | MS.gene34873 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34873.t1 | MTR_8g080090 | 99.257 | 269 | 2 | 0 | 1 | 269 | 1 | 269 | 2.02e-178 | 492 |
| MS.gene34873.t1 | MTR_5g092010 | 93.956 | 182 | 8 | 3 | 1 | 181 | 1 | 180 | 8.70e-111 | 321 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34873.t1 | AT5G44500 | 82.353 | 153 | 26 | 1 | 1 | 153 | 1 | 152 | 1.13e-85 | 256 |
| MS.gene34873.t1 | AT5G44500 | 82.353 | 153 | 26 | 1 | 1 | 153 | 1 | 152 | 1.13e-85 | 256 |
| MS.gene34873.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 7.61e-79 | 239 |
| MS.gene34873.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 7.61e-79 | 239 |
| MS.gene34873.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 7.61e-79 | 239 |
| MS.gene34873.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 7.61e-79 | 239 |
| MS.gene34873.t1 | AT4G20440 | 82.317 | 164 | 25 | 3 | 1 | 164 | 1 | 160 | 7.61e-79 | 239 |
Find 131 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATGTATTGAAGCATTT+TGG | 0.217710 | 4.1:+15501912 | None:intergenic |
| GGTAGTGGTGTTCCTGTCTT+TGG | 0.265332 | 4.1:-15501199 | MS.gene34873:CDS |
| CGCAAACTTCCACCGGTAAA+AGG | 0.268999 | 4.1:-15501787 | MS.gene34873:CDS |
| TGTTGCTGCTGCTGCTGATT+TGG | 0.277019 | 4.1:+15501148 | None:intergenic |
| CAAGCTCAGCCTGGTCTTGC+TGG | 0.294341 | 4.1:-15501559 | MS.gene34873:CDS |
| GGTCCTCCTCCGCCGCAATT+TGG | 0.303202 | 4.1:-15501346 | MS.gene34873:CDS |
| AGCAGCAGCATTAACAGCTT+TGG | 0.339850 | 4.1:+15501645 | None:intergenic |
| CCTGGAATTGGTCGTGCTGC+TGG | 0.347321 | 4.1:-15501613 | MS.gene34873:CDS |
| CCACCTGGCATACCGGGATA+TGG | 0.364348 | 4.1:+15501421 | None:intergenic |
| CGAGGCGGCCCCTGCATTCC+AGG | 0.374487 | 4.1:+15501244 | None:intergenic |
| TGCTGCTGATTTGGAGGAGG+GGG | 0.381635 | 4.1:+15501157 | None:intergenic |
| CCAGGAGGAGGAGGCATTCC+GGG | 0.384559 | 4.1:+15501220 | None:intergenic |
| ACCAGGAGGAGGAGGCATTC+CGG | 0.385922 | 4.1:+15501219 | None:intergenic |
| TCCTCCTCATCCTGGAATGC+AGG | 0.390826 | 4.1:-15501254 | MS.gene34873:CDS |
| GCTGCTGCTGATTTGGAGGA+GGG | 0.392365 | 4.1:+15501155 | None:intergenic |
| GCTTTGGAGCGAGATTCTTC+AGG | 0.394190 | 4.1:+15501661 | None:intergenic |
| TGCTGCTGCTGATTTGGAGG+AGG | 0.400474 | 4.1:+15501154 | None:intergenic |
| ATCATCTGTCCAGGAGGAGG+TGG | 0.414307 | 4.1:+15501286 | None:intergenic |
| TGCTGCTGCTGCTGATTTGG+AGG | 0.415379 | 4.1:+15501151 | None:intergenic |
| CCTCCTCATCCTGGAATGCA+GGG | 0.419349 | 4.1:-15501253 | MS.gene34873:CDS |
| CCAGGCGGTGGACGCATCAC+TGG | 0.423398 | 4.1:+15501451 | None:intergenic |
| GGCATACCAAATTGCGGCGG+AGG | 0.431083 | 4.1:+15501340 | None:intergenic |
| CCCGGAATGCCTCCTCCTCC+TGG | 0.431670 | 4.1:-15501220 | MS.gene34873:CDS |
| GCTGGTCCTGTTCGTGGTGT+TGG | 0.434114 | 4.1:-15501541 | MS.gene34873:CDS |
| CGTCCACCAGTTTCGTATCC+TGG | 0.438982 | 4.1:-15501481 | MS.gene34873:CDS |
| CCAGCAGCACGACCAATTCC+AGG | 0.447795 | 4.1:+15501613 | None:intergenic |
| TCAACTCGTCGGAAAGTTCA+TGG | 0.449599 | 4.1:-15501857 | MS.gene34873:CDS |
| CGCCACATGAATCTCGTTCT+CGG | 0.453535 | 4.1:-15501826 | MS.gene34873:CDS |
| CGGAGGACCACCTGGCATAC+CGG | 0.454726 | 4.1:+15501414 | None:intergenic |
| GCTATGGCAGGTCCTGGAAT+TGG | 0.455744 | 4.1:-15501625 | MS.gene34873:CDS |
| CCAGGAGGAGGTGGGCCCAT+AGG | 0.458526 | 4.1:+15501295 | None:intergenic |
| CGAGTGTGCGGCGGTCTTCA+CGG | 0.461195 | 4.1:+15501743 | None:intergenic |
| GTTAATGCTGCTGCTATGGC+AGG | 0.462069 | 4.1:-15501637 | MS.gene34873:CDS |
| ATGCAGGGGCCGCCTCGTCC+CGG | 0.465963 | 4.1:-15501238 | MS.gene34873:CDS |
| GGTCCACCAACACCACGAAC+AGG | 0.467407 | 4.1:+15501535 | None:intergenic |
| TCAGTTTGGACAGAGACCTA+TGG | 0.472156 | 4.1:-15501311 | MS.gene34873:CDS |
| CTCATCATCTGTCCAGGAGG+AGG | 0.476906 | 4.1:+15501283 | None:intergenic |
| GGAGGAGGACCACCAGGTCT+CGG | 0.477467 | 4.1:+15501358 | None:intergenic |
| GTTGTTTCCATGACTGTTGA+AGG | 0.478145 | 4.1:-15501694 | MS.gene34873:CDS |
| GCTGCTGCTATGGCAGGTCC+TGG | 0.478959 | 4.1:-15501631 | MS.gene34873:CDS |
| GGTGTTGGTGGACCTGCTCC+TGG | 0.479693 | 4.1:-15501526 | MS.gene34873:CDS |
| GGACCACCAGGATACGAAAC+TGG | 0.480349 | 4.1:+15501475 | None:intergenic |
| GGTCTTGCTGGTCCTGTTCG+TGG | 0.480513 | 4.1:-15501547 | MS.gene34873:CDS |
| CTGGAATTGGTCGTGCTGCT+GGG | 0.482553 | 4.1:-15501612 | MS.gene34873:CDS |
| AGAGGACCTCCTCCTCATCC+TGG | 0.484171 | 4.1:-15501262 | MS.gene34873:CDS |
| TGAATAACTGTCGCCGGAGG+AGG | 0.485871 | 4.1:+15501580 | None:intergenic |
| ATACCAAATTGCGGCGGAGG+AGG | 0.486511 | 4.1:+15501343 | None:intergenic |
| CGTGAAGACCGCCGCACACT+CGG | 0.489568 | 4.1:-15501742 | MS.gene34873:CDS |
| ATGCCATATCCCGGTATGCC+AGG | 0.490273 | 4.1:-15501424 | MS.gene34873:CDS |
| GGTGGCGGACCACCTGGTCT+CGG | 0.492011 | 4.1:+15501394 | None:intergenic |
| CTTGAATTGTTACGCGCATA+CGG | 0.496159 | 4.1:+15501887 | None:intergenic |
| CCTATGGGCCCACCTCCTCC+TGG | 0.497010 | 4.1:-15501295 | MS.gene34873:CDS |
| GAGCGAGATTCTTCAGGAGG+AGG | 0.498376 | 4.1:+15501667 | None:intergenic |
| AGCTGTTAATGCTGCTGCTA+TGG | 0.500274 | 4.1:-15501641 | MS.gene34873:CDS |
| GGAGGAGCAAATTGCGGTGG+CGG | 0.503465 | 4.1:+15501379 | None:intergenic |
| CCAGTGATGCGTCCACCGCC+TGG | 0.505301 | 4.1:-15501451 | MS.gene34873:CDS |
| TGCGGCGGAGGAGGACCACC+AGG | 0.508853 | 4.1:+15501352 | None:intergenic |
| CTCTGTCCAAACTGAGGAGG+GGG | 0.509118 | 4.1:+15501319 | None:intergenic |
| CTTCGCCGCGGAGGAGGAGA+AGG | 0.510146 | 4.1:+15501719 | None:intergenic |
| GGAGGACCACCTGGCATACC+GGG | 0.510653 | 4.1:+15501415 | None:intergenic |
| ATGCCTCCTCCTCCTGGTAG+TGG | 0.510791 | 4.1:-15501214 | MS.gene34873:CDS |
| AATTGCGGTGGCGGACCACC+TGG | 0.511941 | 4.1:+15501388 | None:intergenic |
| CTGCTGCTGATTTGGAGGAG+GGG | 0.512495 | 4.1:+15501156 | None:intergenic |
| ACTGGTGGACGCGAGATTTG+CGG | 0.512954 | 4.1:+15501493 | None:intergenic |
| GGACGAGGTGGACCAAAGAC+AGG | 0.514937 | 4.1:+15501187 | None:intergenic |
| GGTCCTGTTCGTGGTGTTGG+TGG | 0.516931 | 4.1:-15501538 | MS.gene34873:CDS |
| CCTGGTCTCGGAGGACCACC+TGG | 0.517685 | 4.1:+15501406 | None:intergenic |
| CAATTTGCTCCTCCGAGACC+TGG | 0.521655 | 4.1:-15501370 | MS.gene34873:CDS |
| CGAGATTCTTCAGGAGGAGG+AGG | 0.523409 | 4.1:+15501670 | None:intergenic |
| CCGGGATATGGCATCTGACC+AGG | 0.523672 | 4.1:+15501433 | None:intergenic |
| CAACCTCTTCGCCGCGGAGG+AGG | 0.523754 | 4.1:+15501713 | None:intergenic |
| GGTCCTCTCATCATCTGTCC+AGG | 0.524181 | 4.1:+15501277 | None:intergenic |
| CCAGGTGGTCCTCCGAGACC+AGG | 0.525026 | 4.1:-15501406 | MS.gene34873:CDS |
| GGCCCCTGCATTCCAGGATG+AGG | 0.526052 | 4.1:+15501250 | None:intergenic |
| TGCATTCCAGGATGAGGAGG+AGG | 0.529746 | 4.1:+15501256 | None:intergenic |
| GGAGGAGGCATTCCGGGACG+AGG | 0.529786 | 4.1:+15501226 | None:intergenic |
| GTCTCTGTCCAAACTGAGGA+GGG | 0.534002 | 4.1:+15501317 | None:intergenic |
| CAGTTTGGACAGAGACCTAT+GGG | 0.538307 | 4.1:-15501310 | MS.gene34873:CDS |
| ATTGGTCGTGCTGCTGGGAG+AGG | 0.539889 | 4.1:-15501607 | MS.gene34873:CDS |
| GGCTGCATCATACCAGGAGC+AGG | 0.540362 | 4.1:+15501514 | None:intergenic |
| GTCTTTGGTCCACCTCGTCC+CGG | 0.542041 | 4.1:-15501184 | MS.gene34873:CDS |
| TATGGCATCTGACCAGGCGG+TGG | 0.542831 | 4.1:+15501439 | None:intergenic |
| TCTCCTCCTCCGCGGCGAAG+AGG | 0.543618 | 4.1:-15501716 | MS.gene34873:CDS |
| GAGATTCATGTGGCGGTCGA+AGG | 0.548205 | 4.1:+15501834 | None:intergenic |
| CGCATCACTGGAGGACCACC+AGG | 0.549753 | 4.1:+15501463 | None:intergenic |
| AGGAGGACCTTCAACAGTCA+TGG | 0.558071 | 4.1:+15501687 | None:intergenic |
| ACAGTTATTCAAGCTCAGCC+TGG | 0.558727 | 4.1:-15501568 | MS.gene34873:CDS |
| TCATCTGTCCAGGAGGAGGT+GGG | 0.563438 | 4.1:+15501287 | None:intergenic |
| GTCTTCACGGTCACCGTCGG+TGG | 0.565080 | 4.1:+15501756 | None:intergenic |
| CCCTGCATTCCAGGATGAGG+AGG | 0.566700 | 4.1:+15501253 | None:intergenic |
| AAGACAGGAACACCACTACC+AGG | 0.567248 | 4.1:+15501202 | None:intergenic |
| CGAACAGGACCAGCAAGACC+AGG | 0.568021 | 4.1:+15501550 | None:intergenic |
| CCTGGTCAGATGCCATATCC+CGG | 0.573529 | 4.1:-15501433 | MS.gene34873:CDS |
| TGGGAGAGGTATTCCTCCTC+CGG | 0.576694 | 4.1:-15501593 | MS.gene34873:CDS |
| GCGGTCTTCACGGTCACCGT+CGG | 0.576706 | 4.1:+15501753 | None:intergenic |
| ATTTGCGGCTGCATCATACC+AGG | 0.577839 | 4.1:+15501508 | None:intergenic |
| AGAGTTTCGCAAACTTCCAC+CGG | 0.582618 | 4.1:-15501794 | MS.gene34873:CDS |
| ACACCACTACCAGGAGGAGG+AGG | 0.583299 | 4.1:+15501211 | None:intergenic |
| TTGGAGCGAGATTCTTCAGG+AGG | 0.585958 | 4.1:+15501664 | None:intergenic |
| GGAGGAGAAGGCCGAGTGTG+CGG | 0.586029 | 4.1:+15501731 | None:intergenic |
| TGAGCTTGAATAACTGTCGC+CGG | 0.590066 | 4.1:+15501574 | None:intergenic |
| GGCGGTGGACGCATCACTGG+AGG | 0.605634 | 4.1:+15501454 | None:intergenic |
| CTCCTCATCCTGGAATGCAG+GGG | 0.609249 | 4.1:-15501252 | MS.gene34873:CDS |
| GGAGGCATTCCGGGACGAGG+CGG | 0.610066 | 4.1:+15501229 | None:intergenic |
| GGTCTCTGTCCAAACTGAGG+AGG | 0.612028 | 4.1:+15501316 | None:intergenic |
| GGAACACCACTACCAGGAGG+AGG | 0.616003 | 4.1:+15501208 | None:intergenic |
| CAAGACGGTCGTCAACTCGT+CGG | 0.618826 | 4.1:-15501868 | MS.gene34873:CDS |
| TCTCTGTCCAAACTGAGGAG+GGG | 0.621232 | 4.1:+15501318 | None:intergenic |
| TTTGCTCCTCCGAGACCTGG+TGG | 0.625587 | 4.1:-15501367 | MS.gene34873:CDS |
| CTCGGAGGAGCAAATTGCGG+TGG | 0.627944 | 4.1:+15501376 | None:intergenic |
| CCTCCTGGACAGATGATGAG+AGG | 0.637519 | 4.1:-15501280 | MS.gene34873:CDS |
| AAACAACCTCTTCGCCGCGG+AGG | 0.648728 | 4.1:+15501710 | None:intergenic |
| GGAGAAGGCCGAGTGTGCGG+CGG | 0.649221 | 4.1:+15501734 | None:intergenic |
| CGAGAACGAGATTCATGTGG+CGG | 0.654892 | 4.1:+15501827 | None:intergenic |
| GGTCTCGGAGGAGCAAATTG+CGG | 0.656856 | 4.1:+15501373 | None:intergenic |
| GGTGGTCCTCCGAGACCAGG+TGG | 0.664434 | 4.1:-15501403 | MS.gene34873:CDS |
| CCTCTCATCATCTGTCCAGG+AGG | 0.666388 | 4.1:+15501280 | None:intergenic |
| GGCGGACCACCTGGTCTCGG+AGG | 0.672885 | 4.1:+15501397 | None:intergenic |
| CCATATCCCGGTATGCCAGG+TGG | 0.677559 | 4.1:-15501421 | MS.gene34873:CDS |
| ATAGGTCTCTGTCCAAACTG+AGG | 0.679573 | 4.1:+15501313 | None:intergenic |
| CGCCGAGAACGAGATTCATG+TGG | 0.682544 | 4.1:+15501824 | None:intergenic |
| GCTTGAATAACTGTCGCCGG+AGG | 0.688958 | 4.1:+15501577 | None:intergenic |
| GGAGGACCACCAGGTCTCGG+AGG | 0.690122 | 4.1:+15501361 | None:intergenic |
| CCACCAGGATACGAAACTGG+TGG | 0.691786 | 4.1:+15501478 | None:intergenic |
| CCACCAGTTTCGTATCCTGG+TGG | 0.698080 | 4.1:-15501478 | MS.gene34873:CDS |
| GGATATGGCATCTGACCAGG+CGG | 0.715982 | 4.1:+15501436 | None:intergenic |
| CTCGGCCTTCTCCTCCTCCG+CGG | 0.716164 | 4.1:-15501724 | MS.gene34873:CDS |
| AAAGGTAAGAAAACCACCGA+CGG | 0.721265 | 4.1:-15501769 | MS.gene34873:CDS |
| ATGCGCGTAACAATTCAAGA+CGG | 0.746228 | 4.1:-15501883 | MS.gene34873:CDS |
| TGGAAACAACCTCTTCGCCG+CGG | 0.747245 | 4.1:+15501707 | None:intergenic |
| ACAGGAACACCACTACCAGG+AGG | 0.753038 | 4.1:+15501205 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATGTATTGAAGCATTT+TGG | + | chr4.1:15501163-15501182 | None:intergenic | 25.0% |
| ! | GTGGTTTTCTTACCTTTTAC+CGG | + | chr4.1:15501300-15501319 | None:intergenic | 35.0% |
| AAAGGTAAGAAAACCACCGA+CGG | - | chr4.1:15501303-15501322 | MS.gene34873:CDS | 40.0% | |
| ATGCGCGTAACAATTCAAGA+CGG | - | chr4.1:15501189-15501208 | MS.gene34873:CDS | 40.0% | |
| CTTGAATTGTTACGCGCATA+CGG | + | chr4.1:15501188-15501207 | None:intergenic | 40.0% | |
| ! | GTTGTTTCCATGACTGTTGA+AGG | - | chr4.1:15501378-15501397 | MS.gene34873:CDS | 40.0% |
| ! | GTTTTCTTACCTTTTACCGG+TGG | + | chr4.1:15501297-15501316 | None:intergenic | 40.0% |
| ACAGTTATTCAAGCTCAGCC+TGG | - | chr4.1:15501504-15501523 | MS.gene34873:CDS | 45.0% | |
| AGAGTTTCGCAAACTTCCAC+CGG | - | chr4.1:15501278-15501297 | MS.gene34873:CDS | 45.0% | |
| AGCAGCAGCATTAACAGCTT+TGG | + | chr4.1:15501430-15501449 | None:intergenic | 45.0% | |
| AGCTGTTAATGCTGCTGCTA+TGG | - | chr4.1:15501431-15501450 | MS.gene34873:CDS | 45.0% | |
| ATAGGTCTCTGTCCAAACTG+AGG | + | chr4.1:15501762-15501781 | None:intergenic | 45.0% | |
| CAGTTTGGACAGAGACCTAT+GGG | - | chr4.1:15501762-15501781 | MS.gene34873:CDS | 45.0% | |
| TCAACTCGTCGGAAAGTTCA+TGG | - | chr4.1:15501215-15501234 | MS.gene34873:CDS | 45.0% | |
| TCAGTTTGGACAGAGACCTA+TGG | - | chr4.1:15501761-15501780 | MS.gene34873:CDS | 45.0% | |
| TGAGCTTGAATAACTGTCGC+CGG | + | chr4.1:15501501-15501520 | None:intergenic | 45.0% | |
| AAGACAGGAACACCACTACC+AGG | + | chr4.1:15501873-15501892 | None:intergenic | 50.0% | |
| AGGAGGACCTTCAACAGTCA+TGG | + | chr4.1:15501388-15501407 | None:intergenic | 50.0% | |
| ATTTGCGGCTGCATCATACC+AGG | + | chr4.1:15501567-15501586 | None:intergenic | 50.0% | |
| CGAGAACGAGATTCATGTGG+CGG | + | chr4.1:15501248-15501267 | None:intergenic | 50.0% | |
| CGCAAACTTCCACCGGTAAA+AGG | - | chr4.1:15501285-15501304 | MS.gene34873:CDS | 50.0% | |
| CGCCACATGAATCTCGTTCT+CGG | - | chr4.1:15501246-15501265 | MS.gene34873:CDS | 50.0% | |
| GTCTCTGTCCAAACTGAGGA+GGG | + | chr4.1:15501758-15501777 | None:intergenic | 50.0% | |
| GTTAATGCTGCTGCTATGGC+AGG | - | chr4.1:15501435-15501454 | MS.gene34873:CDS | 50.0% | |
| TCTCTGTCCAAACTGAGGAG+GGG | + | chr4.1:15501757-15501776 | None:intergenic | 50.0% | |
| TTGGAGCGAGATTCTTCAGG+AGG | + | chr4.1:15501411-15501430 | None:intergenic | 50.0% | |
| ! | GGTAGTGGTGTTCCTGTCTT+TGG | - | chr4.1:15501873-15501892 | MS.gene34873:CDS | 50.0% |
| ! | TGTTGCTGCTGCTGCTGATT+TGG | + | chr4.1:15501927-15501946 | None:intergenic | 50.0% |
| !! | GCTTTGGAGCGAGATTCTTC+AGG | + | chr4.1:15501414-15501433 | None:intergenic | 50.0% |
| ACAGGAACACCACTACCAGG+AGG | + | chr4.1:15501870-15501889 | None:intergenic | 55.0% | |
| ATACCAAATTGCGGCGGAGG+AGG | + | chr4.1:15501732-15501751 | None:intergenic | 55.0% | |
| ATCATCTGTCCAGGAGGAGG+TGG | + | chr4.1:15501789-15501808 | None:intergenic | 55.0% | |
| ATGCCATATCCCGGTATGCC+AGG | - | chr4.1:15501648-15501667 | MS.gene34873:CDS | 55.0% | |
| CAAGACGGTCGTCAACTCGT+CGG | - | chr4.1:15501204-15501223 | MS.gene34873:CDS | 55.0% | |
| CCACCAGGATACGAAACTGG+TGG | + | chr4.1:15501597-15501616 | None:intergenic | 55.0% | |
| CCACCAGTTTCGTATCCTGG+TGG | - | chr4.1:15501594-15501613 | MS.gene34873:CDS | 55.0% | |
| CCTCCTCATCCTGGAATGCA+GGG | - | chr4.1:15501819-15501838 | MS.gene34873:CDS | 55.0% | |
| CCTCCTGGACAGATGATGAG+AGG | - | chr4.1:15501792-15501811 | MS.gene34873:CDS | 55.0% | |
| CCTCTCATCATCTGTCCAGG+AGG | + | chr4.1:15501795-15501814 | None:intergenic | 55.0% | |
| CCTGGTCAGATGCCATATCC+CGG | - | chr4.1:15501639-15501658 | MS.gene34873:CDS | 55.0% | |
| CGAGATTCTTCAGGAGGAGG+AGG | + | chr4.1:15501405-15501424 | None:intergenic | 55.0% | |
| CGCCGAGAACGAGATTCATG+TGG | + | chr4.1:15501251-15501270 | None:intergenic | 55.0% | |
| CGTCCACCAGTTTCGTATCC+TGG | - | chr4.1:15501591-15501610 | MS.gene34873:CDS | 55.0% | |
| CTCATCATCTGTCCAGGAGG+AGG | + | chr4.1:15501792-15501811 | None:intergenic | 55.0% | |
| CTCCTCATCCTGGAATGCAG+GGG | - | chr4.1:15501820-15501839 | MS.gene34873:CDS | 55.0% | |
| CTCTGTCCAAACTGAGGAGG+GGG | + | chr4.1:15501756-15501775 | None:intergenic | 55.0% | |
| GAGATTCATGTGGCGGTCGA+AGG | + | chr4.1:15501241-15501260 | None:intergenic | 55.0% | |
| GAGCGAGATTCTTCAGGAGG+AGG | + | chr4.1:15501408-15501427 | None:intergenic | 55.0% | |
| GCTATGGCAGGTCCTGGAAT+TGG | - | chr4.1:15501447-15501466 | MS.gene34873:CDS | 55.0% | |
| GCTTGAATAACTGTCGCCGG+AGG | + | chr4.1:15501498-15501517 | None:intergenic | 55.0% | |
| GGACCACCAGGATACGAAAC+TGG | + | chr4.1:15501600-15501619 | None:intergenic | 55.0% | |
| GGATATGGCATCTGACCAGG+CGG | + | chr4.1:15501639-15501658 | None:intergenic | 55.0% | |
| GGTCCTCTCATCATCTGTCC+AGG | + | chr4.1:15501798-15501817 | None:intergenic | 55.0% | |
| GGTCTCGGAGGAGCAAATTG+CGG | + | chr4.1:15501702-15501721 | None:intergenic | 55.0% | |
| GGTCTCTGTCCAAACTGAGG+AGG | + | chr4.1:15501759-15501778 | None:intergenic | 55.0% | |
| TCATCTGTCCAGGAGGAGGT+GGG | + | chr4.1:15501788-15501807 | None:intergenic | 55.0% | |
| TCCTCCTCATCCTGGAATGC+AGG | - | chr4.1:15501818-15501837 | MS.gene34873:CDS | 55.0% | |
| TGAATAACTGTCGCCGGAGG+AGG | + | chr4.1:15501495-15501514 | None:intergenic | 55.0% | |
| TGCATTCCAGGATGAGGAGG+AGG | + | chr4.1:15501819-15501838 | None:intergenic | 55.0% | |
| TGGAAACAACCTCTTCGCCG+CGG | + | chr4.1:15501368-15501387 | None:intergenic | 55.0% | |
| ! | ACTGGTGGACGCGAGATTTG+CGG | + | chr4.1:15501582-15501601 | None:intergenic | 55.0% |
| ! | CAATTTGCTCCTCCGAGACC+TGG | - | chr4.1:15501702-15501721 | MS.gene34873:CDS | 55.0% |
| ! | CTGGAATTGGTCGTGCTGCT+GGG | - | chr4.1:15501460-15501479 | MS.gene34873:CDS | 55.0% |
| ! | GGAGGGGGCATACCAAATTG+CGG | + | chr4.1:15501741-15501760 | None:intergenic | 55.0% |
| !! | CTGCTGCTGATTTGGAGGAG+GGG | + | chr4.1:15501919-15501938 | None:intergenic | 55.0% |
| !! | GCTGCTGCTGATTTGGAGGA+GGG | + | chr4.1:15501920-15501939 | None:intergenic | 55.0% |
| !! | TGCTGCTGATTTGGAGGAGG+GGG | + | chr4.1:15501918-15501937 | None:intergenic | 55.0% |
| !! | TGCTGCTGCTGATTTGGAGG+AGG | + | chr4.1:15501921-15501940 | None:intergenic | 55.0% |
| !! | TGCTGCTGCTGCTGATTTGG+AGG | + | chr4.1:15501924-15501943 | None:intergenic | 55.0% |
| !! | TGGGAGAGGTATTCCTCCTC+CGG | - | chr4.1:15501479-15501498 | MS.gene34873:CDS | 55.0% |
| AAACAACCTCTTCGCCGCGG+AGG | + | chr4.1:15501365-15501384 | None:intergenic | 60.0% | |
| ACACCACTACCAGGAGGAGG+AGG | + | chr4.1:15501864-15501883 | None:intergenic | 60.0% | |
| AGAGGACCTCCTCCTCATCC+TGG | - | chr4.1:15501810-15501829 | MS.gene34873:CDS | 60.0% | |
| ATGCCTCCTCCTCCTGGTAG+TGG | - | chr4.1:15501858-15501877 | MS.gene34873:CDS | 60.0% | |
| CCACCTGGCATACCGGGATA+TGG | + | chr4.1:15501654-15501673 | None:intergenic | 60.0% | |
| CCAGCAGCACGACCAATTCC+AGG | + | chr4.1:15501462-15501481 | None:intergenic | 60.0% | |
| CCATATCCCGGTATGCCAGG+TGG | - | chr4.1:15501651-15501670 | MS.gene34873:CDS | 60.0% | |
| CCCTGCATTCCAGGATGAGG+AGG | + | chr4.1:15501822-15501841 | None:intergenic | 60.0% | |
| CCGGGATATGGCATCTGACC+AGG | + | chr4.1:15501642-15501661 | None:intergenic | 60.0% | |
| CCTGGAATTGGTCGTGCTGC+TGG | - | chr4.1:15501459-15501478 | MS.gene34873:CDS | 60.0% | |
| CGAACAGGACCAGCAAGACC+AGG | + | chr4.1:15501525-15501544 | None:intergenic | 60.0% | |
| CTCGGAGGAGCAAATTGCGG+TGG | + | chr4.1:15501699-15501718 | None:intergenic | 60.0% | |
| GCTGGTCCTGTTCGTGGTGT+TGG | - | chr4.1:15501531-15501550 | MS.gene34873:CDS | 60.0% | |
| GGAACACCACTACCAGGAGG+AGG | + | chr4.1:15501867-15501886 | None:intergenic | 60.0% | |
| GGACGAGGTGGACCAAAGAC+AGG | + | chr4.1:15501888-15501907 | None:intergenic | 60.0% | |
| GGAGGAGCAAATTGCGGTGG+CGG | + | chr4.1:15501696-15501715 | None:intergenic | 60.0% | |
| GGCATACCAAATTGCGGCGG+AGG | + | chr4.1:15501735-15501754 | None:intergenic | 60.0% | |
| GGCTGCATCATACCAGGAGC+AGG | + | chr4.1:15501561-15501580 | None:intergenic | 60.0% | |
| GGTATGCCCCCTCCTCAGTT+TGG | - | chr4.1:15501747-15501766 | MS.gene34873:CDS | 60.0% | |
| GGTCCACCAACACCACGAAC+AGG | + | chr4.1:15501540-15501559 | None:intergenic | 60.0% | |
| GGTCTTGCTGGTCCTGTTCG+TGG | - | chr4.1:15501525-15501544 | MS.gene34873:CDS | 60.0% | |
| GTCTTTGGTCCACCTCGTCC+CGG | - | chr4.1:15501888-15501907 | MS.gene34873:CDS | 60.0% | |
| TATGGCATCTGACCAGGCGG+TGG | + | chr4.1:15501636-15501655 | None:intergenic | 60.0% | |
| TTTGCTCCTCCGAGACCTGG+TGG | - | chr4.1:15501705-15501724 | MS.gene34873:CDS | 60.0% | |
| ! | ATTGGTCGTGCTGCTGGGAG+AGG | - | chr4.1:15501465-15501484 | MS.gene34873:CDS | 60.0% |
| ! | ATTTGGAGGAGGGGGCATGC+CGG | + | chr4.1:15501910-15501929 | None:intergenic | 60.0% |
| ! | GGGGGCATACCAAATTGCGG+CGG | + | chr4.1:15501738-15501757 | None:intergenic | 60.0% |
| ! | GGTCCTGTTCGTGGTGTTGG+TGG | - | chr4.1:15501534-15501553 | MS.gene34873:CDS | 60.0% |
| !! | ACCAGGAGGAGGAGGCATTC+CGG | + | chr4.1:15501856-15501875 | None:intergenic | 60.0% |
| !! | CAAGCTCAGCCTGGTCTTGC+TGG | - | chr4.1:15501513-15501532 | MS.gene34873:CDS | 60.0% |
| CGAGTGTGCGGCGGTCTTCA+CGG | + | chr4.1:15501332-15501351 | None:intergenic | 65.0% | |
| CGCATCACTGGAGGACCACC+AGG | + | chr4.1:15501612-15501631 | None:intergenic | 65.0% | |
| CGGAGGACCACCTGGCATAC+CGG | + | chr4.1:15501661-15501680 | None:intergenic | 65.0% | |
| CGTGAAGACCGCCGCACACT+CGG | - | chr4.1:15501330-15501349 | MS.gene34873:CDS | 65.0% | |
| GCGGTCTTCACGGTCACCGT+CGG | + | chr4.1:15501322-15501341 | None:intergenic | 65.0% | |
| GCTGCTGCTATGGCAGGTCC+TGG | - | chr4.1:15501441-15501460 | MS.gene34873:CDS | 65.0% | |
| GGAGGACCACCTGGCATACC+GGG | + | chr4.1:15501660-15501679 | None:intergenic | 65.0% | |
| GGAGGAGAAGGCCGAGTGTG+CGG | + | chr4.1:15501344-15501363 | None:intergenic | 65.0% | |
| GGAGGAGGACCACCAGGTCT+CGG | + | chr4.1:15501717-15501736 | None:intergenic | 65.0% | |
| GGCCCCTGCATTCCAGGATG+AGG | + | chr4.1:15501825-15501844 | None:intergenic | 65.0% | |
| GGTCCTCCTCCGCCGCAATT+TGG | - | chr4.1:15501726-15501745 | MS.gene34873:CDS | 65.0% | |
| GTCTTCACGGTCACCGTCGG+TGG | + | chr4.1:15501319-15501338 | None:intergenic | 65.0% | |
| ! | TTTGGAGGAGGGGGCATGCC+GGG | + | chr4.1:15501909-15501928 | None:intergenic | 65.0% |
| !! | AATTGCGGTGGCGGACCACC+TGG | + | chr4.1:15501687-15501706 | None:intergenic | 65.0% |
| !! | CCAGGAGGAGGAGGCATTCC+GGG | + | chr4.1:15501855-15501874 | None:intergenic | 65.0% |
| !! | GGTGTTGGTGGACCTGCTCC+TGG | - | chr4.1:15501546-15501565 | MS.gene34873:CDS | 65.0% |
| CAACCTCTTCGCCGCGGAGG+AGG | + | chr4.1:15501362-15501381 | None:intergenic | 70.0% | |
| CCAGGAGGAGGTGGGCCCAT+AGG | + | chr4.1:15501780-15501799 | None:intergenic | 70.0% | |
| CCAGGCGGTGGACGCATCAC+TGG | + | chr4.1:15501624-15501643 | None:intergenic | 70.0% | |
| CCAGGTGGTCCTCCGAGACC+AGG | - | chr4.1:15501666-15501685 | MS.gene34873:CDS | 70.0% | |
| CCAGTGATGCGTCCACCGCC+TGG | - | chr4.1:15501621-15501640 | MS.gene34873:CDS | 70.0% | |
| CCCGGAATGCCTCCTCCTCC+TGG | - | chr4.1:15501852-15501871 | MS.gene34873:CDS | 70.0% | |
| CCTATGGGCCCACCTCCTCC+TGG | - | chr4.1:15501777-15501796 | MS.gene34873:CDS | 70.0% | |
| CCTGGTCTCGGAGGACCACC+TGG | + | chr4.1:15501669-15501688 | None:intergenic | 70.0% | |
| CTCGGCCTTCTCCTCCTCCG+CGG | - | chr4.1:15501348-15501367 | MS.gene34873:CDS | 70.0% | |
| CTTCGCCGCGGAGGAGGAGA+AGG | + | chr4.1:15501356-15501375 | None:intergenic | 70.0% | |
| GGAGAAGGCCGAGTGTGCGG+CGG | + | chr4.1:15501341-15501360 | None:intergenic | 70.0% | |
| GGAGGACCACCAGGTCTCGG+AGG | + | chr4.1:15501714-15501733 | None:intergenic | 70.0% | |
| GGCGGTGGACGCATCACTGG+AGG | + | chr4.1:15501621-15501640 | None:intergenic | 70.0% | |
| GGTGGTCCTCCGAGACCAGG+TGG | - | chr4.1:15501669-15501688 | MS.gene34873:CDS | 70.0% | |
| TCTCCTCCTCCGCGGCGAAG+AGG | - | chr4.1:15501356-15501375 | MS.gene34873:CDS | 70.0% | |
| !! | GGAGGAGGCATTCCGGGACG+AGG | + | chr4.1:15501849-15501868 | None:intergenic | 70.0% |
| !! | GGAGGCATTCCGGGACGAGG+CGG | + | chr4.1:15501846-15501865 | None:intergenic | 70.0% |
| !! | GGTGGCGGACCACCTGGTCT+CGG | + | chr4.1:15501681-15501700 | None:intergenic | 70.0% |
| ATGCAGGGGCCGCCTCGTCC+CGG | - | chr4.1:15501834-15501853 | MS.gene34873:CDS | 75.0% | |
| CGAGGCGGCCCCTGCATTCC+AGG | + | chr4.1:15501831-15501850 | None:intergenic | 75.0% | |
| GGCGGACCACCTGGTCTCGG+AGG | + | chr4.1:15501678-15501697 | None:intergenic | 75.0% | |
| TGCGGCGGAGGAGGACCACC+AGG | + | chr4.1:15501723-15501742 | None:intergenic | 75.0% | |
| !! | GGAGGGGGCATGCCGGGACG+AGG | + | chr4.1:15501903-15501922 | None:intergenic | 80.0% |
| !! | GGGGGCATGCCGGGACGAGG+TGG | + | chr4.1:15501900-15501919 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 15501141 | 15501953 | 15501141 | ID=MS.gene34873 |
| chr4.1 | mRNA | 15501141 | 15501953 | 15501141 | ID=MS.gene34873.t1;Parent=MS.gene34873 |
| chr4.1 | exon | 15501141 | 15501953 | 15501141 | ID=MS.gene34873.t1.exon1;Parent=MS.gene34873.t1 |
| chr4.1 | CDS | 15501141 | 15501953 | 15501141 | ID=cds.MS.gene34873.t1;Parent=MS.gene34873.t1 |
| Gene Sequence |
| Protein sequence |
