Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34953.t1 | ACJ84591.1 | 97.7 | 213 | 5 | 0 | 1 | 213 | 1 | 213 | 1.60E-113 | 418.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34953.t1 | Q67ZF6 | 62.9 | 205 | 73 | 3 | 6 | 208 | 17 | 220 | 1.8e-65 | 250.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34953.t1 | B7FIL2 | 97.7 | 213 | 5 | 0 | 1 | 213 | 1 | 213 | 1.2e-113 | 418.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054118 | MS.gene34953 | 0.82017 | 7.90E-53 | -1.69E-46 |
| MS.gene058909 | MS.gene34953 | 0.82209 | 2.85E-53 | -1.69E-46 |
| MS.gene058912 | MS.gene34953 | 0.824364 | 8.40E-54 | -1.69E-46 |
| MS.gene060825 | MS.gene34953 | 0.812637 | 3.84E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78729 | MS.gene34953 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34953.t1 | MTR_1g033390 | 59.048 | 210 | 84 | 2 | 1 | 208 | 1 | 210 | 1.04e-84 | 250 |
| MS.gene34953.t1 | MTR_1g033360 | 43.750 | 208 | 114 | 3 | 1 | 206 | 7 | 213 | 8.70e-57 | 179 |
| MS.gene34953.t1 | MTR_1g100643 | 39.604 | 202 | 117 | 2 | 9 | 205 | 13 | 214 | 9.46e-53 | 169 |
| MS.gene34953.t1 | MTR_6g017105 | 36.869 | 198 | 119 | 3 | 11 | 202 | 16 | 213 | 7.44e-40 | 136 |
| MS.gene34953.t1 | MTR_1g100643 | 37.267 | 161 | 96 | 2 | 50 | 205 | 1 | 161 | 9.96e-36 | 124 |
| MS.gene34953.t1 | MTR_5g053250 | 35.079 | 191 | 111 | 6 | 10 | 189 | 17 | 205 | 1.02e-26 | 102 |
| MS.gene34953.t1 | MTR_5g053250 | 38.356 | 146 | 83 | 4 | 50 | 189 | 1 | 145 | 1.22e-23 | 93.2 |
| MS.gene34953.t1 | MTR_5g053250 | 30.734 | 218 | 111 | 7 | 10 | 189 | 17 | 232 | 6.13e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34953.t1 | AT1G14730 | 62.319 | 207 | 75 | 3 | 6 | 210 | 17 | 222 | 5.96e-87 | 256 |
| MS.gene34953.t1 | AT4G25570 | 39.048 | 210 | 123 | 3 | 1 | 205 | 5 | 214 | 6.61e-50 | 162 |
| MS.gene34953.t1 | AT4G25570 | 39.048 | 210 | 123 | 3 | 1 | 205 | 46 | 255 | 8.04e-49 | 161 |
| MS.gene34953.t1 | AT5G38630 | 37.073 | 205 | 123 | 3 | 8 | 206 | 13 | 217 | 2.81e-43 | 145 |
| MS.gene34953.t1 | AT1G26100 | 34.104 | 173 | 102 | 5 | 8 | 177 | 13 | 176 | 6.45e-24 | 95.5 |
Find 50 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTATAGTACCTCAATTT+TGG | 0.192371 | 4.4:-17710959 | MS.gene34953:CDS |
| CATTTCATTGCCATAGTTCT+TGG | 0.208807 | 4.4:-17709909 | MS.gene34953:CDS |
| CCCTCATCCTTATGCTTGTT+TGG | 0.262566 | 4.4:-17710915 | MS.gene34953:CDS |
| GGTCTAGCAATTCTCTTGTT+TGG | 0.264168 | 4.4:-17709274 | MS.gene34953:CDS |
| ATTCACTTCAAGAAACAATA+TGG | 0.266766 | 4.4:+17709221 | None:intergenic |
| ATGTTTACAGCCTCCATTCA+TGG | 0.312973 | 4.4:-17709833 | MS.gene34953:CDS |
| GCAATTTGTGCTGCACTAAC+AGG | 0.327192 | 4.4:-17709367 | MS.gene34953:CDS |
| GCCATAGTTCTTGGAATTGT+TGG | 0.333746 | 4.4:-17709900 | MS.gene34953:CDS |
| CTCCATTCATGGATTGGCCT+TGG | 0.364175 | 4.4:-17709822 | MS.gene34953:CDS |
| TGATGAGATGGGATTCTCTT+TGG | 0.375896 | 4.4:+17709305 | None:intergenic |
| TGCTGCACTAACAGGTTTGA+TGG | 0.381294 | 4.4:-17709359 | MS.gene34953:CDS |
| ACCAACAATTCCAAGAACTA+TGG | 0.394185 | 4.4:+17709899 | None:intergenic |
| TACAGCCTCCATTCATGGAT+TGG | 0.402679 | 4.4:-17709828 | MS.gene34953:CDS |
| TTCTGTGTTTCATGTGTGCC+TGG | 0.408328 | 4.4:+17709951 | None:intergenic |
| TGTGGATATGACAGTTGGTT+TGG | 0.414085 | 4.4:-17709245 | MS.gene34953:CDS |
| AACCCAAAGAACATCAGAAA+AGG | 0.444479 | 4.4:+17710734 | None:intergenic |
| GACCAGTAAAATTGATGAGA+TGG | 0.463258 | 4.4:+17709293 | None:intergenic |
| GGACTGACATTCATGTTTCA+AGG | 0.471960 | 4.4:-17709457 | MS.gene34953:CDS |
| TTCACTTCAAGAAACAATAT+GGG | 0.499824 | 4.4:+17709222 | None:intergenic |
| CTGCAAGCCAAACAAGCAAA+AGG | 0.518582 | 4.4:+17709797 | None:intergenic |
| GCAGCAACCAAACAAGCATA+AGG | 0.521345 | 4.4:+17710908 | None:intergenic |
| CAACCAAGTTCACCATATCA+TGG | 0.523417 | 4.4:+17709856 | None:intergenic |
| AAGACAATCAAGGGCTGCAA+TGG | 0.527559 | 4.4:-17709431 | MS.gene34953:CDS |
| ATGTCTTACCACACAGTACC+AGG | 0.530006 | 4.4:-17709969 | MS.gene34953:CDS |
| CATATCATGGAACTTGAAAA+CGG | 0.532163 | 4.4:+17709869 | None:intergenic |
| CACTAACAGGTTTGATGGAG+AGG | 0.533891 | 4.4:-17709354 | MS.gene34953:CDS |
| ACCAGTAAAATTGATGAGAT+GGG | 0.537855 | 4.4:+17709294 | None:intergenic |
| TGCCAAGGCCAATCCATGAA+TGG | 0.541924 | 4.4:+17709820 | None:intergenic |
| ATGGCTCCATGGCACATAGC+TGG | 0.542007 | 4.4:-17709412 | MS.gene34953:CDS |
| GTTCCATGATATGGTGAACT+TGG | 0.544949 | 4.4:-17709859 | MS.gene34953:CDS |
| ACCAAACAAGCATAAGGATG+AGG | 0.552123 | 4.4:+17710914 | None:intergenic |
| CAAGGGCTGCAATGGCTCCA+TGG | 0.553808 | 4.4:-17709423 | MS.gene34953:CDS |
| TTCAAGGAAGAAGACAATCA+AGG | 0.557731 | 4.4:-17709441 | MS.gene34953:CDS |
| ACCCAAAGAACATCAGAAAA+GGG | 0.558431 | 4.4:+17710735 | None:intergenic |
| CAAACAAGCAAAAGGTGCCA+AGG | 0.564883 | 4.4:+17709805 | None:intergenic |
| TCAAGGAAGAAGACAATCAA+GGG | 0.567109 | 4.4:-17709440 | MS.gene34953:CDS |
| CTACCACCAGCTATGTGCCA+TGG | 0.572574 | 4.4:+17709406 | None:intergenic |
| GAGGGGATTGAATATGACTC+TGG | 0.574307 | 4.4:-17710877 | MS.gene34953:CDS |
| TGGTTGCTGCATTACCGTGA+GGG | 0.574869 | 4.4:-17710895 | MS.gene34953:CDS |
| GGTTGCTGCATTACCGTGAG+GGG | 0.582408 | 4.4:-17710894 | MS.gene34953:CDS |
| CATACATTGAAAACACGAAG+TGG | 0.594783 | 4.4:+17710850 | None:intergenic |
| AGATGGGATTCTCTTTGGTG+TGG | 0.600431 | 4.4:+17709310 | None:intergenic |
| AAACAAGTGAGCCAAAATTG+AGG | 0.600449 | 4.4:+17710948 | None:intergenic |
| CCAAACAAGCATAAGGATGA+GGG | 0.611153 | 4.4:+17710915 | None:intergenic |
| CAAGGCCAATCCATGAATGG+AGG | 0.654155 | 4.4:+17709823 | None:intergenic |
| AGTCATATTCAATCCCCTCA+CGG | 0.654951 | 4.4:+17710881 | None:intergenic |
| AATATATACCTTGACCAACA+AGG | 0.656313 | 4.4:+17710705 | None:intergenic |
| GCTCCATGGCACATAGCTGG+TGG | 0.673506 | 4.4:-17709409 | MS.gene34953:CDS |
| TTGGTTGCTGCATTACCGTG+AGG | 0.689331 | 4.4:-17710896 | MS.gene34953:CDS |
| CATGTGTGCCTGGTACTGTG+TGG | 0.717385 | 4.4:+17709961 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTAGCTTTAAAATATA+AGG | + | chr4.4:17709893-17709912 | None:intergenic | 10.0% |
| !! | AAGAAACAAAGTAAAAATTA+GGG | - | chr4.4:17710071-17710090 | MS.gene34953:intron | 15.0% |
| !! | TAAATTCAAATGTTATTGTA+GGG | + | chr4.4:17710433-17710452 | None:intergenic | 15.0% |
| !! | TAAGAAACAAAGTAAAAATT+AGG | - | chr4.4:17710070-17710089 | MS.gene34953:intron | 15.0% |
| !! | TTAAATTCAAATGTTATTGT+AGG | + | chr4.4:17710434-17710453 | None:intergenic | 15.0% |
| !! | TTACAGTTAAAAATAAAAAC+TGG | - | chr4.4:17710100-17710119 | MS.gene34953:intron | 15.0% |
| !!! | AATTTTTTATACTTTACAAC+TGG | - | chr4.4:17709390-17709409 | MS.gene34953:CDS | 15.0% |
| !!! | TTTATTTCAAGTTTTAAGAT+AGG | - | chr4.4:17709511-17709530 | MS.gene34953:intron | 15.0% |
| !! | TAAGAAATATGCAAATTCTA+TGG | + | chr4.4:17709860-17709879 | None:intergenic | 20.0% |
| !! | TATTTCAGTTTACTAGTATT+AGG | + | chr4.4:17710141-17710160 | None:intergenic | 20.0% |
| !!! | AATATAAACTATTTTTGCAG+TGG | - | chr4.4:17710706-17710725 | MS.gene34953:intron | 20.0% |
| ! | AATTACTTGACTGATTGAAT+TGG | - | chr4.4:17710176-17710195 | MS.gene34953:intron | 25.0% |
| ! | TAAATTTAATAGAATGTCGC+AGG | + | chr4.4:17710665-17710684 | None:intergenic | 25.0% |
| ! | TTGAATTTAACCAAAAAGCA+TGG | - | chr4.4:17710444-17710463 | MS.gene34953:intron | 25.0% |
| !! | TTCTTATAGTACCTCAATTT+TGG | - | chr4.4:17709233-17709252 | MS.gene34953:CDS | 25.0% |
| !!! | ATTTCAAGTTTTAAGATAGG+TGG | - | chr4.4:17709514-17709533 | MS.gene34953:intron | 25.0% |
| !!! | TGTAAACTTCTACTTTTCAA+AGG | + | chr4.4:17709585-17709604 | None:intergenic | 25.0% |
| !!! | TTCAAACGATTTTGAAGTAT+TGG | - | chr4.4:17709809-17709828 | MS.gene34953:CDS | 25.0% |
| !!! | TTTTGAAGTATTGGTCTATT+TGG | - | chr4.4:17709818-17709837 | MS.gene34953:CDS | 25.0% |
| AAATCGTTTGAAAACCTGAA+TGG | + | chr4.4:17709801-17709820 | None:intergenic | 30.0% | |
| AATATATACCTTGACCAACA+AGG | + | chr4.4:17709490-17709509 | None:intergenic | 30.0% | |
| ACCAGTAAAATTGATGAGAT+GGG | + | chr4.4:17710901-17710920 | None:intergenic | 30.0% | |
| AGTCAAGTAATTGATATCTG+AGG | + | chr4.4:17710168-17710187 | None:intergenic | 30.0% | |
| ATATTTACATCGAGACATTG+AGG | - | chr4.4:17709608-17709627 | MS.gene34953:intron | 30.0% | |
| CATATCATGGAACTTGAAAA+CGG | + | chr4.4:17710326-17710345 | None:intergenic | 30.0% | |
| GAAATATGCAAATTCTATGG+TGG | + | chr4.4:17709857-17709876 | None:intergenic | 30.0% | |
| ! | ACTTTGGAAGTAGAAGTTTA+TGG | + | chr4.4:17709765-17709784 | None:intergenic | 30.0% |
| ! | GTTCTTCTTGTTATAACATG+TGG | + | chr4.4:17709743-17709762 | None:intergenic | 30.0% |
| ! | TGAATTTTTCTCCATTATGC+AGG | - | chr4.4:17709430-17709449 | MS.gene34953:CDS | 30.0% |
| AAACAAGTGAGCCAAAATTG+AGG | + | chr4.4:17709247-17709266 | None:intergenic | 35.0% | |
| AACCCAAAGAACATCAGAAA+AGG | + | chr4.4:17709461-17709480 | None:intergenic | 35.0% | |
| ACCAACAATTCCAAGAACTA+TGG | + | chr4.4:17710296-17710315 | None:intergenic | 35.0% | |
| ACCCAAAGAACATCAGAAAA+GGG | + | chr4.4:17709460-17709479 | None:intergenic | 35.0% | |
| CATACATTGAAAACACGAAG+TGG | + | chr4.4:17709345-17709364 | None:intergenic | 35.0% | |
| CATTTCATTGCCATAGTTCT+TGG | - | chr4.4:17710283-17710302 | MS.gene34953:intron | 35.0% | |
| GACCAGTAAAATTGATGAGA+TGG | + | chr4.4:17710902-17710921 | None:intergenic | 35.0% | |
| TCAAGGAAGAAGACAATCAA+GGG | - | chr4.4:17710752-17710771 | MS.gene34953:intron | 35.0% | |
| TTCAAGGAAGAAGACAATCA+AGG | - | chr4.4:17710751-17710770 | MS.gene34953:intron | 35.0% | |
| ! | ACCCTTTTCTGATGTTCTTT+GGG | - | chr4.4:17709456-17709475 | MS.gene34953:CDS | 35.0% |
| ! | ATTGGTCTATTTGGTCACTA+TGG | - | chr4.4:17709827-17709846 | MS.gene34953:CDS | 35.0% |
| ! | GTTTTTGTGGATATGACAGT+TGG | - | chr4.4:17710942-17710961 | MS.gene34953:CDS | 35.0% |
| ! | TCCCATCTCATCAATTTTAC+TGG | - | chr4.4:17710897-17710916 | MS.gene34953:CDS | 35.0% |
| ! | TTCATTTTCCTTGTTGGTCA+AGG | - | chr4.4:17709479-17709498 | MS.gene34953:intron | 35.0% |
| ! | TTGTTCAAAGCCATGCTTTT+TGG | + | chr4.4:17710457-17710476 | None:intergenic | 35.0% |
| ! | TTTCAAGTAATGATCCACGT+CGG | + | chr4.4:17709541-17709560 | None:intergenic | 35.0% |
| !! | TCTCTTGTTTGGAGTTTTTG+TGG | - | chr4.4:17710929-17710948 | MS.gene34953:CDS | 35.0% |
| !! | TGGTAGAGCACTATTTTTCA+TGG | - | chr4.4:17710803-17710822 | MS.gene34953:intron | 35.0% |
| !! | TTTGGGTTCATTTTCCTTGT+TGG | - | chr4.4:17709473-17709492 | MS.gene34953:intron | 35.0% |
| !!! | ATGTCGCAGGTTAGTTTTTT+AGG | + | chr4.4:17710652-17710671 | None:intergenic | 35.0% |
| !!! | CGTTTTCAAGTTCCATGATA+TGG | - | chr4.4:17710324-17710343 | MS.gene34953:intron | 35.0% |
| !!! | CTATTTTTGCAGTGGCTTTT+TGG | - | chr4.4:17710714-17710733 | MS.gene34953:CDS | 35.0% |
| !!! | TCAATTTTGGCTCACTTGTT+TGG | - | chr4.4:17709246-17709265 | MS.gene34953:CDS | 35.0% |
| !!! | TGTCGCAGGTTAGTTTTTTA+GGG | + | chr4.4:17710651-17710670 | None:intergenic | 35.0% |
| AAAAGGGTGAACCTGCATAA+TGG | + | chr4.4:17709444-17709463 | None:intergenic | 40.0% | |
| ACCAAACAAGCATAAGGATG+AGG | + | chr4.4:17709281-17709300 | None:intergenic | 40.0% | |
| AGTCATATTCAATCCCCTCA+CGG | + | chr4.4:17709314-17709333 | None:intergenic | 40.0% | |
| ATGTTTACAGCCTCCATTCA+TGG | - | chr4.4:17710359-17710378 | MS.gene34953:intron | 40.0% | |
| CAACCAAGTTCACCATATCA+TGG | + | chr4.4:17710339-17710358 | None:intergenic | 40.0% | |
| CCAAACAAGCATAAGGATGA+GGG | + | chr4.4:17709280-17709299 | None:intergenic | 40.0% | |
| GCCATAGTTCTTGGAATTGT+TGG | - | chr4.4:17710292-17710311 | MS.gene34953:intron | 40.0% | |
| GGACTGACATTCATGTTTCA+AGG | - | chr4.4:17710735-17710754 | MS.gene34953:CDS | 40.0% | |
| GGTCTAGCAATTCTCTTGTT+TGG | - | chr4.4:17710918-17710937 | MS.gene34953:CDS | 40.0% | |
| GTTCCATGATATGGTGAACT+TGG | - | chr4.4:17710333-17710352 | MS.gene34953:intron | 40.0% | |
| TACGCTGAAAGACTTTCAGA+AGG | - | chr4.4:17710588-17710607 | MS.gene34953:intron | 40.0% | |
| TGATGAGATGGGATTCTCTT+TGG | + | chr4.4:17710890-17710909 | None:intergenic | 40.0% | |
| TGCAACATCACTTACCATTC+AGG | - | chr4.4:17709784-17709803 | MS.gene34953:intron | 40.0% | |
| TGGTAAGTGATGTTGCACTT+TGG | + | chr4.4:17709781-17709800 | None:intergenic | 40.0% | |
| TGTCCAAAAGATGTAGCGAT+GGG | - | chr4.4:17710561-17710580 | MS.gene34953:intron | 40.0% | |
| TGTGGATATGACAGTTGGTT+TGG | - | chr4.4:17710947-17710966 | MS.gene34953:CDS | 40.0% | |
| ! | CACCCTTTTCTGATGTTCTT+TGG | - | chr4.4:17709455-17709474 | MS.gene34953:CDS | 40.0% |
| ! | GACATTGAGGTGTTTGATGT+CGG | - | chr4.4:17709621-17709640 | MS.gene34953:intron | 40.0% |
| AAGACAATCAAGGGCTGCAA+TGG | - | chr4.4:17710761-17710780 | MS.gene34953:intron | 45.0% | |
| AGATGGGATTCTCTTTGGTG+TGG | + | chr4.4:17710885-17710904 | None:intergenic | 45.0% | |
| ATGTCTTACCACACAGTACC+AGG | - | chr4.4:17710223-17710242 | MS.gene34953:intron | 45.0% | |
| CAAAAGATGTAGCGATGGGT+TGG | - | chr4.4:17710565-17710584 | MS.gene34953:intron | 45.0% | |
| CACTAACAGGTTTGATGGAG+AGG | - | chr4.4:17710838-17710857 | MS.gene34953:intron | 45.0% | |
| CCCTCATCCTTATGCTTGTT+TGG | - | chr4.4:17709277-17709296 | MS.gene34953:CDS | 45.0% | |
| CTGCAAGCCAAACAAGCAAA+AGG | + | chr4.4:17710398-17710417 | None:intergenic | 45.0% | |
| CTGTCCAAAAGATGTAGCGA+TGG | - | chr4.4:17710560-17710579 | MS.gene34953:intron | 45.0% | |
| GAGGGGATTGAATATGACTC+TGG | - | chr4.4:17709315-17709334 | MS.gene34953:CDS | 45.0% | |
| GCAATTTGTGCTGCACTAAC+AGG | - | chr4.4:17710825-17710844 | MS.gene34953:intron | 45.0% | |
| GCAGCAACCAAACAAGCATA+AGG | + | chr4.4:17709287-17709306 | None:intergenic | 45.0% | |
| TACAGCCTCCATTCATGGAT+TGG | - | chr4.4:17710364-17710383 | MS.gene34953:intron | 45.0% | |
| TGCTGCACTAACAGGTTTGA+TGG | - | chr4.4:17710833-17710852 | MS.gene34953:intron | 45.0% | |
| TTCTGTGTTTCATGTGTGCC+TGG | + | chr4.4:17710244-17710263 | None:intergenic | 45.0% | |
| ! | CAACCCATCGCTACATCTTT+TGG | + | chr4.4:17710567-17710586 | None:intergenic | 45.0% |
| ! | CGCTACATCTTTTGGACAGT+GGG | + | chr4.4:17710559-17710578 | None:intergenic | 45.0% |
| ! | CTTGGCACCTTTTGCTTGTT+TGG | - | chr4.4:17710388-17710407 | MS.gene34953:intron | 45.0% |
| ! | GCTACATCTTTTGGACAGTG+GGG | + | chr4.4:17710558-17710577 | None:intergenic | 45.0% |
| ! | TCGCTACATCTTTTGGACAG+TGG | + | chr4.4:17710560-17710579 | None:intergenic | 45.0% |
| !! | CAAACAAGCAAAAGGTGCCA+AGG | + | chr4.4:17710390-17710409 | None:intergenic | 45.0% |
| !!! | CTTTTGCTTGTTTGGCTTGC+AGG | - | chr4.4:17710396-17710415 | MS.gene34953:intron | 45.0% |
| CAAGGCCAATCCATGAATGG+AGG | + | chr4.4:17710372-17710391 | None:intergenic | 50.0% | |
| TGCCAAGGCCAATCCATGAA+TGG | + | chr4.4:17710375-17710394 | None:intergenic | 50.0% | |
| TGGTTGCTGCATTACCGTGA+GGG | - | chr4.4:17709297-17709316 | MS.gene34953:CDS | 50.0% | |
| TTAAGATAGGTGGTCCGACG+TGG | - | chr4.4:17709524-17709543 | MS.gene34953:intron | 50.0% | |
| TTGGTTGCTGCATTACCGTG+AGG | - | chr4.4:17709296-17709315 | MS.gene34953:CDS | 50.0% | |
| !! | CTCCATTCATGGATTGGCCT+TGG | - | chr4.4:17710370-17710389 | MS.gene34953:intron | 50.0% |
| ATGGCTCCATGGCACATAGC+TGG | - | chr4.4:17710780-17710799 | MS.gene34953:intron | 55.0% | |
| CATGTGTGCCTGGTACTGTG+TGG | + | chr4.4:17710234-17710253 | None:intergenic | 55.0% | |
| CTACCACCAGCTATGTGCCA+TGG | + | chr4.4:17710789-17710808 | None:intergenic | 55.0% | |
| GGTTGCTGCATTACCGTGAG+GGG | - | chr4.4:17709298-17709317 | MS.gene34953:CDS | 55.0% | |
| CAAGGGCTGCAATGGCTCCA+TGG | - | chr4.4:17710769-17710788 | MS.gene34953:intron | 60.0% | |
| GCTCCATGGCACATAGCTGG+TGG | - | chr4.4:17710783-17710802 | MS.gene34953:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17709228 | 17710986 | 17709228 | ID=MS.gene34953 |
| chr4.4 | mRNA | 17709228 | 17710986 | 17709228 | ID=MS.gene34953.t1;Parent=MS.gene34953 |
| chr4.4 | exon | 17710855 | 17710986 | 17710855 | ID=MS.gene34953.t1.exon1;Parent=MS.gene34953.t1 |
| chr4.4 | CDS | 17710855 | 17710986 | 17710855 | ID=cds.MS.gene34953.t1;Parent=MS.gene34953.t1 |
| chr4.4 | exon | 17710714 | 17710762 | 17710714 | ID=MS.gene34953.t1.exon2;Parent=MS.gene34953.t1 |
| chr4.4 | CDS | 17710714 | 17710762 | 17710714 | ID=cds.MS.gene34953.t1;Parent=MS.gene34953.t1 |
| chr4.4 | exon | 17709797 | 17709996 | 17709797 | ID=MS.gene34953.t1.exon3;Parent=MS.gene34953.t1 |
| chr4.4 | CDS | 17709797 | 17709996 | 17709797 | ID=cds.MS.gene34953.t1;Parent=MS.gene34953.t1 |
| chr4.4 | exon | 17709228 | 17709488 | 17709228 | ID=MS.gene34953.t1.exon4;Parent=MS.gene34953.t1 |
| chr4.4 | CDS | 17709228 | 17709488 | 17709228 | ID=cds.MS.gene34953.t1;Parent=MS.gene34953.t1 |
| Gene Sequence |
| Protein sequence |
