Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35193.t1 | XP_024637036.1 | 95.1 | 595 | 29 | 0 | 1 | 595 | 10 | 604 | 0.00E+00 | 1138.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35193.t1 | Q6AVI0 | 33.1 | 534 | 345 | 7 | 24 | 549 | 173 | 702 | 3.7e-87 | 323.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35193.t1 | A0A396IDQ4 | 95.1 | 595 | 29 | 0 | 1 | 595 | 10 | 604 | 0.0e+00 | 1138.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene35193 | 0.807611 | 4.64E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene35193 | 0.840746 | 7.22E-58 | -1.69E-46 |
| MS.gene050297 | MS.gene35193 | 0.817543 | 3.12E-52 | -1.69E-46 |
| MS.gene050310 | MS.gene35193 | 0.813718 | 2.22E-51 | -1.69E-46 |
| MS.gene050630 | MS.gene35193 | 0.801268 | 9.75E-49 | -1.69E-46 |
| MS.gene050648 | MS.gene35193 | 0.821122 | 4.77E-53 | -1.69E-46 |
| MS.gene05092 | MS.gene35193 | 0.809867 | 1.53E-50 | -1.69E-46 |
| MS.gene051263 | MS.gene35193 | 0.819134 | 1.36E-52 | -1.69E-46 |
| MS.gene051629 | MS.gene35193 | 0.802632 | 5.12E-49 | -1.69E-46 |
| MS.gene051671 | MS.gene35193 | 0.811649 | 6.30E-51 | -1.69E-46 |
| MS.gene056169 | MS.gene35193 | 0.850325 | 1.83E-60 | -1.69E-46 |
| MS.gene056228 | MS.gene35193 | 0.842556 | 2.41E-58 | -1.69E-46 |
| MS.gene058196 | MS.gene35193 | 0.806137 | 9.52E-50 | -1.69E-46 |
| MS.gene058197 | MS.gene35193 | 0.852312 | 5.01E-61 | -1.69E-46 |
| MS.gene058198 | MS.gene35193 | 0.854008 | 1.64E-61 | -1.69E-46 |
| MS.gene059300 | MS.gene35193 | 0.834876 | 2.33E-56 | -1.69E-46 |
| MS.gene06057 | MS.gene35193 | 0.843621 | 1.25E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35193.t1 | AT3G42170 | 31.402 | 535 | 328 | 7 | 24 | 549 | 148 | 652 | 2.15e-88 | 288 |
| MS.gene35193.t1 | AT3G42170 | 31.402 | 535 | 328 | 7 | 24 | 549 | 170 | 674 | 3.63e-88 | 288 |
| MS.gene35193.t1 | AT1G18560 | 23.518 | 523 | 342 | 18 | 47 | 549 | 165 | 649 | 6.73e-24 | 107 |
Find 81 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCAACTTGTTTCGCAAAA+TGG | 0.173090 | 4.4:+18867256 | MS.gene35193:CDS |
| CTAGGAGGTATAGCAATATT+TGG | 0.187929 | 4.4:-18866896 | None:intergenic |
| TGAGCAAGTTTGAGAAATAT+TGG | 0.282910 | 4.4:+18867797 | MS.gene35193:CDS |
| GGCTTATTGTTATTCAAAAC+TGG | 0.302168 | 4.4:+18867885 | MS.gene35193:CDS |
| AAAGATAAAGATATTCTATT+AGG | 0.313785 | 4.4:-18866995 | None:intergenic |
| CAGCAGCTTGTTACCAAAAC+TGG | 0.316408 | 4.4:+18868207 | MS.gene35193:CDS |
| TTACTTAGATGAGTCAGTTT+TGG | 0.319382 | 4.4:+18868248 | MS.gene35193:CDS |
| ATGTTGGCAGTTTCACAAAA+AGG | 0.324708 | 4.4:-18867649 | None:intergenic |
| ATTTCCGGATCTATCAATAT+TGG | 0.329671 | 4.4:+18868329 | MS.gene35193:CDS |
| AAGTTGAGACTTTCCAGTTT+TGG | 0.333287 | 4.4:-18868220 | None:intergenic |
| GAGTAATAATGATCGATTTC+CGG | 0.338529 | 4.4:+18868314 | MS.gene35193:CDS |
| TCAAATTGATTCACGCTTTG+TGG | 0.339742 | 4.4:+18866784 | MS.gene35193:CDS |
| TAAGCCTCGATAACATTTCT+AGG | 0.352970 | 4.4:-18866914 | None:intergenic |
| TGAGGCATTCAAAGAGTAGA+AGG | 0.355821 | 4.4:+18867404 | MS.gene35193:CDS |
| ATGCTATTTGAGAAGTATTC+TGG | 0.356538 | 4.4:+18867958 | MS.gene35193:CDS |
| ATGTGTTCTAGTTGATAGTT+TGG | 0.358328 | 4.4:+18867732 | MS.gene35193:CDS |
| AGATGAAGATATAAAGAAAA+TGG | 0.366301 | 4.4:+18867762 | MS.gene35193:CDS |
| GGTTGAGTTGTTGAATGATT+GGG | 0.368263 | 4.4:+18867159 | MS.gene35193:CDS |
| GCCAACTTGTTTCGCAAAAT+GGG | 0.374045 | 4.4:+18867257 | MS.gene35193:CDS |
| ATTTAAGGAGTGCGTTGAAC+AGG | 0.385664 | 4.4:+18867432 | MS.gene35193:CDS |
| GTTAATTGTTGTTTAAGCTT+AGG | 0.414274 | 4.4:-18866965 | None:intergenic |
| TATAGTGTCGTTCTTGCATT+GGG | 0.424715 | 4.4:+18867826 | MS.gene35193:CDS |
| GAGCAAGCTTCTAATGACTT+TGG | 0.429442 | 4.4:+18868707 | MS.gene35193:CDS |
| GAGCAAGTTTGAGAAATATT+GGG | 0.431072 | 4.4:+18867798 | MS.gene35193:CDS |
| GTAATGGCATGCTAGAAGAT+TGG | 0.432053 | 4.4:-18868029 | None:intergenic |
| GGTTGGTGGTGTTGATAGTT+CGG | 0.434477 | 4.4:+18867453 | MS.gene35193:CDS |
| TCTGGCAACAACACTTCTGC+TGG | 0.444439 | 4.4:+18867976 | MS.gene35193:CDS |
| TGGTTGAGTTGTTGAATGAT+TGG | 0.445907 | 4.4:+18867158 | MS.gene35193:CDS |
| TTGCTGTAGCTTCCTTTCAC+AGG | 0.452697 | 4.4:-18867917 | None:intergenic |
| TAGTTCGGTTCGCTTACATT+TGG | 0.454929 | 4.4:+18867468 | MS.gene35193:CDS |
| ATCAGAAGCTACGGTGGCAA+TGG | 0.457714 | 4.4:-18868373 | None:intergenic |
| TGTGTTCTAGTTGATAGTTT+GGG | 0.462965 | 4.4:+18867733 | MS.gene35193:CDS |
| TAGTTATGAATTATGTCCTT+CGG | 0.485944 | 4.4:+18867582 | MS.gene35193:CDS |
| TCAGAAGCTACGGTGGCAAT+GGG | 0.504779 | 4.4:-18868372 | None:intergenic |
| TGACAAATCTCACCACTAGT+AGG | 0.517300 | 4.4:-18867130 | None:intergenic |
| CAGGCCAATATTGATAGATC+CGG | 0.521638 | 4.4:-18868333 | None:intergenic |
| GAATTGGAAGTTAAATAGTA+AGG | 0.521677 | 4.4:+18867081 | MS.gene35193:CDS |
| CTGGCAACAACACTTCTGCT+GGG | 0.527197 | 4.4:+18867977 | MS.gene35193:CDS |
| CTAGAATTTGTACTCGCAGT+TGG | 0.528677 | 4.4:+18868466 | MS.gene35193:CDS |
| AAATTAAAGTCTTTATCTCA+TGG | 0.532845 | 4.4:+18868057 | MS.gene35193:CDS |
| TTGAAAGAGCTCTTAAATAC+CGG | 0.537247 | 4.4:+18867527 | MS.gene35193:CDS |
| TGGTGAGATTTGTCAGAGAA+TGG | 0.537446 | 4.4:+18867138 | MS.gene35193:CDS |
| ATTCTAGCTTCCACATTCAT+CGG | 0.540479 | 4.4:-18868450 | None:intergenic |
| GTATAGTGTCGTTCTTGCAT+TGG | 0.543770 | 4.4:+18867825 | MS.gene35193:CDS |
| TAAAGATATTCTATTAGGAA+TGG | 0.545385 | 4.4:-18866990 | None:intergenic |
| CAAATCTCACCACTAGTAGG+AGG | 0.556810 | 4.4:-18867127 | None:intergenic |
| TGGGAGCGGTTCTTGACCCA+CGG | 0.559614 | 4.4:+18867845 | MS.gene35193:CDS |
| GTTGAGTTGTTGAATGATTG+GGG | 0.563887 | 4.4:+18867160 | MS.gene35193:CDS |
| CTTGTTTACCCTCCTACTAG+TGG | 0.565610 | 4.4:+18867118 | MS.gene35193:CDS |
| TATGTCCTTCGGCAGAAGAG+TGG | 0.576340 | 4.4:+18867593 | MS.gene35193:CDS |
| TGTCGTTCTTGCATTGGGAG+CGG | 0.576416 | 4.4:+18867831 | MS.gene35193:CDS |
| CAAAATGGGTTGTTATGTGA+TGG | 0.577716 | 4.4:+18867271 | MS.gene35193:CDS |
| ATATAAAGAAAATGGCTGAA+AGG | 0.580537 | 4.4:+18867770 | MS.gene35193:CDS |
| AAGGAGTGCGTTGAACAGGT+TGG | 0.580671 | 4.4:+18867436 | MS.gene35193:CDS |
| TGTTGTGCTATTAATCATGT+TGG | 0.585834 | 4.4:-18867665 | None:intergenic |
| AAATTCAAAATCAGAAGCTA+CGG | 0.586576 | 4.4:-18868382 | None:intergenic |
| TGGATGCATCAACCTGTGAA+AGG | 0.589753 | 4.4:+18867905 | MS.gene35193:CDS |
| AACTATCAACTAGAACACAT+TGG | 0.591548 | 4.4:-18867729 | None:intergenic |
| AAGGTTGAAAACTTCATCCG+TGG | 0.593618 | 4.4:-18867862 | None:intergenic |
| TGCAAAACAATTCACACGAA+AGG | 0.594908 | 4.4:-18867299 | None:intergenic |
| TGGCAACAACACTTCTGCTG+GGG | 0.603497 | 4.4:+18867978 | MS.gene35193:CDS |
| TCATATGTTGCCGATGAATG+TGG | 0.604745 | 4.4:+18868440 | MS.gene35193:CDS |
| GAAAGGGCAAATCATGTGCA+AGG | 0.607899 | 4.4:-18866826 | None:intergenic |
| AAATGGATGTATTACAATGG+TGG | 0.610990 | 4.4:+18868289 | MS.gene35193:CDS |
| TTCAAAATCAGAAGCTACGG+TGG | 0.614303 | 4.4:-18868379 | None:intergenic |
| GGGAACACTTAACAAGTCGC+AGG | 0.614339 | 4.4:-18868352 | None:intergenic |
| GAGTGCGTTGAACAGGTTGG+TGG | 0.617258 | 4.4:+18867439 | MS.gene35193:CDS |
| AATATTTGGATTTAAGAACT+CGG | 0.621104 | 4.4:-18866882 | None:intergenic |
| GAAAACTTTCGAACGCACAC+CGG | 0.621210 | 4.4:-18867546 | None:intergenic |
| GATGGAGAAGACGACGACGA+TGG | 0.621975 | 4.4:+18868641 | MS.gene35193:intron |
| GAGAGAGTATCATGTTTGTG+AGG | 0.628223 | 4.4:+18867386 | MS.gene35193:CDS |
| AAAGATAGAATTTGATAACG+AGG | 0.635017 | 4.4:+18866757 | MS.gene35193:CDS |
| AGGTTGAAAACTTCATCCGT+GGG | 0.636207 | 4.4:-18867861 | None:intergenic |
| ACCTCCTAGAAATGTTATCG+AGG | 0.637447 | 4.4:+18866910 | MS.gene35193:CDS |
| GAGGCATTCAAAGAGTAGAA+GGG | 0.641403 | 4.4:+18867405 | MS.gene35193:CDS |
| TAGTAGGAGGGTAAACAAGA+CGG | 0.651039 | 4.4:-18867114 | None:intergenic |
| AAATCTCACCACTAGTAGGA+GGG | 0.654396 | 4.4:-18867126 | None:intergenic |
| GCGTTAAAACTAGTTAGCTG+TGG | 0.661366 | 4.4:+18867349 | MS.gene35193:CDS |
| GCCTCGATAACATTTCTAGG+AGG | 0.669214 | 4.4:-18866911 | None:intergenic |
| CAGAAATGGATGTATTACAA+TGG | 0.706453 | 4.4:+18868286 | MS.gene35193:CDS |
| ATTCGCGTCAACAAAATGAG+CGG | 0.717347 | 4.4:-18867062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAGTTTTTATATATTTTT+TGG | + | chr4.4:18868090-18868109 | MS.gene35193:intron | 10.0% |
| !! | AAAGATAAAGATATTCTATT+AGG | - | chr4.4:18866998-18867017 | None:intergenic | 15.0% |
| !! | TATAAAAACTTACATCAAAT+AGG | - | chr4.4:18868083-18868102 | None:intergenic | 15.0% |
| !! | AAATTAAAGTCTTTATCTCA+TGG | + | chr4.4:18868057-18868076 | MS.gene35193:CDS | 20.0% |
| !! | AACTTGTAAAAAATACAAGT+TGG | - | chr4.4:18867701-18867720 | None:intergenic | 20.0% |
| !! | AATATTTGGATTTAAGAACT+CGG | - | chr4.4:18866885-18866904 | None:intergenic | 20.0% |
| !! | AGATGAAGATATAAAGAAAA+TGG | + | chr4.4:18867762-18867781 | MS.gene35193:CDS | 20.0% |
| !! | TAAAGATATTCTATTAGGAA+TGG | - | chr4.4:18866993-18867012 | None:intergenic | 20.0% |
| !! | TTAATAACTAAATTTACCCA+TGG | - | chr4.4:18868600-18868619 | None:intergenic | 20.0% |
| !!! | ACTTGTATTTTTTACAAGTT+TGG | + | chr4.4:18867701-18867720 | MS.gene35193:CDS | 20.0% |
| !!! | ATCTTTATCTTTTGATTTGT+GGG | + | chr4.4:18867006-18867025 | MS.gene35193:CDS | 20.0% |
| !!! | GACTTTAATTTCTTTTGTAA+TGG | - | chr4.4:18868048-18868067 | None:intergenic | 20.0% |
| !!! | TATCTTTATCTTTTGATTTG+TGG | + | chr4.4:18867005-18867024 | MS.gene35193:CDS | 20.0% |
| ! | AAATTCAAAATCAGAAGCTA+CGG | - | chr4.4:18868385-18868404 | None:intergenic | 25.0% |
| ! | AATCGACAATGATGAAAAAA+TGG | + | chr4.4:18868685-18868704 | MS.gene35193:CDS | 25.0% |
| ! | ATATAAAGAAAATGGCTGAA+AGG | + | chr4.4:18867770-18867789 | MS.gene35193:CDS | 25.0% |
| ! | ATTACATTTCACAAGTGAAA+AGG | - | chr4.4:18868167-18868186 | None:intergenic | 25.0% |
| ! | CTTCAATTATGATATGTAGA+TGG | + | chr4.4:18868623-18868642 | MS.gene35193:intron | 25.0% |
| ! | GAATTGGAAGTTAAATAGTA+AGG | + | chr4.4:18867081-18867100 | MS.gene35193:CDS | 25.0% |
| ! | TAGTTATGAATTATGTCCTT+CGG | + | chr4.4:18867582-18867601 | MS.gene35193:CDS | 25.0% |
| ! | TTTCACTTGTGAAATGTAAT+AGG | + | chr4.4:18868167-18868186 | MS.gene35193:intron | 25.0% |
| !! | AAAAAATACAAGTTGGAAGT+AGG | - | chr4.4:18867694-18867713 | None:intergenic | 25.0% |
| !! | TCTGATTTTGAATTTTGCAT+GGG | + | chr4.4:18868390-18868409 | MS.gene35193:CDS | 25.0% |
| !! | TTCTGATTTTGAATTTTGCA+TGG | + | chr4.4:18868389-18868408 | MS.gene35193:CDS | 25.0% |
| !! | TTGTACAATTTTGTTAGTGA+GGG | + | chr4.4:18868489-18868508 | MS.gene35193:CDS | 25.0% |
| !! | TTTTGAATAACAATAAGCCA+AGG | - | chr4.4:18867884-18867903 | None:intergenic | 25.0% |
| !!! | AAAGATAGAATTTGATAACG+AGG | + | chr4.4:18866757-18866776 | MS.gene35193:CDS | 25.0% |
| !!! | GTTAATTGTTGTTTAAGCTT+AGG | - | chr4.4:18866968-18866987 | None:intergenic | 25.0% |
| !!! | TGTATTGTTTTGATAACCAT+GGG | + | chr4.4:18868581-18868600 | MS.gene35193:intron | 25.0% |
| !!! | TTGTATTGTTTTGATAACCA+TGG | + | chr4.4:18868580-18868599 | MS.gene35193:intron | 25.0% |
| AAATGGATGTATTACAATGG+TGG | + | chr4.4:18868289-18868308 | MS.gene35193:CDS | 30.0% | |
| AACTATCAACTAGAACACAT+TGG | - | chr4.4:18867732-18867751 | None:intergenic | 30.0% | |
| ATTTCCGGATCTATCAATAT+TGG | + | chr4.4:18868329-18868348 | MS.gene35193:CDS | 30.0% | |
| CAGAAATGGATGTATTACAA+TGG | + | chr4.4:18868286-18868305 | MS.gene35193:CDS | 30.0% | |
| GAGCAAGTTTGAGAAATATT+GGG | + | chr4.4:18867798-18867817 | MS.gene35193:CDS | 30.0% | |
| GAGTAGAAGGGAAAAATTTA+AGG | + | chr4.4:18867417-18867436 | MS.gene35193:CDS | 30.0% | |
| TGAGCAAGTTTGAGAAATAT+TGG | + | chr4.4:18867797-18867816 | MS.gene35193:CDS | 30.0% | |
| TTGAAAGAGCTCTTAAATAC+CGG | + | chr4.4:18867527-18867546 | MS.gene35193:CDS | 30.0% | |
| ! | GAGTAATAATGATCGATTTC+CGG | + | chr4.4:18868314-18868333 | MS.gene35193:CDS | 30.0% |
| ! | GGCTTATTGTTATTCAAAAC+TGG | + | chr4.4:18867885-18867904 | MS.gene35193:CDS | 30.0% |
| ! | GTTGTACAATTTTGTTAGTG+AGG | + | chr4.4:18868488-18868507 | MS.gene35193:CDS | 30.0% |
| ! | TGTTGTGCTATTAATCATGT+TGG | - | chr4.4:18867668-18867687 | None:intergenic | 30.0% |
| ! | TTACTTAGATGAGTCAGTTT+TGG | + | chr4.4:18868248-18868267 | MS.gene35193:CDS | 30.0% |
| ! | TTGAATTTGTTTAACCTCGT+TGG | + | chr4.4:18868138-18868157 | MS.gene35193:intron | 30.0% |
| ! | TTTTCGTTGTTATGCAGAAA+TGG | + | chr4.4:18868272-18868291 | MS.gene35193:CDS | 30.0% |
| !! | AAGAACTTTTAAGGAGAATC+AGG | + | chr4.4:18868005-18868024 | MS.gene35193:CDS | 30.0% |
| !! | ATGCTATTTGAGAAGTATTC+TGG | + | chr4.4:18867958-18867977 | MS.gene35193:CDS | 30.0% |
| !! | ATGTGTTCTAGTTGATAGTT+TGG | + | chr4.4:18867732-18867751 | MS.gene35193:CDS | 30.0% |
| !! | TGTGTTCTAGTTGATAGTTT+GGG | + | chr4.4:18867733-18867752 | MS.gene35193:CDS | 30.0% |
| ATGTTGGCAGTTTCACAAAA+AGG | - | chr4.4:18867652-18867671 | None:intergenic | 35.0% | |
| TAAGCCTCGATAACATTTCT+AGG | - | chr4.4:18866917-18866936 | None:intergenic | 35.0% | |
| TCGAGCTCGAAAAAATGAAA+GGG | - | chr4.4:18866845-18866864 | None:intergenic | 35.0% | |
| TGCAAAACAATTCACACGAA+AGG | - | chr4.4:18867302-18867321 | None:intergenic | 35.0% | |
| ! | AAGTTGAGACTTTCCAGTTT+TGG | - | chr4.4:18868223-18868242 | None:intergenic | 35.0% |
| ! | CTAGGAGGTATAGCAATATT+TGG | - | chr4.4:18866899-18866918 | None:intergenic | 35.0% |
| ! | GGTTGAGTTGTTGAATGATT+GGG | + | chr4.4:18867159-18867178 | MS.gene35193:CDS | 35.0% |
| ! | GTTGAGTTGTTGAATGATTG+GGG | + | chr4.4:18867160-18867179 | MS.gene35193:CDS | 35.0% |
| ! | TATAGTGTCGTTCTTGCATT+GGG | + | chr4.4:18867826-18867845 | MS.gene35193:CDS | 35.0% |
| ! | TCAAATTGATTCACGCTTTG+TGG | + | chr4.4:18866784-18866803 | MS.gene35193:CDS | 35.0% |
| ! | TGGGGTTCAAAGAACTTTTA+AGG | + | chr4.4:18867996-18868015 | MS.gene35193:CDS | 35.0% |
| ! | TGGTTGAGTTGTTGAATGAT+TGG | + | chr4.4:18867158-18867177 | MS.gene35193:CDS | 35.0% |
| !! | ATTCTAGCTTCCACATTCAT+CGG | - | chr4.4:18868453-18868472 | None:intergenic | 35.0% |
| !! | CAAAATGGGTTGTTATGTGA+TGG | + | chr4.4:18867271-18867290 | MS.gene35193:CDS | 35.0% |
| !!! | TTTCATTTTTTCGAGCTCGA+GGG | + | chr4.4:18866845-18866864 | MS.gene35193:CDS | 35.0% |
| AAATCTCACCACTAGTAGGA+GGG | - | chr4.4:18867129-18867148 | None:intergenic | 40.0% | |
| AAGGTTGAAAACTTCATCCG+TGG | - | chr4.4:18867865-18867884 | None:intergenic | 40.0% | |
| AAGTGAAAAGGAAACCAACG+AGG | - | chr4.4:18868155-18868174 | None:intergenic | 40.0% | |
| ACCTCCTAGAAATGTTATCG+AGG | + | chr4.4:18866910-18866929 | MS.gene35193:CDS | 40.0% | |
| AGGTTGAAAACTTCATCCGT+GGG | - | chr4.4:18867864-18867883 | None:intergenic | 40.0% | |
| ATTCGCGTCAACAAAATGAG+CGG | - | chr4.4:18867065-18867084 | None:intergenic | 40.0% | |
| CAGGCCAATATTGATAGATC+CGG | - | chr4.4:18868336-18868355 | None:intergenic | 40.0% | |
| CTAGAATTTGTACTCGCAGT+TGG | + | chr4.4:18868466-18868485 | MS.gene35193:CDS | 40.0% | |
| CTCGAGCTCGAAAAAATGAA+AGG | - | chr4.4:18866846-18866865 | None:intergenic | 40.0% | |
| GAGCAAGCTTCTAATGACTT+TGG | + | chr4.4:18868707-18868726 | MS.gene35193:CDS | 40.0% | |
| GCGTTAAAACTAGTTAGCTG+TGG | + | chr4.4:18867349-18867368 | MS.gene35193:CDS | 40.0% | |
| GTAATGGCATGCTAGAAGAT+TGG | - | chr4.4:18868032-18868051 | None:intergenic | 40.0% | |
| TAGTAGGAGGGTAAACAAGA+CGG | - | chr4.4:18867117-18867136 | None:intergenic | 40.0% | |
| TCATATGTTGCCGATGAATG+TGG | + | chr4.4:18868440-18868459 | MS.gene35193:CDS | 40.0% | |
| TGACAAATCTCACCACTAGT+AGG | - | chr4.4:18867133-18867152 | None:intergenic | 40.0% | |
| TGGTGAGATTTGTCAGAGAA+TGG | + | chr4.4:18867138-18867157 | MS.gene35193:CDS | 40.0% | |
| TTCAAAATCAGAAGCTACGG+TGG | - | chr4.4:18868382-18868401 | None:intergenic | 40.0% | |
| ! | ACCCATTTTGCGAAACAAGT+TGG | - | chr4.4:18867261-18867280 | None:intergenic | 40.0% |
| ! | ACGGATGAAGTTTTCAACCT+TGG | + | chr4.4:18867864-18867883 | MS.gene35193:CDS | 40.0% |
| ! | AGCCAACTTGTTTCGCAAAA+TGG | + | chr4.4:18867256-18867275 | MS.gene35193:CDS | 40.0% |
| ! | ATTTAAGGAGTGCGTTGAAC+AGG | + | chr4.4:18867432-18867451 | MS.gene35193:CDS | 40.0% |
| ! | CTCATTTTGTTGACGCGAAT+TGG | + | chr4.4:18867065-18867084 | MS.gene35193:CDS | 40.0% |
| ! | GAGGCATTCAAAGAGTAGAA+GGG | + | chr4.4:18867405-18867424 | MS.gene35193:CDS | 40.0% |
| ! | GCCAACTTGTTTCGCAAAAT+GGG | + | chr4.4:18867257-18867276 | MS.gene35193:CDS | 40.0% |
| ! | GTATAGTGTCGTTCTTGCAT+TGG | + | chr4.4:18867825-18867844 | MS.gene35193:CDS | 40.0% |
| ! | TAGTTCGGTTCGCTTACATT+TGG | + | chr4.4:18867468-18867487 | MS.gene35193:CDS | 40.0% |
| ! | TGAGGCATTCAAAGAGTAGA+AGG | + | chr4.4:18867404-18867423 | MS.gene35193:CDS | 40.0% |
| !! | GAGAGAGTATCATGTTTGTG+AGG | + | chr4.4:18867386-18867405 | MS.gene35193:CDS | 40.0% |
| !! | TTTTGGTAACAAGCTGCTGA+TGG | - | chr4.4:18868206-18868225 | None:intergenic | 40.0% |
| !!! | CTTTCATTTTTTCGAGCTCG+AGG | + | chr4.4:18866844-18866863 | MS.gene35193:CDS | 40.0% |
| CAAATCTCACCACTAGTAGG+AGG | - | chr4.4:18867130-18867149 | None:intergenic | 45.0% | |
| CTTGTTTACCCTCCTACTAG+TGG | + | chr4.4:18867118-18867137 | MS.gene35193:CDS | 45.0% | |
| GAAAACTTTCGAACGCACAC+CGG | - | chr4.4:18867549-18867568 | None:intergenic | 45.0% | |
| GAAAGGGCAAATCATGTGCA+AGG | - | chr4.4:18866829-18866848 | None:intergenic | 45.0% | |
| TGGATGCATCAACCTGTGAA+AGG | + | chr4.4:18867905-18867924 | MS.gene35193:CDS | 45.0% | |
| TTGCTGTAGCTTCCTTTCAC+AGG | - | chr4.4:18867920-18867939 | None:intergenic | 45.0% | |
| ! | GCCTCGATAACATTTCTAGG+AGG | - | chr4.4:18866914-18866933 | None:intergenic | 45.0% |
| !! | CAGCAGCTTGTTACCAAAAC+TGG | + | chr4.4:18868207-18868226 | MS.gene35193:CDS | 45.0% |
| !! | GGTTGGTGGTGTTGATAGTT+CGG | + | chr4.4:18867453-18867472 | MS.gene35193:CDS | 45.0% |
| ATCAGAAGCTACGGTGGCAA+TGG | - | chr4.4:18868376-18868395 | None:intergenic | 50.0% | |
| CTGGCAACAACACTTCTGCT+GGG | + | chr4.4:18867977-18867996 | MS.gene35193:CDS | 50.0% | |
| GGGAACACTTAACAAGTCGC+AGG | - | chr4.4:18868355-18868374 | None:intergenic | 50.0% | |
| TATGTCCTTCGGCAGAAGAG+TGG | + | chr4.4:18867593-18867612 | MS.gene35193:CDS | 50.0% | |
| TCAGAAGCTACGGTGGCAAT+GGG | - | chr4.4:18868375-18868394 | None:intergenic | 50.0% | |
| TCTGGCAACAACACTTCTGC+TGG | + | chr4.4:18867976-18867995 | MS.gene35193:CDS | 50.0% | |
| TGGCAACAACACTTCTGCTG+GGG | + | chr4.4:18867978-18867997 | MS.gene35193:CDS | 50.0% | |
| TGTCGTTCTTGCATTGGGAG+CGG | + | chr4.4:18867831-18867850 | MS.gene35193:CDS | 50.0% | |
| ! | AAGGAGTGCGTTGAACAGGT+TGG | + | chr4.4:18867436-18867455 | MS.gene35193:CDS | 50.0% |
| ! | CTTTTCCACTCTTCTGCCGA+AGG | - | chr4.4:18867601-18867620 | None:intergenic | 50.0% |
| !! | TTTTCGAGCTCGAGGGAATG+AGG | + | chr4.4:18866852-18866871 | MS.gene35193:CDS | 50.0% |
| GATGGAGAAGACGACGACGA+TGG | + | chr4.4:18868641-18868660 | MS.gene35193:intron | 55.0% | |
| ! | GAGTGCGTTGAACAGGTTGG+TGG | + | chr4.4:18867439-18867458 | MS.gene35193:CDS | 55.0% |
| TGGGAGCGGTTCTTGACCCA+CGG | + | chr4.4:18867845-18867864 | MS.gene35193:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18866746 | 18868763 | 18866746 | ID=MS.gene35193 |
| chr4.4 | mRNA | 18866746 | 18868763 | 18866746 | ID=MS.gene35193.t1;Parent=MS.gene35193 |
| chr4.4 | exon | 18866746 | 18868089 | 18866746 | ID=MS.gene35193.t1.exon1;Parent=MS.gene35193.t1 |
| chr4.4 | CDS | 18866746 | 18868089 | 18866746 | ID=cds.MS.gene35193.t1;Parent=MS.gene35193.t1 |
| chr4.4 | exon | 18868189 | 18868510 | 18868189 | ID=MS.gene35193.t1.exon2;Parent=MS.gene35193.t1 |
| chr4.4 | CDS | 18868189 | 18868510 | 18868189 | ID=cds.MS.gene35193.t1;Parent=MS.gene35193.t1 |
| chr4.4 | exon | 18868642 | 18868763 | 18868642 | ID=MS.gene35193.t1.exon3;Parent=MS.gene35193.t1 |
| chr4.4 | CDS | 18868642 | 18868763 | 18868642 | ID=cds.MS.gene35193.t1;Parent=MS.gene35193.t1 |
| Gene Sequence |
| Protein sequence |
