Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050306.t1 | AES82055.2 | 95.5 | 379 | 15 | 1 | 1 | 379 | 25 | 401 | 6.00E-220 | 773.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050306.t1 | Q9FVS1 | 44.8 | 355 | 182 | 6 | 24 | 374 | 3 | 347 | 2.8e-85 | 317.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050306.t1 | A0A072U447 | 95.5 | 379 | 15 | 1 | 1 | 379 | 1 | 377 | 4.3e-220 | 773.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050306 | MS.gene051762 | 0.830873 | 2.30E-55 | -1.69E-46 |
| MS.gene050306 | MS.gene058634 | 0.814761 | 1.31E-51 | -1.69E-46 |
| MS.gene050306 | MS.gene24686 | 0.981146 | 6.97E-152 | -1.69E-46 |
| MS.gene050306 | MS.gene35070 | 0.800367 | 1.49E-48 | -1.69E-46 |
| MS.gene050306 | MS.gene35072 | 0.802773 | 4.79E-49 | -1.69E-46 |
| MS.gene050306 | MS.gene53476 | 0.804496 | 2.10E-49 | -1.69E-46 |
| MS.gene050306 | MS.gene59513 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene050306 | MS.gene67007 | 0.805987 | 1.02E-49 | -1.69E-46 |
| MS.gene050306 | MS.gene71236 | 0.808144 | 3.58E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050306 | MS.gene071037 | PPI |
| MS.gene95088 | MS.gene050306 | PPI |
| MS.gene98670 | MS.gene050306 | PPI |
| MS.gene050306 | MS.gene42893 | PPI |
| MS.gene050306 | MS.gene98671 | PPI |
| MS.gene050306 | MS.gene024275 | PPI |
| MS.gene050306 | MS.gene42889 | PPI |
| MS.gene050306 | MS.gene009311 | PPI |
| MS.gene050306 | MS.gene005636 | PPI |
| MS.gene064044 | MS.gene050306 | PPI |
| MS.gene050306 | MS.gene024343 | PPI |
| MS.gene050306 | MS.gene75065 | PPI |
| MS.gene75067 | MS.gene050306 | PPI |
| MS.gene050306 | MS.gene05311 | PPI |
| MS.gene071039 | MS.gene050306 | PPI |
| MS.gene050306 | MS.gene53925 | PPI |
| MS.gene050306 | MS.gene024341 | PPI |
| MS.gene52540 | MS.gene050306 | PPI |
| MS.gene03004 | MS.gene050306 | PPI |
| MS.gene050306 | MS.gene47120 | PPI |
| MS.gene050306 | MS.gene42887 | PPI |
| MS.gene050306 | MS.gene012753 | PPI |
| MS.gene050306 | MS.gene98673 | PPI |
| MS.gene050306 | MS.gene67877 | PPI |
| MS.gene59977 | MS.gene050306 | PPI |
| MS.gene050306 | MS.gene42891 | PPI |
| MS.gene050306 | MS.gene43440 | PPI |
| MS.gene33922 | MS.gene050306 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050306.t1 | MTR_7g104790 | 95.515 | 379 | 15 | 1 | 1 | 379 | 25 | 401 | 0.0 | 727 |
| MS.gene050306.t1 | MTR_7g104790 | 95.515 | 379 | 15 | 1 | 1 | 379 | 1 | 377 | 0.0 | 725 |
| MS.gene050306.t1 | MTR_7g104785 | 80.992 | 363 | 54 | 3 | 16 | 375 | 17 | 367 | 0.0 | 590 |
| MS.gene050306.t1 | MTR_1g059840 | 64.042 | 381 | 125 | 6 | 2 | 377 | 1 | 374 | 6.84e-173 | 487 |
| MS.gene050306.t1 | MTR_7g104760 | 70.629 | 143 | 25 | 1 | 215 | 357 | 14 | 139 | 2.25e-66 | 207 |
| MS.gene050306.t1 | MTR_2g034630 | 25.000 | 348 | 181 | 14 | 35 | 371 | 73 | 351 | 2.87e-15 | 76.6 |
| MS.gene050306.t1 | MTR_3g114970 | 25.826 | 333 | 185 | 14 | 34 | 329 | 5 | 312 | 1.02e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050306.t1 | AT1G57790 | 44.789 | 355 | 182 | 6 | 24 | 374 | 3 | 347 | 3.33e-101 | 303 |
| MS.gene050306.t1 | AT3G56470 | 41.880 | 351 | 179 | 7 | 32 | 376 | 27 | 358 | 3.83e-82 | 255 |
| MS.gene050306.t1 | AT4G00893 | 39.489 | 352 | 198 | 8 | 33 | 378 | 44 | 386 | 2.00e-79 | 249 |
| MS.gene050306.t1 | AT4G10660 | 41.000 | 300 | 161 | 6 | 62 | 354 | 3 | 293 | 8.81e-68 | 217 |
| MS.gene050306.t1 | AT4G12370 | 38.835 | 309 | 170 | 8 | 81 | 379 | 1 | 300 | 1.43e-67 | 216 |
| MS.gene050306.t1 | AT1G49360 | 34.527 | 391 | 213 | 15 | 8 | 372 | 61 | 434 | 6.78e-52 | 179 |
| MS.gene050306.t1 | AT1G49360 | 34.527 | 391 | 213 | 15 | 8 | 372 | 84 | 457 | 1.27e-51 | 179 |
| MS.gene050306.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.72e-51 | 176 |
| MS.gene050306.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.72e-51 | 176 |
| MS.gene050306.t1 | AT1G49360 | 35.813 | 363 | 192 | 14 | 37 | 373 | 8 | 355 | 1.72e-51 | 176 |
| MS.gene050306.t1 | AT3G18720 | 34.085 | 355 | 189 | 11 | 36 | 374 | 51 | 376 | 2.29e-50 | 173 |
| MS.gene050306.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 46 | 238 | 1 | 189 | 3.79e-48 | 163 |
| MS.gene050306.t1 | AT4G10695 | 43.216 | 199 | 97 | 3 | 46 | 238 | 1 | 189 | 3.79e-48 | 163 |
| MS.gene050306.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 33 | 164 | 9 | 134 | 1.34e-35 | 127 |
| MS.gene050306.t1 | AT4G12382 | 45.455 | 132 | 66 | 2 | 33 | 164 | 9 | 134 | 1.34e-35 | 127 |
| MS.gene050306.t1 | AT2G44735 | 40.260 | 154 | 78 | 5 | 139 | 288 | 109 | 252 | 5.65e-23 | 99.4 |
| MS.gene050306.t1 | AT4G10700 | 41.270 | 126 | 66 | 3 | 258 | 376 | 119 | 243 | 1.17e-20 | 90.5 |
| MS.gene050306.t1 | AT4G10700 | 47.312 | 93 | 43 | 2 | 62 | 154 | 3 | 89 | 3.97e-20 | 89.0 |
Find 88 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCTAACTTGAAAATTAT+TGG | 0.158009 | 7.2:+8151599 | None:intergenic |
| GAACCACCAAAAGACTTTAT+TGG | 0.163822 | 7.2:-8151338 | MS.gene050306:CDS |
| CAGAAGTTCTCAAAAGTATT+TGG | 0.184683 | 7.2:+8151365 | None:intergenic |
| TTCCCTAAAGTCCGTTTCTA+TGG | 0.238841 | 7.2:-8151461 | MS.gene050306:CDS |
| TTTCCATAGAAACGGACTTT+AGG | 0.272121 | 7.2:+8151458 | None:intergenic |
| GATCTAACTTGAAAATTATT+GGG | 0.325599 | 7.2:+8151600 | None:intergenic |
| CTCTCTTTAATCCCTTTACT+AGG | 0.326943 | 7.2:-8152033 | MS.gene050306:CDS |
| CAAGTTAGATCTGACACTAA+TGG | 0.329403 | 7.2:-8151588 | MS.gene050306:CDS |
| ATCCAGCCAATAAAGTCTTT+TGG | 0.339525 | 7.2:+8151332 | None:intergenic |
| AGAACTCTCTGCTAAGCATT+TGG | 0.351257 | 7.2:+8151706 | None:intergenic |
| TTGACCCACTTGAACGTACT+TGG | 0.354769 | 7.2:-8151751 | MS.gene050306:CDS |
| TTCCATAGAAACGGACTTTA+GGG | 0.361226 | 7.2:+8151459 | None:intergenic |
| AACATTCTTCGCATGATGTC+GGG | 0.375799 | 7.2:-8152963 | None:intergenic |
| TCTTGTCTCGGTTGGATGTT+GGG | 0.383783 | 7.2:-8152312 | MS.gene050306:CDS |
| GCTATAAGCACGTGTTATCC+TGG | 0.393896 | 7.2:-8151893 | MS.gene050306:CDS |
| TCTTGTGCTCCAACATCAAC+TGG | 0.401697 | 7.2:-8151959 | MS.gene050306:CDS |
| GAACTCTCTGCTAAGCATTT+GGG | 0.407425 | 7.2:+8151707 | None:intergenic |
| ATGGTTGGTTATTGCTAAAC+CGG | 0.409750 | 7.2:-8152093 | MS.gene050306:CDS |
| GGAATTGTTCTTGTCTCGGT+TGG | 0.421431 | 7.2:-8152320 | MS.gene050306:CDS |
| TTCCCTTGAGTTGCCAGAGT+TGG | 0.426018 | 7.2:-8152143 | MS.gene050306:CDS |
| AACAATTCCAAGACTTCAGC+AGG | 0.429634 | 7.2:+8152334 | None:intergenic |
| TTCTTGTCTCGGTTGGATGT+TGG | 0.436225 | 7.2:-8152313 | MS.gene050306:CDS |
| TCTTGGAATTGTTCTTGTCT+CGG | 0.438217 | 7.2:-8152324 | MS.gene050306:CDS |
| TATTGCTAAACCGGCAGGAC+TGG | 0.447316 | 7.2:-8152084 | MS.gene050306:CDS |
| ACAATTTGGAGCTGCAAACA+TGG | 0.451046 | 7.2:-8152366 | MS.gene050306:CDS |
| TTCGCATGATGTCGGGGAAA+AGG | 0.455236 | 7.2:-8152956 | None:intergenic |
| CTCTGGCAACTCAAGGGAAT+AGG | 0.460842 | 7.2:+8152147 | None:intergenic |
| CGATCTCCCTGCTGAAGTCT+TGG | 0.469551 | 7.2:-8152341 | MS.gene050306:CDS |
| AAAGAGGTGAGAACACTAGA+TGG | 0.470190 | 7.2:-8151560 | MS.gene050306:CDS |
| GAATAGGTCTTACGCTGCAC+AGG | 0.470767 | 7.2:+8152163 | None:intergenic |
| TCTCTTTAATCCCTTTACTA+GGG | 0.471216 | 7.2:-8152032 | MS.gene050306:CDS |
| TGATATGTCCTGTCAAACTT+TGG | 0.477303 | 7.2:+8151995 | None:intergenic |
| AATACATAAGCCAAGGTGAT+TGG | 0.482476 | 7.2:+8152221 | None:intergenic |
| CTTGAGTTGCCAGAGTTGGA+TGG | 0.483726 | 7.2:-8152139 | MS.gene050306:CDS |
| CCTGTCACGACACTGCTCAC+TGG | 0.484710 | 7.2:+8151394 | None:intergenic |
| GTGATCAGATCCCTAGTAAA+GGG | 0.491655 | 7.2:+8152022 | None:intergenic |
| CTGTCACGACACTGCTCACT+GGG | 0.495007 | 7.2:+8151395 | None:intergenic |
| CACCAAAAGACTTTATTGGC+TGG | 0.495682 | 7.2:-8151334 | MS.gene050306:CDS |
| CTGAGCGACAGAGGTTGGCT+AGG | 0.495793 | 7.2:-8151779 | MS.gene050306:CDS |
| TGAGCGACAGAGGTTGGCTA+GGG | 0.496901 | 7.2:-8151778 | MS.gene050306:CDS |
| CCAACCTCCGCCAGTCCTGC+CGG | 0.497826 | 7.2:+8152074 | None:intergenic |
| CCAGTGAGCAGTGTCGTGAC+AGG | 0.497864 | 7.2:-8151394 | MS.gene050306:CDS |
| CGTGTTTGCTATACAAAAGA+TGG | 0.502296 | 7.2:-8152112 | MS.gene050306:CDS |
| CTATAAGCACGTGTTATCCT+GGG | 0.505414 | 7.2:-8151892 | MS.gene050306:CDS |
| CAGGACTGGCGGAGGTTGGA+CGG | 0.511557 | 7.2:-8152070 | MS.gene050306:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 7.2:-8152276 | MS.gene050306:CDS |
| CCGGCAGGACTGGCGGAGGT+TGG | 0.523905 | 7.2:-8152074 | MS.gene050306:CDS |
| ATTGTCTGAGCGACAGAGGT+TGG | 0.524197 | 7.2:-8151784 | MS.gene050306:CDS |
| CAAGACTTCAGCAGGGAGAT+CGG | 0.525981 | 7.2:+8152342 | None:intergenic |
| CATTCTAGGACTTACGTCAC+TGG | 0.528125 | 7.2:-8151506 | MS.gene050306:CDS |
| TTGGTTATTGCTAAACCGGC+AGG | 0.529301 | 7.2:-8152089 | MS.gene050306:CDS |
| CGTGATCAGATCCCTAGTAA+AGG | 0.536285 | 7.2:+8152021 | None:intergenic |
| TGATGTTGGAGCACAAGAGA+AGG | 0.538476 | 7.2:+8151964 | None:intergenic |
| TCACGCTGCCAAAGTTTGAC+AGG | 0.539518 | 7.2:-8152003 | MS.gene050306:CDS |
| GTCACTGGAATAATGAGAAA+CGG | 0.542182 | 7.2:-8151491 | MS.gene050306:CDS |
| TAGATCTGACACTAATGGAA+TGG | 0.542919 | 7.2:-8151583 | MS.gene050306:CDS |
| TCTGCTAAGCATTTGGGCGG+AGG | 0.544418 | 7.2:+8151713 | None:intergenic |
| CAACATTCTTCGCATGATGT+CGG | 0.545714 | 7.2:-8152964 | None:intergenic |
| TTTGCTATACAAAAGATGGT+TGG | 0.546454 | 7.2:-8152108 | MS.gene050306:CDS |
| CATCCAACTCTGGCAACTCA+AGG | 0.553068 | 7.2:+8152140 | None:intergenic |
| TTTGGGAAATACATAAGCCA+AGG | 0.561817 | 7.2:+8152214 | None:intergenic |
| GACACTAATGGAATGGAAAG+AGG | 0.564517 | 7.2:-8151576 | MS.gene050306:CDS |
| TGCTAAACCGGCAGGACTGG+CGG | 0.569550 | 7.2:-8152081 | MS.gene050306:CDS |
| CAATAGAAGAGCTGCTGCTG+AGG | 0.574535 | 7.2:-8152398 | MS.gene050306:CDS |
| ACACGACATCCATCCAACTC+TGG | 0.576746 | 7.2:+8152130 | None:intergenic |
| ATAACACATCCAGTTGATGT+TGG | 0.578438 | 7.2:+8151950 | None:intergenic |
| CTTGTCTCGGTTGGATGTTG+GGG | 0.581584 | 7.2:-8152311 | MS.gene050306:CDS |
| ATCCAACTCTGGCAACTCAA+GGG | 0.590798 | 7.2:+8152141 | None:intergenic |
| TAAACCGGCAGGACTGGCGG+AGG | 0.593956 | 7.2:-8152078 | MS.gene050306:CDS |
| ACAGTCCAAGTACGTTCAAG+TGG | 0.603382 | 7.2:+8151746 | None:intergenic |
| CAATTTGGAGCTGCAAACAT+GGG | 0.606485 | 7.2:-8152365 | MS.gene050306:CDS |
| GCTCACTGGGATGATATCTA+CGG | 0.610400 | 7.2:+8151408 | None:intergenic |
| GTCGACTACACGTAAAGAAG+TGG | 0.612484 | 7.2:+8152243 | None:intergenic |
| ACATTCTTCGCATGATGTCG+GGG | 0.620719 | 7.2:-8152962 | None:intergenic |
| CAGTGAGCAGTGTCGTGACA+GGG | 0.621223 | 7.2:-8151393 | MS.gene050306:CDS |
| TCTTGCAAACAGCTGAAGCA+CGG | 0.621405 | 7.2:+8152281 | None:intergenic |
| AATAGGTCTTACGCTGCACA+GGG | 0.638547 | 7.2:+8152164 | None:intergenic |
| CTCTCTGCTAAGCATTTGGG+CGG | 0.648219 | 7.2:+8151710 | None:intergenic |
| TTTGTAGTTTATATATGTTG+TGG | 0.650518 | 7.2:-8151629 | MS.gene050306:CDS |
| AGTTTATATATGTTGTGGTG+AGG | 0.651124 | 7.2:-8151624 | MS.gene050306:CDS |
| GAGCGACAGAGGTTGGCTAG+GGG | 0.671202 | 7.2:-8151777 | MS.gene050306:CDS |
| CAGTCCAAGTACGTTCAAGT+GGG | 0.682692 | 7.2:+8151747 | None:intergenic |
| GACCACTGTTAATTATGACG+CGG | 0.704466 | 7.2:-8151858 | MS.gene050306:CDS |
| TATAAGCACGTGTTATCCTG+GGG | 0.707016 | 7.2:-8151891 | MS.gene050306:CDS |
| ACAATTCCAAGACTTCAGCA+GGG | 0.713188 | 7.2:+8152335 | None:intergenic |
| GTGTAGTCGACCAATCACCT+TGG | 0.718766 | 7.2:-8152231 | MS.gene050306:CDS |
| TACCGCGTCATAATTAACAG+TGG | 0.732690 | 7.2:+8151856 | None:intergenic |
| AAATTTATGATAGAGCACAA+AGG | 0.741593 | 7.2:-8151659 | MS.gene050306:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATTATTATTATTGCTA+GGG | - | chr7.2:8151403-8151422 | MS.gene050306:CDS | 15.0% |
| !! | AGCAATAATAATAATATGTA+TGG | + | chr7.2:8151402-8151421 | None:intergenic | 15.0% |
| !! | CAATAATAATAATATGTATG+GGG | + | chr7.2:8151400-8151419 | None:intergenic | 15.0% |
| !! | GCAATAATAATAATATGTAT+GGG | + | chr7.2:8151401-8151420 | None:intergenic | 15.0% |
| !! | TACATATTATTATTATTGCT+AGG | - | chr7.2:8151402-8151421 | MS.gene050306:CDS | 15.0% |
| !! | TTTAGATTGATAAACATATT+TGG | - | chr7.2:8151725-8151744 | MS.gene050306:CDS | 15.0% |
| !!! | AATTTTGTTCAACAATTAAT+TGG | - | chr7.2:8151447-8151466 | MS.gene050306:CDS | 15.0% |
| !! | AGATCTAACTTGAAAATTAT+TGG | + | chr7.2:8152683-8152702 | None:intergenic | 20.0% |
| !! | GATCTAACTTGAAAATTATT+GGG | + | chr7.2:8152682-8152701 | None:intergenic | 20.0% |
| !! | GTTTCATCTATATTTCATAT+TGG | - | chr7.2:8151576-8151595 | MS.gene050306:CDS | 20.0% |
| !! | TATGATTTCTATATCCAATT+CGG | - | chr7.2:8151540-8151559 | MS.gene050306:CDS | 20.0% |
| !! | TTTGTAGTTTATATATGTTG+TGG | - | chr7.2:8152650-8152669 | MS.gene050306:intron | 20.0% |
| !!! | TCAATTTTTTGGCTTAATAA+TGG | - | chr7.2:8151481-8151500 | MS.gene050306:CDS | 20.0% |
| ! | AAATTTATGATAGAGCACAA+AGG | - | chr7.2:8152620-8152639 | MS.gene050306:intron | 25.0% |
| ! | AGATTGATAAACATATTTGG+TGG | - | chr7.2:8151728-8151747 | MS.gene050306:CDS | 25.0% |
| ! | ATAATAATATGTATGGGGTT+AGG | + | chr7.2:8151395-8151414 | None:intergenic | 25.0% |
| ! | CATGAAAAATTTAACCGAAT+TGG | + | chr7.2:8151557-8151576 | None:intergenic | 25.0% |
| ! | CTTATGTATTTCCCAAAAAA+GGG | - | chr7.2:8152071-8152090 | MS.gene050306:CDS | 25.0% |
| ! | GATTGATAAACATATTTGGT+GGG | - | chr7.2:8151729-8151748 | MS.gene050306:CDS | 25.0% |
| ! | TAGTTAATTCACAATAAAGC+TGG | + | chr7.2:8151613-8151632 | None:intergenic | 25.0% |
| !! | ATAAGCTTGTCTTTTCTAAT+GGG | - | chr7.2:8152465-8152484 | MS.gene050306:intron | 25.0% |
| !! | ATATTAATTTTCAGACGTGT+TGG | - | chr7.2:8152350-8152369 | MS.gene050306:CDS | 25.0% |
| !!! | CATAACAATTACCCTTTTTT+GGG | + | chr7.2:8152085-8152104 | None:intergenic | 25.0% |
| !!! | CATTTTTAAGTTGATGATTG+TGG | - | chr7.2:8151634-8151653 | MS.gene050306:CDS | 25.0% |
| !!! | TCATAACAATTACCCTTTTT+TGG | + | chr7.2:8152086-8152105 | None:intergenic | 25.0% |
| !!! | TTGCACTAACTTCAATTTTT+TGG | - | chr7.2:8151470-8151489 | MS.gene050306:CDS | 25.0% |
| AAAAAATGAAGTTAGCTAGC+AGG | + | chr7.2:8151796-8151815 | None:intergenic | 30.0% | |
| AGTTTATATATGTTGTGGTG+AGG | - | chr7.2:8152655-8152674 | MS.gene050306:intron | 30.0% | |
| GCTTATGTATTTCCCAAAAA+AGG | - | chr7.2:8152070-8152089 | MS.gene050306:CDS | 30.0% | |
| TCTCTTTAATCCCTTTACTA+GGG | - | chr7.2:8152247-8152266 | MS.gene050306:CDS | 30.0% | |
| TGAGGTAAAAAGCAACAATT+TGG | - | chr7.2:8151899-8151918 | MS.gene050306:CDS | 30.0% | |
| TTGTTGAACAAAATTGAGAG+TGG | + | chr7.2:8151442-8151461 | None:intergenic | 30.0% | |
| ! | GATAAGCTTGTCTTTTCTAA+TGG | - | chr7.2:8152464-8152483 | MS.gene050306:intron | 30.0% |
| ! | TTTGCTATACAAAAGATGGT+TGG | - | chr7.2:8152171-8152190 | MS.gene050306:CDS | 30.0% |
| !! | CAAATACTTTTGAGAACTTC+TGG | - | chr7.2:8152915-8152934 | MS.gene050306:intron | 30.0% |
| !! | CAGAAGTTCTCAAAAGTATT+TGG | + | chr7.2:8152917-8152936 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTCATCTCATTCT+AGG | - | chr7.2:8152759-8152778 | MS.gene050306:intron | 30.0% |
| AATACATAAGCCAAGGTGAT+TGG | + | chr7.2:8152061-8152080 | None:intergenic | 35.0% | |
| AATATGTATGGGGTTAGGTT+AGG | + | chr7.2:8151390-8151409 | None:intergenic | 35.0% | |
| AGTAAACAGAACAGAAACAG+TGG | + | chr7.2:8151691-8151710 | None:intergenic | 35.0% | |
| ATATGTATGGGGTTAGGTTA+GGG | + | chr7.2:8151389-8151408 | None:intergenic | 35.0% | |
| ATTCACAATAAAGCTGGTCA+TGG | + | chr7.2:8151607-8151626 | None:intergenic | 35.0% | |
| CAAGTTAGATCTGACACTAA+TGG | - | chr7.2:8152691-8152710 | MS.gene050306:intron | 35.0% | |
| CTCTCTTTAATCCCTTTACT+AGG | - | chr7.2:8152246-8152265 | MS.gene050306:CDS | 35.0% | |
| GAACCACCAAAAGACTTTAT+TGG | - | chr7.2:8152941-8152960 | MS.gene050306:CDS | 35.0% | |
| GTAAACAGAACAGAAACAGT+GGG | + | chr7.2:8151690-8151709 | None:intergenic | 35.0% | |
| GTCACTGGAATAATGAGAAA+CGG | - | chr7.2:8152788-8152807 | MS.gene050306:intron | 35.0% | |
| TAGATCTGACACTAATGGAA+TGG | - | chr7.2:8152696-8152715 | MS.gene050306:intron | 35.0% | |
| TCTTGGAATTGTTCTTGTCT+CGG | - | chr7.2:8151955-8151974 | MS.gene050306:CDS | 35.0% | |
| TGATATGTCCTGTCAAACTT+TGG | + | chr7.2:8152287-8152306 | None:intergenic | 35.0% | |
| TTTGGGAAATACATAAGCCA+AGG | + | chr7.2:8152068-8152087 | None:intergenic | 35.0% | |
| ! | ATAACACATCCAGTTGATGT+TGG | + | chr7.2:8152332-8152351 | None:intergenic | 35.0% |
| ! | ATCCAGCCAATAAAGTCTTT+TGG | + | chr7.2:8152950-8152969 | None:intergenic | 35.0% |
| ! | ATGGTTGGTTATTGCTAAAC+CGG | - | chr7.2:8152186-8152205 | MS.gene050306:CDS | 35.0% |
| ! | GATAAACATATTTGGTGGGA+TGG | - | chr7.2:8151733-8151752 | MS.gene050306:CDS | 35.0% |
| ! | TGCAACGTTTTCCATAGAAA+CGG | + | chr7.2:8152832-8152851 | None:intergenic | 35.0% |
| ! | TTCCATAGAAACGGACTTTA+GGG | + | chr7.2:8152823-8152842 | None:intergenic | 35.0% |
| ! | TTTCCATAGAAACGGACTTT+AGG | + | chr7.2:8152824-8152843 | None:intergenic | 35.0% |
| !! | CGTGTTTGCTATACAAAAGA+TGG | - | chr7.2:8152167-8152186 | MS.gene050306:CDS | 35.0% |
| AAAGAGGTGAGAACACTAGA+TGG | - | chr7.2:8152719-8152738 | MS.gene050306:intron | 40.0% | |
| AACAATTCCAAGACTTCAGC+AGG | + | chr7.2:8151948-8151967 | None:intergenic | 40.0% | |
| ACAATTCCAAGACTTCAGCA+GGG | + | chr7.2:8151947-8151966 | None:intergenic | 40.0% | |
| AGAACTCTCTGCTAAGCATT+TGG | + | chr7.2:8152576-8152595 | None:intergenic | 40.0% | |
| AGAGTTCTACTGCCAAAAAC+TGG | - | chr7.2:8152588-8152607 | MS.gene050306:intron | 40.0% | |
| CACCAAAAGACTTTATTGGC+TGG | - | chr7.2:8152945-8152964 | MS.gene050306:CDS | 40.0% | |
| CTATAAGCACGTGTTATCCT+GGG | - | chr7.2:8152387-8152406 | MS.gene050306:CDS | 40.0% | |
| GAACTCTCTGCTAAGCATTT+GGG | + | chr7.2:8152575-8152594 | None:intergenic | 40.0% | |
| GACACTAATGGAATGGAAAG+AGG | - | chr7.2:8152703-8152722 | MS.gene050306:intron | 40.0% | |
| GACCACTGTTAATTATGACG+CGG | - | chr7.2:8152421-8152440 | MS.gene050306:intron | 40.0% | |
| GTGATCAGATCCCTAGTAAA+GGG | + | chr7.2:8152260-8152279 | None:intergenic | 40.0% | |
| GTTATCCTGGGGAAAAAGAA+TGG | - | chr7.2:8152399-8152418 | MS.gene050306:CDS | 40.0% | |
| TACCGCGTCATAATTAACAG+TGG | + | chr7.2:8152426-8152445 | None:intergenic | 40.0% | |
| TATAAGCACGTGTTATCCTG+GGG | - | chr7.2:8152388-8152407 | MS.gene050306:CDS | 40.0% | |
| TTCCCTAAAGTCCGTTTCTA+TGG | - | chr7.2:8152818-8152837 | MS.gene050306:intron | 40.0% | |
| ! | ACAATTTGGAGCTGCAAACA+TGG | - | chr7.2:8151913-8151932 | MS.gene050306:CDS | 40.0% |
| ! | CAATTTGGAGCTGCAAACAT+GGG | - | chr7.2:8151914-8151933 | MS.gene050306:CDS | 40.0% |
| ! | CAGCCAATAAAGTCTTTTGG+TGG | + | chr7.2:8152947-8152966 | None:intergenic | 40.0% |
| ! | TTTTATTGTCTGAGCGACAG+AGG | - | chr7.2:8152491-8152510 | MS.gene050306:intron | 40.0% |
| AATAGGTCTTACGCTGCACA+GGG | + | chr7.2:8152118-8152137 | None:intergenic | 45.0% | |
| ACAGTCCAAGTACGTTCAAG+TGG | + | chr7.2:8152536-8152555 | None:intergenic | 45.0% | |
| ACTGCCAAAAACTGGTCGAA+GGG | - | chr7.2:8152596-8152615 | MS.gene050306:intron | 45.0% | |
| ATCCAACTCTGGCAACTCAA+GGG | + | chr7.2:8152141-8152160 | None:intergenic | 45.0% | |
| CAGTCCAAGTACGTTCAAGT+GGG | + | chr7.2:8152535-8152554 | None:intergenic | 45.0% | |
| CGTGATCAGATCCCTAGTAA+AGG | + | chr7.2:8152261-8152280 | None:intergenic | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | - | chr7.2:8152003-8152022 | MS.gene050306:CDS | 45.0% | |
| GCTATAAGCACGTGTTATCC+TGG | - | chr7.2:8152386-8152405 | MS.gene050306:CDS | 45.0% | |
| GCTCACTGGGATGATATCTA+CGG | + | chr7.2:8152874-8152893 | None:intergenic | 45.0% | |
| GGAATTGTTCTTGTCTCGGT+TGG | - | chr7.2:8151959-8151978 | MS.gene050306:CDS | 45.0% | |
| GTCGACTACACGTAAAGAAG+TGG | + | chr7.2:8152039-8152058 | None:intergenic | 45.0% | |
| TACTGCCAAAAACTGGTCGA+AGG | - | chr7.2:8152595-8152614 | MS.gene050306:intron | 45.0% | |
| TCTTGCAAACAGCTGAAGCA+CGG | + | chr7.2:8152001-8152020 | None:intergenic | 45.0% | |
| TCTTGTCTCGGTTGGATGTT+GGG | - | chr7.2:8151967-8151986 | MS.gene050306:CDS | 45.0% | |
| TCTTGTGCTCCAACATCAAC+TGG | - | chr7.2:8152320-8152339 | MS.gene050306:CDS | 45.0% | |
| TGATGTTGGAGCACAAGAGA+AGG | + | chr7.2:8152318-8152337 | None:intergenic | 45.0% | |
| TTCTTGTCTCGGTTGGATGT+TGG | - | chr7.2:8151966-8151985 | MS.gene050306:CDS | 45.0% | |
| TTGACCCACTTGAACGTACT+TGG | - | chr7.2:8152528-8152547 | MS.gene050306:intron | 45.0% | |
| TTGGTTATTGCTAAACCGGC+AGG | - | chr7.2:8152190-8152209 | MS.gene050306:CDS | 45.0% | |
| ! | TTTCCCCTTCGACCAGTTTT+TGG | + | chr7.2:8152603-8152622 | None:intergenic | 45.0% |
| !! | CATTCTAGGACTTACGTCAC+TGG | - | chr7.2:8152773-8152792 | MS.gene050306:intron | 45.0% |
| ACACGACATCCATCCAACTC+TGG | + | chr7.2:8152152-8152171 | None:intergenic | 50.0% | |
| ATTGTCTGAGCGACAGAGGT+TGG | - | chr7.2:8152495-8152514 | MS.gene050306:intron | 50.0% | |
| CAAGACTTCAGCAGGGAGAT+CGG | + | chr7.2:8151940-8151959 | None:intergenic | 50.0% | |
| CAATAGAAGAGCTGCTGCTG+AGG | - | chr7.2:8151881-8151900 | MS.gene050306:CDS | 50.0% | |
| CATCCAACTCTGGCAACTCA+AGG | + | chr7.2:8152142-8152161 | None:intergenic | 50.0% | |
| CTCTCTGCTAAGCATTTGGG+CGG | + | chr7.2:8152572-8152591 | None:intergenic | 50.0% | |
| CTCTGGCAACTCAAGGGAAT+AGG | + | chr7.2:8152135-8152154 | None:intergenic | 50.0% | |
| CTGCCAAAAACTGGTCGAAG+GGG | - | chr7.2:8152597-8152616 | MS.gene050306:intron | 50.0% | |
| CTTGTCTCGGTTGGATGTTG+GGG | - | chr7.2:8151968-8151987 | MS.gene050306:CDS | 50.0% | |
| GAATAGGTCTTACGCTGCAC+AGG | + | chr7.2:8152119-8152138 | None:intergenic | 50.0% | |
| GTGTAGTCGACCAATCACCT+TGG | - | chr7.2:8152048-8152067 | MS.gene050306:CDS | 50.0% | |
| TATTGCTAAACCGGCAGGAC+TGG | - | chr7.2:8152195-8152214 | MS.gene050306:CDS | 50.0% | |
| TCACGCTGCCAAAGTTTGAC+AGG | - | chr7.2:8152276-8152295 | MS.gene050306:CDS | 50.0% | |
| ! | CTTGAGTTGCCAGAGTTGGA+TGG | - | chr7.2:8152140-8152159 | MS.gene050306:CDS | 50.0% |
| ! | GTGGTCCATTCTTTTTCCCC+AGG | + | chr7.2:8152407-8152426 | None:intergenic | 50.0% |
| ! | TTCCCTTGAGTTGCCAGAGT+TGG | - | chr7.2:8152136-8152155 | MS.gene050306:CDS | 50.0% |
| CAGTGAGCAGTGTCGTGACA+GGG | - | chr7.2:8152886-8152905 | MS.gene050306:intron | 55.0% | |
| CGATCTCCCTGCTGAAGTCT+TGG | - | chr7.2:8151938-8151957 | MS.gene050306:CDS | 55.0% | |
| CTGTCACGACACTGCTCACT+GGG | + | chr7.2:8152887-8152906 | None:intergenic | 55.0% | |
| TCTGCTAAGCATTTGGGCGG+AGG | + | chr7.2:8152569-8152588 | None:intergenic | 55.0% | |
| ! | TGAGCGACAGAGGTTGGCTA+GGG | - | chr7.2:8152501-8152520 | MS.gene050306:intron | 55.0% |
| CCAGTGAGCAGTGTCGTGAC+AGG | - | chr7.2:8152885-8152904 | MS.gene050306:intron | 60.0% | |
| CCTGTCACGACACTGCTCAC+TGG | + | chr7.2:8152888-8152907 | None:intergenic | 60.0% | |
| TGCTAAACCGGCAGGACTGG+CGG | - | chr7.2:8152198-8152217 | MS.gene050306:CDS | 60.0% | |
| ! | CTGAGCGACAGAGGTTGGCT+AGG | - | chr7.2:8152500-8152519 | MS.gene050306:intron | 60.0% |
| ! | GAGCGACAGAGGTTGGCTAG+GGG | - | chr7.2:8152502-8152521 | MS.gene050306:intron | 60.0% |
| ! | CAGGACTGGCGGAGGTTGGA+CGG | - | chr7.2:8152209-8152228 | MS.gene050306:CDS | 65.0% |
| ! | TAAACCGGCAGGACTGGCGG+AGG | - | chr7.2:8152201-8152220 | MS.gene050306:CDS | 65.0% |
| CCAACCTCCGCCAGTCCTGC+CGG | + | chr7.2:8152208-8152227 | None:intergenic | 70.0% | |
| ! | CCGGCAGGACTGGCGGAGGT+TGG | - | chr7.2:8152205-8152224 | MS.gene050306:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 8151328 | 8152973 | 8151328 | ID=MS.gene050306 |
| chr7.2 | mRNA | 8151328 | 8152973 | 8151328 | ID=MS.gene050306.t1;Parent=MS.gene050306 |
| chr7.2 | exon | 8152936 | 8152973 | 8152936 | ID=MS.gene050306.t1.exon1;Parent=MS.gene050306.t1 |
| chr7.2 | CDS | 8152936 | 8152973 | 8152936 | ID=cds.MS.gene050306.t1;Parent=MS.gene050306.t1 |
| chr7.2 | exon | 8151328 | 8152429 | 8151328 | ID=MS.gene050306.t1.exon2;Parent=MS.gene050306.t1 |
| chr7.2 | CDS | 8151328 | 8152429 | 8151328 | ID=cds.MS.gene050306.t1;Parent=MS.gene050306.t1 |
| Gene Sequence |
| Protein sequence |
