AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35771


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35771.t1 MTR_2g089120 92.996 514 35 1 49 562 55 567 0.0 1003
MS.gene35771.t1 MTR_2g089130 84.344 511 78 2 49 559 55 563 0.0 915
MS.gene35771.t1 MTR_4g045810 40.081 494 277 7 56 539 74 558 2.37e-118 362
MS.gene35771.t1 MTR_2g065450 38.889 504 295 6 65 559 90 589 1.44e-109 340
MS.gene35771.t1 MTR_4g081460 36.542 509 301 8 46 539 38 539 6.65e-108 334
MS.gene35771.t1 MTR_2g064425 37.725 501 304 5 65 559 87 585 8.29e-107 332
MS.gene35771.t1 MTR_4g092010 35.404 483 295 7 83 554 78 554 2.31e-104 325
MS.gene35771.t1 MTR_4g092020 36.722 482 294 6 83 555 87 566 2.48e-101 318
MS.gene35771.t1 MTR_2g064425 36.327 501 296 6 65 559 87 570 1.25e-97 308
MS.gene35771.t1 MTR_6g008560 34.669 499 304 8 76 559 65 556 1.94e-97 307
MS.gene35771.t1 MTR_8g057020 33.781 521 333 7 49 559 70 588 3.93e-97 307
MS.gene35771.t1 MTR_6g039440 32.939 507 325 8 65 559 49 552 2.61e-96 304
MS.gene35771.t1 MTR_3g052120 33.533 501 319 6 67 554 13 512 5.72e-96 302
MS.gene35771.t1 MTR_4g048460 34.674 522 322 10 52 559 44 560 5.33e-95 301
MS.gene35771.t1 MTR_2g010960 33.135 504 324 4 64 554 14 517 1.82e-94 298
MS.gene35771.t1 MTR_6g064980 33.981 515 320 7 56 554 2 512 7.62e-94 296
MS.gene35771.t1 MTR_5g062230 33.333 534 330 10 45 559 26 552 6.97e-93 295
MS.gene35771.t1 MTR_3g464190 34.792 480 290 7 76 540 64 535 3.49e-91 291
MS.gene35771.t1 MTR_3g063120 34.615 494 302 7 82 558 3 492 4.85e-91 288
MS.gene35771.t1 MTR_3g063140 33.591 518 326 9 56 558 2 516 6.62e-91 289
MS.gene35771.t1 MTR_7g010710 36.066 488 291 9 64 539 54 532 1.13e-89 287
MS.gene35771.t1 MTR_3g465090 34.146 492 310 7 79 557 25 515 1.42e-89 285
MS.gene35771.t1 MTR_3g063170 31.881 505 330 5 67 558 13 516 1.43e-89 285
MS.gene35771.t1 MTR_2g082010 34.325 504 312 9 66 554 63 562 3.44e-89 286
MS.gene35771.t1 MTR_5g094620 35.031 491 288 9 79 559 67 536 7.17e-89 284
MS.gene35771.t1 MTR_5g073260 33.465 505 305 9 75 559 58 551 6.00e-88 282
MS.gene35771.t1 MTR_2g081980 32.246 521 332 10 51 554 35 551 1.57e-86 279
MS.gene35771.t1 MTR_5g073200 34.257 505 303 10 59 543 35 530 1.43e-85 276
MS.gene35771.t1 MTR_8g007515 33.398 512 306 12 56 543 37 537 1.75e-83 271
MS.gene35771.t1 MTR_4g048460 35.545 422 261 5 52 464 44 463 5.02e-81 262
MS.gene35771.t1 MTR_6g065040 35.910 401 245 6 150 542 2 398 5.94e-80 257
MS.gene35771.t1 MTR_6g008560 34.158 404 257 6 161 559 1 400 7.18e-79 254
MS.gene35771.t1 MTR_2g082060 32.765 528 314 13 52 554 36 547 3.14e-78 257
MS.gene35771.t1 MTR_2g064425 41.121 321 185 2 65 381 87 407 1.11e-72 239
MS.gene35771.t1 MTR_4g019550 31.138 501 312 11 77 558 70 556 6.84e-66 224
MS.gene35771.t1 MTR_2g082050 30.165 484 281 11 83 560 27 459 2.75e-64 217
MS.gene35771.t1 MTR_2g064425 38.941 321 177 3 65 381 87 392 1.07e-63 215
MS.gene35771.t1 MTR_3g063160 32.180 289 183 5 56 333 2 288 1.12e-39 146
MS.gene35771.t1 MTR_2g064295 25.911 494 330 12 78 539 252 741 3.36e-39 153
MS.gene35771.t1 MTR_2g012870 26.654 529 340 16 56 548 229 745 2.06e-37 148
MS.gene35771.t1 MTR_3g058160 25.050 503 338 13 83 553 66 561 7.70e-37 144
MS.gene35771.t1 MTR_3g058160 25.050 503 338 13 83 553 277 772 3.02e-36 144
MS.gene35771.t1 MTR_3g058160 25.050 503 338 13 83 553 257 752 3.38e-36 144
MS.gene35771.t1 MTR_3g058160 24.701 502 341 11 83 553 270 765 3.67e-36 144
MS.gene35771.t1 MTR_2g012900 27.557 479 291 14 56 488 229 697 5.05e-36 144
MS.gene35771.t1 MTR_3g058160 24.427 524 336 14 83 553 277 793 1.96e-33 136
MS.gene35771.t1 MTR_7g050990 40.252 159 80 2 213 371 36 179 1.78e-27 118
MS.gene35771.t1 MTR_5g094530 34.343 198 92 4 175 369 5 167 5.57e-27 108
MS.gene35771.t1 MTR_5g030050 30.153 262 147 9 85 317 3 257 5.81e-20 91.3
MS.gene35771.t1 MTR_7g094970 29.167 288 160 11 85 333 211 493 2.96e-19 92.0
MS.gene35771.t1 MTR_7g011663 28.352 261 150 7 85 310 349 607 1.59e-16 83.6
MS.gene35771.t1 MTR_7g011770 27.969 261 151 7 85 310 245 503 8.87e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35771.t1 AT4G16730 40.661 514 282 7 66 559 28 538 3.91e-132 396
MS.gene35771.t1 AT4G16730 41.212 495 268 7 85 559 1 492 4.41e-131 392
MS.gene35771.t1 AT4G16740 37.795 508 284 9 73 559 67 563 1.96e-109 338
MS.gene35771.t1 AT2G24210 35.758 495 296 9 83 559 99 589 6.45e-105 328
MS.gene35771.t1 AT3G25830 36.000 500 291 11 83 559 100 593 1.40e-103 324
MS.gene35771.t1 AT3G25820 36.000 500 291 11 83 559 100 593 1.40e-103 324
MS.gene35771.t1 AT1G61680 36.345 487 300 6 75 554 86 569 1.58e-103 323
MS.gene35771.t1 AT3G25810 34.800 500 299 10 83 559 101 596 3.94e-100 315
MS.gene35771.t1 AT1G61680 35.729 487 296 7 75 554 86 562 2.37e-99 312
MS.gene35771.t1 AT5G23960 31.298 524 346 8 47 559 24 544 9.15e-86 276
MS.gene35771.t1 AT5G23960 31.369 526 345 9 47 559 24 546 1.25e-84 273
MS.gene35771.t1 AT1G70080 32.449 490 303 11 85 553 122 604 5.67e-78 258
MS.gene35771.t1 AT4G16740 39.450 327 174 6 73 381 67 387 2.87e-71 234
MS.gene35771.t1 AT3G25820 37.651 332 188 7 83 399 100 427 2.80e-70 233
MS.gene35771.t1 AT3G14490 29.617 574 373 14 7 558 30 594 1.05e-68 233
MS.gene35771.t1 AT3G29410 30.128 468 311 7 83 539 13 475 3.17e-65 221
MS.gene35771.t1 AT1G33750 30.126 478 321 7 92 559 128 602 1.00e-64 222
MS.gene35771.t1 AT3G29410 30.128 468 311 7 83 539 118 580 4.20e-64 221
MS.gene35771.t1 AT1G31950 29.268 492 329 7 83 559 119 606 6.05e-62 215
MS.gene35771.t1 AT3G14540 30.316 475 310 8 83 542 113 581 6.24e-62 214
MS.gene35771.t1 AT1G31950 29.268 492 329 7 83 559 118 605 7.29e-62 214
MS.gene35771.t1 AT4G15870 28.916 498 327 11 53 540 96 576 1.16e-59 208
MS.gene35771.t1 AT3G14520 28.481 474 320 7 83 542 116 584 3.67e-58 204
MS.gene35771.t1 AT5G44630 30.242 496 317 12 65 539 47 534 1.75e-57 202
MS.gene35771.t1 AT3G32030 26.104 521 366 7 55 560 88 604 1.79e-55 197
MS.gene35771.t1 AT4G13300 29.253 482 327 8 85 554 69 548 1.30e-54 194
MS.gene35771.t1 AT4G16740 37.748 302 164 6 73 356 67 362 1.46e-54 189
MS.gene35771.t1 AT4G16740 37.748 302 164 6 73 356 67 362 1.46e-54 189
MS.gene35771.t1 AT1G31950 31.043 393 255 5 83 463 119 507 2.04e-52 187
MS.gene35771.t1 AT3G29110 29.259 499 316 11 65 539 89 574 2.31e-52 188
MS.gene35771.t1 AT3G25820 38.433 268 146 7 83 335 100 363 2.60e-52 184
MS.gene35771.t1 AT3G25820 38.433 268 146 7 83 335 100 363 2.60e-52 184
MS.gene35771.t1 AT4G20230 27.983 461 320 7 85 535 119 577 2.93e-52 188
MS.gene35771.t1 AT2G23230 30.000 520 319 14 65 554 90 594 3.51e-52 188
MS.gene35771.t1 AT4G20230 27.983 461 320 7 85 535 131 589 3.62e-52 188
MS.gene35771.t1 AT4G13280 28.924 446 308 6 116 554 105 548 4.03e-52 187
MS.gene35771.t1 AT2G23230 30.097 515 320 14 65 554 90 589 1.08e-51 187
MS.gene35771.t1 AT3G29190 29.710 414 281 6 85 489 116 528 1.80e-51 186
MS.gene35771.t1 AT3G14540 30.886 395 253 7 83 463 113 501 1.89e-51 184
MS.gene35771.t1 AT5G48110 29.375 320 221 4 221 539 2 317 2.47e-50 177
MS.gene35771.t1 AT4G20210 27.699 491 331 10 85 558 115 598 5.00e-50 182
MS.gene35771.t1 AT1G66020 29.247 465 309 9 85 535 113 571 1.19e-49 181
MS.gene35771.t1 AT1G48800 29.645 479 311 13 83 545 118 586 2.32e-49 180
MS.gene35771.t1 AT4G20200 28.664 464 313 6 85 535 119 577 2.57e-49 180
MS.gene35771.t1 AT1G48820 27.273 484 306 12 65 540 97 542 2.04e-43 163
MS.gene35771.t1 AT1G66020 36.071 280 162 6 85 351 113 388 6.49e-43 159
MS.gene35771.t1 AT4G13280 27.578 446 284 8 116 554 105 518 1.14e-42 160
MS.gene35771.t1 AT1G79460 25.536 513 339 13 78 555 270 774 7.32e-34 137
MS.gene35771.t1 AT1G61120 26.714 423 272 7 77 471 280 692 3.51e-32 132
MS.gene35771.t1 AT4G02780 30.916 262 142 10 85 310 334 592 3.58e-18 89.0

Find 127 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATATGTCTTAAAATT+TGG 0.090930 2.1:+12892419 None:intergenic
TTATATGAGGCATCATATTT+AGG 0.175329 2.1:-12893837 MS.gene35771:CDS
ATTCCAAAAGAGTTGGTATT+TGG 0.197928 2.1:+12893628 None:intergenic
CCGGGGAAATTCTTCGACTA+TGG 0.229539 2.1:-12892271 MS.gene35771:CDS
TTTAAGACATATTTGGATAA+TGG 0.251513 2.1:-12892413 MS.gene35771:CDS
TAACCAAATACCAACTCTTT+TGG 0.266679 2.1:-12893631 MS.gene35771:CDS
TAGCATATCTTCATGTATTC+TGG 0.278972 2.1:+12892684 None:intergenic
TATATGAGGCATCATATTTA+GGG 0.283045 2.1:-12893836 MS.gene35771:CDS
ATATTTCTGCCAATTCTCTT+TGG 0.285413 2.1:+12893568 None:intergenic
ATCACTTACCAATGACATTT+GGG 0.292181 2.1:-12893871 MS.gene35771:CDS
GATGATATCTTTGACACTTA+TGG 0.293561 2.1:-12892876 MS.gene35771:CDS
TGAAGATAAGACCAAAAGTT+TGG 0.295837 2.1:-12895449 MS.gene35771:CDS
CCAATTTGCCTGCCTACTTC+AGG 0.296197 2.1:+12893735 None:intergenic
GACTTGACCACCCAAACTTT+TGG 0.297929 2.1:+12895438 None:intergenic
CATTTCTTGAAGAAGCTAAA+TGG 0.310663 2.1:-12892460 MS.gene35771:CDS
CTTCTAACCTTGCCATTCTT+AGG 0.311069 2.1:+12893688 None:intergenic
GAGAGAGCATGATGGATTAA+TGG 0.329404 2.1:-12900464 MS.gene35771:CDS
CAATTTGAATGACATGGTTC+TGG 0.331181 2.1:+12892942 None:intergenic
TTGCCACATCCCTTCAATTT+CGG 0.335451 2.1:-12895255 MS.gene35771:CDS
CTTGCCATTCTTAGGTGCTT+TGG 0.346897 2.1:+12893696 None:intergenic
AATCACTTACCAATGACATT+TGG 0.351614 2.1:-12893872 MS.gene35771:CDS
CCTGAAGTAGGCAGGCAAAT+TGG 0.353627 2.1:-12893735 MS.gene35771:CDS
ATGAAGGAAGAATACAAATA+AGG 0.356949 2.1:-12891522 MS.gene35771:CDS
TCATGAGCACGTACATGAAT+TGG 0.363518 2.1:-12900500 MS.gene35771:CDS
CCCAGGCTCTTCACTTGCTC+CGG 0.372004 2.1:-12892290 MS.gene35771:CDS
GCTGGGGATTGGTCACCATT+TGG 0.377069 2.1:-12895338 MS.gene35771:CDS
TCTATATGCAATTTCATTTG+TGG 0.378965 2.1:+12892644 None:intergenic
GACCAACGGAGTGCTTCTTA+TGG 0.384882 2.1:-12892980 MS.gene35771:CDS
ATTAGGTGGTGGAAAGAGTT+GGG 0.386750 2.1:-12893035 MS.gene35771:intron
GAAGCTAAATGGTTCAATAA+TGG 0.388219 2.1:-12892449 MS.gene35771:CDS
ATACATGAAGATATGCTATA+TGG 0.396146 2.1:-12892679 MS.gene35771:CDS
GTCATTACACCAAAGAGAAT+TGG 0.404125 2.1:-12893577 MS.gene35771:CDS
TTGAATTTAGCAATGCTTCT+CGG 0.408026 2.1:+12895404 None:intergenic
TTTCGGTTACTGAGGCATAA+TGG 0.414627 2.1:-12895238 MS.gene35771:CDS
AACTTGGGAGGATATGTGAT+TGG 0.414855 2.1:-12895297 MS.gene35771:CDS
ATACAAATAAGGATGCTACT+AGG 0.418565 2.1:-12891511 MS.gene35771:CDS
CCATTCTTAGGTGCTTTGGA+AGG 0.418608 2.1:+12893700 None:intergenic
GGGTATGTTGAGTTTATATG+AGG 0.434234 2.1:-12893850 MS.gene35771:CDS
ATCATCTTCAATGTTACAAT+AGG 0.441194 2.1:+12895376 None:intergenic
GAAGATAAGACCAAAAGTTT+GGG 0.444184 2.1:-12895448 MS.gene35771:CDS
GGATGCTACTAGGGAATTTG+TGG 0.444878 2.1:-12891501 MS.gene35771:CDS
ATTCTCTTTGGTGTAATGAC+TGG 0.447027 2.1:+12893580 None:intergenic
ATGCATGCCACCTTCCTCAT+TGG 0.449603 2.1:-12892359 MS.gene35771:CDS
TCAATCCAAGGGCTGGGGAT+TGG 0.453647 2.1:-12895349 MS.gene35771:CDS
TAGGTGCTTTGGAAGGGTTA+AGG 0.456059 2.1:+12893707 None:intergenic
GCCTGCCTACTTCAGGACTA+AGG 0.459721 2.1:+12893742 None:intergenic
CAACATACCCCAAATGTCAT+TGG 0.463701 2.1:+12893863 None:intergenic
CGTGGGTCACACTCTCCAAC+TGG 0.464408 2.1:+12900431 None:intergenic
CATAACTAGCAAAATACATA+TGG 0.467636 2.1:+12892899 None:intergenic
CCAGGCTCTTCACTTGCTCC+GGG 0.468250 2.1:-12892289 MS.gene35771:CDS
GATAATGGAGTGATTTCTGC+AGG 0.473286 2.1:-12892398 MS.gene35771:CDS
ATTGACTCAATCCAAGGGCT+GGG 0.473312 2.1:-12895355 MS.gene35771:CDS
TTGGGACTTGTTGACAAACT+TGG 0.473750 2.1:-12893017 MS.gene35771:CDS
GATTGACTCAATCCAAGGGC+TGG 0.474173 2.1:-12895356 MS.gene35771:CDS
GTCTTATCTTCAGTTTGTAA+AGG 0.481471 2.1:+12895460 None:intergenic
GATTAGGTGGTGGAAAGAGT+TGG 0.483866 2.1:-12893036 MS.gene35771:intron
ATTTGTGTCCGACCTTGGAT+TGG 0.484513 2.1:+12900406 None:intergenic
TACAAATAAGGATGCTACTA+GGG 0.488175 2.1:-12891510 MS.gene35771:CDS
CTTCGACTATGGGATGACTT+AGG 0.488396 2.1:-12892260 MS.gene35771:CDS
CGGGGAAATTCTTCGACTAT+GGG 0.489879 2.1:-12892270 MS.gene35771:CDS
GATGGATTAATGGTGGTAGA+TGG 0.491155 2.1:-12900454 MS.gene35771:CDS
AATGGCTGGCCCACATGTCC+TGG 0.494407 2.1:-12895220 MS.gene35771:intron
CATTGATCTCATCTTCCAAA+TGG 0.495809 2.1:+12895323 None:intergenic
ACTTGGGAGGATATGTGATT+GGG 0.499523 2.1:-12895296 MS.gene35771:CDS
GGTGACCAATCCCCAGCCCT+TGG 0.500245 2.1:+12895344 None:intergenic
GCCACCTTCCTCATTGGTGA+TGG 0.504456 2.1:-12892353 MS.gene35771:CDS
CATTCTTAGGTGCTTTGGAA+GGG 0.508082 2.1:+12893701 None:intergenic
TTTGCCAATTCCAAAAGAGT+TGG 0.511202 2.1:+12893621 None:intergenic
GCCTCAGTAACCGAAATTGA+AGG 0.515765 2.1:+12895245 None:intergenic
AATATTTCAGATGAAAATGA+AGG 0.518222 2.1:-12891538 MS.gene35771:CDS
GATTTCTGCAGGATCATGTA+TGG 0.522815 2.1:-12892387 MS.gene35771:CDS
GAGTGCTTCTTATGGACAGT+AGG 0.523662 2.1:-12892972 MS.gene35771:CDS
CCTTCCAAAGCACCTAAGAA+TGG 0.525082 2.1:-12893700 MS.gene35771:CDS
GGGATATGACTTCATCATCA+TGG 0.527240 2.1:+12892310 None:intergenic
ACCTTAGTCCTGAAGTAGGC+AGG 0.530056 2.1:-12893743 MS.gene35771:CDS
GGTTACTGAGGCATAATGGC+TGG 0.530808 2.1:-12895234 MS.gene35771:CDS
GAGAATTGGCAGAAATATGC+AGG 0.535303 2.1:-12893563 MS.gene35771:intron
CAGATGGGACCTTGATGCAA+TGG 0.538910 2.1:-12892715 MS.gene35771:CDS
CCCTTCAATTTCGGTTACTG+AGG 0.554070 2.1:-12895246 MS.gene35771:CDS
ACGAGCCCTTGAAAATTCCA+TGG 0.555738 2.1:+12893785 None:intergenic
GTTCAGGAGGAACAAGAAAG+AGG 0.555777 2.1:-12891601 MS.gene35771:intron
CCCGGAGCAAGTGAAGAGCC+TGG 0.558035 2.1:+12892289 None:intergenic
TAACCGAAATTGAAGGGATG+TGG 0.558085 2.1:+12895252 None:intergenic
AGGTAATGATGTGAAGATCA+AGG 0.564747 2.1:+12891336 None:intergenic
AGAGCATGATGGATTAATGG+TGG 0.566276 2.1:-12900461 MS.gene35771:CDS
GTGACCCACGTGCCAATCCA+AGG 0.566679 2.1:-12900418 MS.gene35771:intron
GATGAGATCAATGTTCAACT+TGG 0.572324 2.1:-12895313 MS.gene35771:CDS
ATGCGGCAATTTGAATGACA+TGG 0.572463 2.1:+12892936 None:intergenic
TCCGACCTTGGATTGGCACG+TGG 0.573819 2.1:+12900413 None:intergenic
GAGACAGAGAGAGAGCATGA+TGG 0.577452 2.1:-12900472 MS.gene35771:CDS
AAGATGATTGACTCAATCCA+AGG 0.578634 2.1:-12895361 MS.gene35771:CDS
CCACACCTTAGTCCTGAAGT+AGG 0.581171 2.1:-12893747 MS.gene35771:CDS
CCTCAGTAACCGAAATTGAA+GGG 0.583119 2.1:+12895246 None:intergenic
CCGGAGCAAGTGAAGAGCCT+GGG 0.583946 2.1:+12892290 None:intergenic
GAAGTTGCTCCATTGCATCA+AGG 0.585000 2.1:+12892706 None:intergenic
TGATGATGAAGTCATATCCC+AGG 0.589646 2.1:-12892307 MS.gene35771:CDS
CTACTTCAGGACTAAGGTGT+GGG 0.590174 2.1:+12893748 None:intergenic
ATGCAAGATACCAGGACATG+TGG 0.593231 2.1:+12895210 None:intergenic
CATTGGTGATGGTCTCTCAA+AGG 0.594573 2.1:-12892342 MS.gene35771:CDS
ATGAGATCAATGTTCAACTT+GGG 0.595916 2.1:-12895312 MS.gene35771:CDS
TATCAAAGCTTCTCTTAACA+TGG 0.598838 2.1:-12891431 MS.gene35771:CDS
GATAAGACCAAAAGTTTGGG+TGG 0.599028 2.1:-12895445 MS.gene35771:CDS
CCATAGTCGAAGAATTTCCC+CGG 0.608178 2.1:+12892271 None:intergenic
GTCCATAAGAAGCACTCCGT+TGG 0.609668 2.1:+12892978 None:intergenic
TTGACTCAATCCAAGGGCTG+GGG 0.610758 2.1:-12895354 MS.gene35771:CDS
AGTGCTTCTTATGGACAGTA+GGG 0.615566 2.1:-12892971 MS.gene35771:CDS
GCACGTACATGAATTGGATG+TGG 0.615824 2.1:-12900494 MS.gene35771:CDS
CCGACCTTGGATTGGCACGT+GGG 0.616192 2.1:+12900414 None:intergenic
AGATCAATGTTCAACTTGGG+AGG 0.619212 2.1:-12895309 MS.gene35771:CDS
GTGGCAAAGAGGTCTTGAGA+AGG 0.619717 2.1:+12895271 None:intergenic
GCTCAAGTTATTTATCAACA+TGG 0.621098 2.1:-12891400 MS.gene35771:CDS
TGCAAGATACCAGGACATGT+GGG 0.621181 2.1:+12895211 None:intergenic
GAGACCATCACCAATGAGGA+AGG 0.621909 2.1:+12892349 None:intergenic
CCTACTTCAGGACTAAGGTG+TGG 0.623254 2.1:+12893747 None:intergenic
CAAAGCACCTAAGAATGGCA+AGG 0.625330 2.1:-12893695 MS.gene35771:CDS
TGGCAAAGAGGTCTTGAGAA+GGG 0.625651 2.1:+12895272 None:intergenic
TATAGAATTCAGAAAGAACA+TGG 0.628836 2.1:-12892627 MS.gene35771:CDS
GGATGACTTAGGAACTTCAA+CGG 0.635407 2.1:-12892249 MS.gene35771:intron
AATGGTGGTAGATGGCCAGT+TGG 0.652213 2.1:-12900446 MS.gene35771:CDS
TTGAGAGACCATCACCAATG+AGG 0.655213 2.1:+12892345 None:intergenic
AGATGATTGACTCAATCCAA+GGG 0.655644 2.1:-12895360 MS.gene35771:CDS
ATTGAAGGGATGTGGCAAAG+AGG 0.660331 2.1:+12895260 None:intergenic
TCACTTACCAATGACATTTG+GGG 0.667503 2.1:-12893870 MS.gene35771:CDS
ACCATCACCAATGAGGAAGG+TGG 0.672270 2.1:+12892352 None:intergenic
CAGGCTCTTCACTTGCTCCG+GGG 0.678340 2.1:-12892288 MS.gene35771:CDS
AATTTGTGGAGAGAACTCAA+TGG 0.695889 2.1:-12891487 MS.gene35771:CDS
GAAGCTTTGATAACAGACGA+AGG 0.721487 2.1:+12891442 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr2.1 gene 12891324 12900533 12891324 ID=MS.gene35771
chr2.1 mRNA 12891324 12900533 12891324 ID=MS.gene35771.t1;Parent=MS.gene35771
chr2.1 exon 12900419 12900533 12900419 ID=MS.gene35771.t1.exon1;Parent=MS.gene35771.t1
chr2.1 CDS 12900419 12900533 12900419 ID=cds.MS.gene35771.t1;Parent=MS.gene35771.t1
chr2.1 exon 12895698 12895726 12895698 ID=MS.gene35771.t1.exon2;Parent=MS.gene35771.t1
chr2.1 CDS 12895698 12895726 12895698 ID=cds.MS.gene35771.t1;Parent=MS.gene35771.t1
chr2.1 exon 12895221 12895488 12895221 ID=MS.gene35771.t1.exon3;Parent=MS.gene35771.t1
chr2.1 CDS 12895221 12895488 12895221 ID=cds.MS.gene35771.t1;Parent=MS.gene35771.t1
chr2.1 exon 12893564 12893936 12893564 ID=MS.gene35771.t1.exon4;Parent=MS.gene35771.t1
chr2.1 CDS 12893564 12893936 12893564 ID=cds.MS.gene35771.t1;Parent=MS.gene35771.t1
chr2.1 exon 12892834 12893052 12892834 ID=MS.gene35771.t1.exon5;Parent=MS.gene35771.t1
chr2.1 CDS 12892834 12893052 12892834 ID=cds.MS.gene35771.t1;Parent=MS.gene35771.t1
chr2.1 exon 12892596 12892734 12892596 ID=MS.gene35771.t1.exon6;Parent=MS.gene35771.t1
chr2.1 CDS 12892596 12892734 12892596 ID=cds.MS.gene35771.t1;Parent=MS.gene35771.t1
chr2.1 exon 12892250 12892501 12892250 ID=MS.gene35771.t1.exon7;Parent=MS.gene35771.t1
chr2.1 CDS 12892250 12892501 12892250 ID=cds.MS.gene35771.t1;Parent=MS.gene35771.t1
chr2.1 exon 12891324 12891617 12891324 ID=MS.gene35771.t1.exon8;Parent=MS.gene35771.t1
chr2.1 CDS 12891324 12891617 12891324 ID=cds.MS.gene35771.t1;Parent=MS.gene35771.t1
Gene Sequence

>MS.gene35771

ATGTTCAATAATCATGAGCACGTACATGAATTGGATGTGGAGACAGAGAGAGAGCATGATGGATTAATGGTGGTAGATGGCCAGTTGGAGAGTGTGACCCACGTGCCAATCCAAGGTCGGACACAAATAAGTTCAGGGCGTGATAATCAGCTAACAGCTATCAGTCATCAACTATAAATCATCAGCTAACTTATCAGTTATCTGCTATTTTTACTAACTCGAGCGACATTATCTTATGCTTATCGTCATGTTTTTGATAATATTCCATCTTATATTAATTTCATTGCCCAAAAACATATGCATCAATTGTAAATGTAAGTTTTGCTACAAGTCGAATTTTAATGTACAATAGATAAGTACTGTTTCTAGTGTTAATAAGCACATAAAATCAACAACTAAGACATGATGATAATTTAGCGGAATTTCACATATAAAATAAATAAATATTTTATAGAATTACTACACGGTGGTGGCAAAAACATTTAGAAAAATGCTAATTATAGCGAAAGTTTTTATCAAGAAAACATCCCGACTATGTATTGCATTTGGCTTTTATTGTGGATTTCCTATTTATTTGCACCAGCATCCCTTGATTTCTGCCCAACTCTCTTTTCTCATTGGCTGATTTTTGCTCGGGATGAATTCTGGATGAATTTAGTGGCTTGATATAGCACAACTCAAACATTTATATCTAAATTCGTAAGCACATGAAATCCCAACGAGGACACTACGATAAATTAATGAAATTTAGCGAATAAATTAGATAATTATTTTATAAAATTACTATACTATGTGTCAAAGAAACCCATGTCCAAATTTATAAGCACGTAAAATCCGCAGAGAAGGTGGAGAATTTCACATATAAAATAAATAATTATTTTATAGAATTACTATGCAGAGGTGACTAAAAAATCGTATAAGCATTTTTTTGACAAAAACAAAATAGTGTAACGTTTTTATGCATGTGTAACATGCATATTTCAAGTATCAGTAATTACGTTGTTGAAAACTGAAACAATTCAATAAAAATATCACAAAGCAAACCAATTCAAACCGAAATTGTATTTAATTTGAATGTATTTGGACTTCTATTTTTCTTTCAACTATATAGATTAATTTGCATTTTTTATTTTACCAACTGAATCCACCAAAACTCAACATAAGAGAAACCAATACTTGTACTGCGTGTCTATCTATGCATGTTAATATTTGTATAATAAAGTTTATCTAAGTTAATATTTGTATGATAAATTCACACTTTTATTTGGTAAAATAAACGTCGGTGGAATTTGGAAAACTTGTATAGGGTGGGAAAATTAGAACCACTTGACCAACTTTATCATCGTTACATGCAACAAGTGGCAACTTTTACAGTTTGACCCATATCTGATATGAAATGCACCCACATGATATTTCTAGAGAGCTTTAGTCAAACAAAATGATTAATGTGGAATTAATGGTTATGTAAAACAAAACAAAAAATAATGTTTAGAATTTTGGTATTAGAATATAATAATACAAAGTACCAGTCAATTATGGAAGCTAGATACAAAGTCTATATAAGTGAGCAATCCAATTTGTGTCATCACAAACATAGAAGGAAAGAGATAAGCCTGCAAATACAATGACAATGGCTGTTTCTGAACTTAGAGTTTCATATCTAACAAGCACATTTGCTCGTTGTAATTTTGGGACTTCTACATATCAATCACGCATCTTATCGCTACAAAAATCAAATTCAAGGATTATGCATGGTAAATTATCGATCAAGTCCATTGCTCTCAATGAGAAGGTAGCTTTTAATTAGTAATCTCCCTATCTTATGATATATCCTCATAATAACAAATCTCCAATATGAAGTCTTGGGTGACTGTGATTTGTGTGTGTCTGTGTTAATGTTAATGATTAGTGTGTTTGTTTTTACTATAGGGAAGTTAAAAATGATTCCAACCTTAAAATTGATTTTGACAAGTTTGTGGAATGTTGTAGTTGGTTTTGTCTTGGGAAATGTTTTTTTTTTGAGAGGGTCTTAAGAATTGTTTTTCACTTGAAGTTAGTGTTTAAAATTTGCAGCTTTGACTGAAAACTTGATTTTTAAATTTAAATTCATTGTTGTGGATATAAAAAAATTATATTTATTGTTCAACCCATTTTTATATCCAGAGGCGGAGCTAGGTGGTGCCCAGGTAGTGCACCTGCACACCCTCAAACTTTTAAAATTACACTAATTTTCATATATTAAATGCACTTTGCACACTCTCAATATTAAGATTTGCACCACTCACTTTTCTTTTTTCCGGCTGGCAGGTACGCTGAGCGTTTCTTTTCATTTACTTTACTTTAATTACTTAGTTGATTAATCATTATTAATTTATTACAATTAGATGATAGTATTTTCCTTTTCATATGCATGGCAAAAAAGCTAAATGTGTGTCTACCATTGACCATTCTTTACCACTTTGCCAAAGTACGTGTTATTTTTTGCTAATATAGTATATATAAATAATTACTTAAATTTTTCACTTGAGATTAATATCAATACATATGCAATTAAAATTTATGGGTAAATATAACTTTGATTCTCCAAAAATTGATAAATTTTAATCTCTTTGTATCGCTTATTATGTATTGGCATCTTCCAACTTTTGAAATTTGTCATTATTTTTATCGTCTTTTAACGATAAAAATGGTAAATTTCGTCTTTTAACGATAAAAATGGTAAATTTCGTCTGTAAATCTTAACTCAATTGATAAAAATATTGAAATTGATACTCCGCATATCGTGATCGGAGTTCGAATTTGAACTCTCCACTTATATGTGTGTGTTTTCAATGTCAATTGTCACTTCGTCTATTTACCCAAAAAAAATTGGAGATTCATAACTAAAAGTCAACTTATATATATTGTAAGCGACTAAAAACTTTTTTTATTAGGGAAGTGACTAAAAACTTATATAACCAATTTTTTATATATGTATAATTATTCATTGAAGTTTCCTTCAAAAAAGAAAAAAAAATACTCATTGAAGTTTATAATCCGCACCCCCGACCCAGGGTCCTGGATACGCCACTGTTTATATCATACATAAATCCTATCTCATTGAAAAAAAAAATTCCAAACGTAAATCACTTGAAATTCAATCGATTTTATGGTTGGAATCATTTTTACCAAATATAAATCACTTTGATTTTGAAAAAAAATAATATTTTTTAGACTATTTAAAAGTTGACTATAAAAGTTCTAGGACACTTTTTATATTTTGTTTCCTACCAAGTGTCTTTTAGCTTCTTCCTAAAAAATAAAAGGGTTATGTTAACAAGTGCCCTACATAAGAGCACTTGTTAATGATCAAAAATAAGAAAATAAGAAAATATTTGTAAATCTTATGTAGAAAATGTTCATTTTTAAAATTTCAATTGATTGAACACACAATTCCTAAAAAAAAAAGAAAATTATTCTTTGGACTTCTAAACAAGTACCGCAAAGATAGTTGTTACCATTTCCCTATAACAAAAGATAACATATGTGGCTAAGAAAATATGATATATTAAAGTATCGCGTAAAATATTTTAATATACCATATTTTCTAAACACTCTTTCTAACACTTTCTCAAACTTATGAGTTTCTAATTCAAACTCATAAATTGAATGGAGAGAAAAACATAGATATGATTATGCAAAACAACTCGGTTTTTAAAAAAATAAAGGGTTAAATGTTTTCCTCTCCTATTTGGGCGAGTTTTGGTTTATCGCTTGTATAAAAGATATTGGATCTCAATCTTGTAATTTGAAAATTATTTGGTTTTGTACTTTCGTTACTTTTGACGGTACGAAACATATGTTATATTAGGGGCAAACCAAAATTCGCTCAATTTACAGAGTGCGAAAGTACCGTAAATTTTAAAATTTAATGTCATGAATGTCTAAAATCAAATAATCATCAAATTACAAAGTTAAAATCCCAAGTTTTCTTTTTACGGGGGTAAACCAAAACTCGGTAAAATGACCTGGAAAAACACCATTAACCCAAAAATAAATAAATGCTCCAAAAAAGGTTTCAAACCATTTTTTTAAACAAAGTAAATTAAAATAATGAAAAGTCAAAATTGTACATGTTTTGAGACTTAAAAAACTTTGTAGTAAAACTTAAGGGTGTGTATGATGTGCTAAAAATGAAGGACAAAACATGACAACTTTAATTTTACAGTGTTTGATTTGTAAAATTGTTTGAAGGACATGACAAACTGAAAGTAAGAGACATGACAAAAACTGAAATTCTTGTTCATCTCTATACAACAACACATCTTCGTGTCTTACATATAAGTTTCTAAAACACTAAAATAACGTTTTATCTATAAAAAATCGTATCAGATAAAGAATTATTCAATATCATAAAAATTTATCCTGTAATGTTCTATCTTATGTTGTGATGTTCTGTCTTGTATTTTTTTTTACAATGCTTACTGGTTAACCTATCAAACGCATCCGAAGAACCTATCTCATACAAACACTCGATTTAAAGATCCCATATATAAGTTTACCTAAATTATACTAGTAACTAATTTTGCGGCCTAGGTGTGAGTGCTACATTTATAATTGGAACTAATTTTGCGGCCTAGGTGTGAGTGCTACATTTAATTGGACCGTGTAAGAGTTGAGTTCAAAATAATGTGTAATGTTAGAGTGAATTGCAACCACCTAGCTTGGTTTGTGTTTTACTAGTATTGAGAATTCCTACAACACATGTGGAGAAAATTATCAAAATAATAATATATGTTAATACAATTCACAATTTGTTTGTTTTTAGATTTTATTGGGCAGCAGCAACATTTTACGGTAAACTACAATATCACATCAGACATACATCGATAAAGTTTAACTCTAAATCACATCTTTTTATTTAGAAGTAAATGGATTGAAATAAACTCATTTTTTAGAATAATGTGCCAACAATGCATTTGTTGATAGTCGCTTATAAAATATTGGCTTAGAAATGTTTTTTAGTCTATATTAGAAATATTCAGATTTTATTTTGTTCATGCTAGTTGTCACCTTTACAAACTGAAGATAAGACCAAAAGTTTGGGTGGTCAAGTCAAAAGAAGAAGCCGAGAAGCATTGCTAAATTCAAATGATCCTATTGTAACATTGAAGATGATTGACTCAATCCAAGGGCTGGGGATTGGTCACCATTTGGAAGATGAGATCAATGTTCAACTTGGGAGGATATGTGATTGGGACCCTTCTCAAGACCTCTTTGCCACATCCCTTCAATTTCGGTTACTGAGGCATAATGGCTGGCCCACATGTCCTGGTATCTTGCATTACTATTTGGTTCCACTTCATGTATATGCTTTGAATTTTCTTATGCTTTGGTCCATTTTGTCATGTCAAGAGAGTAATAAACAATCAAAACATAATAGCATAGGAAAATATAATTCTTAAAAACTAAATAGTATAATGAAAGAAAGAGATTCCAAATTTATTTTTTTATTGAGTAGTTTAATGACTAGAATTTCACCGTTAAATTAAATATATGAAATCCCATATATAAACCTAGACCTCTACATATTAGAACGTGGAGAACCAAATTCATTCTTTTTATTTCTAACTTTAGTGGGATTGTAATGTTCTTCAAATTATTAAATATACATTATATAAGAGGCGAAATCAGAGTTTTGATTTTGTGGGGGACAAAACCAAAAGGTATATCACTTAAGTGAGTGTTTGGATCAACTTTTGGCTCACAAATATCACGTCCCAATGCAATTTCAACGTGGAACCATGAAGCTACAAATATGAGCTTCTACGTTGATGTGAATTTTCAATGTGTTGTCTCTAGTTGAAGTGCCGCATAACCAAACAAGTCATTAGTCAAAACAGTTCAAATTTGACATACATACCCCCTATACAAATATTCCCAATGAAACAAACATATACAGTTAATTTACCATAGAAGAAACATTTTCTTAAAAATATGAGAAATATATAATTTTTGTTGTCAAATAGTTTAATGGTGAAAATCACAAACCCTGAATATAGAAAAGTGTAGAATCACATGTTTGAACTTATGCCCCAACATATTCAATATCCATGAAGCCATTAAGTGAATTATACTTACATGACATAATGACCTTATGGATACAAGATGAAGCTCTAGGCTTCCCCAATGTTTCCACCCTTGCATTTAGCCATCAAAATAGACTTAGTAGAAATCAGGCATTTATGATCATGTTGTAAATAATTTAATCTTTATTGTTTAAAATAATAACAATAACTTTATCAATCATATCATTATATTTTTTTTTGACAAGGAAGCATATGATCTAATACTCTATATTATGATATGATTAAGTCCTTGTACCTTCTTTCAGTAAAAAACTAGTGAATTAATGTATCTATTTCTATAGTGCCACACCTATACTGACATGTATTATTGGATTTCATTCAATAATGAATGTATTACTACTATATTCACGTTTATAAGTATTGTATAAGCAGGTTACTTAAGTGTTGCTTTTTTTTTTTTGTCATAATTAATTGTTGCGCTAAAATAAATAAACTTGATGATTTGATTAGTGTGGTTGTTTGGTTATAGATGTTTTCAGGATTTTTTTGGACAAGAGTGGCAATTTTAGGGAATCACTTACCAATGACATTTGGGGTATGTTGAGTTTATATGAGGCATCATATTTAGGGACAGAAGATGAAGAAATATTAAAAAAAGCCATGGAATTTTCAAGGGCTCGTCTAAGTGAATTAATCCCACACCTTAGTCCTGAAGTAGGCAGGCAAATTGGAAGAGCCTTAACCCTTCCAAAGCACCTAAGAATGGCAAGGTTAGAAGCTAGAAACTACATTGAAGAATATAGTCAAGAAAGTAACCAAATACCAACTCTTTTGGAATTGGCAAAGTTAGACTCTGAGATGATCCAGTCATTACACCAAAGAGAATTGGCAGAAATATGCAGGTATTTTATACTTTAGATTATGCCACAACAAAATATTTAATTAAAGGTGGAAGAAATTGATTTGGATTTGTTGCGATCATAATTTCACACATTCGTCGGTAGTAATAGGATGAAGATTGTAGAGTTCAGATTTCAAACTTAGTATTTTCGAGTTAAAAAAAAAAAAAAAATCAAAATATTGCTTTATTTTTGTCTATTCTCGATCCAATGGTCTCTTGACCATGTGAATGCGTGACATTTATGATGACACCAAATCTAAATCAATATTGAATATAATATCACACTACCAAAAAATTAAATTAGCAACCGATATTTAAAGATGAAATTTTTGAAATTTGTCTCTAGTTCTGCCACTAATTTTAGCGACAAGGAACATCACAAATTATGTCTCAATTTATGTATTCCAACATTAATTTCTGCCATGAACATCACAAACCTCATACTTCTTTTTGTCTACTACTATGTTATGAGAAATGCTACATTTCATAGCTAGTTTATTTGATTTGATTAGGTGGTGGAAAGAGTTGGGACTTGTTGACAAACTTGGTTTTGCAAGAGATAGACCAACGGAGTGCTTCTTATGGACAGTAGGGATATTTCCAGAACCATGTCATTCAAATTGCCGCATTGAACTTACAAAAACCATATGTATTTTGCTAGTTATGGATGATATCTTTGACACTTATGGCACATTAGATGAACTTGTTCTTTTCACAAAGGCAATCAAAAGGTTGGTTTGTTTCTATAGAATTTGTATGCATTTAAACTTGATTAATTATAGAAACTAATTATAAATTAACCATGCCAAACTAAACTTTATGTTTTACAGATGGGACCTTGATGCAATGGAGCAACTTCCAGAATACATGAAGATATGCTATATGGCATTATATAACACCACAAATGAAATTGCATATAGAATTCAGAAAGAACATGGACTAACCGTTGTTTCTCACCTGAAAAGAACAGTAAGAATCTAAATGTCATATAAATTAACATAAACCAAAGTATACCAAAGAGTGACATGTTAATAATTGTAGACTTGGTGATTAATTTGTGCAGTGGATTGACATATTTGAAGCATTTCTTGAAGAAGCTAAATGGTTCAATAATGGAAGTGTGCCAAATTTTAAGACATATTTGGATAATGGAGTGATTTCTGCAGGATCATGTATGGCATTGATGCATGCCACCTTCCTCATTGGTGATGGTCTCTCAAAGGAAACTATTTCCATGATGATGAAGTCATATCCCAGGCTCTTCACTTGCTCCGGGGAAATTCTTCGACTATGGGATGACTTAGGAACTTCAACGGTATCAATTTGATCCCTACTGAAAATTAATTAATAAATAAAGGGTCATGCTAACTTGTGCTCTGGGGTACAAGTTAACATTTGTCATAAATAAAAAATGTCTCTATGTGTAGAGACACAAAAATTAGTCACTAATTTTTTATTTTTTTCATTTAGTCTTCGAGTAGATACAAATTTAAATTTTTATCAGTGGTAAATTTTTTTTTTCATTTAGTCTTTGAGTAGATACAAATTTAAATATTTTTATTAGTGGTAAAGGAAAAATATTTTCATTTAAATATTTAAATATTTAAATATTTTCATTTAAATTTTTATTAGTTCATAATTCTTGTAGACATCATCAAAGGCTAAATATTTTTTCATTTAGTCTTTGAGTAGATACACTTTTTTTTTTTTTCATTTAGTCTTTGAGAAGATACAAATTTAAATTTTTATTAGTGGTAATTTTTTTTTTTTTTTTCATTTAGTCCTTGAGTAGATACAAATTTATATATTTATGTAGACATCTGTTTTTAGTGTCAAATTTACATATACTTTGTTTTTAAAATTACCATGATTCCTATGAAACAAATTGTAATAAAATTAAAAATTCAATTAAGATTAATGACATATCTTACTAATTTTTATGTTCAGGAGGAACAAGAAAGAGGAGATAATGCTAGCAGTATACAATGCATGATGAGAGAGAATAATATTTCAGATGAAAATGAAGGAAGAATACAAATAAGGATGCTACTAGGGAATTTGTGGAGAGAACTCAATGGTCTTGCCATGACCAAAAACATACCTTCGTCTGTTATCAAAGCTTCTCTTAACATGGCTAGAACTGCTCAAGTTATTTATCAACATGGAGATGATCAAAGCACATTTACTGTTGATGACTATGTGCAAACCTTGATCTTCACATCATTACCTACTAAAAATTGA

Protein sequence

>MS.gene35771.t1

MFNNHEHVHELDVETEREHDGLMVVDGQLESVTHVPIQDFIGQQQHFTLSPLQTEDKTKSLGGQVKRRSREALLNSNDPIVTLKMIDSIQGLGIGHHLEDEINVQLGRICDWDPSQDLFATSLQFRLLRHNGWPTCPDVFRIFLDKSGNFRESLTNDIWGMLSLYEASYLGTEDEEILKKAMEFSRARLSELIPHLSPEVGRQIGRALTLPKHLRMARLEARNYIEEYSQESNQIPTLLELAKLDSEMIQSLHQRELAEICRWWKELGLVDKLGFARDRPTECFLWTVGIFPEPCHSNCRIELTKTICILLVMDDIFDTYGTLDELVLFTKAIKRWDLDAMEQLPEYMKICYMALYNTTNEIAYRIQKEHGLTVVSHLKRTWIDIFEAFLEEAKWFNNGSVPNFKTYLDNGVISAGSCMALMHATFLIGDGLSKETISMMMKSYPRLFTCSGEILRLWDDLGTSTEEQERGDNASSIQCMMRENNISDENEGRIQIRMLLGNLWRELNGLAMTKNIPSSVIKASLNMARTAQVIYQHGDDQSTFTVDDYVQTLIFTSLPTKN