AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35441

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35441.t1 MTR_2g086890 93.543 604 35 2 1 604 42 641 0.0 1116
MS.gene35441.t1 MTR_4g052400 51.208 621 244 20 1 604 49 627 3.25e-164 483
MS.gene35441.t1 MTR_4g052400 51.004 498 204 14 113 604 2 465 1.00e-127 384
MS.gene35441.t1 MTR_7g105430 39.604 606 284 24 1 562 37 604 2.50e-101 322
MS.gene35441.t1 MTR_3g051430 25.445 562 299 13 2 513 54 545 6.12e-34 137
MS.gene35441.t1 MTR_5g009750 27.174 368 237 8 51 403 65 416 5.29e-32 131
MS.gene35441.t1 MTR_5g092610 31.188 404 225 10 2 399 45 401 5.47e-31 129
MS.gene35441.t1 MTR_8g028230 23.810 357 251 3 44 399 44 380 7.79e-24 106
MS.gene35441.t1 MTR_2g023020 34.715 193 126 0 210 402 175 367 2.43e-23 104
MS.gene35441.t1 MTR_8g028230 27.826 230 165 1 171 399 110 339 5.43e-22 100
MS.gene35441.t1 MTR_8g028230 28.571 231 162 3 171 399 37 266 7.55e-22 99.0
MS.gene35441.t1 MTR_8g028230 28.571 231 162 3 171 399 64 293 9.81e-22 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35441.t1 AT3G11590 42.008 488 253 14 1 473 45 517 1.57e-88 287
MS.gene35441.t1 AT3G11590 43.944 355 185 8 124 473 10 355 1.33e-66 224
MS.gene35441.t1 AT5G22310 31.092 476 207 15 5 469 44 409 6.03e-41 155
MS.gene35441.t1 AT1G50660 37.245 196 123 0 205 400 233 428 1.35e-35 143
MS.gene35441.t1 AT3G20350 35.841 226 133 3 212 435 215 430 5.81e-31 128
MS.gene35441.t1 AT5G41620 27.313 227 163 1 178 402 28 254 1.72e-19 92.0
MS.gene35441.t1 AT5G41620 27.313 227 163 1 178 402 70 296 2.14e-19 92.0
MS.gene35441.t1 AT5G41620 27.313 227 163 1 178 402 70 296 2.14e-19 92.0
MS.gene35441.t1 AT5G41620 27.313 227 163 1 178 402 187 413 2.30e-19 92.4
MS.gene35441.t1 AT1G64180 27.615 239 156 5 174 410 175 398 4.43e-16 82.0
MS.gene35441.t1 AT2G46250 28.218 202 126 3 177 378 152 334 3.55e-12 69.3
MS.gene35441.t1 AT2G46250 28.218 202 126 3 177 378 61 243 8.04e-12 67.8

Find 89 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATCTTCCTCTAGATTT+TGG 0.099398 2.1:+15417678 None:intergenic
GAAAAGGGCTAAAGAGATTT+TGG 0.212294 2.1:-15418038 MS.gene35441:CDS
TCAATCTATTGAATTGAATA+TGG 0.239027 2.1:-15417615 MS.gene35441:CDS
CCACTTTCTTTATCAAAATC+TGG 0.249092 2.1:+15417275 None:intergenic
CCACAATTCTTCTTGCGTTT+TGG 0.249753 2.1:+15418490 None:intergenic
GTTTCAATTGATAAAGATAT+AGG 0.289690 2.1:-15417524 MS.gene35441:CDS
TAGACTCATAATAGGCTTAT+AGG 0.291883 2.1:+15417316 None:intergenic
GAATTGATCGATTTGGTTGC+GGG 0.324724 2.1:+15418306 None:intergenic
TTTCAATTGATAAAGATATA+GGG 0.337013 2.1:-15417523 MS.gene35441:CDS
GAAAACTTGCTGCTACACTA+TGG 0.343354 2.1:-15419526 MS.gene35441:CDS
GCTTTGCATTGTTCACGTTC+TGG 0.344057 2.1:-15419590 MS.gene35441:CDS
GGAATCAATGAAAAGTAATA+AGG 0.347161 2.1:-15419468 MS.gene35441:CDS
AAGTTCAAAGTCACCTTCTA+TGG 0.349666 2.1:-15419645 MS.gene35441:CDS
GATTCCTTCTTGATCCTTGA+AGG 0.350174 2.1:+15419485 None:intergenic
TTTGTTGATCCCTGCTTTAG+AGG 0.354642 2.1:-15419173 MS.gene35441:CDS
CATGAAGATTTCCAAAGAAA+TGG 0.357190 2.1:-15418110 MS.gene35441:CDS
ATACTCAATATTGTTCTGAT+TGG 0.361199 2.1:+15418267 None:intergenic
TGGTCTCTTAGACTCATAAT+AGG 0.362914 2.1:+15417308 None:intergenic
CTTGAATGAATTGATCGATT+TGG 0.380451 2.1:+15418299 None:intergenic
CAAAATCTGGAAATGATATA+TGG 0.386837 2.1:+15417288 None:intergenic
AATTCGAGAAGAAGTTGAAA+AGG 0.392229 2.1:-15417936 MS.gene35441:CDS
AGTATCAATTTGAAGAGAAA+AGG 0.393878 2.1:-15417844 MS.gene35441:CDS
TCAATGATTTAACTCCTTCA+AGG 0.406907 2.1:-15419499 MS.gene35441:CDS
TGCTTTAGAGGCATGGATGC+TGG 0.415340 2.1:-15419161 MS.gene35441:CDS
AGAGGAAAATGCCCTGGCTT+TGG 0.424601 2.1:-15417216 MS.gene35441:CDS
TCTATCTTCTCCAACACCTT+TGG 0.426390 2.1:+15417994 None:intergenic
TAGTAATTTACCTCTGAGAA+AGG 0.428067 2.1:+15419374 None:intergenic
TGGCTTCTGAGAGCTTCATA+TGG 0.428417 2.1:+15417867 None:intergenic
TTTCTCTTCAAATTGATACT+TGG 0.434157 2.1:+15417847 None:intergenic
GGAAAATGCCCTGGCTTTGG+AGG 0.439312 2.1:-15417213 MS.gene35441:CDS
TGAGTTTGAGGTACATTGAT+GGG 0.446281 2.1:-15417244 MS.gene35441:CDS
CACAAGTAGAGGAAATGAAA+AGG 0.450688 2.1:-15417970 MS.gene35441:CDS
ATTGTCGAAAGAACACGAAA+TGG 0.459265 2.1:-15418062 MS.gene35441:CDS
AGAACACGAAATGGAGAAAA+GGG 0.459626 2.1:-15418053 MS.gene35441:CDS
AAGAACACGAAATGGAGAAA+AGG 0.461476 2.1:-15418054 MS.gene35441:CDS
ACAAAAGGTATTGAAGTTGA+TGG 0.461588 2.1:-15419236 MS.gene35441:CDS
AGCATCCATGCCTCTAAAGC+AGG 0.462938 2.1:+15419163 None:intergenic
TATCATGTCCCTCCAAAGCC+AGG 0.466896 2.1:+15417204 None:intergenic
GTTATGTAGATCAGTGTTGT+TGG 0.468843 2.1:-15419426 MS.gene35441:CDS
ACCACAAAAGTTAGATCCAT+TGG 0.471476 2.1:-15419402 MS.gene35441:CDS
TTGAAGAGGAAAAGATTGCT+TGG 0.472224 2.1:-15418231 MS.gene35441:CDS
AAGGTAAAGCAGAGAACAAA+AGG 0.472992 2.1:-15419251 MS.gene35441:CDS
GAAGAATTGTGGTAAATGTA+AGG 0.474371 2.1:-15418479 MS.gene35441:CDS
AGAAATAAAGAAGAAGAGAA+AGG 0.475340 2.1:-15417779 MS.gene35441:CDS
TGGAGTCAAGAACCGTCTTA+AGG 0.477784 2.1:-15418455 MS.gene35441:CDS
AGAGGAAATGAAAAGGGAAT+CGG 0.478419 2.1:-15417963 MS.gene35441:CDS
GATGATATTGATGTTAATCC+AGG 0.478815 2.1:-15417755 MS.gene35441:CDS
TTGAGTTTGAGGTACATTGA+TGG 0.490634 2.1:-15417245 MS.gene35441:CDS
TTATGTAGATCAGTGTTGTT+GGG 0.494159 2.1:-15419425 MS.gene35441:CDS
TGATCCCTGCTTTAGAGGCA+TGG 0.494678 2.1:-15419168 MS.gene35441:CDS
GTATCAATTTGAAGAGAAAA+GGG 0.497216 2.1:-15417843 MS.gene35441:CDS
ATTTCTTTCTTCTCTTTCAA+AGG 0.498272 2.1:+15419563 None:intergenic
TTGCAATGCTGATTTAATAG+AGG 0.498526 2.1:-15419138 MS.gene35441:intron
TCCTTGAGTTTCTTAAGACC+TGG 0.504987 2.1:+15417737 None:intergenic
TACATTGAAGAAGCTTCTAA+AGG 0.509779 2.1:-15418413 MS.gene35441:CDS
AATTGTGGTAAATGTAAGGT+TGG 0.511853 2.1:-15418475 MS.gene35441:CDS
TGATGATGAGTTGCCATAGA+AGG 0.520762 2.1:+15419632 None:intergenic
TGAATTGATCGATTTGGTTG+CGG 0.523191 2.1:+15418305 None:intergenic
GAGCAGCATGCCCCTCATCT+TGG 0.529885 2.1:-15418353 MS.gene35441:CDS
ACAAGTAGAGGAAATGAAAA+GGG 0.531779 2.1:-15417969 MS.gene35441:CDS
AGATGATAAAGAAGAAAATG+AGG 0.536416 2.1:-15417345 MS.gene35441:CDS
AAAACTTGCTGCTACACTAT+GGG 0.545934 2.1:-15419525 MS.gene35441:CDS
AACTCCTTCAAGGATCAAGA+AGG 0.548905 2.1:-15419489 MS.gene35441:CDS
TTTGGAATTCCAAAATCTAG+AGG 0.564517 2.1:-15417687 MS.gene35441:CDS
GGGAAGTATTTGCTTCAACA+AGG 0.569289 2.1:-15417480 MS.gene35441:CDS
TTGCATTTGAGAAGAAGCTA+AGG 0.573006 2.1:-15418153 MS.gene35441:CDS
CCAAAACGCAAGAAGAATTG+TGG 0.584387 2.1:-15418490 MS.gene35441:CDS
GGAAGTATTTGCTTCAACAA+GGG 0.586753 2.1:-15417479 MS.gene35441:CDS
ACAATACACCAGCACCTATG+TGG 0.587966 2.1:-15419673 MS.gene35441:CDS
GATGATAAAGAAGAAAATGA+GGG 0.588141 2.1:-15417344 MS.gene35441:CDS
GATGAATTAGCCAAAGGTGT+TGG 0.590367 2.1:-15418004 MS.gene35441:CDS
AGAAGATAGATCACAAGTAG+AGG 0.595577 2.1:-15417981 MS.gene35441:CDS
GAGTTTGAGGTACATTGATG+GGG 0.599467 2.1:-15417243 MS.gene35441:CDS
CGTTACTCATAGCCAAGATG+AGG 0.599564 2.1:+15418341 None:intergenic
GAAAATGCCCTGGCTTTGGA+GGG 0.600285 2.1:-15417212 MS.gene35441:CDS
GGAAGCAGAGGAAAATGCCC+TGG 0.603191 2.1:-15417222 MS.gene35441:CDS
TCTGAGAAAGGACTAACCAA+TGG 0.604769 2.1:+15419386 None:intergenic
AGGAAAGAGACAAAGTTGAG+AGG 0.605019 2.1:-15419448 MS.gene35441:CDS
TCCAGGTCTTAAGAAACTCA+AGG 0.612971 2.1:-15417738 MS.gene35441:CDS
GTTACTCATAGCCAAGATGA+GGG 0.620249 2.1:+15418342 None:intergenic
GTACATTGATGGGGAAGCAG+AGG 0.621003 2.1:-15417234 MS.gene35441:CDS
GCATCCATGCCTCTAAAGCA+GGG 0.626695 2.1:+15419164 None:intergenic
CATTTGAGAAGAAGCTAAGG+AGG 0.627117 2.1:-15418150 MS.gene35441:CDS
ATCATGTCCCTCCAAAGCCA+GGG 0.630793 2.1:+15417205 None:intergenic
GTTTGTGATGAATTAGCCAA+AGG 0.638876 2.1:-15418010 MS.gene35441:CDS
ATTGGTTAGTCCTTTCTCAG+AGG 0.645866 2.1:-15419384 MS.gene35441:intron
CGTCTTAAGGAAGCTAAAAG+CGG 0.687525 2.1:-15418442 MS.gene35441:CDS
TTACTCATAGCCAAGATGAG+GGG 0.694561 2.1:+15418343 None:intergenic
AGAAAGAGAGAAGATTCGCG+AGG 0.695830 2.1:-15418200 MS.gene35441:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATCAATTAGAAATT+TGG - chr2.1:15417766-15417785 MS.gene35441:CDS 10.0%
!! TTAGTTAATCTAATAAAAAA+TGG + chr2.1:15417830-15417849 None:intergenic 10.0%
!!! AAATCAATTGAATTTATTTT+TGG - chr2.1:15419487-15419506 MS.gene35441:CDS 10.0%
!!! TTTTTTTACAAATATGATTA+AGG - chr2.1:15417597-15417616 MS.gene35441:CDS 10.0%
!! ATCATATTTGTAAAAAAAAC+AGG + chr2.1:15417595-15417614 None:intergenic 15.0%
!! TTTCAATTGATAAAGATATA+GGG - chr2.1:15419344-15419363 MS.gene35441:intron 15.0%
!!! CATCTATACTTATTTATTTT+TGG - chr2.1:15418297-15418316 MS.gene35441:CDS 15.0%
!! AATAAACTTTGTTAGTTCAA+TGG - chr2.1:15417557-15417576 MS.gene35441:CDS 20.0%
!! GTTTCAATTGATAAAGATAT+AGG - chr2.1:15419343-15419362 MS.gene35441:intron 20.0%
!! TAATATGTTAAGTGTATGTT+TGG + chr2.1:15418063-15418082 None:intergenic 20.0%
!! TACAAATAGTACTAAAAAGA+AGG - chr2.1:15419414-15419433 MS.gene35441:CDS 20.0%
!! TCAATCTATTGAATTGAATA+TGG - chr2.1:15419252-15419271 MS.gene35441:intron 20.0%
!!! CTATTTGAACAAAACATTTT+TGG - chr2.1:15419162-15419181 MS.gene35441:CDS 20.0%
!!! TACTTATTTATTTTTGGTCA+CGG - chr2.1:15418303-15418322 MS.gene35441:CDS 20.0%
! AGAAATAAAGAAGAAGAGAA+AGG - chr2.1:15419088-15419107 MS.gene35441:intron 25.0%
! AGATGATAAAGAAGAAAATG+AGG - chr2.1:15419522-15419541 MS.gene35441:CDS 25.0%
! AGTATCAATTTGAAGAGAAA+AGG - chr2.1:15419023-15419042 MS.gene35441:intron 25.0%
! ATACTCAATATTGTTCTGAT+TGG + chr2.1:15418603-15418622 None:intergenic 25.0%
! ATGACAAAAAAAGTTACAAG+TGG - chr2.1:15419278-15419297 MS.gene35441:intron 25.0%
! ATTTCTTTCTTCTCTTTCAA+AGG + chr2.1:15417307-15417326 None:intergenic 25.0%
! CAAAATCTGGAAATGATATA+TGG + chr2.1:15419582-15419601 None:intergenic 25.0%
! GATGATAAAGAAGAAAATGA+GGG - chr2.1:15419523-15419542 MS.gene35441:CDS 25.0%
! GGAATCAATGAAAAGTAATA+AGG - chr2.1:15417399-15417418 MS.gene35441:CDS 25.0%
! GTATCAATTTGAAGAGAAAA+GGG - chr2.1:15419024-15419043 MS.gene35441:intron 25.0%
! TTGAGAAGTGAAAAGTAAAA+TGG + chr2.1:15418235-15418254 None:intergenic 25.0%
! TTTCTCTTCAAATTGATACT+TGG + chr2.1:15419023-15419042 None:intergenic 25.0%
!! TTCTTTCGACAATTTTGAAT+AGG + chr2.1:15418798-15418817 None:intergenic 25.0%
!! TTTTATGTTCTCCATTTCTT+TGG + chr2.1:15418771-15418790 None:intergenic 25.0%
!!! AGAAGATCTTTTAAAGATTG+GGG - chr2.1:15419367-15419386 MS.gene35441:intron 25.0%
!!! GAGAAGATCTTTTAAAGATT+GGG - chr2.1:15419366-15419385 MS.gene35441:intron 25.0%
AATTCGAGAAGAAGTTGAAA+AGG - chr2.1:15418931-15418950 MS.gene35441:intron 30.0%
AATTGTGGTAAATGTAAGGT+TGG - chr2.1:15418392-15418411 MS.gene35441:CDS 30.0%
ACAAGTAGAGGAAATGAAAA+GGG - chr2.1:15418898-15418917 MS.gene35441:intron 30.0%
ACTAAAAAGAAGGACTTTGA+TGG - chr2.1:15419424-15419443 MS.gene35441:CDS 30.0%
CATGAAGATTTCCAAAGAAA+TGG - chr2.1:15418757-15418776 MS.gene35441:intron 30.0%
CCACTTTCTTTATCAAAATC+TGG + chr2.1:15419595-15419614 None:intergenic 30.0%
CTTGAATGAATTGATCGATT+TGG + chr2.1:15418571-15418590 None:intergenic 30.0%
GAAGAATTGTGGTAAATGTA+AGG - chr2.1:15418388-15418407 MS.gene35441:CDS 30.0%
GATGATATTGATGTTAATCC+AGG - chr2.1:15419112-15419131 MS.gene35441:intron 30.0%
GTATCACTATTCTTGATAGA+AGG + chr2.1:15418260-15418279 None:intergenic 30.0%
TACATTGAAGAAGCTTCTAA+AGG - chr2.1:15418454-15418473 MS.gene35441:CDS 30.0%
TAGACTCATAATAGGCTTAT+AGG + chr2.1:15419554-15419573 None:intergenic 30.0%
TCAATGATTTAACTCCTTCA+AGG - chr2.1:15417368-15417387 MS.gene35441:CDS 30.0%
TTAGAGCTTCAACAAAATCA+CGG - chr2.1:15418005-15418024 MS.gene35441:CDS 30.0%
! CATTATCTTCCTCTAGATTT+TGG + chr2.1:15419192-15419211 None:intergenic 30.0%
! TAGTAATTTACCTCTGAGAA+AGG + chr2.1:15417496-15417515 None:intergenic 30.0%
! TTATGTAGATCAGTGTTGTT+GGG - chr2.1:15417442-15417461 MS.gene35441:CDS 30.0%
! TTTGGAATTCCAAAATCTAG+AGG - chr2.1:15419180-15419199 MS.gene35441:CDS 30.0%
!! ACAAAAGGTATTGAAGTTGA+TGG - chr2.1:15417631-15417650 MS.gene35441:CDS 30.0%
!! CCAGATTTTGATAAAGAAAG+TGG - chr2.1:15419592-15419611 MS.gene35441:CDS 30.0%
!! GGAGAAGATCTTTTAAAGAT+TGG - chr2.1:15419365-15419384 MS.gene35441:intron 30.0%
!! TTGCAATGCTGATTTAATAG+AGG - chr2.1:15417729-15417748 MS.gene35441:CDS 30.0%
!! TTTGAACTTGTTTTCCACAT+AGG + chr2.1:15417211-15417230 None:intergenic 30.0%
!!! TGAGAATATTCCACTTTTTG+AGG - chr2.1:15419312-15419331 MS.gene35441:intron 30.0%
AAGAACACGAAATGGAGAAA+AGG - chr2.1:15418813-15418832 MS.gene35441:intron 35.0%
AAGGTAAAGCAGAGAACAAA+AGG - chr2.1:15417616-15417635 MS.gene35441:CDS 35.0%
AAGTTCAAAGTCACCTTCTA+TGG - chr2.1:15417222-15417241 MS.gene35441:CDS 35.0%
ACCACAAAAGTTAGATCCAT+TGG - chr2.1:15417465-15417484 MS.gene35441:CDS 35.0%
AGAACACGAAATGGAGAAAA+GGG - chr2.1:15418814-15418833 MS.gene35441:intron 35.0%
AGAAGATAGATCACAAGTAG+AGG - chr2.1:15418886-15418905 MS.gene35441:intron 35.0%
AGAGGAAATGAAAAGGGAAT+CGG - chr2.1:15418904-15418923 MS.gene35441:intron 35.0%
ATTGTCGAAAGAACACGAAA+TGG - chr2.1:15418805-15418824 MS.gene35441:intron 35.0%
CACAAGTAGAGGAAATGAAA+AGG - chr2.1:15418897-15418916 MS.gene35441:intron 35.0%
GTTATGTAGATCAGTGTTGT+TGG - chr2.1:15417441-15417460 MS.gene35441:CDS 35.0%
GTTTGTGATGAATTAGCCAA+AGG - chr2.1:15418857-15418876 MS.gene35441:intron 35.0%
TGAATTTGGCAAAAACACGT+TGG + chr2.1:15418035-15418054 None:intergenic 35.0%
TGGTCTCTTAGACTCATAAT+AGG + chr2.1:15419562-15419581 None:intergenic 35.0%
TGTTAAGTGTATGTTTGGAC+CGG + chr2.1:15418058-15418077 None:intergenic 35.0%
TTGAAGAGGAAAAGATTGCT+TGG - chr2.1:15418636-15418655 MS.gene35441:intron 35.0%
TTGCATTTGAGAAGAAGCTA+AGG - chr2.1:15418714-15418733 MS.gene35441:intron 35.0%
! ACCAATGGATCTAACTTTTG+TGG + chr2.1:15417469-15417488 None:intergenic 35.0%
! ACTCTTTTTGCCTCAAAAAG+TGG + chr2.1:15419325-15419344 None:intergenic 35.0%
! GAAAAGGGCTAAAGAGATTT+TGG - chr2.1:15418829-15418848 MS.gene35441:intron 35.0%
! TGAGTTTGAGGTACATTGAT+GGG - chr2.1:15419623-15419642 MS.gene35441:CDS 35.0%
! TTGAGTTTGAGGTACATTGA+TGG - chr2.1:15419622-15419641 MS.gene35441:CDS 35.0%
! TTTGATTGTCACACGGTTTT+TGG - chr2.1:15417923-15417942 MS.gene35441:CDS 35.0%
!! AAAACTTGCTGCTACACTAT+GGG - chr2.1:15417342-15417361 MS.gene35441:CDS 35.0%
!! AGTTTTGATCAGCTTGAAAG+TGG - chr2.1:15419463-15419482 MS.gene35441:CDS 35.0%
!! GGAAGTATTTGCTTCAACAA+GGG - chr2.1:15419388-15419407 MS.gene35441:CDS 35.0%
!! TCTCATGAAGCATTTTGAAG+AGG - chr2.1:15418622-15418641 MS.gene35441:intron 35.0%
!! TGAATTGATCGATTTGGTTG+CGG + chr2.1:15418565-15418584 None:intergenic 35.0%
!! TGTTGACTTTGATTGTCACA+CGG - chr2.1:15417916-15417935 MS.gene35441:CDS 35.0%
!!! AAGCTGTGTTTTTTGTAGCA+TGG + chr2.1:15417261-15417280 None:intergenic 35.0%
!!! GTGGTAAACTTTTGAGTTTG+AGG - chr2.1:15419611-15419630 MS.gene35441:CDS 35.0%
AACTCCTTCAAGGATCAAGA+AGG - chr2.1:15417378-15417397 MS.gene35441:CDS 40.0%
ACTGCATCAGTGCATACATA+AGG + chr2.1:15418186-15418205 None:intergenic 40.0%
AGGAAAGAGACAAAGTTGAG+AGG - chr2.1:15417419-15417438 MS.gene35441:CDS 40.0%
CATTTGAGAAGAAGCTAAGG+AGG - chr2.1:15418717-15418736 MS.gene35441:intron 40.0%
CCAAAACGCAAGAAGAATTG+TGG - chr2.1:15418377-15418396 MS.gene35441:CDS 40.0%
CGTCTTAAGGAAGCTAAAAG+CGG - chr2.1:15418425-15418444 MS.gene35441:CDS 40.0%
GATTCCTTCTTGATCCTTGA+AGG + chr2.1:15417385-15417404 None:intergenic 40.0%
GTTACTCATAGCCAAGATGA+GGG + chr2.1:15418528-15418547 None:intergenic 40.0%
TATGTTTGGACCGGTGAATT+TGG + chr2.1:15418049-15418068 None:intergenic 40.0%
TCCAGGTCTTAAGAAACTCA+AGG - chr2.1:15419129-15419148 MS.gene35441:intron 40.0%
TCCTTGAGTTTCTTAAGACC+TGG + chr2.1:15419133-15419152 None:intergenic 40.0%
TCTATCTTCTCCAACACCTT+TGG + chr2.1:15418876-15418895 None:intergenic 40.0%
TCTGAGAAAGGACTAACCAA+TGG + chr2.1:15417484-15417503 None:intergenic 40.0%
TTACTCATAGCCAAGATGAG+GGG + chr2.1:15418527-15418546 None:intergenic 40.0%
TTTGTTGATCCCTGCTTTAG+AGG - chr2.1:15417694-15417713 MS.gene35441:CDS 40.0%
! ATTGGTTAGTCCTTTCTCAG+AGG - chr2.1:15417483-15417502 MS.gene35441:CDS 40.0%
! CCACAATTCTTCTTGCGTTT+TGG + chr2.1:15418380-15418399 None:intergenic 40.0%
! GAGTTTGAGGTACATTGATG+GGG - chr2.1:15419624-15419643 MS.gene35441:CDS 40.0%
! GATGAATTAGCCAAAGGTGT+TGG - chr2.1:15418863-15418882 MS.gene35441:intron 40.0%
! TGATGATGAGTTGCCATAGA+AGG + chr2.1:15417238-15417257 None:intergenic 40.0%
!! CGTGTTTTTGCCAAATTCAC+CGG - chr2.1:15418036-15418055 MS.gene35441:CDS 40.0%
!! GAAAACTTGCTGCTACACTA+TGG - chr2.1:15417341-15417360 MS.gene35441:CDS 40.0%
!! GAATTGATCGATTTGGTTGC+GGG + chr2.1:15418564-15418583 None:intergenic 40.0%
!! GGGAAGTATTTGCTTCAACA+AGG - chr2.1:15419387-15419406 MS.gene35441:CDS 40.0%
!!! ATTTTTGGTCACGGTTGAGA+AGG - chr2.1:15418312-15418331 MS.gene35441:CDS 40.0%
!!! CGCTTTTAGCTTCCTTAAGA+CGG + chr2.1:15418427-15418446 None:intergenic 40.0%
ACAATACACCAGCACCTATG+TGG - chr2.1:15417194-15417213 MS.gene35441:CDS 45.0%
AGAAAGAGAGAAGATTCGCG+AGG - chr2.1:15418667-15418686 MS.gene35441:intron 45.0%
CGTTACTCATAGCCAAGATG+AGG + chr2.1:15418529-15418548 None:intergenic 45.0%
GCTTTGCATTGTTCACGTTC+TGG - chr2.1:15417277-15417296 MS.gene35441:CDS 45.0%
TGGAGTCAAGAACCGTCTTA+AGG - chr2.1:15418412-15418431 MS.gene35441:CDS 45.0%
! TGGCTTCTGAGAGCTTCATA+TGG + chr2.1:15419003-15419022 None:intergenic 45.0%
!! CTTGTTTTCCACATAGGTGC+TGG + chr2.1:15417205-15417224 None:intergenic 45.0%
AGAGGAAAATGCCCTGGCTT+TGG - chr2.1:15419651-15419670 MS.gene35441:CDS 50.0%
ATCATGTCCCTCCAAAGCCA+GGG + chr2.1:15419665-15419684 None:intergenic 50.0%
GTACATTGATGGGGAAGCAG+AGG - chr2.1:15419633-15419652 MS.gene35441:CDS 50.0%
TATCATGTCCCTCCAAAGCC+AGG + chr2.1:15419666-15419685 None:intergenic 50.0%
!! AGCATCCATGCCTCTAAAGC+AGG + chr2.1:15417707-15417726 None:intergenic 50.0%
!! GAAAATGCCCTGGCTTTGGA+GGG - chr2.1:15419655-15419674 MS.gene35441:CDS 50.0%
!! GCATCCATGCCTCTAAAGCA+GGG + chr2.1:15417706-15417725 None:intergenic 50.0%
!! TGATCCCTGCTTTAGAGGCA+TGG - chr2.1:15417699-15417718 MS.gene35441:CDS 50.0%
!! TGCTTTAGAGGCATGGATGC+TGG - chr2.1:15417706-15417725 MS.gene35441:CDS 50.0%
GGAAGCAGAGGAAAATGCCC+TGG - chr2.1:15419645-15419664 MS.gene35441:CDS 55.0%
!! GGAAAATGCCCTGGCTTTGG+AGG - chr2.1:15419654-15419673 MS.gene35441:CDS 55.0%
GAGCAGCATGCCCCTCATCT+TGG - chr2.1:15418514-15418533 MS.gene35441:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 15417175 15419714 15417175 ID=MS.gene35441
chr2.1 mRNA 15417175 15419714 15417175 ID=MS.gene35441.t1;Parent=MS.gene35441
chr2.1 exon 15419385 15419714 15419385 ID=MS.gene35441.t1.exon1;Parent=MS.gene35441.t1
chr2.1 CDS 15419385 15419714 15419385 ID=cds.MS.gene35441.t1;Parent=MS.gene35441.t1
chr2.1 exon 15419139 15419270 15419139 ID=MS.gene35441.t1.exon2;Parent=MS.gene35441.t1
chr2.1 CDS 15419139 15419270 15419139 ID=cds.MS.gene35441.t1;Parent=MS.gene35441.t1
chr2.1 exon 15417175 15418527 15417175 ID=MS.gene35441.t1.exon3;Parent=MS.gene35441.t1
chr2.1 CDS 15417175 15418527 15417175 ID=cds.MS.gene35441.t1;Parent=MS.gene35441.t1
Gene Sequence

>MS.gene35441

ATGGGGAAGAAAAGTGGGTACAATACACCAGCACCTATGTGGAAAACAAGTTCAAAGTCACCTTCTATGGCAACTCATCATCACCATGCTACAAAAAACACAGCTTTGCATTGTTCACGTTCTGGATTACCTTTGAAAGAGAAGAAAGAAATTTCTGTGTCTGCTAGAAAACTTGCTGCTACACTATGGGAAATCAATGATTTAACTCCTTCAAGGATCAAGAAGGAATCAATGAAAAGTAATAAGGAAAGAGACAAAGTTGAGAGGTTATGTAGATCAGTGTTGTTGGGACCACAAAAGTTAGATCCATTGGTTAGTCCTTTCTCAGAGGTAAATTACTAAATTCATATAAAAGTTTTTAATTTTTATTTTTTCATTTGTGAATAAACTTTGTTAGTTCAATGGTGAAAATGAAATCCTGTTTTTTTTACAAATATGATTAAGGTAAAGCAGAGAACAAAAGGTATTGAAGTTGATGGCTGCAAAAGAAATGTGTCAGATTTATCTCAACAATTTCACTTTGTTGATCCCTGCTTTAGAGGCATGGATGCTGGTTGCAATGCTGATTTAATAGAGGTAAGTTTTGTAATGAATATAATCAATTAGAAATTTGGTACACATATTTCATTATGCTTAATCATCATATACTATACCATTTTTTATTAGATTAACTAATGATCAACATGATGATATGTTACAATAATAAAAATAGACACAAATTAGTTGTGAAGTTTTAAAATCTGTTGACTTTGATTGTCACACGGTTTTTGGTTGACAATGATACAATAGAATCACGTTGAACTACTGTGATTTTGACAAAAAGCTACAATTTAGAGCTTCAACAAAATCACGGCGTGCCAACGTGTTTTTGCCAAATTCACCGGTCCAAACATACACTTAACATATTATTATATATAAAAGTTAGTTATAATAGTGTTCAGTCAAGAAAAAAGTTAGTTATATTAGTTTGTTACACTAGTTAGTTGTTCTTCTTATTGACTATATAAACCTTATGTATGCACTGATGCAGTTCATTCTCTCATTATCAATATAATTTCCATTTTACTTTTCACTTCTCAATGCCTTCTATCAAGAATAGTGATACATATTAGATTATGATTTCATCTATACTTATTTATTTTTGGTCACGGTTGAGAAGGATCAAGTTAAACTATGTTGAAATGCAGAATGTTAGCAATAAGCCAAAACGCAAGAAGAATTGTGGTAAATGTAAGGTTGGAGTCAAGAACCGTCTTAAGGAAGCTAAAAGCGGCGTATCTACATTGAAGAAGCTTCTAAAGGTGTTAAGTCAAATTGTCGTTGAAGAGAAGCATTCGTTGAGCAGCATGCCCCTCATCTTGGCTATGAGTAACGAGCTTGATCTCGCCCGCAACCAAATCGATCAATTCATTCAAGAACAAAGCTCCAATCAGAACAATATTGAGTATCTCATGAAGCATTTTGAAGAGGAAAAGATTGCTTGGCAAAGAAGAGAAAGAGAGAAGATTCGCGAGGTGACAATGAGCATAGCGCAAGAGCTTGCATTTGAGAAGAAGCTAAGGAGGCAAACTGAGAGACTGAACATGAAGATTTCCAAAGAAATGGAGAACATAAAAAATTCCTATTCAAAATTGTCGAAAGAACACGAAATGGAGAAAAGGGCTAAAGAGATTTTGGAGCAAGTTTGTGATGAATTAGCCAAAGGTGTTGGAGAAGATAGATCACAAGTAGAGGAAATGAAAAGGGAATCGGAGAAAATTCGAGAAGAAGTTGAAAAGGAGAGAGAAATGCTTCAGTTAGCAGACATTTTGCGCGAAGAACGAGTCCATATGAAGCTCTCAGAAGCCAAGTATCAATTTGAAGAGAAAAGGGCAGTGCTAGAAATTCTAAGAAATGAGCTTGAGAACTTTATAAGAAATAAAGAAGAAGAGAAAGGTGATGATATTGATGTTAATCCAGGTCTTAAGAAACTCAAGGATCTTGAATTCTATTTGAACAAAACATTTTTGGAATTCCAAAATCTAGAGGAAGATAATGATTCAATAGAGCATGAAGATGAGTCAGTTGAGAGTGATCTTCAATCTATTGAATTGAATATGGACAATGACAAAAAAAGTTACAAGTGGAATTATTCTTGTGAGAATATTCCACTTTTTGAGGCAAAAAGAGTTTCAATTGATAAAGATATAGGGAGAAGATCTTTTAAAGATTGGGGAAGTATTTGCTTCAACAAGGGAACTACAAATAGTACTAAAAAGAAGGACTTTGATGGTATAAATATTCAAGAAAGTTTTGATCAGCTTGAAAGTGGAAAATCAATTGAATTTATTTTTGGAGATGAAATACAAGATGATAAAGAAGAAAATGAGGGTTATACCTATAAGCCTATTATGAGTCTAAGAGACCATATATCATTTCCAGATTTTGATAAAGAAAGTGGTAAACTTTTGAGTTTGAGGTACATTGATGGGGAAGCAGAGGAAAATGCCCTGGCTTTGGAGGGACATGATATGAAGAAAGATTGTGCACGAAGAAAATAA
Protein sequence

>MS.gene35441.t1

MGKKSGYNTPAPMWKTSSKSPSMATHHHHATKNTALHCSRSGLPLKEKKEISVSARKLAATLWEINDLTPSRIKKESMKSNKERDKVERLCRSVLLGPQKLDPLVSPFSEVKQRTKGIEVDGCKRNVSDLSQQFHFVDPCFRGMDAGCNADLIENVSNKPKRKKNCGKCKVGVKNRLKEAKSGVSTLKKLLKVLSQIVVEEKHSLSSMPLILAMSNELDLARNQIDQFIQEQSSNQNNIEYLMKHFEEEKIAWQRREREKIREVTMSIAQELAFEKKLRRQTERLNMKISKEMENIKNSYSKLSKEHEMEKRAKEILEQVCDELAKGVGEDRSQVEEMKRESEKIREEVEKEREMLQLADILREERVHMKLSEAKYQFEEKRAVLEILRNELENFIRNKEEEKGDDIDVNPGLKKLKDLEFYLNKTFLEFQNLEEDNDSIEHEDESVESDLQSIELNMDNDKKSYKWNYSCENIPLFEAKRVSIDKDIGRRSFKDWGSICFNKGTTNSTKKKDFDGINIQESFDQLESGKSIEFIFGDEIQDDKEENEGYTYKPIMSLRDHISFPDFDKESGKLLSLRYIDGEAEENALALEGHDMKKDCARRK