Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35070.t1 | XP_013457254.1 | 96.4 | 394 | 12 | 1 | 1 | 392 | 1 | 394 | 3.60E-191 | 677.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35070.t1 | A0A072UZK1 | 96.4 | 394 | 12 | 1 | 1 | 392 | 1 | 394 | 2.6e-191 | 677.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050306 | MS.gene35070 | 0.800367 | 1.49E-48 | -1.69E-46 |
| MS.gene057392 | MS.gene35070 | 0.806078 | 9.80E-50 | -1.69E-46 |
| MS.gene058632 | MS.gene35070 | 0.902516 | 8.96E-79 | -1.69E-46 |
| MS.gene058634 | MS.gene35070 | 0.990268 | 7.77E-182 | -1.69E-46 |
| MS.gene05978 | MS.gene35070 | 0.802327 | 5.91E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35070.t1 | MTR_4g094375 | 96.447 | 394 | 12 | 1 | 1 | 392 | 1 | 394 | 0.0 | 779 |
| MS.gene35070.t1 | MTR_1g098700 | 53.676 | 408 | 164 | 4 | 1 | 388 | 1 | 403 | 4.26e-156 | 446 |
| MS.gene35070.t1 | MTR_6g037000 | 53.887 | 373 | 161 | 5 | 18 | 384 | 9 | 376 | 1.32e-139 | 403 |
| MS.gene35070.t1 | MTR_6g036920 | 53.476 | 374 | 163 | 5 | 18 | 385 | 9 | 377 | 8.22e-135 | 390 |
| MS.gene35070.t1 | MTR_6g037010 | 48.387 | 341 | 145 | 3 | 44 | 384 | 9 | 318 | 2.96e-109 | 324 |
| MS.gene35070.t1 | MTR_8g098895 | 42.239 | 393 | 203 | 11 | 2 | 384 | 3 | 381 | 3.42e-83 | 259 |
| MS.gene35070.t1 | MTR_6g037060 | 53.659 | 205 | 84 | 5 | 18 | 216 | 9 | 208 | 5.47e-65 | 206 |
| MS.gene35070.t1 | MTR_6g036980 | 53.642 | 151 | 65 | 2 | 44 | 190 | 9 | 158 | 8.73e-49 | 162 |
| MS.gene35070.t1 | MTR_6g037070 | 53.030 | 132 | 61 | 1 | 256 | 386 | 1 | 132 | 4.70e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35070.t1 | AT1G74450 | 54.020 | 398 | 163 | 5 | 1 | 385 | 1 | 391 | 9.79e-145 | 417 |
| MS.gene35070.t1 | AT1G18740 | 53.807 | 394 | 160 | 7 | 1 | 384 | 1 | 382 | 2.50e-144 | 415 |
| MS.gene35070.t1 | AT1G43630 | 52.308 | 390 | 168 | 8 | 1 | 385 | 31 | 407 | 1.24e-135 | 394 |
| MS.gene35070.t1 | AT1G63930 | 36.516 | 419 | 213 | 13 | 2 | 384 | 3 | 404 | 1.34e-84 | 264 |
| MS.gene35070.t1 | AT4G11300 | 37.245 | 392 | 212 | 9 | 2 | 384 | 3 | 369 | 3.16e-71 | 228 |
| MS.gene35070.t1 | AT4G23530 | 34.293 | 382 | 220 | 9 | 20 | 379 | 13 | 385 | 3.65e-53 | 181 |
Find 105 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGCGTCATAGATCTTT+TGG | 0.183195 | 4.4:-20365759 | MS.gene35070:CDS |
| AACGATCTGCAACACGCTTT+TGG | 0.237316 | 4.4:+20366159 | None:intergenic |
| CATTGACCGAAGGGCAGTTT+AGG | 0.321777 | 4.4:-20365851 | MS.gene35070:CDS |
| AATGAGATTGCTGCAAATAA+AGG | 0.333425 | 4.4:-20365606 | MS.gene35070:CDS |
| GAAATTGTGAGTTGTGCTTT+AGG | 0.338068 | 4.4:-20365888 | MS.gene35070:CDS |
| TTCGGCTATCAACTATCTTT+CGG | 0.358993 | 4.4:+20365193 | None:intergenic |
| TCAGCAAGCCGCTTGAGTTC+CGG | 0.359891 | 4.4:+20365397 | None:intergenic |
| TACTCCATGTAAATTGCTTC+GGG | 0.371358 | 4.4:+20365475 | None:intergenic |
| ATTACATGTTCTTCGGTCAA+TGG | 0.376136 | 4.4:+20365309 | None:intergenic |
| TGTTGCAGCTATTCCTTGTC+AGG | 0.377112 | 4.4:-20365526 | MS.gene35070:CDS |
| CAGCTATTCCTTGTCAGGAC+AGG | 0.387126 | 4.4:-20365521 | MS.gene35070:CDS |
| CTTTCTTCTTTGACTCGTCC+AGG | 0.391519 | 4.4:+20365424 | None:intergenic |
| ATGATTGATGAGAAAGAATC+AGG | 0.391748 | 4.4:-20365792 | MS.gene35070:CDS |
| CATGTAAATTGCTTCGGGAT+TGG | 0.393587 | 4.4:+20365480 | None:intergenic |
| CCGTATGTGGCAAAAGCAAC+TGG | 0.397968 | 4.4:-20365910 | MS.gene35070:CDS |
| GTACTCCATGTAAATTGCTT+CGG | 0.402466 | 4.4:+20365474 | None:intergenic |
| ACATGTAATGGAAGTTGAAC+AGG | 0.406076 | 4.4:-20365295 | MS.gene35070:CDS |
| TCTTTGACTCGTCCAGGATC+CGG | 0.408725 | 4.4:+20365430 | None:intergenic |
| AACTTCCATTACATGTTCTT+CGG | 0.411299 | 4.4:+20365302 | None:intergenic |
| ATGAATTGCTCTCGATTGAT+TGG | 0.412007 | 4.4:-20366109 | MS.gene35070:CDS |
| TCCCTCACGTGGCGCTCCAA+TGG | 0.431848 | 4.4:+20365222 | None:intergenic |
| TCATTTGGTAGATCGTTGTT+TGG | 0.434869 | 4.4:-20366257 | MS.gene35070:CDS |
| TAGAGACGGGTTGGATCCAT+TGG | 0.436358 | 4.4:-20365238 | MS.gene35070:CDS |
| GGCATTCAAGATCACATTCA+TGG | 0.437225 | 4.4:-20365701 | MS.gene35070:CDS |
| TGCAATGGACTGTAGTTGCT+TGG | 0.438495 | 4.4:+20365653 | None:intergenic |
| CTAAACTGCCCTTCGGTCAA+TGG | 0.439271 | 4.4:+20365852 | None:intergenic |
| AGCTATTCCTTGTCAGGACA+GGG | 0.440449 | 4.4:-20365520 | MS.gene35070:CDS |
| CTTGGCACATCAAACTATAC+AGG | 0.441341 | 4.4:-20365153 | MS.gene35070:CDS |
| GACAGCCACCCGCCACTTGA+CGG | 0.443396 | 4.4:-20365355 | MS.gene35070:CDS |
| CAATCCCGAAGCAATTTACA+TGG | 0.448669 | 4.4:-20365479 | MS.gene35070:CDS |
| GGAAGTTGAACAGGATTTGA+AGG | 0.450865 | 4.4:-20365286 | MS.gene35070:CDS |
| ATCTTTATTATTCAACAGAA+TGG | 0.452561 | 4.4:+20366037 | None:intergenic |
| CATTTGCACGAGGTGGAACC+AGG | 0.462052 | 4.4:+20365625 | None:intergenic |
| GCAGTTTAGGAGGGCGAGAA+AGG | 0.470954 | 4.4:-20365838 | MS.gene35070:CDS |
| GTTTGGTATGAGGCAGGACC+AGG | 0.472376 | 4.4:-20366240 | MS.gene35070:CDS |
| ATGAGATTGCTGCAAATAAA+GGG | 0.480948 | 4.4:-20365605 | MS.gene35070:CDS |
| CGCCCTCCTAAACTGCCCTT+CGG | 0.482592 | 4.4:+20365845 | None:intergenic |
| GGGAATCAAGCCCCTCAGTT+CGG | 0.484799 | 4.4:+20365175 | None:intergenic |
| TTCAGATGTCATACGATCCA+TGG | 0.485962 | 4.4:+20365998 | None:intergenic |
| CTCACTTTACGACCGGATCC+TGG | 0.488384 | 4.4:-20365442 | MS.gene35070:CDS |
| ATCGTTGTTTGGTATGAGGC+AGG | 0.489438 | 4.4:-20366246 | MS.gene35070:CDS |
| CATGGAGTGTCTCTAGGTCC+TGG | 0.490607 | 4.4:-20365683 | MS.gene35070:CDS |
| TGTGGAAGCAAGTCATGAAC+CGG | 0.491995 | 4.4:-20366210 | MS.gene35070:CDS |
| TAGTTGCTTGGCTGCAGACC+AGG | 0.494155 | 4.4:+20365665 | None:intergenic |
| GTAGATCGTTGTTTGGTATG+AGG | 0.498240 | 4.4:-20366250 | MS.gene35070:CDS |
| ACTGAGGGGCTTGATTCCCT+TGG | 0.498467 | 4.4:-20365171 | MS.gene35070:CDS |
| TGACCGAAGGGCAGTTTAGG+AGG | 0.504334 | 4.4:-20365848 | MS.gene35070:CDS |
| ATTTGTAATGCGGGTCGAGA+TGG | 0.508247 | 4.4:-20365945 | MS.gene35070:CDS |
| ATTGACCGAAGAACATGTAA+TGG | 0.508630 | 4.4:-20365307 | MS.gene35070:CDS |
| GACGAAAACGATGAAGAAGA+AGG | 0.517630 | 4.4:+20366278 | None:intergenic |
| TTTGTAATGCGGGTCGAGAT+GGG | 0.522127 | 4.4:-20365944 | MS.gene35070:CDS |
| TACCAGGTCCGTCAAGTGGC+GGG | 0.523722 | 4.4:+20365347 | None:intergenic |
| GATTCGTGTAATCTAGAGCT+TGG | 0.523932 | 4.4:-20366188 | MS.gene35070:CDS |
| CGAGAGCAATTCATAATCAC+TGG | 0.525583 | 4.4:+20366118 | None:intergenic |
| CACCCGCCACTTGACGGACC+TGG | 0.528971 | 4.4:-20365349 | MS.gene35070:CDS |
| GCACTAGACATTTGTAATGC+GGG | 0.531981 | 4.4:-20365954 | MS.gene35070:CDS |
| TGGAACCAGGTTATTTGCAA+TGG | 0.532348 | 4.4:+20365638 | None:intergenic |
| TCCATTGGAGCGCCACGTGA+GGG | 0.533658 | 4.4:-20365223 | MS.gene35070:CDS |
| AGCTCTAGATTACACGAATC+CGG | 0.535203 | 4.4:+20366191 | None:intergenic |
| GAGGGCGAGAAAGGCACTGA+TGG | 0.537995 | 4.4:-20365829 | MS.gene35070:CDS |
| GAACTCAAGCGGCTTGCTGA+AGG | 0.542765 | 4.4:-20365394 | MS.gene35070:CDS |
| CACATTCATGGAGTGTCTCT+AGG | 0.544575 | 4.4:-20365689 | MS.gene35070:CDS |
| ATCTGAATTCATTGAGAGGT+CGG | 0.548398 | 4.4:-20365982 | MS.gene35070:CDS |
| CAGTTGCCTCACTTTACGAC+CGG | 0.549884 | 4.4:-20365449 | MS.gene35070:CDS |
| GGCACTGATGGATTTAGCAC+TGG | 0.556578 | 4.4:-20365817 | MS.gene35070:CDS |
| ACAAGGAATAGCTGCAACAA+GGG | 0.556963 | 4.4:+20365530 | None:intergenic |
| GAAACTGAGCAGAATCTACC+AGG | 0.561373 | 4.4:+20365331 | None:intergenic |
| ATAGTTGATAGCCGAACTGA+GGG | 0.570229 | 4.4:-20365186 | MS.gene35070:CDS |
| GACCGAAGGGCAGTTTAGGA+GGG | 0.570937 | 4.4:-20365847 | MS.gene35070:CDS |
| GACAAGGAATAGCTGCAACA+AGG | 0.579699 | 4.4:+20365529 | None:intergenic |
| ACGAAAACGATGAAGAAGAA+GGG | 0.593698 | 4.4:+20366279 | None:intergenic |
| TTGCTTCCACAGAATGAACC+TGG | 0.596071 | 4.4:+20366222 | None:intergenic |
| GTTTGTGAGAATGCCTTCCA+CGG | 0.596488 | 4.4:-20366312 | None:intergenic |
| ATTGGAGCGCCACGTGAGGG+AGG | 0.597373 | 4.4:-20365220 | MS.gene35070:CDS |
| ATCCATTGGAGCGCCACGTG+AGG | 0.600405 | 4.4:-20365224 | MS.gene35070:CDS |
| TCAGATGTCATACGATCCAT+GGG | 0.603285 | 4.4:+20365999 | None:intergenic |
| CAGGTCCGTCAAGTGGCGGG+TGG | 0.603406 | 4.4:+20365350 | None:intergenic |
| GGCACTAGACATTTGTAATG+CGG | 0.604362 | 4.4:-20365955 | MS.gene35070:CDS |
| GCTATTCCTTGTCAGGACAG+GGG | 0.604712 | 4.4:-20365519 | MS.gene35070:CDS |
| CTACCAGGTCCGTCAAGTGG+CGG | 0.604768 | 4.4:+20365346 | None:intergenic |
| TTTAAACCCCTGTCCTGACA+AGG | 0.605039 | 4.4:+20365513 | None:intergenic |
| CTGTATAGTTTGATGTGCCA+AGG | 0.610377 | 4.4:+20365154 | None:intergenic |
| AGTCAAAGAAGAAAGAGCAC+CGG | 0.610994 | 4.4:-20365416 | MS.gene35070:CDS |
| GCAGGACCAGGTTCATTCTG+TGG | 0.612935 | 4.4:-20366228 | MS.gene35070:CDS |
| ATAAGCGACCATTGACCGAA+GGG | 0.613621 | 4.4:-20365860 | MS.gene35070:CDS |
| TGGGAGGCATAACTCGAGCA+AGG | 0.614020 | 4.4:-20365739 | MS.gene35070:CDS |
| ATTCATTGAGAGGTCGGTCA+AGG | 0.614129 | 4.4:-20365976 | MS.gene35070:CDS |
| GAATGGCTCTGAATTCATCA+TGG | 0.614996 | 4.4:+20366054 | None:intergenic |
| TTCGGAACACCTCCCTCACG+TGG | 0.618299 | 4.4:+20365211 | None:intergenic |
| GGATTGAGACTATCCGTATG+TGG | 0.621190 | 4.4:-20365923 | MS.gene35070:CDS |
| GCAATCTCATTTGCACGAGG+TGG | 0.622309 | 4.4:+20365618 | None:intergenic |
| TGTATAGTTTGATGTGCCAA+GGG | 0.623260 | 4.4:+20365155 | None:intergenic |
| TCAGTTATCGAAACCTCCCA+TGG | 0.624099 | 4.4:-20366015 | MS.gene35070:CDS |
| AAAGAGCACCGGAACTCAAG+CGG | 0.627839 | 4.4:-20365405 | MS.gene35070:CDS |
| CAGGATCCGGTCGTAAAGTG+AGG | 0.628978 | 4.4:+20365443 | None:intergenic |
| GATAGTTGATAGCCGAACTG+AGG | 0.632654 | 4.4:-20365187 | MS.gene35070:CDS |
| AATCTACCAGGTCCGTCAAG+TGG | 0.633418 | 4.4:+20365343 | None:intergenic |
| ACAGTCCATTGCAAATAACC+TGG | 0.633958 | 4.4:-20365643 | MS.gene35070:CDS |
| GCAAGGATAGTCATTCGACT+AGG | 0.636083 | 4.4:-20365722 | MS.gene35070:CDS |
| AATAAGCGACCATTGACCGA+AGG | 0.639297 | 4.4:-20365861 | MS.gene35070:CDS |
| TTGGCACATCAAACTATACA+GGG | 0.662135 | 4.4:-20365152 | MS.gene35070:CDS |
| TGACATCTGAATTCATTGAG+AGG | 0.667207 | 4.4:-20365986 | MS.gene35070:CDS |
| GATGTCATACGATCCATGGG+AGG | 0.675731 | 4.4:+20366002 | None:intergenic |
| GCAGCAATCTCATTTGCACG+AGG | 0.681247 | 4.4:+20365615 | None:intergenic |
| TAGTTGATAGCCGAACTGAG+GGG | 0.803639 | 4.4:-20365185 | MS.gene35070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATTATTCAACAGAA+TGG | + | chr4.4:20365414-20365433 | None:intergenic | 20.0% |
| !!! | ATCGTTTTAATGAACTTTCT+GGG | - | chr4.4:20365306-20365325 | MS.gene35070:CDS | 25.0% |
| AACTTCCATTACATGTTCTT+CGG | + | chr4.4:20366149-20366168 | None:intergenic | 30.0% | |
| AATGAGATTGCTGCAAATAA+AGG | - | chr4.4:20365842-20365861 | MS.gene35070:CDS | 30.0% | |
| ATGAGATTGCTGCAAATAAA+GGG | - | chr4.4:20365843-20365862 | MS.gene35070:CDS | 30.0% | |
| ATGATTGATGAGAAAGAATC+AGG | - | chr4.4:20365656-20365675 | MS.gene35070:CDS | 30.0% | |
| !! | GATCGTTTTAATGAACTTTC+TGG | - | chr4.4:20365305-20365324 | MS.gene35070:CDS | 30.0% |
| !! | TCGTTTTAATGAACTTTCTG+GGG | - | chr4.4:20365307-20365326 | MS.gene35070:CDS | 30.0% |
| !!! | GTATTCTCTTGTTTGTTTTG+TGG | - | chr4.4:20365894-20365913 | MS.gene35070:CDS | 30.0% |
| ACGAAAACGATGAAGAAGAA+GGG | + | chr4.4:20365172-20365191 | None:intergenic | 35.0% | |
| ATCTGAATTCATTGAGAGGT+CGG | - | chr4.4:20365466-20365485 | MS.gene35070:CDS | 35.0% | |
| ATGAATTGCTCTCGATTGAT+TGG | - | chr4.4:20365339-20365358 | MS.gene35070:CDS | 35.0% | |
| ATTACATGTTCTTCGGTCAA+TGG | + | chr4.4:20366142-20366161 | None:intergenic | 35.0% | |
| ATTGACCGAAGAACATGTAA+TGG | - | chr4.4:20366141-20366160 | MS.gene35070:CDS | 35.0% | |
| GAAATTGTGAGTTGTGCTTT+AGG | - | chr4.4:20365560-20365579 | MS.gene35070:CDS | 35.0% | |
| GTACTCCATGTAAATTGCTT+CGG | + | chr4.4:20365977-20365996 | None:intergenic | 35.0% | |
| TACTCCATGTAAATTGCTTC+GGG | + | chr4.4:20365976-20365995 | None:intergenic | 35.0% | |
| TCATTTGGTAGATCGTTGTT+TGG | - | chr4.4:20365191-20365210 | MS.gene35070:CDS | 35.0% | |
| TGACATCTGAATTCATTGAG+AGG | - | chr4.4:20365462-20365481 | MS.gene35070:CDS | 35.0% | |
| TGTATAGTTTGATGTGCCAA+GGG | + | chr4.4:20366296-20366315 | None:intergenic | 35.0% | |
| TTCGGCTATCAACTATCTTT+CGG | + | chr4.4:20366258-20366277 | None:intergenic | 35.0% | |
| TTGGCACATCAAACTATACA+GGG | - | chr4.4:20366296-20366315 | MS.gene35070:CDS | 35.0% | |
| ! | ACATGTAATGGAAGTTGAAC+AGG | - | chr4.4:20366153-20366172 | MS.gene35070:CDS | 35.0% |
| ! | TCTTCATCGTTTTCGTCATT+TGG | - | chr4.4:20365176-20365195 | MS.gene35070:CDS | 35.0% |
| ACAAGGAATAGCTGCAACAA+GGG | + | chr4.4:20365921-20365940 | None:intergenic | 40.0% | |
| ACAGTCCATTGCAAATAACC+TGG | - | chr4.4:20365805-20365824 | MS.gene35070:CDS | 40.0% | |
| CAATCCCGAAGCAATTTACA+TGG | - | chr4.4:20365969-20365988 | MS.gene35070:CDS | 40.0% | |
| CATGTAAATTGCTTCGGGAT+TGG | + | chr4.4:20365971-20365990 | None:intergenic | 40.0% | |
| CGAGAGCAATTCATAATCAC+TGG | + | chr4.4:20365333-20365352 | None:intergenic | 40.0% | |
| CTGTATAGTTTGATGTGCCA+AGG | + | chr4.4:20366297-20366316 | None:intergenic | 40.0% | |
| CTTGGCACATCAAACTATAC+AGG | - | chr4.4:20366295-20366314 | MS.gene35070:CDS | 40.0% | |
| GACGAAAACGATGAAGAAGA+AGG | + | chr4.4:20365173-20365192 | None:intergenic | 40.0% | |
| GCACTAGACATTTGTAATGC+GGG | - | chr4.4:20365494-20365513 | MS.gene35070:CDS | 40.0% | |
| GGAAGTTGAACAGGATTTGA+AGG | - | chr4.4:20366162-20366181 | MS.gene35070:CDS | 40.0% | |
| GGCACTAGACATTTGTAATG+CGG | - | chr4.4:20365493-20365512 | MS.gene35070:CDS | 40.0% | |
| GGCATTCAAGATCACATTCA+TGG | - | chr4.4:20365747-20365766 | MS.gene35070:CDS | 40.0% | |
| GTAGATCGTTGTTTGGTATG+AGG | - | chr4.4:20365198-20365217 | MS.gene35070:CDS | 40.0% | |
| TCAGATGTCATACGATCCAT+GGG | + | chr4.4:20365452-20365471 | None:intergenic | 40.0% | |
| TGGAACCAGGTTATTTGCAA+TGG | + | chr4.4:20365813-20365832 | None:intergenic | 40.0% | |
| TTCAGATGTCATACGATCCA+TGG | + | chr4.4:20365453-20365472 | None:intergenic | 40.0% | |
| ! | AGTCAAAGAAGAAAGAGCAC+CGG | - | chr4.4:20366032-20366051 | MS.gene35070:CDS | 40.0% |
| ! | CTCAGCGTCATAGATCTTTT+GGG | - | chr4.4:20365690-20365709 | MS.gene35070:CDS | 40.0% |
| ! | GATTCGTGTAATCTAGAGCT+TGG | - | chr4.4:20365260-20365279 | MS.gene35070:CDS | 40.0% |
| ! | TCTCAGCGTCATAGATCTTT+TGG | - | chr4.4:20365689-20365708 | MS.gene35070:CDS | 40.0% |
| !! | AGCTCTAGATTACACGAATC+CGG | + | chr4.4:20365260-20365279 | None:intergenic | 40.0% |
| !! | ATAGTTGATAGCCGAACTGA+GGG | - | chr4.4:20366262-20366281 | MS.gene35070:CDS | 40.0% |
| !! | CTTCAGAAGCTTTTAGAGAC+GGG | - | chr4.4:20366197-20366216 | MS.gene35070:CDS | 40.0% |
| !! | GAATGGCTCTGAATTCATCA+TGG | + | chr4.4:20365397-20365416 | None:intergenic | 40.0% |
| !! | GCTTCAGAAGCTTTTAGAGA+CGG | - | chr4.4:20366196-20366215 | MS.gene35070:CDS | 40.0% |
| AATAAGCGACCATTGACCGA+AGG | - | chr4.4:20365587-20365606 | MS.gene35070:CDS | 45.0% | |
| AGCTATTCCTTGTCAGGACA+GGG | - | chr4.4:20365928-20365947 | MS.gene35070:CDS | 45.0% | |
| ATAAGCGACCATTGACCGAA+GGG | - | chr4.4:20365588-20365607 | MS.gene35070:CDS | 45.0% | |
| ATCGTTGTTTGGTATGAGGC+AGG | - | chr4.4:20365202-20365221 | MS.gene35070:CDS | 45.0% | |
| ATTCATTGAGAGGTCGGTCA+AGG | - | chr4.4:20365472-20365491 | MS.gene35070:CDS | 45.0% | |
| ATTTGTAATGCGGGTCGAGA+TGG | - | chr4.4:20365503-20365522 | MS.gene35070:CDS | 45.0% | |
| GAAACTGAGCAGAATCTACC+AGG | + | chr4.4:20366120-20366139 | None:intergenic | 45.0% | |
| GACAAGGAATAGCTGCAACA+AGG | + | chr4.4:20365922-20365941 | None:intergenic | 45.0% | |
| GCAAGGATAGTCATTCGACT+AGG | - | chr4.4:20365726-20365745 | MS.gene35070:CDS | 45.0% | |
| GGATTGAGACTATCCGTATG+TGG | - | chr4.4:20365525-20365544 | MS.gene35070:CDS | 45.0% | |
| TCAGTTATCGAAACCTCCCA+TGG | - | chr4.4:20365433-20365452 | MS.gene35070:CDS | 45.0% | |
| TGTGGAAGCAAGTCATGAAC+CGG | - | chr4.4:20365238-20365257 | MS.gene35070:CDS | 45.0% | |
| TGTTGCAGCTATTCCTTGTC+AGG | - | chr4.4:20365922-20365941 | MS.gene35070:CDS | 45.0% | |
| TTGCTTCCACAGAATGAACC+TGG | + | chr4.4:20365229-20365248 | None:intergenic | 45.0% | |
| TTTAAACCCCTGTCCTGACA+AGG | + | chr4.4:20365938-20365957 | None:intergenic | 45.0% | |
| TTTGTAATGCGGGTCGAGAT+GGG | - | chr4.4:20365504-20365523 | MS.gene35070:CDS | 45.0% | |
| ! | AACGATCTGCAACACGCTTT+TGG | + | chr4.4:20365292-20365311 | None:intergenic | 45.0% |
| ! | AGCGTCATAGATCTTTTGGG+AGG | - | chr4.4:20365693-20365712 | MS.gene35070:CDS | 45.0% |
| ! | CACATTCATGGAGTGTCTCT+AGG | - | chr4.4:20365759-20365778 | MS.gene35070:CDS | 45.0% |
| ! | CTTTCTTCTTTGACTCGTCC+AGG | + | chr4.4:20366027-20366046 | None:intergenic | 45.0% |
| !! | AGAAGCTTTTAGAGACGGGT+TGG | - | chr4.4:20366201-20366220 | MS.gene35070:CDS | 45.0% |
| !! | GATAGTTGATAGCCGAACTG+AGG | - | chr4.4:20366261-20366280 | MS.gene35070:CDS | 45.0% |
| !! | TAGTTGATAGCCGAACTGAG+GGG | - | chr4.4:20366263-20366282 | MS.gene35070:CDS | 45.0% |
| !! | TGCAATGGACTGTAGTTGCT+TGG | + | chr4.4:20365798-20365817 | None:intergenic | 45.0% |
| !!! | CCAGTTGCTTTTGCCACATA+CGG | + | chr4.4:20365541-20365560 | None:intergenic | 45.0% |
| AATCTACCAGGTCCGTCAAG+TGG | + | chr4.4:20366108-20366127 | None:intergenic | 50.0% | |
| CAGCTATTCCTTGTCAGGAC+AGG | - | chr4.4:20365927-20365946 | MS.gene35070:CDS | 50.0% | |
| CAGTTGCCTCACTTTACGAC+CGG | - | chr4.4:20365999-20366018 | MS.gene35070:CDS | 50.0% | |
| CATTGACCGAAGGGCAGTTT+AGG | - | chr4.4:20365597-20365616 | MS.gene35070:CDS | 50.0% | |
| CCGTATGTGGCAAAAGCAAC+TGG | - | chr4.4:20365538-20365557 | MS.gene35070:CDS | 50.0% | |
| CTAAACTGCCCTTCGGTCAA+TGG | + | chr4.4:20365599-20365618 | None:intergenic | 50.0% | |
| GATGTCATACGATCCATGGG+AGG | + | chr4.4:20365449-20365468 | None:intergenic | 50.0% | |
| GCAATCTCATTTGCACGAGG+TGG | + | chr4.4:20365833-20365852 | None:intergenic | 50.0% | |
| GCAGCAATCTCATTTGCACG+AGG | + | chr4.4:20365836-20365855 | None:intergenic | 50.0% | |
| GCTATTCCTTGTCAGGACAG+GGG | - | chr4.4:20365929-20365948 | MS.gene35070:CDS | 50.0% | |
| ! | TCTTTGACTCGTCCAGGATC+CGG | + | chr4.4:20366021-20366040 | None:intergenic | 50.0% |
| !! | AAAGAGCACCGGAACTCAAG+CGG | - | chr4.4:20366043-20366062 | MS.gene35070:CDS | 50.0% |
| !! | AGAAGGGCTCTGATTTTCCG+TGG | + | chr4.4:20365156-20365175 | None:intergenic | 50.0% |
| !! | GGCACTGATGGATTTAGCAC+TGG | - | chr4.4:20365631-20365650 | MS.gene35070:CDS | 50.0% |
| !! | TAGAGACGGGTTGGATCCAT+TGG | - | chr4.4:20366210-20366229 | MS.gene35070:CDS | 50.0% |
| ACTGAGGGGCTTGATTCCCT+TGG | - | chr4.4:20366277-20366296 | MS.gene35070:CDS | 55.0% | |
| CAGGATCCGGTCGTAAAGTG+AGG | + | chr4.4:20366008-20366027 | None:intergenic | 55.0% | |
| CATTTGCACGAGGTGGAACC+AGG | + | chr4.4:20365826-20365845 | None:intergenic | 55.0% | |
| CTCACTTTACGACCGGATCC+TGG | - | chr4.4:20366006-20366025 | MS.gene35070:CDS | 55.0% | |
| GACCGAAGGGCAGTTTAGGA+GGG | - | chr4.4:20365601-20365620 | MS.gene35070:CDS | 55.0% | |
| GCAGGACCAGGTTCATTCTG+TGG | - | chr4.4:20365220-20365239 | MS.gene35070:CDS | 55.0% | |
| GCAGTTTAGGAGGGCGAGAA+AGG | - | chr4.4:20365610-20365629 | MS.gene35070:CDS | 55.0% | |
| GGGAATCAAGCCCCTCAGTT+CGG | + | chr4.4:20366276-20366295 | None:intergenic | 55.0% | |
| GTTTGGTATGAGGCAGGACC+AGG | - | chr4.4:20365208-20365227 | MS.gene35070:CDS | 55.0% | |
| TAGTTGCTTGGCTGCAGACC+AGG | + | chr4.4:20365786-20365805 | None:intergenic | 55.0% | |
| TCAGCAAGCCGCTTGAGTTC+CGG | + | chr4.4:20366054-20366073 | None:intergenic | 55.0% | |
| TGACCGAAGGGCAGTTTAGG+AGG | - | chr4.4:20365600-20365619 | MS.gene35070:CDS | 55.0% | |
| ! | CATGGAGTGTCTCTAGGTCC+TGG | - | chr4.4:20365765-20365784 | MS.gene35070:CDS | 55.0% |
| ! | TGGGAGGCATAACTCGAGCA+AGG | - | chr4.4:20365709-20365728 | MS.gene35070:CDS | 55.0% |
| !! | GAACTCAAGCGGCTTGCTGA+AGG | - | chr4.4:20366054-20366073 | MS.gene35070:CDS | 55.0% |
| !! | GGGCTCTGATTTTCCGTGGA+AGG | + | chr4.4:20365152-20365171 | None:intergenic | 55.0% |
| CGCCCTCCTAAACTGCCCTT+CGG | + | chr4.4:20365606-20365625 | None:intergenic | 60.0% | |
| CTACCAGGTCCGTCAAGTGG+CGG | + | chr4.4:20366105-20366124 | None:intergenic | 60.0% | |
| TACCAGGTCCGTCAAGTGGC+GGG | + | chr4.4:20366104-20366123 | None:intergenic | 60.0% | |
| TTCGGAACACCTCCCTCACG+TGG | + | chr4.4:20366240-20366259 | None:intergenic | 60.0% | |
| ! | ATCCATTGGAGCGCCACGTG+AGG | - | chr4.4:20366224-20366243 | MS.gene35070:CDS | 60.0% |
| ! | TCCATTGGAGCGCCACGTGA+GGG | - | chr4.4:20366225-20366244 | MS.gene35070:CDS | 60.0% |
| !! | GAGGGCGAGAAAGGCACTGA+TGG | - | chr4.4:20365619-20365638 | MS.gene35070:CDS | 60.0% |
| GACAGCCACCCGCCACTTGA+CGG | - | chr4.4:20366093-20366112 | MS.gene35070:CDS | 65.0% | |
| TCCCTCACGTGGCGCTCCAA+TGG | + | chr4.4:20366229-20366248 | None:intergenic | 65.0% | |
| ! | ATTGGAGCGCCACGTGAGGG+AGG | - | chr4.4:20366228-20366247 | MS.gene35070:CDS | 65.0% |
| ! | CACCCGCCACTTGACGGACC+TGG | - | chr4.4:20366099-20366118 | MS.gene35070:CDS | 70.0% |
| ! | CAGGTCCGTCAAGTGGCGGG+TGG | + | chr4.4:20366101-20366120 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 20365146 | 20366324 | 20365146 | ID=MS.gene35070 |
| chr4.4 | mRNA | 20365146 | 20366324 | 20365146 | ID=MS.gene35070.t1;Parent=MS.gene35070 |
| chr4.4 | exon | 20365146 | 20366324 | 20365146 | ID=MS.gene35070.t1.exon1;Parent=MS.gene35070.t1 |
| chr4.4 | CDS | 20365146 | 20366324 | 20365146 | ID=cds.MS.gene35070.t1;Parent=MS.gene35070.t1 |
| Gene Sequence |
| Protein sequence |
