Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90181.t1 | XP_013457187.1 | 96.8 | 1029 | 33 | 0 | 1 | 1029 | 1 | 1029 | 0.00E+00 | 1957.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90181.t1 | Q6NPP4 | 47.2 | 1084 | 483 | 20 | 1 | 1029 | 1 | 1050 | 6.1e-239 | 828.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90181.t1 | A0A072UQ84 | 96.8 | 1029 | 33 | 0 | 1 | 1029 | 1 | 1029 | 0.0e+00 | 1957.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene90181.t1 | TF | CAMTA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050961 | MS.gene90181 | 0.805626 | 1.22E-49 | -1.69E-46 |
MS.gene057711 | MS.gene90181 | 0.800286 | 1.55E-48 | -1.69E-46 |
MS.gene058404 | MS.gene90181 | 0.821294 | 4.36E-53 | -1.69E-46 |
MS.gene059675 | MS.gene90181 | 0.800764 | 1.24E-48 | -1.69E-46 |
MS.gene060522 | MS.gene90181 | 0.833651 | 4.72E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene90181 | MS.gene028443 | PPI |
MS.gene90181 | MS.gene002202 | PPI |
MS.gene90181 | MS.gene061784 | PPI |
MS.gene90181 | MS.gene030815 | PPI |
MS.gene90181 | MS.gene57296 | PPI |
MS.gene90181 | MS.gene01170 | PPI |
MS.gene90181 | MS.gene35018 | PPI |
MS.gene90181 | MS.gene047423 | PPI |
MS.gene90181 | MS.gene28071 | PPI |
MS.gene90181 | MS.gene70367 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90181.t1 | MTR_4g094215 | 97.765 | 1029 | 23 | 0 | 1 | 1029 | 1 | 1029 | 0.0 | 2098 |
MS.gene90181.t1 | MTR_4g094215 | 97.670 | 1030 | 23 | 1 | 1 | 1029 | 1 | 1030 | 0.0 | 2093 |
MS.gene90181.t1 | MTR_4g094215 | 97.740 | 885 | 20 | 0 | 1 | 885 | 1 | 885 | 0.0 | 1802 |
MS.gene90181.t1 | MTR_2g008840 | 62.407 | 1080 | 315 | 12 | 1 | 1029 | 1 | 1040 | 0.0 | 1301 |
MS.gene90181.t1 | MTR_2g008840 | 62.308 | 1040 | 301 | 12 | 41 | 1029 | 1 | 1000 | 0.0 | 1251 |
MS.gene90181.t1 | MTR_2g008840 | 60.684 | 936 | 279 | 10 | 1 | 885 | 1 | 898 | 0.0 | 1081 |
MS.gene90181.t1 | MTR_8g090205 | 40.214 | 1124 | 516 | 28 | 12 | 1027 | 8 | 1083 | 0.0 | 698 |
MS.gene90181.t1 | MTR_8g090205 | 40.195 | 1127 | 518 | 28 | 9 | 1027 | 7 | 1085 | 0.0 | 698 |
MS.gene90181.t1 | MTR_8g090205 | 40.348 | 1093 | 498 | 26 | 9 | 994 | 7 | 1052 | 0.0 | 685 |
MS.gene90181.t1 | MTR_8g090205 | 40.367 | 1090 | 496 | 26 | 12 | 994 | 8 | 1050 | 0.0 | 685 |
MS.gene90181.t1 | MTR_8g090205 | 50.893 | 672 | 282 | 13 | 382 | 1027 | 277 | 926 | 0.0 | 627 |
MS.gene90181.t1 | MTR_8g090205 | 51.724 | 638 | 262 | 11 | 382 | 994 | 277 | 893 | 0.0 | 614 |
MS.gene90181.t1 | MTR_8g090205 | 37.462 | 985 | 462 | 26 | 9 | 886 | 7 | 944 | 9.92e-175 | 535 |
MS.gene90181.t1 | MTR_8g080800 | 38.486 | 621 | 310 | 17 | 426 | 1023 | 389 | 960 | 9.68e-119 | 388 |
MS.gene90181.t1 | MTR_8g080800 | 50.641 | 156 | 70 | 1 | 14 | 169 | 8 | 156 | 1.13e-42 | 169 |
MS.gene90181.t1 | MTR_3g085050 | 39.261 | 568 | 305 | 13 | 426 | 984 | 375 | 911 | 8.90e-100 | 335 |
MS.gene90181.t1 | MTR_3g085050 | 47.445 | 137 | 72 | 0 | 10 | 146 | 4 | 140 | 7.63e-37 | 150 |
MS.gene90181.t1 | MTR_3g085050 | 39.261 | 568 | 305 | 13 | 426 | 984 | 375 | 911 | 3.00e-99 | 335 |
MS.gene90181.t1 | MTR_3g085050 | 47.445 | 137 | 72 | 0 | 10 | 146 | 4 | 140 | 9.42e-37 | 150 |
MS.gene90181.t1 | MTR_2g034650 | 32.432 | 629 | 350 | 18 | 384 | 981 | 301 | 885 | 1.57e-79 | 279 |
MS.gene90181.t1 | MTR_2g034650 | 55.645 | 124 | 55 | 0 | 13 | 136 | 24 | 147 | 3.17e-37 | 152 |
MS.gene90181.t1 | MTR_4g121840 | 32.039 | 618 | 366 | 15 | 384 | 981 | 284 | 867 | 2.48e-77 | 273 |
MS.gene90181.t1 | MTR_4g121840 | 60.241 | 83 | 33 | 0 | 54 | 136 | 36 | 118 | 1.23e-19 | 95.5 |
MS.gene90181.t1 | MTR_4g121840 | 32.039 | 618 | 366 | 15 | 384 | 981 | 314 | 897 | 2.76e-77 | 273 |
MS.gene90181.t1 | MTR_4g121840 | 54.839 | 124 | 56 | 0 | 13 | 136 | 25 | 148 | 2.10e-30 | 130 |
MS.gene90181.t1 | MTR_8g090200 | 27.232 | 448 | 257 | 13 | 115 | 537 | 10 | 413 | 3.96e-35 | 139 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90181.t1 | AT5G64220 | 50.188 | 1064 | 441 | 20 | 1 | 1010 | 1 | 1029 | 0.0 | 976 |
MS.gene90181.t1 | AT5G64220 | 50.188 | 1064 | 441 | 20 | 1 | 1010 | 1 | 1029 | 0.0 | 976 |
MS.gene90181.t1 | AT5G09410 | 51.243 | 1046 | 421 | 26 | 11 | 1024 | 14 | 1002 | 0.0 | 965 |
MS.gene90181.t1 | AT5G09410 | 50.382 | 1046 | 412 | 26 | 11 | 1024 | 14 | 984 | 0.0 | 943 |
MS.gene90181.t1 | AT5G09410 | 49.248 | 1064 | 415 | 27 | 11 | 1024 | 73 | 1061 | 0.0 | 911 |
MS.gene90181.t1 | AT5G09410 | 48.986 | 937 | 389 | 26 | 120 | 1024 | 2 | 881 | 0.0 | 795 |
MS.gene90181.t1 | AT2G22300 | 42.553 | 1034 | 485 | 21 | 13 | 993 | 13 | 990 | 0.0 | 743 |
MS.gene90181.t1 | AT2G22300 | 42.553 | 1034 | 485 | 21 | 13 | 993 | 13 | 990 | 0.0 | 743 |
MS.gene90181.t1 | AT2G22300 | 41.498 | 988 | 469 | 21 | 59 | 993 | 1 | 932 | 0.0 | 680 |
MS.gene90181.t1 | AT1G67310 | 38.111 | 614 | 338 | 13 | 420 | 1015 | 419 | 1008 | 3.67e-101 | 342 |
MS.gene90181.t1 | AT1G67310 | 48.000 | 125 | 65 | 0 | 11 | 135 | 34 | 158 | 2.44e-35 | 146 |
MS.gene90181.t1 | AT3G16940 | 31.475 | 556 | 343 | 10 | 436 | 981 | 274 | 801 | 2.32e-73 | 260 |
MS.gene90181.t1 | AT3G16940 | 53.906 | 128 | 59 | 0 | 21 | 148 | 4 | 131 | 7.13e-36 | 147 |
MS.gene90181.t1 | AT3G16940 | 31.475 | 556 | 343 | 10 | 436 | 981 | 301 | 828 | 5.77e-73 | 259 |
MS.gene90181.t1 | AT3G16940 | 52.206 | 136 | 65 | 0 | 13 | 148 | 23 | 158 | 1.31e-36 | 149 |
MS.gene90181.t1 | AT3G16940 | 29.847 | 459 | 292 | 9 | 436 | 884 | 301 | 739 | 7.14e-48 | 184 |
MS.gene90181.t1 | AT3G16940 | 52.206 | 136 | 65 | 0 | 13 | 148 | 23 | 158 | 6.73e-37 | 150 |
Find 266 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACCTGAAATTCCTTTC+TGG | 0.183571 | 4.2:-19354695 | None:intergenic |
ACCATACAGGTGTTGATTAT+TGG | 0.185292 | 4.2:+19353435 | MS.gene90181:intron |
CCATGGACTTAACCCTTAAA+AGG | 0.206382 | 4.2:-19355602 | None:intergenic |
GGAAGGCTGGTTGGTTGGTT+GGG | 0.230610 | 4.2:-19355510 | None:intergenic |
CTGTATTGGGCCCGAGCTTC+TGG | 0.238171 | 4.2:-19355633 | None:intergenic |
GTCTCCATGGGTGCAGCTGC+TGG | 0.249458 | 4.2:+19354603 | MS.gene90181:CDS |
TGATGCACAGACTGCTCTTT+TGG | 0.251171 | 4.2:-19352810 | None:intergenic |
ATTTCCAGAGGCGAAGTTAT+TGG | 0.262144 | 4.2:+19348981 | MS.gene90181:CDS |
AGGTTGACAGCTTCTCTAAA+TGG | 0.265479 | 4.2:+19352883 | MS.gene90181:CDS |
AATAGGTCAGGATCAATTTC+TGG | 0.268880 | 4.2:-19352771 | None:intergenic |
TTGCTGCTCTTGGTTATGAT+TGG | 0.275206 | 4.2:+19354021 | MS.gene90181:CDS |
TTATGTGAAGATGCTGATTC+AGG | 0.276888 | 4.2:+19350644 | MS.gene90181:CDS |
GAAGAGGATGATGAGGAGTT+TGG | 0.278551 | 4.2:+19354981 | MS.gene90181:CDS |
GACTGAGTAAAGCTCCATTT+TGG | 0.278754 | 4.2:-19352675 | None:intergenic |
TAACATGCGTTCAAGAAATA+TGG | 0.284948 | 4.2:+19350589 | MS.gene90181:CDS |
ACCTAATCGAAGAGCCATTT+CGG | 0.289822 | 4.2:-19346796 | None:intergenic |
ATGACATAGAACTGCCCTTT+TGG | 0.289844 | 4.2:-19350544 | None:intergenic |
GAATCAGCATAAGCCCATTT+AGG | 0.291998 | 4.2:-19353056 | None:intergenic |
GATGGCACAAAAGAAACTTT+AGG | 0.301408 | 4.2:+19354777 | MS.gene90181:CDS |
TTGGTTGGGGACCTTATTAA+TGG | 0.314186 | 4.2:-19355496 | None:intergenic |
ATGCGGGCGGATTTCCAAAA+TGG | 0.320508 | 4.2:+19352661 | MS.gene90181:CDS |
TCCGTCTGTGGACCATTTCC+CGG | 0.320563 | 4.2:-19351404 | None:intergenic |
GATGGCCAGAAAGGAATTTC+AGG | 0.321998 | 4.2:+19354690 | MS.gene90181:CDS |
TTCCGCTGAACTACTGGGTT+TGG | 0.324534 | 4.2:+19352725 | MS.gene90181:CDS |
CACAGTCTCTGCAATCAAAT+TGG | 0.329502 | 4.2:+19351808 | MS.gene90181:CDS |
ATTTGCTTGTAGTGAAGTTC+AGG | 0.330996 | 4.2:+19353620 | MS.gene90181:CDS |
CCTAATCGAAGAGCCATTTC+GGG | 0.334256 | 4.2:-19346795 | None:intergenic |
CAGCTACACGTTGTCACTTC+TGG | 0.337235 | 4.2:-19353477 | None:intergenic |
TAACCCTTAAAAGGGCCTTT+TGG | 0.340909 | 4.2:-19355593 | None:intergenic |
ACCCTCCCCATGTCCAGATT+TGG | 0.343404 | 4.2:-19355048 | None:intergenic |
TAACTATTCCGCTGAACTAC+TGG | 0.345530 | 4.2:+19352719 | MS.gene90181:CDS |
CTTCACAAAGTAACTGAAAC+TGG | 0.348831 | 4.2:+19353948 | MS.gene90181:CDS |
AAGACAGACATTGAACTTGA+TGG | 0.351590 | 4.2:-19351768 | None:intergenic |
GAAGGCTGGTTGGTTGGTTG+GGG | 0.353127 | 4.2:-19355509 | None:intergenic |
TGCTGCTCTTGGTTATGATT+GGG | 0.363320 | 4.2:+19354022 | MS.gene90181:CDS |
TCGATCAGATGCCATTAATA+AGG | 0.366625 | 4.2:+19355485 | MS.gene90181:CDS |
TTACCTGGTGACCTCTTACA+TGG | 0.367157 | 4.2:-19355371 | None:intergenic |
AGCTGACGGTGTGGAGGATT+TGG | 0.367485 | 4.2:+19355824 | MS.gene90181:CDS |
GGAAAAGAATTGGATGATAC+AGG | 0.367538 | 4.2:-19351747 | None:intergenic |
TGAACTTGATGGAAAAGAAT+TGG | 0.370030 | 4.2:-19351757 | None:intergenic |
GTCCTGTATGTTTGGGGAAG+TGG | 0.371591 | 4.2:+19353500 | MS.gene90181:CDS |
AAAGAAGTTAAAGTGCTTGT+TGG | 0.371798 | 4.2:-19350623 | None:intergenic |
TTACGCCCTGCAGAGATATT+AGG | 0.372239 | 4.2:+19348065 | MS.gene90181:CDS |
GCTCAAAATCAAAAGAAAAT+AGG | 0.374943 | 4.2:-19352788 | None:intergenic |
CATTTAGCAGACGCCTGTAT+TGG | 0.375253 | 4.2:-19355647 | None:intergenic |
AGTCTTCCCCTGATATTTCA+TGG | 0.377076 | 4.2:+19352943 | MS.gene90181:CDS |
TCCGCTGAACTACTGGGTTT+GGG | 0.377091 | 4.2:+19352726 | MS.gene90181:CDS |
TGTAGCTGGTCCTGTATGTT+TGG | 0.377603 | 4.2:+19353492 | MS.gene90181:CDS |
CCCGAAATGGCTCTTCGATT+AGG | 0.378336 | 4.2:+19346795 | MS.gene90181:CDS |
CTGGGTTTGGGTAAAGAAAC+TGG | 0.378745 | 4.2:+19352738 | MS.gene90181:CDS |
TGTCCACTACTTGGATGTTA+AGG | 0.380969 | 4.2:+19349327 | MS.gene90181:CDS |
TCTGGCTTTCCTGCAAATTA+CGG | 0.383525 | 4.2:+19350566 | MS.gene90181:CDS |
CCATGTCCAGCATTCCCTTC+AGG | 0.383542 | 4.2:+19354639 | MS.gene90181:CDS |
CTTTACTAGAAATGTAGATT+TGG | 0.384536 | 4.2:+19353662 | MS.gene90181:CDS |
CATTTGGTCCGTGGGAATCC+TGG | 0.387080 | 4.2:+19355413 | MS.gene90181:CDS |
CGCATGTTACCGTAATTTGC+AGG | 0.387863 | 4.2:-19350575 | None:intergenic |
GTAGCTGGTCCTGTATGTTT+GGG | 0.391436 | 4.2:+19353493 | MS.gene90181:CDS |
TTCACTACAAGCAAATCTAT+TGG | 0.391533 | 4.2:-19353613 | None:intergenic |
CTTTCATGAGTTGCATAATC+CGG | 0.391682 | 4.2:+19351385 | MS.gene90181:CDS |
CTACATTTAGTTGCTGCTCT+TGG | 0.391917 | 4.2:+19354011 | MS.gene90181:CDS |
ACACCTGCAGATCTTGCTTC+TGG | 0.393291 | 4.2:+19354666 | MS.gene90181:CDS |
ATGGCACAAAAGAAACTTTA+GGG | 0.395086 | 4.2:+19354778 | MS.gene90181:CDS |
TCCGTGCCCCATGAAATATC+AGG | 0.400653 | 4.2:-19352951 | None:intergenic |
GAATTGCAACGCCTGTGCAC+TGG | 0.401573 | 4.2:+19354829 | MS.gene90181:CDS |
TATCTTTCATAGGCAGGTTA+AGG | 0.405053 | 4.2:+19353905 | MS.gene90181:CDS |
TCTCTGACCCTCGTTTGAAT+TGG | 0.406378 | 4.2:-19351658 | None:intergenic |
ATTCCCACGGACCAAATGAT+TGG | 0.406432 | 4.2:-19355408 | None:intergenic |
ATTTAGCAGACGCCTGTATT+GGG | 0.411016 | 4.2:-19355646 | None:intergenic |
AATTGCAACGCCTGTGCACT+GGG | 0.412088 | 4.2:+19354830 | MS.gene90181:CDS |
CGCTCCAGCAGCTGCACCCA+TGG | 0.413239 | 4.2:-19354607 | None:intergenic |
GTCTTCCCCTGATATTTCAT+GGG | 0.413274 | 4.2:+19352944 | MS.gene90181:CDS |
TAATCTGAGTTCGATAAATT+CGG | 0.414296 | 4.2:+19355794 | MS.gene90181:CDS |
AAGAAGTTAAAGTGCTTGTT+GGG | 0.415064 | 4.2:-19350622 | None:intergenic |
CCTCATGTGTTTGGTAAAGA+TGG | 0.417549 | 4.2:+19353978 | MS.gene90181:CDS |
AGAAGTACAAACCAATCATT+TGG | 0.419166 | 4.2:+19355397 | MS.gene90181:CDS |
GCTTCTAAGTCATCCAAATC+TGG | 0.420233 | 4.2:+19355035 | MS.gene90181:CDS |
GGTTGCTCTCCTTGTCTCCA+TGG | 0.421375 | 4.2:+19354590 | MS.gene90181:CDS |
TGAAGGCACATATCTTTCAT+AGG | 0.423985 | 4.2:+19353895 | MS.gene90181:CDS |
TATAGTATTTGTCCACTACT+TGG | 0.426647 | 4.2:+19349318 | MS.gene90181:CDS |
CAAGCTCCACCTCATGAGAT+TGG | 0.428339 | 4.2:+19353564 | MS.gene90181:CDS |
GGGAAGGCTGGTTGGTTGGT+TGG | 0.428381 | 4.2:-19355511 | None:intergenic |
ACTGGAGGAGTTACTTACTT+TGG | 0.436854 | 4.2:+19353728 | MS.gene90181:CDS |
GCCAGATGCTATATGCCTTA+AGG | 0.440387 | 4.2:+19354860 | MS.gene90181:CDS |
CAGCGGCTTGTGTAGCATTA+CGG | 0.442930 | 4.2:-19354899 | None:intergenic |
CAACTTCTTACCTATGGCAT+TGG | 0.443601 | 4.2:+19355875 | MS.gene90181:CDS |
CAGAAGCTCGGGCCCAATAC+AGG | 0.444672 | 4.2:+19355634 | MS.gene90181:CDS |
GGCACATATCTTTCATAGGC+AGG | 0.447036 | 4.2:+19353899 | MS.gene90181:CDS |
TAAAGTGCTTGTTGGGCTCA+TGG | 0.450539 | 4.2:-19350615 | None:intergenic |
GGTAAAGGACCTCATGTGTT+TGG | 0.450817 | 4.2:+19353969 | MS.gene90181:CDS |
AATGTCATGGATAAATCTTC+AGG | 0.452873 | 4.2:+19351705 | MS.gene90181:CDS |
TAGAAAATACCTTGGTTTGA+CGG | 0.454767 | 4.2:-19355683 | None:intergenic |
ACCAACCAGCCTTCCCGAAA+AGG | 0.456564 | 4.2:+19355518 | MS.gene90181:CDS |
CATCCATTGTGAGTGATTCC+AGG | 0.456642 | 4.2:-19354743 | None:intergenic |
GTTTGTACTTCTTTCTTACC+TGG | 0.458365 | 4.2:-19355386 | None:intergenic |
CAGGTTAACAAGACCAATGT+AGG | 0.458647 | 4.2:+19350485 | MS.gene90181:intron |
TCCTTAAGGCATATAGCATC+TGG | 0.459831 | 4.2:-19354861 | None:intergenic |
AAAGGATAGTAACCTGAAAA+CGG | 0.462345 | 4.2:-19351467 | None:intergenic |
TTAACTCCAGAAGTTACAAT+TGG | 0.464038 | 4.2:-19354053 | None:intergenic |
GAAAACGGGTGCATAAGATA+TGG | 0.464608 | 4.2:-19351452 | None:intergenic |
AAGGGCAGTTCTATGTCATC+TGG | 0.466818 | 4.2:+19350548 | MS.gene90181:CDS |
CTCCACCTCATGAGATTGGA+TGG | 0.469878 | 4.2:+19353568 | MS.gene90181:CDS |
TGATGACAACTTCTTACCTA+TGG | 0.472509 | 4.2:+19355869 | MS.gene90181:CDS |
GCAGATCTTGCTTCTGGCGA+TGG | 0.474264 | 4.2:+19354672 | MS.gene90181:CDS |
TTGGAGAAGGTTACGTAGAA+AGG | 0.479331 | 4.2:-19353594 | None:intergenic |
CCCTGATATTTCATGGGGCA+CGG | 0.479386 | 4.2:+19352950 | MS.gene90181:CDS |
GCCTCCAATAACTTCGCCTC+TGG | 0.480180 | 4.2:-19348985 | None:intergenic |
GAGTTGCATAATCCGGGAAA+TGG | 0.480366 | 4.2:+19351392 | MS.gene90181:CDS |
TACCTGGTGACCTCTTACAT+GGG | 0.482192 | 4.2:-19355370 | None:intergenic |
AAGGATAGTAACCTGAAAAC+GGG | 0.482248 | 4.2:-19351466 | None:intergenic |
TGCGAAACACTGAGCTTGCT+TGG | 0.482928 | 4.2:-19351361 | None:intergenic |
CCATTAGCTAAAATCGTAGC+TGG | 0.483148 | 4.2:-19353528 | None:intergenic |
GGAGCGTTCTTCTCCCGAAA+TGG | 0.484215 | 4.2:+19346782 | MS.gene90181:CDS |
GTTCTTCCTGAAGGGAATGC+TGG | 0.486036 | 4.2:-19354645 | None:intergenic |
ATAGCACCAATTGTAACTTC+TGG | 0.488450 | 4.2:+19354047 | MS.gene90181:CDS |
CCTGAAGGGAATGCTGGACA+TGG | 0.490271 | 4.2:-19354639 | None:intergenic |
TATTTGTACTGCAGCAGCAT+TGG | 0.491242 | 4.2:-19355075 | None:intergenic |
ATGGATGGACGGCTCTACAC+TGG | 0.493508 | 4.2:+19354096 | MS.gene90181:CDS |
AGAATTCCTAATATCTCTGC+AGG | 0.493849 | 4.2:-19348071 | None:intergenic |
TCAAAGAGTTGTCAAAATCC+AGG | 0.494158 | 4.2:+19355148 | MS.gene90181:CDS |
CAGCATCAAGAGAATCCTTA+AGG | 0.496736 | 4.2:-19354875 | None:intergenic |
GAGCACTCAACATAGGGTCC+TGG | 0.496971 | 4.2:+19351679 | MS.gene90181:CDS |
TCGAGTAATGAAGAGCCAAC+TGG | 0.497413 | 4.2:+19353846 | MS.gene90181:CDS |
TTGAGGCACTTTAGAAGGGA+TGG | 0.497421 | 4.2:+19348673 | MS.gene90181:CDS |
CGGTGGAGGCGTAAGGGCAG+TGG | 0.498062 | 4.2:+19355450 | MS.gene90181:CDS |
GGATGATACAGGGGAAGGTT+CGG | 0.500961 | 4.2:-19351736 | None:intergenic |
TTTCGGGAAGGCTGGTTGGT+TGG | 0.502036 | 4.2:-19355515 | None:intergenic |
AATGCGACATCATTTGCAAC+TGG | 0.503844 | 4.2:+19353710 | MS.gene90181:CDS |
TATATTACGGTGGAGGCGTA+AGG | 0.504437 | 4.2:+19355443 | MS.gene90181:CDS |
TTATGCTGATTCAGAAATTG+AGG | 0.506793 | 4.2:+19353067 | MS.gene90181:CDS |
GAAATATCCATCTCTCCAGT+TGG | 0.507509 | 4.2:-19353861 | None:intergenic |
AGAAGTTACAATTGGTGCTA+TGG | 0.508586 | 4.2:-19354045 | None:intergenic |
TGTGATAGATGATACCTCAT+TGG | 0.509091 | 4.2:+19352986 | MS.gene90181:CDS |
TTTATCCATGACATTGTCCC+AGG | 0.509557 | 4.2:-19351697 | None:intergenic |
GTCTCTGCAATCAAATTGGC+AGG | 0.510338 | 4.2:+19351812 | MS.gene90181:CDS |
TCCTGGAGAAGGTTATATTA+CGG | 0.511577 | 4.2:+19355430 | MS.gene90181:CDS |
ATGGATGATGTCAATAAAGA+TGG | 0.511593 | 4.2:+19354759 | MS.gene90181:CDS |
GTTGCTCTCCTTGTCTCCAT+GGG | 0.517325 | 4.2:+19354591 | MS.gene90181:CDS |
CTACACTGGGCTGCATCATG+TGG | 0.518678 | 4.2:+19354110 | MS.gene90181:CDS |
ATGTTAAAGGCCCATGTAAG+AGG | 0.521276 | 4.2:+19355360 | MS.gene90181:intron |
CATGGACTTAACCCTTAAAA+GGG | 0.522222 | 4.2:-19355601 | None:intergenic |
TTCCACTTCCCCAAACATAC+AGG | 0.522582 | 4.2:-19353502 | None:intergenic |
TAGAAACCATACTCGGTGGC+CGG | 0.524497 | 4.2:-19348136 | None:intergenic |
CAGAAGTGACAACGTGTAGC+TGG | 0.528053 | 4.2:+19353478 | MS.gene90181:CDS |
CAGGAATTTGAGTACAAAGA+GGG | 0.529312 | 4.2:+19353639 | MS.gene90181:CDS |
TTAGAAGGGATGGATACAAC+TGG | 0.529528 | 4.2:+19348683 | MS.gene90181:CDS |
AAATCAAAAGAAAATAGGTC+AGG | 0.530279 | 4.2:-19352783 | None:intergenic |
TTTCATGAGTTGCATAATCC+GGG | 0.531246 | 4.2:+19351386 | MS.gene90181:CDS |
AGGCATAAGTACAGATACTA+AGG | 0.532801 | 4.2:+19350505 | MS.gene90181:CDS |
TTGCAACGCCTGTGCACTGG+GGG | 0.533191 | 4.2:+19354832 | MS.gene90181:CDS |
TGAAGAGCCAACTGGAGAGA+TGG | 0.533599 | 4.2:+19353854 | MS.gene90181:CDS |
ATCAACTTCCGTGATGTGAA+TGG | 0.534863 | 4.2:+19354077 | MS.gene90181:CDS |
CTCATGTGTTTGGTAAAGAT+GGG | 0.535877 | 4.2:+19353979 | MS.gene90181:CDS |
TCGCCAGAAGCAAGATCTGC+AGG | 0.537099 | 4.2:-19354669 | None:intergenic |
TCTGTCTTCAACGAAGGAAG+TGG | 0.537368 | 4.2:+19351783 | MS.gene90181:CDS |
ACTGGGCTGCATCATGTGGC+AGG | 0.538074 | 4.2:+19354114 | MS.gene90181:CDS |
ACCATACTCGGTGGCCGGGT+AGG | 0.538324 | 4.2:-19348131 | None:intergenic |
TCCAGAGGCGAAGTTATTGG+AGG | 0.539110 | 4.2:+19348984 | MS.gene90181:CDS |
GCTTCTGGCGATGGCCAGAA+AGG | 0.539832 | 4.2:+19354681 | MS.gene90181:CDS |
TTACCTCCCACTTGTTCAGT+GGG | 0.542639 | 4.2:+19351629 | MS.gene90181:CDS |
GGTCAGAGAGCACTCAACAT+AGG | 0.543054 | 4.2:+19351672 | MS.gene90181:CDS |
AGAAACCATACTCGGTGGCC+GGG | 0.543565 | 4.2:-19348135 | None:intergenic |
TGGTTCAGTATCCAGAAGCT+CGG | 0.545136 | 4.2:+19355622 | MS.gene90181:CDS |
GTCAGAGAGCACTCAACATA+GGG | 0.545853 | 4.2:+19351673 | MS.gene90181:CDS |
GGTTACATCAGATTCCCAAA+AGG | 0.546119 | 4.2:+19350529 | MS.gene90181:CDS |
GGTTCAGTATCCAGAAGCTC+GGG | 0.547885 | 4.2:+19355623 | MS.gene90181:CDS |
TATTTCAAAACACAGGTTGA+AGG | 0.548307 | 4.2:+19353878 | MS.gene90181:CDS |
ACCGTAATATAACCTTCTCC+AGG | 0.551191 | 4.2:-19355431 | None:intergenic |
ATCCAAATCTGGACATGGGG+AGG | 0.552979 | 4.2:+19355046 | MS.gene90181:CDS |
TCAGTATGAAGAGGATGATG+AGG | 0.553757 | 4.2:+19354974 | MS.gene90181:CDS |
AGTCATGTATGCTAAACAGC+TGG | 0.554108 | 4.2:-19353028 | None:intergenic |
GGAAGCTCATGAGAAGTTGA+AGG | 0.554386 | 4.2:+19348735 | MS.gene90181:CDS |
GCTGGTCTTGAGATAGAGAC+AGG | 0.556085 | 4.2:-19353010 | None:intergenic |
CGGATTATGCAACTCATGAA+AGG | 0.556996 | 4.2:-19351384 | None:intergenic |
AGTTTGAAGCACAGCATCGA+TGG | 0.557059 | 4.2:+19348042 | MS.gene90181:CDS |
TCTGCAGGTGTTCTTCCTGA+AGG | 0.557364 | 4.2:-19354654 | None:intergenic |
GAGTGAACAAAAGTTCCAAA+AGG | 0.557664 | 4.2:+19355578 | MS.gene90181:CDS |
GGCCCATGTAAGAGGTCACC+AGG | 0.559386 | 4.2:+19355368 | MS.gene90181:intron |
CTTTACTCAGTCGTTAAGCA+TGG | 0.560266 | 4.2:+19352686 | MS.gene90181:CDS |
ATTACCTCCCACTTGTTCAG+TGG | 0.560370 | 4.2:+19351628 | MS.gene90181:CDS |
GATTTACCCCACTGAACAAG+TGG | 0.561100 | 4.2:-19351636 | None:intergenic |
AACTATTCCGCTGAACTACT+GGG | 0.561115 | 4.2:+19352720 | MS.gene90181:CDS |
GTTACATCAGATTCCCAAAA+GGG | 0.561877 | 4.2:+19350530 | MS.gene90181:CDS |
GAGTTCGATAAATTCGGAAG+AGG | 0.562641 | 4.2:+19355800 | MS.gene90181:CDS |
TCTCAAAAGAACCGCCTACC+CGG | 0.563454 | 4.2:+19348117 | MS.gene90181:CDS |
AGCACTCAACATAGGGTCCT+GGG | 0.567035 | 4.2:+19351680 | MS.gene90181:CDS |
GATTAAAGAATTTGCATCAG+TGG | 0.567503 | 4.2:+19352905 | MS.gene90181:CDS |
AAAGTAACTGAAACTGGTAA+AGG | 0.568633 | 4.2:+19353954 | MS.gene90181:CDS |
CCGTGCCCCATGAAATATCA+GGG | 0.568861 | 4.2:-19352950 | None:intergenic |
ATACTCGGTGGCCGGGTAGG+CGG | 0.571941 | 4.2:-19348128 | None:intergenic |
TCAATGTCTGTCTTCAACGA+AGG | 0.572676 | 4.2:+19351777 | MS.gene90181:CDS |
GTCATTATTAACTAGCCACC+TGG | 0.573370 | 4.2:+19354725 | MS.gene90181:CDS |
CAGCTGCACCCATGGAGACA+AGG | 0.573677 | 4.2:-19354599 | None:intergenic |
CGTAAGGGCAGTGGTTTACG+TGG | 0.575467 | 4.2:+19355459 | MS.gene90181:CDS |
TTAAGGAGAAGCTGTACTCA+TGG | 0.575527 | 4.2:+19353922 | MS.gene90181:CDS |
AACCCATTTGAAGAAAATGC+GGG | 0.575833 | 4.2:+19352645 | MS.gene90181:CDS |
CTGCAGGTGTTCTTCCTGAA+GGG | 0.576107 | 4.2:-19354653 | None:intergenic |
TCCAAATCTGGACATGGGGA+GGG | 0.579121 | 4.2:+19355047 | MS.gene90181:CDS |
TGGATGGACGGCTCTACACT+GGG | 0.581082 | 4.2:+19354097 | MS.gene90181:CDS |
TACTTGATGTATTCTATCAG+CGG | 0.582154 | 4.2:-19354916 | None:intergenic |
ACCCATCCAATCTCATGAGG+TGG | 0.583328 | 4.2:-19353570 | None:intergenic |
AAGTCATCCAAATCTGGACA+TGG | 0.586904 | 4.2:+19355041 | MS.gene90181:CDS |
GTCCGTGGGAATCCTGGAGA+AGG | 0.588343 | 4.2:+19355419 | MS.gene90181:CDS |
AGGGTCCTGGGACAATGTCA+TGG | 0.588470 | 4.2:+19351692 | MS.gene90181:CDS |
ACAAGCAAATCTATTGGAGA+AGG | 0.590474 | 4.2:-19353607 | None:intergenic |
AAGGATCAATCCAATGCCAT+AGG | 0.590654 | 4.2:-19355885 | None:intergenic |
AAACCAATCATTTGGTCCGT+GGG | 0.591404 | 4.2:+19355405 | MS.gene90181:CDS |
GAAAAGAATTGGATGATACA+GGG | 0.592068 | 4.2:-19351746 | None:intergenic |
ATCTGTACTTATGCCTACAT+TGG | 0.592564 | 4.2:-19350498 | None:intergenic |
TCCGGGAAATGGTCCACAGA+CGG | 0.593297 | 4.2:+19351403 | MS.gene90181:CDS |
GCAGCTAGCTCAGTATGAAG+AGG | 0.595976 | 4.2:+19354965 | MS.gene90181:CDS |
ATCTTTCAAACATAGGTGGA+AGG | 0.598899 | 4.2:+19348911 | MS.gene90181:intron |
CAGGCGTCTGCTAAATGTAG+TGG | 0.601069 | 4.2:+19355653 | MS.gene90181:CDS |
TCTTCCCCTGATATTTCATG+GGG | 0.604539 | 4.2:+19352945 | MS.gene90181:CDS |
TTACCTTAACATCCAAGTAG+TGG | 0.606730 | 4.2:-19349330 | None:intergenic |
CAAACCAATCATTTGGTCCG+TGG | 0.607032 | 4.2:+19355404 | MS.gene90181:CDS |
AGAAGGTTATATTACGGTGG+AGG | 0.609021 | 4.2:+19355436 | MS.gene90181:CDS |
ATACACTGCTACTACGCCCA+TGG | 0.609101 | 4.2:+19348944 | MS.gene90181:CDS |
AACCAGCCTTCCCGAAAAGG+AGG | 0.610047 | 4.2:+19355521 | MS.gene90181:CDS |
ATATTACGGTGGAGGCGTAA+GGG | 0.610245 | 4.2:+19355444 | MS.gene90181:CDS |
AGAGGCAGCTGACGGTGTGG+AGG | 0.612968 | 4.2:+19355818 | MS.gene90181:CDS |
TCAGGAATTTGAGTACAAAG+AGG | 0.616104 | 4.2:+19353638 | MS.gene90181:CDS |
AGTCATCCAAATCTGGACAT+GGG | 0.619839 | 4.2:+19355042 | MS.gene90181:CDS |
GTCATCCAAATCTGGACATG+GGG | 0.620280 | 4.2:+19355043 | MS.gene90181:CDS |
TTATATGCTCAGAGAGAGAA+CGG | 0.620970 | 4.2:+19354569 | MS.gene90181:intron |
AGATGGATATTTCAAAACAC+AGG | 0.621087 | 4.2:+19353871 | MS.gene90181:CDS |
ACTTCCGTGATGTGAATGGA+TGG | 0.622379 | 4.2:+19354081 | MS.gene90181:CDS |
CCGTCCATCCATTCACATCA+CGG | 0.622728 | 4.2:-19354085 | None:intergenic |
TCATGGGGCACGGATGAATG+TGG | 0.628341 | 4.2:+19352960 | MS.gene90181:CDS |
ACCCAAACCCAGTAGTTCAG+CGG | 0.628373 | 4.2:-19352727 | None:intergenic |
GAACCCATTTGAAGAAAATG+CGG | 0.632228 | 4.2:+19352644 | MS.gene90181:intron |
AACTGGCGAAAGAAGAACGA+TGG | 0.634955 | 4.2:+19348700 | MS.gene90181:CDS |
TCCACCTCATGAGATTGGAT+GGG | 0.636186 | 4.2:+19353569 | MS.gene90181:CDS |
CCGTGATGTGAATGGATGGA+CGG | 0.639667 | 4.2:+19354085 | MS.gene90181:CDS |
AACCTTCTCCAGGATTCCCA+CGG | 0.641059 | 4.2:-19355421 | None:intergenic |
GAATTGGATGATACAGGGGA+AGG | 0.641814 | 4.2:-19351741 | None:intergenic |
GCATCAATCTTATCCGTCTG+TGG | 0.641952 | 4.2:-19351416 | None:intergenic |
GCGACATCATTTGCAACTGG+AGG | 0.643033 | 4.2:+19353713 | MS.gene90181:CDS |
CCACCTGGAATCACTCACAA+TGG | 0.644430 | 4.2:+19354740 | MS.gene90181:CDS |
AAAAGAATTGGATGATACAG+GGG | 0.645982 | 4.2:-19351745 | None:intergenic |
AATTCGGAAGAGGCAGCTGA+CGG | 0.647751 | 4.2:+19355810 | MS.gene90181:CDS |
CCATTTGAAGAAAATGCGGG+CGG | 0.658580 | 4.2:+19352648 | MS.gene90181:CDS |
GTGGCTAGTTAATAATGACT+CGG | 0.659900 | 4.2:-19354721 | None:intergenic |
GGAAGAGGCAGCTGACGGTG+TGG | 0.671629 | 4.2:+19355815 | MS.gene90181:CDS |
GGAACCCATCCAATCTCATG+AGG | 0.671886 | 4.2:-19353573 | None:intergenic |
AGAAGCTGTCAACCTTCGTG+AGG | 0.672119 | 4.2:-19352875 | None:intergenic |
CATAAGTACAGATACTAAGG+AGG | 0.672927 | 4.2:+19350508 | MS.gene90181:CDS |
AAGATAATGAAAATTTCCAG+AGG | 0.673367 | 4.2:+19348969 | MS.gene90181:CDS |
GGGTAAATCCAATTCAAACG+AGG | 0.675725 | 4.2:+19351650 | MS.gene90181:CDS |
GGTAAATCCAATTCAAACGA+GGG | 0.679092 | 4.2:+19351651 | MS.gene90181:CDS |
AGATAGAGACAGGTCCAATG+AGG | 0.681492 | 4.2:-19353000 | None:intergenic |
ATTGCAACGCCTGTGCACTG+GGG | 0.681592 | 4.2:+19354831 | MS.gene90181:CDS |
CCATCTTTACCAAACACATG+AGG | 0.684954 | 4.2:-19353978 | None:intergenic |
TGGAGAAGGTTATATTACGG+TGG | 0.685543 | 4.2:+19355433 | MS.gene90181:CDS |
GAATTCCTAATATCTCTGCA+GGG | 0.686153 | 4.2:-19348070 | None:intergenic |
AGCTTCTGGATACTGAACCA+TGG | 0.689349 | 4.2:-19355619 | None:intergenic |
TGCTAAAGAGAGCCTCACGA+AGG | 0.690094 | 4.2:+19352863 | MS.gene90181:CDS |
TAGCTGGTCCTGTATGTTTG+GGG | 0.692929 | 4.2:+19353494 | MS.gene90181:CDS |
ATTTACCCCACTGAACAAGT+GGG | 0.693252 | 4.2:-19351635 | None:intergenic |
TACCTCCCACTTGTTCAGTG+GGG | 0.703440 | 4.2:+19351630 | MS.gene90181:CDS |
TACCCCACTGAACAAGTGGG+AGG | 0.704031 | 4.2:-19351632 | None:intergenic |
GGACGATTACCGTCAAACCA+AGG | 0.706351 | 4.2:+19355674 | MS.gene90181:CDS |
CGTGCCCCATGAAATATCAG+GGG | 0.706527 | 4.2:-19352949 | None:intergenic |
GTGTTTGGTAAAGATGGGCA+AGG | 0.707666 | 4.2:+19353984 | MS.gene90181:CDS |
TGTGCATCACAACTTGCACA+CGG | 0.708380 | 4.2:+19352824 | MS.gene90181:CDS |
TGCAACGCCTGTGCACTGGG+GGG | 0.729574 | 4.2:+19354833 | MS.gene90181:CDS |
CCATTGTGAGTGATTCCAGG+TGG | 0.730255 | 4.2:-19354740 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 19346777 | 19355902 | 19346777 | ID=MS.gene90181 |
chr4.2 | mRNA | 19346777 | 19355902 | 19346777 | ID=MS.gene90181.t1;Parent=MS.gene90181 |
chr4.2 | exon | 19346777 | 19346816 | 19346777 | ID=MS.gene90181.t1.exon1;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19346777 | 19346816 | 19346777 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19348027 | 19348146 | 19348027 | ID=MS.gene90181.t1.exon2;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19348027 | 19348146 | 19348027 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19348641 | 19348756 | 19348641 | ID=MS.gene90181.t1.exon3;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19348641 | 19348756 | 19348641 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19348926 | 19349014 | 19348926 | ID=MS.gene90181.t1.exon4;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19348926 | 19349014 | 19348926 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19349306 | 19349348 | 19349306 | ID=MS.gene90181.t1.exon5;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19349306 | 19349348 | 19349306 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19350488 | 19350665 | 19350488 | ID=MS.gene90181.t1.exon6;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19350488 | 19350665 | 19350488 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19351351 | 19351476 | 19351351 | ID=MS.gene90181.t1.exon7;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19351351 | 19351476 | 19351351 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19351622 | 19351833 | 19351622 | ID=MS.gene90181.t1.exon8;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19351622 | 19351833 | 19351622 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19352645 | 19353088 | 19352645 | ID=MS.gene90181.t1.exon9;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19352645 | 19353088 | 19352645 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19353444 | 19354135 | 19353444 | ID=MS.gene90181.t1.exon10;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19353444 | 19354135 | 19353444 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19354581 | 19355169 | 19354581 | ID=MS.gene90181.t1.exon11;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19354581 | 19355169 | 19354581 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19355369 | 19355695 | 19355369 | ID=MS.gene90181.t1.exon12;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19355369 | 19355695 | 19355369 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
chr4.2 | exon | 19355789 | 19355902 | 19355789 | ID=MS.gene90181.t1.exon13;Parent=MS.gene90181.t1 |
chr4.2 | CDS | 19355789 | 19355902 | 19355789 | ID=cds.MS.gene90181.t1;Parent=MS.gene90181.t1 |
Gene Sequence |
Protein sequence |