AlfalfaGEDB | MS.gene05092

M. sativa cultivar XinJiangDaYe / MS.gene05092

KEGG: K01520
GO: GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
PFAM: PF00692.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05092.t1	RHN67997.1	98.7	150	2	0	1	150	38	187	1.00E-74	289.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05092.t1	Q9STG6	87.9	141	17	0	10	150	26	166	1.7e-65	250.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05092.t1	A0A072UXL1	98.7	150	2	0	1	150	1	150	7.5e-75	289.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05092	MS.gene051478	0.806326	8.69E-50	-1.69E-46
MS.gene05092	MS.gene33123	0.818799	1.62E-52	-1.69E-46
MS.gene05092	MS.gene34752	0.823707	1.20E-53	-1.69E-46
MS.gene05092	MS.gene35193	0.809867	1.53E-50	-1.69E-46
MS.gene05092	MS.gene40409	0.814625	1.40E-51	-1.69E-46
MS.gene05092	MS.gene51589	0.8173	3.54E-52	-1.69E-46
MS.gene05092	MS.gene63853	0.807975	3.89E-50	-1.69E-46
MS.gene05092	MS.gene82546	0.814109	1.82E-51	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene79799	MS.gene05092	PPI
MS.gene05092	MS.gene47284	PPI
MS.gene49838	MS.gene05092	PPI
MS.gene042871	MS.gene05092	PPI
MS.gene87898	MS.gene05092	PPI
MS.gene05092	MS.gene066960	PPI
MS.gene55626	MS.gene05092	PPI
MS.gene82109	MS.gene05092	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05092.t1	MTR_3g063110	98.667	150	2	0	1	150	1	150	1.01e-103	293

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05092.t1	AT3G46940	87.943	141	17	0	10	150	26	166	5.46e-87	251
MS.gene05092.t1	AT3G46940	87.943	141	17	0	10	150	67	207	6.22e-87	253

Find 46 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCGGAGGTTTCTGAGGTTT+TGG	0.233953	3.4:+65321632	MS.gene05092:CDS
GTTAGAGGTGAAGGTGGTTT+TGG	0.293840	3.4:+65321669	MS.gene05092:CDS
GATTTGGATTCTACTGTTAG+AGG	0.343621	3.4:+65321654	MS.gene05092:CDS
TTTCTTCACTCTGAGAAAAC+TGG	0.362791	3.4:-65321204	None:intergenic
ACACGAGCATAGGTTCCTTC+AGG	0.369361	3.4:-65321359	None:intergenic
TCAACAATGTCCAACTTAAA+CGG	0.388632	3.4:+65321170	None:intergenic
CTGATTACAGAGGACCTGTT+GGG	0.415838	3.4:+65321523	MS.gene05092:CDS
CATTCGATTGACGTTGGTGC+TGG	0.432456	3.4:+65321489	MS.gene05092:CDS
TTCCATGTCAACCCCGATCT+TGG	0.442509	3.4:-65321465	None:intergenic
GGCGGAGAGAGGAGAGCCGC+GGG	0.455885	3.4:-65321252	None:intergenic
ATGAGAGCTTTGCCGCGAGC+AGG	0.461473	3.4:-65321311	None:intergenic
TGAAACGACGCCGTTTAAGT+TGG	0.465891	3.4:-65321180	None:intergenic
CGCCAAGATCGGGGTTGACA+TGG	0.476498	3.4:+65321463	MS.gene05092:CDS
TTAAACAGTATAACCCCAAC+AGG	0.497604	3.4:-65321537	None:intergenic
CGCGGCTCTCCTCTCTCCGC+CGG	0.497937	3.4:+65321254	MS.gene05092:CDS
GGAAGGTATAACGGCTTTGT+CGG	0.505146	3.4:-65321231	None:intergenic
GATTCTACTGTTAGAGGTGA+AGG	0.505946	3.4:+65321660	MS.gene05092:CDS
CTCAAGCGCCGCCGATTCAA+AGG	0.511929	3.4:+65321286	MS.gene05092:CDS
CTCTCCATCGCCGTCCCTGA+AGG	0.513836	3.4:+65321344	MS.gene05092:CDS
GGCGCTTGAGAGATCGTATC+CGG	0.519854	3.4:-65321273	None:intergenic
TATTGAGAAGATTATTACTC+CGG	0.523127	3.4:+65321614	MS.gene05092:CDS
CACGAGCATAGGTTCCTTCA+GGG	0.535140	3.4:-65321358	None:intergenic
GCGAGCAGGAACCTTTGAAT+CGG	0.540643	3.4:-65321297	None:intergenic
AGAGCCGCGGGAAGGTATAA+CGG	0.542038	3.4:-65321240	None:intergenic
AGATCGTATCCGGCGGAGAG+AGG	0.550109	3.4:-65321263	None:intergenic
TATTACTCCGGAGGTTTCTG+AGG	0.552838	3.4:+65321626	MS.gene05092:CDS
ACGGCGATGGAGAGATCTGT+GGG	0.554559	3.4:-65321335	None:intergenic
GGTTCCTTCAGGGACGGCGA+TGG	0.559917	3.4:-65321348	None:intergenic
TCCAAAACCTCAGAAACCTC+CGG	0.565876	3.4:-65321633	None:intergenic
TCTACTGTTAGAGGTGAAGG+TGG	0.578300	3.4:+65321663	MS.gene05092:CDS
GACGGCGATGGAGAGATCTG+TGG	0.578622	3.4:-65321336	None:intergenic
AGCAGGAACCTTTGAATCGG+CGG	0.581168	3.4:-65321294	None:intergenic
GTAATTACCAACACGAGCAT+AGG	0.588762	3.4:-65321369	None:intergenic
GAGAGAGGAGAGCCGCGGGA+AGG	0.593764	3.4:-65321248	None:intergenic
GAAGGAACCTATGCTCGTGT+TGG	0.606547	3.4:+65321362	MS.gene05092:CDS
TGAGAAGATTATTACTCCGG+AGG	0.607825	3.4:+65321617	MS.gene05092:CDS
CGGCGGAGAGAGGAGAGCCG+CGG	0.611864	3.4:-65321253	None:intergenic
GCTGATTACAGAGGACCTGT+TGG	0.614644	3.4:+65321522	MS.gene05092:CDS
TGGAAGCATTCGATTGACGT+TGG	0.614719	3.4:+65321483	MS.gene05092:CDS
AGCATAGGTTCCTTCAGGGA+CGG	0.629807	3.4:-65321354	None:intergenic
GATTCAAAGGTTCCTGCTCG+CGG	0.632457	3.4:+65321299	MS.gene05092:CDS
TGATTACAGAGGACCTGTTG+GGG	0.654205	3.4:+65321524	MS.gene05092:CDS
AAAGCCGTTATACCTTCCCG+CGG	0.736048	3.4:+65321236	MS.gene05092:CDS
GTGATTGATGCTGATTACAG+AGG	0.740502	3.4:+65321513	MS.gene05092:CDS
GCTTGAGAGATCGTATCCGG+CGG	0.743244	3.4:-65321270	None:intergenic
CGGCGATGGAGAGATCTGTG+GGG	0.756952	3.4:-65321334	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTTCAAAAACCTAAAAT+TGG	-	chr3.4:65321410-65321429	None:intergenic	15.0%
!!!	ATTTTAGGTTTTTGAAATTT+AGG	+	chr3.4:65321410-65321429	MS.gene05092:intron	15.0%
!!!	TTTTAGGTTTTTGAAATTTA+GGG	+	chr3.4:65321411-65321430	MS.gene05092:intron	15.0%
!!	AAAAACCTAAAATTGGAAAA+GGG	-	chr3.4:65321403-65321422	None:intergenic	20.0%
!	AAAACCTAAAATTGGAAAAG+GGG	-	chr3.4:65321402-65321421	None:intergenic	25.0%
!	CAAAAACCTAAAATTGGAAA+AGG	-	chr3.4:65321404-65321423	None:intergenic	25.0%
!	TATTGAGAAGATTATTACTC+CGG	+	chr3.4:65321614-65321633	MS.gene05092:CDS	25.0%
	AAACCTAAAATTGGAAAAGG+GGG	-	chr3.4:65321401-65321420	None:intergenic	30.0%
!!!	GTTGATTTTGAAGTGAAAGT+TGG	+	chr3.4:65321570-65321589	MS.gene05092:CDS	30.0%
	GATTTGGATTCTACTGTTAG+AGG	+	chr3.4:65321654-65321673	MS.gene05092:CDS	35.0%
	TTAAACAGTATAACCCCAAC+AGG	-	chr3.4:65321540-65321559	None:intergenic	35.0%
!	TTTCCCCCTTTTCCAATTTT+AGG	+	chr3.4:65321395-65321414	MS.gene05092:intron	35.0%
!	TTTCTTCACTCTGAGAAAAC+TGG	-	chr3.4:65321207-65321226	None:intergenic	35.0%
	GATTCTACTGTTAGAGGTGA+AGG	+	chr3.4:65321660-65321679	MS.gene05092:CDS	40.0%
	GTAATTACCAACACGAGCAT+AGG	-	chr3.4:65321372-65321391	None:intergenic	40.0%
	TGAGAAGATTATTACTCCGG+AGG	+	chr3.4:65321617-65321636	MS.gene05092:CDS	40.0%
!	GTGATTGATGCTGATTACAG+AGG	+	chr3.4:65321513-65321532	MS.gene05092:CDS	40.0%
!!!	AAGGTGGTTTTGGATCTACT+GGG	+	chr3.4:65321679-65321698	MS.gene05092:CDS	40.0%
!!!	GGTTTCTGAGGTTTTGGATT+TGG	+	chr3.4:65321638-65321657	MS.gene05092:CDS	40.0%
	CTGATTACAGAGGACCTGTT+GGG	+	chr3.4:65321523-65321542	MS.gene05092:CDS	45.0%
	TATTACTCCGGAGGTTTCTG+AGG	+	chr3.4:65321626-65321645	MS.gene05092:CDS	45.0%
	TCCAAAACCTCAGAAACCTC+CGG	-	chr3.4:65321636-65321655	None:intergenic	45.0%
	TCTACTGTTAGAGGTGAAGG+TGG	+	chr3.4:65321663-65321682	MS.gene05092:CDS	45.0%
	TGAAACGACGCCGTTTAAGT+TGG	-	chr3.4:65321183-65321202	None:intergenic	45.0%
	TGATTACAGAGGACCTGTTG+GGG	+	chr3.4:65321524-65321543	MS.gene05092:CDS	45.0%
!	ATTTTTGCAGCGCCAAGATC+GGG	+	chr3.4:65321453-65321472	MS.gene05092:intron	45.0%
!	GATTTTTGCAGCGCCAAGAT+CGG	+	chr3.4:65321452-65321471	MS.gene05092:intron	45.0%
!	GGAAGGTATAACGGCTTTGT+CGG	-	chr3.4:65321234-65321253	None:intergenic	45.0%
!	GTTAGAGGTGAAGGTGGTTT+TGG	+	chr3.4:65321669-65321688	MS.gene05092:CDS	45.0%
!!	TGGAAGCATTCGATTGACGT+TGG	+	chr3.4:65321483-65321502	MS.gene05092:CDS	45.0%
!!!	AGGTGGTTTTGGATCTACTG+GGG	+	chr3.4:65321680-65321699	MS.gene05092:CDS	45.0%
!!!	GAAGGTGGTTTTGGATCTAC+TGG	+	chr3.4:65321678-65321697	MS.gene05092:CDS	45.0%
	AAAGCCGTTATACCTTCCCG+CGG	+	chr3.4:65321236-65321255	MS.gene05092:CDS	50.0%
	ACACGAGCATAGGTTCCTTC+AGG	-	chr3.4:65321362-65321381	None:intergenic	50.0%
	AGCAGGAACCTTTGAATCGG+CGG	-	chr3.4:65321297-65321316	None:intergenic	50.0%
	AGCATAGGTTCCTTCAGGGA+CGG	-	chr3.4:65321357-65321376	None:intergenic	50.0%
	CACGAGCATAGGTTCCTTCA+GGG	-	chr3.4:65321361-65321380	None:intergenic	50.0%
	CATTCGATTGACGTTGGTGC+TGG	+	chr3.4:65321489-65321508	MS.gene05092:CDS	50.0%
	GAAGGAACCTATGCTCGTGT+TGG	+	chr3.4:65321362-65321381	MS.gene05092:CDS	50.0%
	GATTCAAAGGTTCCTGCTCG+CGG	+	chr3.4:65321299-65321318	MS.gene05092:CDS	50.0%
	GCGAGCAGGAACCTTTGAAT+CGG	-	chr3.4:65321300-65321319	None:intergenic	50.0%
	GCTGATTACAGAGGACCTGT+TGG	+	chr3.4:65321522-65321541	MS.gene05092:CDS	50.0%
	TTCCATGTCAACCCCGATCT+TGG	-	chr3.4:65321468-65321487	None:intergenic	50.0%
!	TTTTTGCAGCGCCAAGATCG+GGG	+	chr3.4:65321454-65321473	MS.gene05092:intron	50.0%
!!!	TCCGGAGGTTTCTGAGGTTT+TGG	+	chr3.4:65321632-65321651	MS.gene05092:CDS	50.0%
	ACGGCGATGGAGAGATCTGT+GGG	-	chr3.4:65321338-65321357	None:intergenic	55.0%
	GCTTGAGAGATCGTATCCGG+CGG	-	chr3.4:65321273-65321292	None:intergenic	55.0%
	GGCGCTTGAGAGATCGTATC+CGG	-	chr3.4:65321276-65321295	None:intergenic	55.0%
!	AGAGCCGCGGGAAGGTATAA+CGG	-	chr3.4:65321243-65321262	None:intergenic	55.0%
	AGATCGTATCCGGCGGAGAG+AGG	-	chr3.4:65321266-65321285	None:intergenic	60.0%
	ATGAGAGCTTTGCCGCGAGC+AGG	-	chr3.4:65321314-65321333	None:intergenic	60.0%
	CGCCAAGATCGGGGTTGACA+TGG	+	chr3.4:65321463-65321482	MS.gene05092:CDS	60.0%
	CGGCGATGGAGAGATCTGTG+GGG	-	chr3.4:65321337-65321356	None:intergenic	60.0%
	GACGGCGATGGAGAGATCTG+TGG	-	chr3.4:65321339-65321358	None:intergenic	60.0%
!!	CTCAAGCGCCGCCGATTCAA+AGG	+	chr3.4:65321286-65321305	MS.gene05092:CDS	60.0%
	CTCTCCATCGCCGTCCCTGA+AGG	+	chr3.4:65321344-65321363	MS.gene05092:CDS	65.0%
	GGTTCCTTCAGGGACGGCGA+TGG	-	chr3.4:65321351-65321370	None:intergenic	65.0%
	GAGAGAGGAGAGCCGCGGGA+AGG	-	chr3.4:65321251-65321270	None:intergenic	70.0%
	CGCGGCTCTCCTCTCTCCGC+CGG	+	chr3.4:65321254-65321273	MS.gene05092:CDS	75.0%
	CGGCGGAGAGAGGAGAGCCG+CGG	-	chr3.4:65321256-65321275	None:intergenic	75.0%
	GGCGGAGAGAGGAGAGCCGC+GGG	-	chr3.4:65321255-65321274	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	65321176	65321707	65321176	ID=MS.gene05092
chr3.4	mRNA	65321176	65321707	65321176	ID=MS.gene05092.t1;Parent=MS.gene05092
chr3.4	exon	65321176	65321383	65321176	ID=MS.gene05092.t1.exon1;Parent=MS.gene05092.t1
chr3.4	CDS	65321176	65321383	65321176	ID=cds.MS.gene05092.t1;Parent=MS.gene05092.t1
chr3.4	exon	65321463	65321707	65321463	ID=MS.gene05092.t1.exon2;Parent=MS.gene05092.t1
chr3.4	CDS	65321463	65321707	65321463	ID=cds.MS.gene05092.t1;Parent=MS.gene05092.t1

Gene Sequence

>MS.gene05092

ATGTCCAACTTAAACGGCGTCGTTTCATCCAGTTTTCTCAGAGTGAAGAAACTCTCCGACAAAGCCGTTATACCTTCCCGCGGCTCTCCTCTCTCCGCCGGATACGATCTCTCAAGCGCCGCCGATTCAAAGGTTCCTGCTCGCGGCAAAGCTCTCATCCCCACAGATCTCTCCATCGCCGTCCCTGAAGGAACCTATGCTCGTGTTGGTAATTACTGTTTTCCCCCTTTTCCAATTTTAGGTTTTTGAAATTTAGGGTTTTTGATTGAATTGAATGATTTTTGCAGCGCCAAGATCGGGGTTGACATGGAAGCATTCGATTGACGTTGGTGCTGGAGTGATTGATGCTGATTACAGAGGACCTGTTGGGGTTATACTGTTTAATCATTCTGATGTTGATTTTGAAGTGAAAGTTGGTGATAGAGTTGCTCAGTTGATTATTGAGAAGATTATTACTCCGGAGGTTTCTGAGGTTTTGGATTTGGATTCTACTGTTAGAGGTGAAGGTGGTTTTGGATCTACTGGGGTTTGA

Protein sequence

>MS.gene05092.t1

MSNLNGVVSSSFLRVKKLSDKAVIPSRGSPLSAGYDLSSAADSKVPARGKALIPTDLSIAVPEGTYARVAPRSGLTWKHSIDVGAGVIDADYRGPVGVILFNHSDVDFEVKVGDRVAQLIIEKIITPEVSEVLDLDSTVRGEGGFGSTGV