Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35018.t1 | XP_013457187.1 | 96.9 | 1029 | 32 | 0 | 1 | 1029 | 1 | 1029 | 0.00E+00 | 1960.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35018.t1 | Q6NPP4 | 47.4 | 1084 | 481 | 20 | 1 | 1029 | 1 | 1050 | 1.1e-240 | 834.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35018.t1 | A0A072UQ84 | 96.9 | 1029 | 32 | 0 | 1 | 1029 | 1 | 1029 | 0.0e+00 | 1960.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35018.t1 | TF | CAMTA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35018 | MS.gene002202 | PPI |
| MS.gene35018 | MS.gene01170 | PPI |
| MS.gene35018 | MS.gene061784 | PPI |
| MS.gene57296 | MS.gene35018 | PPI |
| MS.gene35018 | MS.gene28071 | PPI |
| MS.gene90181 | MS.gene35018 | PPI |
| MS.gene35018 | MS.gene047423 | PPI |
| MS.gene35018 | MS.gene70367 | PPI |
| MS.gene030815 | MS.gene35018 | PPI |
| MS.gene35018 | MS.gene028443 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35018.t1 | MTR_4g094215 | 97.862 | 1029 | 22 | 0 | 1 | 1029 | 1 | 1029 | 0.0 | 2102 |
| MS.gene35018.t1 | MTR_4g094215 | 97.767 | 1030 | 22 | 1 | 1 | 1029 | 1 | 1030 | 0.0 | 2097 |
| MS.gene35018.t1 | MTR_4g094215 | 97.740 | 885 | 20 | 0 | 1 | 885 | 1 | 885 | 0.0 | 1803 |
| MS.gene35018.t1 | MTR_2g008840 | 62.500 | 1080 | 314 | 12 | 1 | 1029 | 1 | 1040 | 0.0 | 1305 |
| MS.gene35018.t1 | MTR_2g008840 | 62.404 | 1040 | 300 | 12 | 41 | 1029 | 1 | 1000 | 0.0 | 1253 |
| MS.gene35018.t1 | MTR_2g008840 | 60.684 | 936 | 279 | 10 | 1 | 885 | 1 | 898 | 0.0 | 1082 |
| MS.gene35018.t1 | MTR_8g090205 | 40.302 | 1124 | 515 | 28 | 12 | 1027 | 8 | 1083 | 0.0 | 700 |
| MS.gene35018.t1 | MTR_8g090205 | 40.284 | 1127 | 517 | 28 | 9 | 1027 | 7 | 1085 | 0.0 | 700 |
| MS.gene35018.t1 | MTR_8g090205 | 40.459 | 1090 | 495 | 26 | 12 | 994 | 8 | 1050 | 0.0 | 688 |
| MS.gene35018.t1 | MTR_8g090205 | 40.439 | 1093 | 497 | 26 | 9 | 994 | 7 | 1052 | 0.0 | 688 |
| MS.gene35018.t1 | MTR_8g090205 | 51.042 | 672 | 281 | 13 | 382 | 1027 | 277 | 926 | 0.0 | 630 |
| MS.gene35018.t1 | MTR_8g090205 | 51.881 | 638 | 261 | 11 | 382 | 994 | 277 | 893 | 0.0 | 617 |
| MS.gene35018.t1 | MTR_8g090205 | 48.868 | 530 | 225 | 11 | 382 | 886 | 436 | 944 | 1.54e-148 | 467 |
| MS.gene35018.t1 | MTR_8g090205 | 37.152 | 323 | 161 | 8 | 9 | 309 | 7 | 309 | 2.47e-50 | 193 |
| MS.gene35018.t1 | MTR_8g080800 | 38.486 | 621 | 310 | 17 | 426 | 1023 | 389 | 960 | 1.76e-119 | 390 |
| MS.gene35018.t1 | MTR_8g080800 | 50.641 | 156 | 70 | 1 | 14 | 169 | 8 | 156 | 1.11e-42 | 169 |
| MS.gene35018.t1 | MTR_3g085050 | 39.261 | 568 | 305 | 13 | 426 | 984 | 375 | 911 | 2.36e-100 | 337 |
| MS.gene35018.t1 | MTR_3g085050 | 47.445 | 137 | 72 | 0 | 10 | 146 | 4 | 140 | 8.11e-37 | 150 |
| MS.gene35018.t1 | MTR_3g085050 | 39.261 | 568 | 305 | 13 | 426 | 984 | 375 | 911 | 5.73e-100 | 337 |
| MS.gene35018.t1 | MTR_3g085050 | 47.445 | 137 | 72 | 0 | 10 | 146 | 4 | 140 | 9.34e-37 | 150 |
| MS.gene35018.t1 | MTR_2g034650 | 32.432 | 629 | 350 | 18 | 384 | 981 | 301 | 885 | 4.84e-79 | 278 |
| MS.gene35018.t1 | MTR_2g034650 | 55.645 | 124 | 55 | 0 | 13 | 136 | 24 | 147 | 3.12e-37 | 152 |
| MS.gene35018.t1 | MTR_4g121840 | 32.039 | 618 | 366 | 15 | 384 | 981 | 314 | 897 | 6.48e-77 | 272 |
| MS.gene35018.t1 | MTR_4g121840 | 54.839 | 124 | 56 | 0 | 13 | 136 | 25 | 148 | 1.82e-30 | 130 |
| MS.gene35018.t1 | MTR_4g121840 | 32.039 | 618 | 366 | 15 | 384 | 981 | 284 | 867 | 7.52e-77 | 271 |
| MS.gene35018.t1 | MTR_4g121840 | 60.241 | 83 | 33 | 0 | 54 | 136 | 36 | 118 | 1.17e-19 | 95.5 |
| MS.gene35018.t1 | MTR_8g090200 | 27.455 | 448 | 256 | 13 | 115 | 537 | 10 | 413 | 2.51e-36 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35018.t1 | AT5G64220 | 50.282 | 1064 | 440 | 20 | 1 | 1010 | 1 | 1029 | 0.0 | 980 |
| MS.gene35018.t1 | AT5G64220 | 50.282 | 1064 | 440 | 20 | 1 | 1010 | 1 | 1029 | 0.0 | 980 |
| MS.gene35018.t1 | AT5G09410 | 51.243 | 1046 | 421 | 26 | 11 | 1024 | 14 | 1002 | 0.0 | 966 |
| MS.gene35018.t1 | AT5G09410 | 50.382 | 1046 | 412 | 26 | 11 | 1024 | 14 | 984 | 0.0 | 944 |
| MS.gene35018.t1 | AT5G09410 | 49.248 | 1064 | 415 | 27 | 11 | 1024 | 73 | 1061 | 0.0 | 911 |
| MS.gene35018.t1 | AT5G09410 | 48.986 | 937 | 389 | 26 | 120 | 1024 | 2 | 881 | 0.0 | 795 |
| MS.gene35018.t1 | AT2G22300 | 42.650 | 1034 | 484 | 21 | 13 | 993 | 13 | 990 | 0.0 | 746 |
| MS.gene35018.t1 | AT2G22300 | 42.650 | 1034 | 484 | 21 | 13 | 993 | 13 | 990 | 0.0 | 746 |
| MS.gene35018.t1 | AT2G22300 | 41.599 | 988 | 468 | 21 | 59 | 993 | 1 | 932 | 0.0 | 685 |
| MS.gene35018.t1 | AT1G67310 | 38.149 | 616 | 335 | 15 | 420 | 1015 | 419 | 1008 | 8.18e-102 | 343 |
| MS.gene35018.t1 | AT1G67310 | 48.000 | 125 | 65 | 0 | 11 | 135 | 34 | 158 | 2.52e-35 | 146 |
| MS.gene35018.t1 | AT3G16940 | 31.475 | 556 | 343 | 10 | 436 | 981 | 274 | 801 | 2.30e-73 | 260 |
| MS.gene35018.t1 | AT3G16940 | 53.906 | 128 | 59 | 0 | 21 | 148 | 4 | 131 | 7.01e-36 | 147 |
| MS.gene35018.t1 | AT3G16940 | 31.475 | 556 | 343 | 10 | 436 | 981 | 301 | 828 | 4.85e-73 | 259 |
| MS.gene35018.t1 | AT3G16940 | 52.206 | 136 | 65 | 0 | 13 | 148 | 23 | 158 | 1.22e-36 | 149 |
| MS.gene35018.t1 | AT3G16940 | 29.847 | 459 | 292 | 9 | 436 | 884 | 301 | 739 | 9.92e-48 | 183 |
| MS.gene35018.t1 | AT3G16940 | 52.206 | 136 | 65 | 0 | 13 | 148 | 23 | 158 | 7.56e-37 | 149 |
Find 264 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACCTGAAATTCCTTTC+TGG | 0.183571 | 4.4:-20846965 | None:intergenic |
| ACCATACAGGTGTTGATTAT+TGG | 0.185292 | 4.4:+20845706 | MS.gene35018:intron |
| CCATGGACTTAACCCTTAAA+AGG | 0.206382 | 4.4:-20847872 | None:intergenic |
| GGAAGGCTGGTTGGTTGGTT+GGG | 0.230610 | 4.4:-20847780 | None:intergenic |
| CTGTATTGGGCCCGAGCTTC+TGG | 0.238171 | 4.4:-20847903 | None:intergenic |
| GTCTCCATGGGTGCAGCTGC+TGG | 0.249458 | 4.4:+20846873 | MS.gene35018:CDS |
| GATTGCGTAAAGCTCCATTT+TGG | 0.250215 | 4.4:-20844946 | None:intergenic |
| TGATGCACAGACTGCTCTTT+TGG | 0.251171 | 4.4:-20845081 | None:intergenic |
| ATTTCCAGAGGCGAAGTTAT+TGG | 0.262144 | 4.4:+20841749 | MS.gene35018:CDS |
| AGGTTGACAGCTTCTCTAAA+TGG | 0.265479 | 4.4:+20845154 | MS.gene35018:CDS |
| AATAGGTCAGGATCAATTTC+TGG | 0.268880 | 4.4:-20845042 | None:intergenic |
| TTGCTGCTCTTGGTTATGAT+TGG | 0.275206 | 4.4:+20846292 | MS.gene35018:CDS |
| TTATGTGAAGATGCTGATTC+AGG | 0.276888 | 4.4:+20843406 | MS.gene35018:CDS |
| GAAGAGGATGATGAGGAGTT+TGG | 0.278551 | 4.4:+20847251 | MS.gene35018:CDS |
| TAACATGCGTTCAAGAAATA+TGG | 0.284948 | 4.4:+20843351 | MS.gene35018:CDS |
| ACCTAATCGAAGAGCCATTT+CGG | 0.289822 | 4.4:-20839565 | None:intergenic |
| ATGACATAGAACTGCCCTTT+TGG | 0.289844 | 4.4:-20843306 | None:intergenic |
| GAATCAGCATAAGCCCATTT+AGG | 0.291998 | 4.4:-20845327 | None:intergenic |
| GATGGCACAAAAGAAACTTT+AGG | 0.301408 | 4.4:+20847047 | MS.gene35018:CDS |
| TTGGTTGGGGACCTTATTAA+TGG | 0.314186 | 4.4:-20847766 | None:intergenic |
| TCCGTCTGTGGACCATTTCC+CGG | 0.320563 | 4.4:-20843676 | None:intergenic |
| ATGCGTGCGGATTTCCAAAA+TGG | 0.320919 | 4.4:+20844932 | MS.gene35018:CDS |
| GATGGCCAGAAAGGAATTTC+AGG | 0.321998 | 4.4:+20846960 | MS.gene35018:CDS |
| TTCCGCTGAACTACTGGGTT+TGG | 0.324534 | 4.4:+20844996 | MS.gene35018:CDS |
| AGCTGATGGTGTGGAGGATT+TGG | 0.325559 | 4.4:+20848094 | MS.gene35018:CDS |
| CACAGTCTCTGCAATCAAAT+TGG | 0.329502 | 4.4:+20844080 | MS.gene35018:CDS |
| ATTTGCTTGTAGTGAAGTTC+AGG | 0.330996 | 4.4:+20845891 | MS.gene35018:CDS |
| CCTAATCGAAGAGCCATTTC+GGG | 0.334256 | 4.4:-20839564 | None:intergenic |
| CAGCTACACGTTGTCACTTC+TGG | 0.337235 | 4.4:-20845748 | None:intergenic |
| TAACCCTTAAAAGGGCCTTT+TGG | 0.340909 | 4.4:-20847863 | None:intergenic |
| ACCCTCCCCATGTCCAGATT+TGG | 0.343404 | 4.4:-20847318 | None:intergenic |
| TAACTATTCCGCTGAACTAC+TGG | 0.345530 | 4.4:+20844990 | MS.gene35018:CDS |
| CTTCACAAAGTAACTGAAAC+TGG | 0.348831 | 4.4:+20846219 | MS.gene35018:CDS |
| AAGACAGACATTGAACTTGA+TGG | 0.351590 | 4.4:-20844040 | None:intergenic |
| GAAGGCTGGTTGGTTGGTTG+GGG | 0.353127 | 4.4:-20847779 | None:intergenic |
| TGCTGCTCTTGGTTATGATT+GGG | 0.363320 | 4.4:+20846293 | MS.gene35018:CDS |
| TCGATCAGATGCCATTAATA+AGG | 0.366625 | 4.4:+20847755 | MS.gene35018:CDS |
| TTACCTGGTGACCTCTTACA+TGG | 0.367157 | 4.4:-20847641 | None:intergenic |
| GGAAAAGAATTGGATGATAC+AGG | 0.367538 | 4.4:-20844019 | None:intergenic |
| TGAACTTGATGGAAAAGAAT+TGG | 0.370030 | 4.4:-20844029 | None:intergenic |
| GTCCTGTATGTTTGGGGAAG+TGG | 0.371591 | 4.4:+20845771 | MS.gene35018:CDS |
| AAAGAAGTTAAAGTGCTTGT+TGG | 0.371798 | 4.4:-20843385 | None:intergenic |
| TTACGCCCTGCAGAGATATT+AGG | 0.372239 | 4.4:+20840833 | MS.gene35018:CDS |
| GCTCAAAATCAAAAGAAAAT+AGG | 0.374943 | 4.4:-20845059 | None:intergenic |
| CATTTAGCAGACGCCTGTAT+TGG | 0.375253 | 4.4:-20847917 | None:intergenic |
| AGTCTTCCCCTGATATTTCA+TGG | 0.377076 | 4.4:+20845214 | MS.gene35018:CDS |
| TCCGCTGAACTACTGGGTTT+GGG | 0.377091 | 4.4:+20844997 | MS.gene35018:CDS |
| TGTAGCTGGTCCTGTATGTT+TGG | 0.377603 | 4.4:+20845763 | MS.gene35018:CDS |
| CCCGAAATGGCTCTTCGATT+AGG | 0.378336 | 4.4:+20839564 | MS.gene35018:CDS |
| CTGGGTTTGGGTAAAGAAAC+TGG | 0.378745 | 4.4:+20845009 | MS.gene35018:CDS |
| TGTCCACTACTTGGATGTTA+AGG | 0.380969 | 4.4:+20842095 | MS.gene35018:CDS |
| TCTGGCTTTCCTGCAAATTA+CGG | 0.383525 | 4.4:+20843328 | MS.gene35018:CDS |
| CCATGTCCAGCATTCCCTTC+AGG | 0.383542 | 4.4:+20846909 | MS.gene35018:CDS |
| CTTTACTAGAAATGTAGATT+TGG | 0.384536 | 4.4:+20845933 | MS.gene35018:CDS |
| CATTTGGTCCGTGGGAATCC+TGG | 0.387080 | 4.4:+20847683 | MS.gene35018:CDS |
| CGCATGTTACCGTAATTTGC+AGG | 0.387863 | 4.4:-20843337 | None:intergenic |
| GTAGCTGGTCCTGTATGTTT+GGG | 0.391436 | 4.4:+20845764 | MS.gene35018:CDS |
| TTCACTACAAGCAAATCTAT+TGG | 0.391533 | 4.4:-20845884 | None:intergenic |
| CTTTCATGAGTTGCATAATC+CGG | 0.391682 | 4.4:+20843657 | MS.gene35018:CDS |
| CTACATTTAGTTGCTGCTCT+TGG | 0.391917 | 4.4:+20846282 | MS.gene35018:CDS |
| ACACCTGCAGATCTTGCTTC+TGG | 0.393291 | 4.4:+20846936 | MS.gene35018:CDS |
| ATGGCACAAAAGAAACTTTA+GGG | 0.395086 | 4.4:+20847048 | MS.gene35018:CDS |
| TCCGTGCCCCATGAAATATC+AGG | 0.400653 | 4.4:-20845222 | None:intergenic |
| GAATTGCAACGCCTGTGCAC+TGG | 0.401573 | 4.4:+20847099 | MS.gene35018:CDS |
| TATCTTTCATAGGCAGGTTA+AGG | 0.405053 | 4.4:+20846176 | MS.gene35018:CDS |
| TCTCTGACCCTCGTTTGAAT+TGG | 0.406378 | 4.4:-20843930 | None:intergenic |
| ATTCCCACGGACCAAATGAT+TGG | 0.406432 | 4.4:-20847678 | None:intergenic |
| ATTTAGCAGACGCCTGTATT+GGG | 0.411016 | 4.4:-20847916 | None:intergenic |
| AATTGCAACGCCTGTGCACT+GGG | 0.412088 | 4.4:+20847100 | MS.gene35018:CDS |
| CGCTCCAGCAGCTGCACCCA+TGG | 0.413239 | 4.4:-20846877 | None:intergenic |
| GTCTTCCCCTGATATTTCAT+GGG | 0.413274 | 4.4:+20845215 | MS.gene35018:CDS |
| TAATCTGAGTTCGATAAATT+CGG | 0.414296 | 4.4:+20848064 | MS.gene35018:CDS |
| AAGAAGTTAAAGTGCTTGTT+GGG | 0.415064 | 4.4:-20843384 | None:intergenic |
| AGAAGTACAAACCAATCATT+TGG | 0.419166 | 4.4:+20847667 | MS.gene35018:CDS |
| GCTTCTAAGTCATCCAAATC+TGG | 0.420233 | 4.4:+20847305 | MS.gene35018:CDS |
| GGTTGCTCTCCTTGTCTCCA+TGG | 0.421375 | 4.4:+20846860 | MS.gene35018:CDS |
| CCTCATGTGTTTGGTAAAGA+TGG | 0.422095 | 4.4:+20846249 | MS.gene35018:CDS |
| TGAAGGCACATATCTTTCAT+AGG | 0.423985 | 4.4:+20846166 | MS.gene35018:CDS |
| TATAGTATTTGTCCACTACT+TGG | 0.426647 | 4.4:+20842086 | MS.gene35018:CDS |
| GGGAAGGCTGGTTGGTTGGT+TGG | 0.428381 | 4.4:-20847781 | None:intergenic |
| ACTGGAGGAGTTACTTACTT+TGG | 0.436854 | 4.4:+20845999 | MS.gene35018:CDS |
| GCCAGATGCTATATGCCTTA+AGG | 0.440387 | 4.4:+20847130 | MS.gene35018:CDS |
| CAGCGGCTTGTGTAGCATTA+CGG | 0.442930 | 4.4:-20847169 | None:intergenic |
| CAGAAGCTCGGGCCCAATAC+AGG | 0.444672 | 4.4:+20847904 | MS.gene35018:CDS |
| GGTAAAGGGCCTCATGTGTT+TGG | 0.444881 | 4.4:+20846240 | MS.gene35018:CDS |
| CAAGCTCCACCTCATGAGAT+TGG | 0.446603 | 4.4:+20845835 | MS.gene35018:CDS |
| GGCACATATCTTTCATAGGC+AGG | 0.447036 | 4.4:+20846170 | MS.gene35018:CDS |
| TAAAGTGCTTGTTGGGCTCA+TGG | 0.450539 | 4.4:-20843377 | None:intergenic |
| AATGTCATGGATAAATCTTC+AGG | 0.452873 | 4.4:+20843977 | MS.gene35018:CDS |
| TAGAAAATACCTTGGTTTGA+CGG | 0.454767 | 4.4:-20847953 | None:intergenic |
| ACCAACCAGCCTTCCCGAAA+AGG | 0.456564 | 4.4:+20847788 | MS.gene35018:CDS |
| CATCCATTGTGAGTGATTCC+AGG | 0.456642 | 4.4:-20847013 | None:intergenic |
| GTTTGTACTTCTTTCTTACC+TGG | 0.458365 | 4.4:-20847656 | None:intergenic |
| CAGGTTAACAAGACCAATGT+AGG | 0.458647 | 4.4:+20843247 | MS.gene35018:intron |
| TCCTTAAGGCATATAGCATC+TGG | 0.459831 | 4.4:-20847131 | None:intergenic |
| AAAGGATAGTAACCTGAAAA+CGG | 0.462345 | 4.4:-20843739 | None:intergenic |
| TTAACTCCAGAAGTTACAAT+TGG | 0.464038 | 4.4:-20846324 | None:intergenic |
| GAAAACGGGTGCATAAGATA+TGG | 0.464608 | 4.4:-20843724 | None:intergenic |
| AAGGGCAGTTCTATGTCATC+TGG | 0.466818 | 4.4:+20843310 | MS.gene35018:CDS |
| AAGTAACTGAAACTGGTAAA+GGG | 0.469551 | 4.4:+20846226 | MS.gene35018:CDS |
| TGATGACAACTTCTTACCTA+TGG | 0.472509 | 4.4:+20848139 | MS.gene35018:CDS |
| GCAGATCTTGCTTCTGGCGA+TGG | 0.474264 | 4.4:+20846942 | MS.gene35018:CDS |
| TTGGAGAAGGTTACGTAGAA+AGG | 0.479331 | 4.4:-20845865 | None:intergenic |
| CCCTGATATTTCATGGGGCA+CGG | 0.479386 | 4.4:+20845221 | MS.gene35018:CDS |
| GCCTCCAATAACTTCGCCTC+TGG | 0.480180 | 4.4:-20841753 | None:intergenic |
| GAGTTGCATAATCCGGGAAA+TGG | 0.480366 | 4.4:+20843664 | MS.gene35018:CDS |
| TACCTGGTGACCTCTTACAT+GGG | 0.482192 | 4.4:-20847640 | None:intergenic |
| AAGGATAGTAACCTGAAAAC+GGG | 0.482248 | 4.4:-20843738 | None:intergenic |
| TGCGAAACACTGAGCTTGCT+TGG | 0.482928 | 4.4:-20843633 | None:intergenic |
| CCATTAGCTAAAATCGTAGC+TGG | 0.483148 | 4.4:-20845799 | None:intergenic |
| GGAGCGTTCTTCTCCCGAAA+TGG | 0.484215 | 4.4:+20839551 | MS.gene35018:CDS |
| GTTCTTCCTGAAGGGAATGC+TGG | 0.486036 | 4.4:-20846915 | None:intergenic |
| ATAGCACCAATTGTAACTTC+TGG | 0.488450 | 4.4:+20846318 | MS.gene35018:CDS |
| CCTGAAGGGAATGCTGGACA+TGG | 0.490271 | 4.4:-20846909 | None:intergenic |
| TATTTGTACTGCAGCAGCAT+TGG | 0.491242 | 4.4:-20847345 | None:intergenic |
| ATGGATGGACGGCTCTACAC+TGG | 0.493508 | 4.4:+20846367 | MS.gene35018:CDS |
| AGAATTCCTAATATCTCTGC+AGG | 0.493849 | 4.4:-20840839 | None:intergenic |
| TCAAAGAGTTGTCAAAATCC+AGG | 0.494158 | 4.4:+20847418 | MS.gene35018:CDS |
| CAGCATCAAGAGAATCCTTA+AGG | 0.496736 | 4.4:-20847145 | None:intergenic |
| GAGCACTCAACATAGGGTCC+TGG | 0.496971 | 4.4:+20843951 | MS.gene35018:CDS |
| TCGAGTAATGAAGAGCCAAC+TGG | 0.497413 | 4.4:+20846117 | MS.gene35018:CDS |
| TTGAGGCACTTTAGAAGGGA+TGG | 0.497421 | 4.4:+20841441 | MS.gene35018:CDS |
| CGGTGGAGGCGTAAGGGCAG+TGG | 0.498062 | 4.4:+20847720 | MS.gene35018:CDS |
| GGATGATACAGGGGAAGGTT+CGG | 0.500961 | 4.4:-20844008 | None:intergenic |
| TTTCGGGAAGGCTGGTTGGT+TGG | 0.502036 | 4.4:-20847785 | None:intergenic |
| AATGCGACATCATTTGCAAC+TGG | 0.503844 | 4.4:+20845981 | MS.gene35018:CDS |
| TATATTACGGTGGAGGCGTA+AGG | 0.504437 | 4.4:+20847713 | MS.gene35018:CDS |
| TTATGCTGATTCAGAAATTG+AGG | 0.506793 | 4.4:+20845338 | MS.gene35018:CDS |
| GAAATATCCATCTCTCCAGT+TGG | 0.507509 | 4.4:-20846132 | None:intergenic |
| AGAAGTTACAATTGGTGCTA+TGG | 0.508586 | 4.4:-20846316 | None:intergenic |
| TGTGATAGATGATACCTCAT+TGG | 0.509091 | 4.4:+20845257 | MS.gene35018:CDS |
| TTTATCCATGACATTGTCCC+AGG | 0.509557 | 4.4:-20843969 | None:intergenic |
| GTCTCTGCAATCAAATTGGC+AGG | 0.510338 | 4.4:+20844084 | MS.gene35018:CDS |
| TCCTGGAGAAGGTTATATTA+CGG | 0.511577 | 4.4:+20847700 | MS.gene35018:CDS |
| GTTGCTCTCCTTGTCTCCAT+GGG | 0.517325 | 4.4:+20846861 | MS.gene35018:CDS |
| CTACACTGGGCTGCATCATG+TGG | 0.518678 | 4.4:+20846381 | MS.gene35018:CDS |
| ATGTTAAAGGCCCATGTAAG+AGG | 0.521276 | 4.4:+20847630 | MS.gene35018:intron |
| CATGGACTTAACCCTTAAAA+GGG | 0.522222 | 4.4:-20847871 | None:intergenic |
| TTCCACTTCCCCAAACATAC+AGG | 0.522582 | 4.4:-20845773 | None:intergenic |
| TAGAAACCATACTCGGTGGC+CGG | 0.524497 | 4.4:-20840904 | None:intergenic |
| CAGAAGTGACAACGTGTAGC+TGG | 0.528053 | 4.4:+20845749 | MS.gene35018:CDS |
| CTCCACCTCATGAGATTGGA+CGG | 0.528271 | 4.4:+20845839 | MS.gene35018:CDS |
| AAAGTAACTGAAACTGGTAA+AGG | 0.528379 | 4.4:+20846225 | MS.gene35018:CDS |
| CAGGAATTTGAGTACAAAGA+GGG | 0.529312 | 4.4:+20845910 | MS.gene35018:CDS |
| TTAGAAGGGATGGATACAAC+TGG | 0.529528 | 4.4:+20841451 | MS.gene35018:CDS |
| AAATCAAAAGAAAATAGGTC+AGG | 0.530279 | 4.4:-20845054 | None:intergenic |
| TTTCATGAGTTGCATAATCC+GGG | 0.531246 | 4.4:+20843658 | MS.gene35018:CDS |
| AGGCATAAGTACAGATACTA+AGG | 0.532801 | 4.4:+20843267 | MS.gene35018:CDS |
| TTGCAACGCCTGTGCACTGG+GGG | 0.533191 | 4.4:+20847102 | MS.gene35018:CDS |
| TGAAGAGCCAACTGGAGAGA+TGG | 0.533599 | 4.4:+20846125 | MS.gene35018:CDS |
| ATCAACTTCCGTGATGTGAA+TGG | 0.534863 | 4.4:+20846348 | MS.gene35018:CDS |
| CTCATGTGTTTGGTAAAGAT+GGG | 0.535877 | 4.4:+20846250 | MS.gene35018:CDS |
| TCGCCAGAAGCAAGATCTGC+AGG | 0.537099 | 4.4:-20846939 | None:intergenic |
| TCTGTCTTCAACGAAGGAAG+TGG | 0.537368 | 4.4:+20844055 | MS.gene35018:CDS |
| ACTGGGCTGCATCATGTGGC+AGG | 0.538074 | 4.4:+20846385 | MS.gene35018:CDS |
| ACCATACTCGGTGGCCGGGT+AGG | 0.538324 | 4.4:-20840899 | None:intergenic |
| TCCAGAGGCGAAGTTATTGG+AGG | 0.539110 | 4.4:+20841752 | MS.gene35018:CDS |
| GCTTCTGGCGATGGCCAGAA+AGG | 0.539832 | 4.4:+20846951 | MS.gene35018:CDS |
| TTACCTCCCACTTGTTCAGT+GGG | 0.542639 | 4.4:+20843901 | MS.gene35018:CDS |
| GGTCAGAGAGCACTCAACAT+AGG | 0.543054 | 4.4:+20843944 | MS.gene35018:CDS |
| AGAAACCATACTCGGTGGCC+GGG | 0.543565 | 4.4:-20840903 | None:intergenic |
| TGGTTCAGTATCCAGAAGCT+CGG | 0.545136 | 4.4:+20847892 | MS.gene35018:CDS |
| GTCAGAGAGCACTCAACATA+GGG | 0.545853 | 4.4:+20843945 | MS.gene35018:CDS |
| GGTTACATCAGATTCCCAAA+AGG | 0.546119 | 4.4:+20843291 | MS.gene35018:CDS |
| GGTTCAGTATCCAGAAGCTC+GGG | 0.547885 | 4.4:+20847893 | MS.gene35018:CDS |
| TATTTCAAAACACAGGTTGA+AGG | 0.548307 | 4.4:+20846149 | MS.gene35018:CDS |
| ACCGTAATATAACCTTCTCC+AGG | 0.551191 | 4.4:-20847701 | None:intergenic |
| ATCCAAATCTGGACATGGGG+AGG | 0.552979 | 4.4:+20847316 | MS.gene35018:CDS |
| TCAGTATGAAGAGGATGATG+AGG | 0.553757 | 4.4:+20847244 | MS.gene35018:CDS |
| AGTCATGTATGCTAAACAGC+TGG | 0.554108 | 4.4:-20845299 | None:intergenic |
| GGAAGCTCATGAGAAGTTGA+AGG | 0.554386 | 4.4:+20841503 | MS.gene35018:CDS |
| GCTGGTCTTGAGATAGAGAC+AGG | 0.556085 | 4.4:-20845281 | None:intergenic |
| CGGATTATGCAACTCATGAA+AGG | 0.556996 | 4.4:-20843656 | None:intergenic |
| AGTTTGAAGCACAGCATCGA+TGG | 0.557059 | 4.4:+20840810 | MS.gene35018:CDS |
| TCTGCAGGTGTTCTTCCTGA+AGG | 0.557364 | 4.4:-20846924 | None:intergenic |
| GAGTGAACAAAAGTTCCAAA+AGG | 0.557664 | 4.4:+20847848 | MS.gene35018:CDS |
| GGCCCATGTAAGAGGTCACC+AGG | 0.559386 | 4.4:+20847638 | MS.gene35018:intron |
| ATTACCTCCCACTTGTTCAG+TGG | 0.560370 | 4.4:+20843900 | MS.gene35018:CDS |
| GATTTACCCCACTGAACAAG+TGG | 0.561100 | 4.4:-20843908 | None:intergenic |
| AACTATTCCGCTGAACTACT+GGG | 0.561115 | 4.4:+20844991 | MS.gene35018:CDS |
| GTTACATCAGATTCCCAAAA+GGG | 0.561877 | 4.4:+20843292 | MS.gene35018:CDS |
| GAGTTCGATAAATTCGGAAG+AGG | 0.562641 | 4.4:+20848070 | MS.gene35018:CDS |
| TCTCAAAAGAACCGCCTACC+CGG | 0.563454 | 4.4:+20840885 | MS.gene35018:CDS |
| AGCACTCAACATAGGGTCCT+GGG | 0.567035 | 4.4:+20843952 | MS.gene35018:CDS |
| GATTAAAGAATTTGCATCAG+TGG | 0.567503 | 4.4:+20845176 | MS.gene35018:CDS |
| CCGTGCCCCATGAAATATCA+GGG | 0.568861 | 4.4:-20845221 | None:intergenic |
| ATGGATGATGTGAATAAAGA+TGG | 0.571903 | 4.4:+20847029 | MS.gene35018:CDS |
| ATACTCGGTGGCCGGGTAGG+CGG | 0.571941 | 4.4:-20840896 | None:intergenic |
| TCAATGTCTGTCTTCAACGA+AGG | 0.572676 | 4.4:+20844049 | MS.gene35018:CDS |
| GTCATTATTAACTAGCCACC+TGG | 0.573370 | 4.4:+20846995 | MS.gene35018:CDS |
| CAGCTGCACCCATGGAGACA+AGG | 0.573677 | 4.4:-20846869 | None:intergenic |
| CTTTACGCAATCGTTAAGCA+TGG | 0.575446 | 4.4:+20844957 | MS.gene35018:CDS |
| CGTAAGGGCAGTGGTTTACG+TGG | 0.575467 | 4.4:+20847729 | MS.gene35018:CDS |
| TTAAGGAGAAGCTGTACTCA+TGG | 0.575527 | 4.4:+20846193 | MS.gene35018:CDS |
| CTGCAGGTGTTCTTCCTGAA+GGG | 0.576107 | 4.4:-20846923 | None:intergenic |
| TCCAAATCTGGACATGGGGA+GGG | 0.579121 | 4.4:+20847317 | MS.gene35018:CDS |
| TGGATGGACGGCTCTACACT+GGG | 0.581082 | 4.4:+20846368 | MS.gene35018:CDS |
| TACTTGATGTATTCTATCAG+CGG | 0.582154 | 4.4:-20847186 | None:intergenic |
| ACCCGTCCAATCTCATGAGG+TGG | 0.583328 | 4.4:-20845841 | None:intergenic |
| AAGTCATCCAAATCTGGACA+TGG | 0.586904 | 4.4:+20847311 | MS.gene35018:CDS |
| GTCCGTGGGAATCCTGGAGA+AGG | 0.588343 | 4.4:+20847689 | MS.gene35018:CDS |
| AGGGTCCTGGGACAATGTCA+TGG | 0.588470 | 4.4:+20843964 | MS.gene35018:CDS |
| ACAAGCAAATCTATTGGAGA+AGG | 0.590474 | 4.4:-20845878 | None:intergenic |
| AAGGATCAATCGAATGCCAT+AGG | 0.590654 | 4.4:-20848155 | None:intergenic |
| AAACCAATCATTTGGTCCGT+GGG | 0.591404 | 4.4:+20847675 | MS.gene35018:CDS |
| GAAAAGAATTGGATGATACA+GGG | 0.592068 | 4.4:-20844018 | None:intergenic |
| ATCTGTACTTATGCCTACAT+TGG | 0.592564 | 4.4:-20843260 | None:intergenic |
| TCCGGGAAATGGTCCACAGA+CGG | 0.593297 | 4.4:+20843675 | MS.gene35018:CDS |
| GCAGCTAGCTCAGTATGAAG+AGG | 0.595976 | 4.4:+20847235 | MS.gene35018:CDS |
| ATCTTTCAAACATAGGTGGA+AGG | 0.598899 | 4.4:+20841679 | MS.gene35018:intron |
| CAGGCGTCTGCTAAATGTAG+TGG | 0.601069 | 4.4:+20847923 | MS.gene35018:CDS |
| TCTTCCCCTGATATTTCATG+GGG | 0.604539 | 4.4:+20845216 | MS.gene35018:CDS |
| TTACCTTAACATCCAAGTAG+TGG | 0.606730 | 4.4:-20842098 | None:intergenic |
| CAAACCAATCATTTGGTCCG+TGG | 0.607032 | 4.4:+20847674 | MS.gene35018:CDS |
| TCCACCTCATGAGATTGGAC+GGG | 0.608713 | 4.4:+20845840 | MS.gene35018:CDS |
| AGAAGGTTATATTACGGTGG+AGG | 0.609021 | 4.4:+20847706 | MS.gene35018:CDS |
| ATACACTGCTACTACGCCCA+TGG | 0.609101 | 4.4:+20841712 | MS.gene35018:CDS |
| AACCAGCCTTCCCGAAAAGG+AGG | 0.610047 | 4.4:+20847791 | MS.gene35018:CDS |
| ATATTACGGTGGAGGCGTAA+GGG | 0.610245 | 4.4:+20847714 | MS.gene35018:CDS |
| AATTCGGAAGAGGCAGCTGA+TGG | 0.613503 | 4.4:+20848080 | MS.gene35018:CDS |
| TCAGGAATTTGAGTACAAAG+AGG | 0.616104 | 4.4:+20845909 | MS.gene35018:CDS |
| AGTCATCCAAATCTGGACAT+GGG | 0.619839 | 4.4:+20847312 | MS.gene35018:CDS |
| GTCATCCAAATCTGGACATG+GGG | 0.620280 | 4.4:+20847313 | MS.gene35018:CDS |
| TTATATGCTCAGAGAGAGAA+CGG | 0.620970 | 4.4:+20846839 | MS.gene35018:intron |
| AGATGGATATTTCAAAACAC+AGG | 0.621087 | 4.4:+20846142 | MS.gene35018:CDS |
| ACTTCCGTGATGTGAATGGA+TGG | 0.622379 | 4.4:+20846352 | MS.gene35018:CDS |
| CCGTCCATCCATTCACATCA+CGG | 0.622728 | 4.4:-20846356 | None:intergenic |
| GGAAGAGGCAGCTGATGGTG+TGG | 0.625414 | 4.4:+20848085 | MS.gene35018:CDS |
| TCATGGGGCACGGATGAATG+TGG | 0.628341 | 4.4:+20845231 | MS.gene35018:CDS |
| ACCCAAACCCAGTAGTTCAG+CGG | 0.628373 | 4.4:-20844998 | None:intergenic |
| AACTGGCGAAAGAAGAACGA+TGG | 0.634955 | 4.4:+20841468 | MS.gene35018:CDS |
| CCGTGATGTGAATGGATGGA+CGG | 0.639667 | 4.4:+20846356 | MS.gene35018:CDS |
| AACCTTCTCCAGGATTCCCA+CGG | 0.641059 | 4.4:-20847691 | None:intergenic |
| GAATTGGATGATACAGGGGA+AGG | 0.641814 | 4.4:-20844013 | None:intergenic |
| GCATCAATCTTATCCGTCTG+TGG | 0.641952 | 4.4:-20843688 | None:intergenic |
| GCGACATCATTTGCAACTGG+AGG | 0.643033 | 4.4:+20845984 | MS.gene35018:CDS |
| AGAGGCAGCTGATGGTGTGG+AGG | 0.643223 | 4.4:+20848088 | MS.gene35018:CDS |
| CCACCTGGAATCACTCACAA+TGG | 0.644430 | 4.4:+20847010 | MS.gene35018:CDS |
| AAAAGAATTGGATGATACAG+GGG | 0.645982 | 4.4:-20844017 | None:intergenic |
| CCATTTGAAGAAAATGCGTG+CGG | 0.648404 | 4.4:+20844919 | MS.gene35018:CDS |
| GTGGCTAGTTAATAATGACT+CGG | 0.659900 | 4.4:-20846991 | None:intergenic |
| GGAACCCGTCCAATCTCATG+AGG | 0.671886 | 4.4:-20845844 | None:intergenic |
| AGAAGCTGTCAACCTTCGTG+AGG | 0.672119 | 4.4:-20845146 | None:intergenic |
| CATAAGTACAGATACTAAGG+AGG | 0.672927 | 4.4:+20843270 | MS.gene35018:CDS |
| AAGATAATGAAAATTTCCAG+AGG | 0.673367 | 4.4:+20841737 | MS.gene35018:CDS |
| GGGTAAATCCAATTCAAACG+AGG | 0.675725 | 4.4:+20843922 | MS.gene35018:CDS |
| CCATCTTTACCAAACACATG+AGG | 0.676075 | 4.4:-20846249 | None:intergenic |
| GGTAAATCCAATTCAAACGA+GGG | 0.679092 | 4.4:+20843923 | MS.gene35018:CDS |
| AGATAGAGACAGGTCCAATG+AGG | 0.681492 | 4.4:-20845271 | None:intergenic |
| ATTGCAACGCCTGTGCACTG+GGG | 0.681592 | 4.4:+20847101 | MS.gene35018:CDS |
| TGGAGAAGGTTATATTACGG+TGG | 0.685543 | 4.4:+20847703 | MS.gene35018:CDS |
| GAATTCCTAATATCTCTGCA+GGG | 0.686153 | 4.4:-20840838 | None:intergenic |
| AGCTTCTGGATACTGAACCA+TGG | 0.689349 | 4.4:-20847889 | None:intergenic |
| TGCTAAAGAGAGCCTCACGA+AGG | 0.690094 | 4.4:+20845134 | MS.gene35018:CDS |
| TAGCTGGTCCTGTATGTTTG+GGG | 0.692929 | 4.4:+20845765 | MS.gene35018:CDS |
| ATTTACCCCACTGAACAAGT+GGG | 0.693252 | 4.4:-20843907 | None:intergenic |
| TACCTCCCACTTGTTCAGTG+GGG | 0.703440 | 4.4:+20843902 | MS.gene35018:CDS |
| TACCCCACTGAACAAGTGGG+AGG | 0.704031 | 4.4:-20843904 | None:intergenic |
| GGACGATTACCGTCAAACCA+AGG | 0.706351 | 4.4:+20847944 | MS.gene35018:CDS |
| CGTGCCCCATGAAATATCAG+GGG | 0.706527 | 4.4:-20845220 | None:intergenic |
| GTGTTTGGTAAAGATGGGCA+AGG | 0.707666 | 4.4:+20846255 | MS.gene35018:CDS |
| TGTGCATCACAACTTGCACA+CGG | 0.708380 | 4.4:+20845095 | MS.gene35018:CDS |
| TGCAACGCCTGTGCACTGGG+GGG | 0.729574 | 4.4:+20847103 | MS.gene35018:CDS |
| CCATTGTGAGTGATTCCAGG+TGG | 0.730255 | 4.4:-20847010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 20839546 | 20848172 | 20839546 | ID=MS.gene35018 |
| chr4.4 | mRNA | 20839546 | 20848172 | 20839546 | ID=MS.gene35018.t1;Parent=MS.gene35018 |
| chr4.4 | exon | 20839546 | 20839585 | 20839546 | ID=MS.gene35018.t1.exon1;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20839546 | 20839585 | 20839546 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20840795 | 20840914 | 20840795 | ID=MS.gene35018.t1.exon2;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20840795 | 20840914 | 20840795 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20841409 | 20841524 | 20841409 | ID=MS.gene35018.t1.exon3;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20841409 | 20841524 | 20841409 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20841694 | 20841782 | 20841694 | ID=MS.gene35018.t1.exon4;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20841694 | 20841782 | 20841694 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20842074 | 20842116 | 20842074 | ID=MS.gene35018.t1.exon5;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20842074 | 20842116 | 20842074 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20843250 | 20843427 | 20843250 | ID=MS.gene35018.t1.exon6;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20843250 | 20843427 | 20843250 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20843623 | 20843748 | 20843623 | ID=MS.gene35018.t1.exon7;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20843623 | 20843748 | 20843623 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20843894 | 20844105 | 20843894 | ID=MS.gene35018.t1.exon8;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20843894 | 20844105 | 20843894 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20844916 | 20845359 | 20844916 | ID=MS.gene35018.t1.exon9;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20844916 | 20845359 | 20844916 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20845715 | 20846406 | 20845715 | ID=MS.gene35018.t1.exon10;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20845715 | 20846406 | 20845715 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20846851 | 20847439 | 20846851 | ID=MS.gene35018.t1.exon11;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20846851 | 20847439 | 20846851 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20847639 | 20847965 | 20847639 | ID=MS.gene35018.t1.exon12;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20847639 | 20847965 | 20847639 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| chr4.4 | exon | 20848059 | 20848172 | 20848059 | ID=MS.gene35018.t1.exon13;Parent=MS.gene35018.t1 |
| chr4.4 | CDS | 20848059 | 20848172 | 20848059 | ID=cds.MS.gene35018.t1;Parent=MS.gene35018.t1 |
| Gene Sequence |
| Protein sequence |
