Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35072.t1 | XP_013457254.1 | 77.9 | 394 | 44 | 3 | 1 | 351 | 1 | 394 | 1.80E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35072.t1 | A0A072UZK1 | 77.9 | 394 | 44 | 3 | 1 | 351 | 1 | 394 | 1.3e-138 | 502.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050306 | MS.gene35072 | 0.802773 | 4.79E-49 | -1.69E-46 |
| MS.gene050384 | MS.gene35072 | 0.80127 | 9.74E-49 | -1.69E-46 |
| MS.gene057392 | MS.gene35072 | 0.804324 | 2.28E-49 | -1.69E-46 |
| MS.gene058632 | MS.gene35072 | 0.891078 | 5.51E-74 | -1.69E-46 |
| MS.gene058634 | MS.gene35072 | 0.988555 | 1.76E-174 | -1.69E-46 |
| MS.gene05978 | MS.gene35072 | 0.802982 | 4.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35072.t1 | MTR_4g094375 | 76.250 | 400 | 40 | 5 | 1 | 351 | 1 | 394 | 0.0 | 524 |
| MS.gene35072.t1 | MTR_1g098700 | 43.382 | 408 | 165 | 6 | 1 | 347 | 1 | 403 | 1.05e-102 | 308 |
| MS.gene35072.t1 | MTR_6g037000 | 45.576 | 373 | 151 | 8 | 18 | 343 | 9 | 376 | 1.24e-93 | 284 |
| MS.gene35072.t1 | MTR_6g036920 | 45.187 | 374 | 153 | 8 | 18 | 344 | 9 | 377 | 1.27e-89 | 274 |
| MS.gene35072.t1 | MTR_6g037010 | 42.540 | 315 | 161 | 9 | 44 | 343 | 9 | 318 | 8.18e-72 | 227 |
| MS.gene35072.t1 | MTR_6g037060 | 53.659 | 205 | 84 | 5 | 18 | 216 | 9 | 208 | 1.01e-65 | 207 |
| MS.gene35072.t1 | MTR_6g036980 | 53.642 | 151 | 65 | 2 | 44 | 190 | 9 | 158 | 2.23e-49 | 163 |
| MS.gene35072.t1 | MTR_8g098895 | 34.103 | 390 | 198 | 11 | 2 | 343 | 3 | 381 | 1.75e-48 | 168 |
| MS.gene35072.t1 | MTR_6g037070 | 49.438 | 89 | 45 | 0 | 257 | 345 | 44 | 132 | 1.83e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35072.t1 | AT1G18740 | 43.939 | 396 | 155 | 11 | 1 | 343 | 1 | 382 | 6.14e-95 | 288 |
| MS.gene35072.t1 | AT1G74450 | 43.781 | 402 | 157 | 10 | 1 | 344 | 1 | 391 | 5.27e-94 | 286 |
| MS.gene35072.t1 | AT1G43630 | 48.548 | 241 | 102 | 7 | 1 | 238 | 31 | 252 | 5.87e-68 | 219 |
| MS.gene35072.t1 | AT1G43630 | 53.750 | 80 | 36 | 1 | 266 | 344 | 328 | 407 | 1.32e-17 | 84.0 |
| MS.gene35072.t1 | AT1G63930 | 30.529 | 416 | 201 | 13 | 2 | 343 | 3 | 404 | 2.50e-51 | 176 |
| MS.gene35072.t1 | AT4G11300 | 32.031 | 384 | 202 | 10 | 2 | 343 | 3 | 369 | 6.08e-40 | 145 |
| MS.gene35072.t1 | AT4G23530 | 28.760 | 379 | 204 | 10 | 20 | 338 | 13 | 385 | 6.75e-31 | 121 |
Find 96 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGCGTCATAGATCTTT+TGG | 0.183195 | 4.4:-20264114 | MS.gene35072:CDS |
| AACGATCTGCAACACGCTTT+TGG | 0.237316 | 4.4:+20264514 | None:intergenic |
| CATTGACCGAAGGGCAGTTT+AGG | 0.321777 | 4.4:-20264206 | MS.gene35072:CDS |
| GAAATTGTGAGTTGTGCTTT+AGG | 0.338068 | 4.4:-20264243 | MS.gene35072:CDS |
| TTCGGCTATCAACTATCTTT+CGG | 0.358993 | 4.4:+20263549 | None:intergenic |
| TCAGCAAGCCGCTTGAGTTC+CGG | 0.359891 | 4.4:+20263753 | None:intergenic |
| TACTCCATGTAAATTGCTTC+GGG | 0.371358 | 4.4:+20263830 | None:intergenic |
| ATTACATGTTCTTCGGTCAA+TGG | 0.376136 | 4.4:+20263665 | None:intergenic |
| TGTTGCAGCTATTCCTTGTC+AGG | 0.377112 | 4.4:-20263881 | MS.gene35072:intron |
| CAGCTATTCCTTGTCAGGAC+AGG | 0.387126 | 4.4:-20263876 | MS.gene35072:CDS |
| ATGATTGATGAGAAAGAATC+AGG | 0.391748 | 4.4:-20264147 | MS.gene35072:CDS |
| CATGTAAATTGCTTCGGGAT+TGG | 0.393587 | 4.4:+20263835 | None:intergenic |
| CCGTATGTGGCAAAAGCAAC+TGG | 0.397968 | 4.4:-20264265 | MS.gene35072:CDS |
| GTACTCCATGTAAATTGCTT+CGG | 0.402466 | 4.4:+20263829 | None:intergenic |
| ACATGTAATGGAAGTTGAAC+AGG | 0.406076 | 4.4:-20263651 | MS.gene35072:CDS |
| TCTTTGACTCGTCCAGGATC+CGG | 0.408725 | 4.4:+20263785 | None:intergenic |
| AACTTCCATTACATGTTCTT+CGG | 0.411299 | 4.4:+20263658 | None:intergenic |
| ATGAATTGCTCTCGATTGAT+TGG | 0.412007 | 4.4:-20264464 | MS.gene35072:CDS |
| TCTTTCTCTTTGACTCGTCC+AGG | 0.429738 | 4.4:+20263779 | None:intergenic |
| TCCCTCACGTGGCGCTCCAA+TGG | 0.431848 | 4.4:+20263578 | None:intergenic |
| TCATTTGGTAGATCGTTGTT+TGG | 0.434869 | 4.4:-20264612 | MS.gene35072:CDS |
| TAGAGACGGGTTGGATCCAT+TGG | 0.436358 | 4.4:-20263594 | MS.gene35072:CDS |
| GGCATTCAAGATCACATTCA+TGG | 0.437225 | 4.4:-20264056 | MS.gene35072:CDS |
| TGCAATGGACTGTAGTTGCT+TGG | 0.438495 | 4.4:+20264008 | None:intergenic |
| CTAAACTGCCCTTCGGTCAA+TGG | 0.439271 | 4.4:+20264207 | None:intergenic |
| AGCTATTCCTTGTCAGGACA+GGG | 0.440449 | 4.4:-20263875 | MS.gene35072:CDS |
| CTTGGCACATCAAACTATAC+AGG | 0.441341 | 4.4:-20263509 | MS.gene35072:CDS |
| GACAGCCACCCGCCACTTGA+CGG | 0.443396 | 4.4:-20263711 | MS.gene35072:CDS |
| CAATCCCGAAGCAATTTACA+TGG | 0.448669 | 4.4:-20263834 | MS.gene35072:CDS |
| GGAAGTTGAACAGGATTTGA+AGG | 0.450865 | 4.4:-20263642 | MS.gene35072:CDS |
| ATCTTTATTATTCAACAGAA+TGG | 0.452561 | 4.4:+20264392 | None:intergenic |
| GCAGTTTAGGAGGGCGAGAA+AGG | 0.470954 | 4.4:-20264193 | MS.gene35072:CDS |
| GTTTGGTATGAGGCAGGACC+AGG | 0.472376 | 4.4:-20264595 | MS.gene35072:CDS |
| CGCCCTCCTAAACTGCCCTT+CGG | 0.482592 | 4.4:+20264200 | None:intergenic |
| GGGAATCAAGCCCCTCAGTT+CGG | 0.484799 | 4.4:+20263531 | None:intergenic |
| TTCAGATGTCATACGATCCA+TGG | 0.485962 | 4.4:+20264353 | None:intergenic |
| CTCACTTTACGACCGGATCC+TGG | 0.488384 | 4.4:-20263797 | MS.gene35072:CDS |
| ATCGTTGTTTGGTATGAGGC+AGG | 0.489438 | 4.4:-20264601 | MS.gene35072:CDS |
| CATGGAGTGTCTCTAGGTCC+TGG | 0.490607 | 4.4:-20264038 | MS.gene35072:CDS |
| TGTGGAAGCAAGTCATGAAC+CGG | 0.491995 | 4.4:-20264565 | MS.gene35072:CDS |
| TAGTTGCTTGGCTGCAGACC+AGG | 0.494155 | 4.4:+20264020 | None:intergenic |
| GTAGATCGTTGTTTGGTATG+AGG | 0.498240 | 4.4:-20264605 | MS.gene35072:CDS |
| ACTGAGGGGCTTGATTCCCT+TGG | 0.498467 | 4.4:-20263527 | MS.gene35072:CDS |
| TGACCGAAGGGCAGTTTAGG+AGG | 0.504334 | 4.4:-20264203 | MS.gene35072:CDS |
| ATTTGTAATGCGGGTCGAGA+TGG | 0.508247 | 4.4:-20264300 | MS.gene35072:CDS |
| ATTGACCGAAGAACATGTAA+TGG | 0.508630 | 4.4:-20263663 | MS.gene35072:CDS |
| GACGAAAACGATGAAGAAGA+AGG | 0.517630 | 4.4:+20264633 | None:intergenic |
| TTTGTAATGCGGGTCGAGAT+GGG | 0.522127 | 4.4:-20264299 | MS.gene35072:CDS |
| TACCAGGTCCGTCAAGTGGC+GGG | 0.523722 | 4.4:+20263703 | None:intergenic |
| GATTCGTGTAATCTAGAGCT+TGG | 0.523932 | 4.4:-20264543 | MS.gene35072:CDS |
| CGAGAGCAATTCATAATCAC+TGG | 0.525583 | 4.4:+20264473 | None:intergenic |
| CACCCGCCACTTGACGGACC+TGG | 0.528971 | 4.4:-20263705 | MS.gene35072:CDS |
| GCACTAGACATTTGTAATGC+GGG | 0.531981 | 4.4:-20264309 | MS.gene35072:CDS |
| TCCATTGGAGCGCCACGTGA+GGG | 0.533658 | 4.4:-20263579 | MS.gene35072:CDS |
| AGCTCTAGATTACACGAATC+CGG | 0.535203 | 4.4:+20264546 | None:intergenic |
| GAGGGCGAGAAAGGCACTGA+TGG | 0.537995 | 4.4:-20264184 | MS.gene35072:CDS |
| GAACTCAAGCGGCTTGCTGA+AGG | 0.542765 | 4.4:-20263750 | MS.gene35072:CDS |
| CACATTCATGGAGTGTCTCT+AGG | 0.544575 | 4.4:-20264044 | MS.gene35072:CDS |
| ATCTGAATTCATTGAGAGGT+CGG | 0.548398 | 4.4:-20264337 | MS.gene35072:CDS |
| CAGTTGCCTCACTTTACGAC+CGG | 0.549884 | 4.4:-20263804 | MS.gene35072:CDS |
| GGCACTGATGGATTTAGCAC+TGG | 0.556578 | 4.4:-20264172 | MS.gene35072:CDS |
| GAAACTGAGCAGAATCTACC+AGG | 0.561373 | 4.4:+20263687 | None:intergenic |
| ATAGTTGATAGCCGAACTGA+GGG | 0.570229 | 4.4:-20263542 | MS.gene35072:CDS |
| GACCGAAGGGCAGTTTAGGA+GGG | 0.570937 | 4.4:-20264202 | MS.gene35072:CDS |
| ACGAAAACGATGAAGAAGAA+GGG | 0.593698 | 4.4:+20264634 | None:intergenic |
| TTGCTTCCACAGAATGAACC+TGG | 0.596071 | 4.4:+20264577 | None:intergenic |
| GTTTGTGAGAATGCCTTCCA+CGG | 0.596488 | 4.4:-20264667 | None:intergenic |
| ATTGGAGCGCCACGTGAGGG+AGG | 0.597373 | 4.4:-20263576 | MS.gene35072:CDS |
| ATCCATTGGAGCGCCACGTG+AGG | 0.600405 | 4.4:-20263580 | MS.gene35072:CDS |
| TCAGATGTCATACGATCCAT+GGG | 0.603285 | 4.4:+20264354 | None:intergenic |
| CAGGTCCGTCAAGTGGCGGG+TGG | 0.603406 | 4.4:+20263706 | None:intergenic |
| GGCACTAGACATTTGTAATG+CGG | 0.604362 | 4.4:-20264310 | MS.gene35072:CDS |
| GCTATTCCTTGTCAGGACAG+GGG | 0.604712 | 4.4:-20263874 | MS.gene35072:CDS |
| CTACCAGGTCCGTCAAGTGG+CGG | 0.604768 | 4.4:+20263702 | None:intergenic |
| TTTAAACCCCTGTCCTGACA+AGG | 0.605039 | 4.4:+20263868 | None:intergenic |
| CTGTATAGTTTGATGTGCCA+AGG | 0.610377 | 4.4:+20263510 | None:intergenic |
| GCAGGACCAGGTTCATTCTG+TGG | 0.612935 | 4.4:-20264583 | MS.gene35072:CDS |
| ATAAGCGACCATTGACCGAA+GGG | 0.613621 | 4.4:-20264215 | MS.gene35072:CDS |
| TGGGAGGCATAACTCGAGCA+AGG | 0.614020 | 4.4:-20264094 | MS.gene35072:CDS |
| ATTCATTGAGAGGTCGGTCA+AGG | 0.614129 | 4.4:-20264331 | MS.gene35072:CDS |
| GAATGGCTCTGAATTCATCA+TGG | 0.614996 | 4.4:+20264409 | None:intergenic |
| TTCGGAACACCTCCCTCACG+TGG | 0.618299 | 4.4:+20263567 | None:intergenic |
| GGATTGAGACTATCCGTATG+TGG | 0.621190 | 4.4:-20264278 | MS.gene35072:CDS |
| TGTATAGTTTGATGTGCCAA+GGG | 0.623260 | 4.4:+20263511 | None:intergenic |
| TCAGTTATCGAAACCTCCCA+TGG | 0.624099 | 4.4:-20264370 | MS.gene35072:CDS |
| GAGTCAAAGAGAAAGAGCAC+CGG | 0.625781 | 4.4:-20263772 | MS.gene35072:CDS |
| CAGGATCCGGTCGTAAAGTG+AGG | 0.628978 | 4.4:+20263798 | None:intergenic |
| GATAGTTGATAGCCGAACTG+AGG | 0.632654 | 4.4:-20263543 | MS.gene35072:CDS |
| AATCTACCAGGTCCGTCAAG+TGG | 0.633418 | 4.4:+20263699 | None:intergenic |
| AAAGAGCACCGGAACTCAAG+CGG | 0.634659 | 4.4:-20263761 | MS.gene35072:CDS |
| GCAAGGATAGTCATTCGACT+AGG | 0.636083 | 4.4:-20264077 | MS.gene35072:CDS |
| AATAAGCGACCATTGACCGA+AGG | 0.639297 | 4.4:-20264216 | MS.gene35072:CDS |
| TTGGCACATCAAACTATACA+GGG | 0.662135 | 4.4:-20263508 | MS.gene35072:CDS |
| TGACATCTGAATTCATTGAG+AGG | 0.667207 | 4.4:-20264341 | MS.gene35072:CDS |
| GATGTCATACGATCCATGGG+AGG | 0.675731 | 4.4:+20264357 | None:intergenic |
| TAGTTGATAGCCGAACTGAG+GGG | 0.803639 | 4.4:-20263541 | MS.gene35072:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATTATTCAACAGAA+TGG | + | chr4.4:20263770-20263789 | None:intergenic | 20.0% |
| !!! | ATCGTTTTAATGAACTTTCT+GGG | - | chr4.4:20263662-20263681 | MS.gene35072:CDS | 25.0% |
| AACTTCCATTACATGTTCTT+CGG | + | chr4.4:20264504-20264523 | None:intergenic | 30.0% | |
| AATGAGATTGCTGCAAATAA+AGG | - | chr4.4:20264198-20264217 | MS.gene35072:CDS | 30.0% | |
| ATGAGATTGCTGCAAATAAA+GGG | - | chr4.4:20264199-20264218 | MS.gene35072:CDS | 30.0% | |
| ATGATTGATGAGAAAGAATC+AGG | - | chr4.4:20264012-20264031 | MS.gene35072:intron | 30.0% | |
| !! | GATCGTTTTAATGAACTTTC+TGG | - | chr4.4:20263661-20263680 | MS.gene35072:CDS | 30.0% |
| !! | TCGTTTTAATGAACTTTCTG+GGG | - | chr4.4:20263663-20263682 | MS.gene35072:CDS | 30.0% |
| !!! | GTATTCTCTTGTTTGTTTTG+TGG | - | chr4.4:20264250-20264269 | MS.gene35072:CDS | 30.0% |
| ACGAAAACGATGAAGAAGAA+GGG | + | chr4.4:20263528-20263547 | None:intergenic | 35.0% | |
| ATCTGAATTCATTGAGAGGT+CGG | - | chr4.4:20263822-20263841 | MS.gene35072:CDS | 35.0% | |
| ATGAATTGCTCTCGATTGAT+TGG | - | chr4.4:20263695-20263714 | MS.gene35072:CDS | 35.0% | |
| ATTACATGTTCTTCGGTCAA+TGG | + | chr4.4:20264497-20264516 | None:intergenic | 35.0% | |
| ATTGACCGAAGAACATGTAA+TGG | - | chr4.4:20264496-20264515 | MS.gene35072:CDS | 35.0% | |
| GAAATTGTGAGTTGTGCTTT+AGG | - | chr4.4:20263916-20263935 | MS.gene35072:intron | 35.0% | |
| GTACTCCATGTAAATTGCTT+CGG | + | chr4.4:20264333-20264352 | None:intergenic | 35.0% | |
| TACTCCATGTAAATTGCTTC+GGG | + | chr4.4:20264332-20264351 | None:intergenic | 35.0% | |
| TCATTTGGTAGATCGTTGTT+TGG | - | chr4.4:20263547-20263566 | MS.gene35072:CDS | 35.0% | |
| TGACATCTGAATTCATTGAG+AGG | - | chr4.4:20263818-20263837 | MS.gene35072:CDS | 35.0% | |
| TGTATAGTTTGATGTGCCAA+GGG | + | chr4.4:20264651-20264670 | None:intergenic | 35.0% | |
| TTCGGCTATCAACTATCTTT+CGG | + | chr4.4:20264613-20264632 | None:intergenic | 35.0% | |
| TTGGCACATCAAACTATACA+GGG | - | chr4.4:20264651-20264670 | MS.gene35072:CDS | 35.0% | |
| ! | ACATGTAATGGAAGTTGAAC+AGG | - | chr4.4:20264508-20264527 | MS.gene35072:CDS | 35.0% |
| ! | TCTTCATCGTTTTCGTCATT+TGG | - | chr4.4:20263532-20263551 | MS.gene35072:CDS | 35.0% |
| ACAAGGAATAGCTGCAACAA+GGG | + | chr4.4:20264277-20264296 | None:intergenic | 40.0% | |
| ACAGTCCATTGCAAATAACC+TGG | - | chr4.4:20264161-20264180 | MS.gene35072:CDS | 40.0% | |
| CAATCCCGAAGCAATTTACA+TGG | - | chr4.4:20264325-20264344 | MS.gene35072:CDS | 40.0% | |
| CATGTAAATTGCTTCGGGAT+TGG | + | chr4.4:20264327-20264346 | None:intergenic | 40.0% | |
| CGAGAGCAATTCATAATCAC+TGG | + | chr4.4:20263689-20263708 | None:intergenic | 40.0% | |
| CTGTATAGTTTGATGTGCCA+AGG | + | chr4.4:20264652-20264671 | None:intergenic | 40.0% | |
| CTTGGCACATCAAACTATAC+AGG | - | chr4.4:20264650-20264669 | MS.gene35072:CDS | 40.0% | |
| GACGAAAACGATGAAGAAGA+AGG | + | chr4.4:20263529-20263548 | None:intergenic | 40.0% | |
| GCACTAGACATTTGTAATGC+GGG | - | chr4.4:20263850-20263869 | MS.gene35072:CDS | 40.0% | |
| GGAAGTTGAACAGGATTTGA+AGG | - | chr4.4:20264517-20264536 | MS.gene35072:CDS | 40.0% | |
| GGCACTAGACATTTGTAATG+CGG | - | chr4.4:20263849-20263868 | MS.gene35072:CDS | 40.0% | |
| GGCATTCAAGATCACATTCA+TGG | - | chr4.4:20264103-20264122 | MS.gene35072:CDS | 40.0% | |
| GTAGATCGTTGTTTGGTATG+AGG | - | chr4.4:20263554-20263573 | MS.gene35072:CDS | 40.0% | |
| TCAGATGTCATACGATCCAT+GGG | + | chr4.4:20263808-20263827 | None:intergenic | 40.0% | |
| TGGAACCAGGTTATTTGCAA+TGG | + | chr4.4:20264169-20264188 | None:intergenic | 40.0% | |
| TTCAGATGTCATACGATCCA+TGG | + | chr4.4:20263809-20263828 | None:intergenic | 40.0% | |
| ! | CTCAGCGTCATAGATCTTTT+GGG | - | chr4.4:20264046-20264065 | MS.gene35072:CDS | 40.0% |
| ! | GATTCGTGTAATCTAGAGCT+TGG | - | chr4.4:20263616-20263635 | MS.gene35072:CDS | 40.0% |
| ! | TCTCAGCGTCATAGATCTTT+TGG | - | chr4.4:20264045-20264064 | MS.gene35072:CDS | 40.0% |
| !! | AGCTCTAGATTACACGAATC+CGG | + | chr4.4:20263616-20263635 | None:intergenic | 40.0% |
| !! | ATAGTTGATAGCCGAACTGA+GGG | - | chr4.4:20264617-20264636 | MS.gene35072:CDS | 40.0% |
| !! | CTTCAGAAGCTTTTAGAGAC+GGG | - | chr4.4:20264552-20264571 | MS.gene35072:CDS | 40.0% |
| !! | GAATGGCTCTGAATTCATCA+TGG | + | chr4.4:20263753-20263772 | None:intergenic | 40.0% |
| !! | GCTTCAGAAGCTTTTAGAGA+CGG | - | chr4.4:20264551-20264570 | MS.gene35072:CDS | 40.0% |
| AATAAGCGACCATTGACCGA+AGG | - | chr4.4:20263943-20263962 | MS.gene35072:intron | 45.0% | |
| AGCTATTCCTTGTCAGGACA+GGG | - | chr4.4:20264284-20264303 | MS.gene35072:CDS | 45.0% | |
| ATAAGCGACCATTGACCGAA+GGG | - | chr4.4:20263944-20263963 | MS.gene35072:intron | 45.0% | |
| ATCGTTGTTTGGTATGAGGC+AGG | - | chr4.4:20263558-20263577 | MS.gene35072:CDS | 45.0% | |
| ATTCATTGAGAGGTCGGTCA+AGG | - | chr4.4:20263828-20263847 | MS.gene35072:CDS | 45.0% | |
| ATTTGTAATGCGGGTCGAGA+TGG | - | chr4.4:20263859-20263878 | MS.gene35072:CDS | 45.0% | |
| GAAACTGAGCAGAATCTACC+AGG | + | chr4.4:20264475-20264494 | None:intergenic | 45.0% | |
| GACAAGGAATAGCTGCAACA+AGG | + | chr4.4:20264278-20264297 | None:intergenic | 45.0% | |
| GCAAGGATAGTCATTCGACT+AGG | - | chr4.4:20264082-20264101 | MS.gene35072:CDS | 45.0% | |
| GGATTGAGACTATCCGTATG+TGG | - | chr4.4:20263881-20263900 | MS.gene35072:intron | 45.0% | |
| TCAGTTATCGAAACCTCCCA+TGG | - | chr4.4:20263789-20263808 | MS.gene35072:CDS | 45.0% | |
| TGTGGAAGCAAGTCATGAAC+CGG | - | chr4.4:20263594-20263613 | MS.gene35072:CDS | 45.0% | |
| TGTTGCAGCTATTCCTTGTC+AGG | - | chr4.4:20264278-20264297 | MS.gene35072:CDS | 45.0% | |
| TTGCTTCCACAGAATGAACC+TGG | + | chr4.4:20263585-20263604 | None:intergenic | 45.0% | |
| TTTAAACCCCTGTCCTGACA+AGG | + | chr4.4:20264294-20264313 | None:intergenic | 45.0% | |
| TTTGTAATGCGGGTCGAGAT+GGG | - | chr4.4:20263860-20263879 | MS.gene35072:CDS | 45.0% | |
| ! | AACGATCTGCAACACGCTTT+TGG | + | chr4.4:20263648-20263667 | None:intergenic | 45.0% |
| ! | AGCGTCATAGATCTTTTGGG+AGG | - | chr4.4:20264049-20264068 | MS.gene35072:CDS | 45.0% |
| ! | CACATTCATGGAGTGTCTCT+AGG | - | chr4.4:20264115-20264134 | MS.gene35072:CDS | 45.0% |
| ! | GAGTCAAAGAGAAAGAGCAC+CGG | - | chr4.4:20264387-20264406 | MS.gene35072:CDS | 45.0% |
| ! | TCTTTCTCTTTGACTCGTCC+AGG | + | chr4.4:20264383-20264402 | None:intergenic | 45.0% |
| !! | AGAAGCTTTTAGAGACGGGT+TGG | - | chr4.4:20264556-20264575 | MS.gene35072:CDS | 45.0% |
| !! | GATAGTTGATAGCCGAACTG+AGG | - | chr4.4:20264616-20264635 | MS.gene35072:CDS | 45.0% |
| !! | TAGTTGATAGCCGAACTGAG+GGG | - | chr4.4:20264618-20264637 | MS.gene35072:CDS | 45.0% |
| !! | TGCAATGGACTGTAGTTGCT+TGG | + | chr4.4:20264154-20264173 | None:intergenic | 45.0% |
| !!! | CCAGTTGCTTTTGCCACATA+CGG | + | chr4.4:20263897-20263916 | None:intergenic | 45.0% |
| AATCTACCAGGTCCGTCAAG+TGG | + | chr4.4:20264463-20264482 | None:intergenic | 50.0% | |
| CAGCTATTCCTTGTCAGGAC+AGG | - | chr4.4:20264283-20264302 | MS.gene35072:CDS | 50.0% | |
| CAGTTGCCTCACTTTACGAC+CGG | - | chr4.4:20264355-20264374 | MS.gene35072:CDS | 50.0% | |
| CATTGACCGAAGGGCAGTTT+AGG | - | chr4.4:20263953-20263972 | MS.gene35072:intron | 50.0% | |
| CCGTATGTGGCAAAAGCAAC+TGG | - | chr4.4:20263894-20263913 | MS.gene35072:intron | 50.0% | |
| CTAAACTGCCCTTCGGTCAA+TGG | + | chr4.4:20263955-20263974 | None:intergenic | 50.0% | |
| GATGTCATACGATCCATGGG+AGG | + | chr4.4:20263805-20263824 | None:intergenic | 50.0% | |
| GCAATCTCATTTGCACGAGG+TGG | + | chr4.4:20264189-20264208 | None:intergenic | 50.0% | |
| GCAGCAATCTCATTTGCACG+AGG | + | chr4.4:20264192-20264211 | None:intergenic | 50.0% | |
| GCTATTCCTTGTCAGGACAG+GGG | - | chr4.4:20264285-20264304 | MS.gene35072:CDS | 50.0% | |
| ! | TCTTTGACTCGTCCAGGATC+CGG | + | chr4.4:20264377-20264396 | None:intergenic | 50.0% |
| !! | AAAGAGCACCGGAACTCAAG+CGG | - | chr4.4:20264398-20264417 | MS.gene35072:CDS | 50.0% |
| !! | AGAAGGGCTCTGATTTTCCG+TGG | + | chr4.4:20263512-20263531 | None:intergenic | 50.0% |
| !! | GGCACTGATGGATTTAGCAC+TGG | - | chr4.4:20263987-20264006 | MS.gene35072:intron | 50.0% |
| !! | TAGAGACGGGTTGGATCCAT+TGG | - | chr4.4:20264565-20264584 | MS.gene35072:CDS | 50.0% |
| ACTGAGGGGCTTGATTCCCT+TGG | - | chr4.4:20264632-20264651 | MS.gene35072:CDS | 55.0% | |
| CAGGATCCGGTCGTAAAGTG+AGG | + | chr4.4:20264364-20264383 | None:intergenic | 55.0% | |
| CATTTGCACGAGGTGGAACC+AGG | + | chr4.4:20264182-20264201 | None:intergenic | 55.0% | |
| CTCACTTTACGACCGGATCC+TGG | - | chr4.4:20264362-20264381 | MS.gene35072:CDS | 55.0% | |
| GACCGAAGGGCAGTTTAGGA+GGG | - | chr4.4:20263957-20263976 | MS.gene35072:intron | 55.0% | |
| GCAGGACCAGGTTCATTCTG+TGG | - | chr4.4:20263576-20263595 | MS.gene35072:CDS | 55.0% | |
| GCAGTTTAGGAGGGCGAGAA+AGG | - | chr4.4:20263966-20263985 | MS.gene35072:intron | 55.0% | |
| GGGAATCAAGCCCCTCAGTT+CGG | + | chr4.4:20264631-20264650 | None:intergenic | 55.0% | |
| GTTTGGTATGAGGCAGGACC+AGG | - | chr4.4:20263564-20263583 | MS.gene35072:CDS | 55.0% | |
| TAGTTGCTTGGCTGCAGACC+AGG | + | chr4.4:20264142-20264161 | None:intergenic | 55.0% | |
| TCAGCAAGCCGCTTGAGTTC+CGG | + | chr4.4:20264409-20264428 | None:intergenic | 55.0% | |
| TGACCGAAGGGCAGTTTAGG+AGG | - | chr4.4:20263956-20263975 | MS.gene35072:intron | 55.0% | |
| ! | CATGGAGTGTCTCTAGGTCC+TGG | - | chr4.4:20264121-20264140 | MS.gene35072:CDS | 55.0% |
| ! | TGGGAGGCATAACTCGAGCA+AGG | - | chr4.4:20264065-20264084 | MS.gene35072:CDS | 55.0% |
| !! | GAACTCAAGCGGCTTGCTGA+AGG | - | chr4.4:20264409-20264428 | MS.gene35072:CDS | 55.0% |
| !! | GGGCTCTGATTTTCCGTGGA+AGG | + | chr4.4:20263508-20263527 | None:intergenic | 55.0% |
| CGCCCTCCTAAACTGCCCTT+CGG | + | chr4.4:20263962-20263981 | None:intergenic | 60.0% | |
| CTACCAGGTCCGTCAAGTGG+CGG | + | chr4.4:20264460-20264479 | None:intergenic | 60.0% | |
| TACCAGGTCCGTCAAGTGGC+GGG | + | chr4.4:20264459-20264478 | None:intergenic | 60.0% | |
| TTCGGAACACCTCCCTCACG+TGG | + | chr4.4:20264595-20264614 | None:intergenic | 60.0% | |
| ! | ATCCATTGGAGCGCCACGTG+AGG | - | chr4.4:20264579-20264598 | MS.gene35072:CDS | 60.0% |
| ! | TCCATTGGAGCGCCACGTGA+GGG | - | chr4.4:20264580-20264599 | MS.gene35072:CDS | 60.0% |
| !! | GAGGGCGAGAAAGGCACTGA+TGG | - | chr4.4:20263975-20263994 | MS.gene35072:intron | 60.0% |
| GACAGCCACCCGCCACTTGA+CGG | - | chr4.4:20264448-20264467 | MS.gene35072:CDS | 65.0% | |
| TCCCTCACGTGGCGCTCCAA+TGG | + | chr4.4:20264584-20264603 | None:intergenic | 65.0% | |
| ! | ATTGGAGCGCCACGTGAGGG+AGG | - | chr4.4:20264583-20264602 | MS.gene35072:CDS | 65.0% |
| ! | CACCCGCCACTTGACGGACC+TGG | - | chr4.4:20264454-20264473 | MS.gene35072:CDS | 70.0% |
| ! | CAGGTCCGTCAAGTGGCGGG+TGG | + | chr4.4:20264456-20264475 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 20263502 | 20264679 | 20263502 | ID=MS.gene35072 |
| chr4.4 | mRNA | 20263502 | 20264679 | 20263502 | ID=MS.gene35072.t1;Parent=MS.gene35072 |
| chr4.4 | exon | 20264018 | 20264679 | 20264018 | ID=MS.gene35072.t1.exon1;Parent=MS.gene35072.t1 |
| chr4.4 | CDS | 20264018 | 20264679 | 20264018 | ID=cds.MS.gene35072.t1;Parent=MS.gene35072.t1 |
| chr4.4 | exon | 20263502 | 20263895 | 20263502 | ID=MS.gene35072.t1.exon2;Parent=MS.gene35072.t1 |
| chr4.4 | CDS | 20263502 | 20263895 | 20263502 | ID=cds.MS.gene35072.t1;Parent=MS.gene35072.t1 |
| Gene Sequence |
| Protein sequence |
