AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061134


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061134.t1 MTR_1g100070 89.968 309 18 2 1 309 1 296 0.0 522
MS.gene061134.t1 MTR_1g100070 83.483 333 18 3 1 309 1 320 0.0 509
MS.gene061134.t1 MTR_1g100070 88.346 266 18 2 1 266 1 253 8.54e-165 460
MS.gene061134.t1 MTR_6g048440 72.785 316 76 4 1 309 1 313 2.10e-157 442
MS.gene061134.t1 MTR_6g048440 72.165 291 71 4 1 284 1 288 9.15e-151 426
MS.gene061134.t1 MTR_6g048440 70.330 273 71 4 1 266 1 270 1.34e-136 389
MS.gene061134.t1 MTR_6g048440 67.391 230 65 4 1 223 1 227 1.17e-105 308
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061134.t1 AT4G25700 66.561 314 87 6 1 309 1 301 5.43e-145 410
MS.gene061134.t1 AT5G52570 67.722 316 74 8 1 307 1 297 4.66e-136 387
MS.gene061134.t1 AT4G25700 60.088 228 73 6 1 223 1 215 1.95e-85 256
MS.gene061134.t1 AT4G25700 60.088 228 73 6 1 223 1 215 1.95e-85 256
MS.gene061134.t1 AT5G52570 40.064 312 98 11 1 307 1 228 2.83e-44 151

Find 85 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGATTGTAGGGCTTTA+AGG 0.141087 1.4:-77642466 None:intergenic
TTTAGGTAGGTATGGAATAT+TGG 0.214997 1.4:+77643202 MS.gene061134:intron
TTCATCTGGTTAGTGTGTTT+TGG 0.260989 1.4:-77642633 None:intergenic
GGTCTTGGAATTACGGTGTT+TGG 0.277671 1.4:+77643796 MS.gene061134:CDS
GCAATTGCTCTTCTCTCATA+TGG 0.287011 1.4:+77643570 MS.gene061134:CDS
TAGCTTTGGTGTTACCTCTA+TGG 0.317708 1.4:+77642773 MS.gene061134:CDS
TGAGGGCTGGGTTTACTGTT+AGG 0.327820 1.4:-77642678 None:intergenic
TTAGGTAGGTATGGAATATT+GGG 0.328698 1.4:+77643203 MS.gene061134:intron
CTTCACCGTTTGTGTTCTAA+TGG 0.335091 1.4:+77642605 MS.gene061134:CDS
GTCTTGGAATTACGGTGTTT+GGG 0.363241 1.4:+77643797 MS.gene061134:CDS
GATGGGCTCATGAGGTTCTA+TGG 0.363709 1.4:+77643229 MS.gene061134:CDS
GCTATGACGGAAACCTCTTA+AGG 0.364201 1.4:-77642544 None:intergenic
TGACTAGGGTCTTGGAATTA+CGG 0.376865 1.4:+77643789 MS.gene061134:intron
TGAGGGTTGGAGGAGATTGT+AGG 0.377556 1.4:-77642475 None:intergenic
TTGGTGCCTGGTCTCTGCTT+TGG 0.387095 1.4:+77643609 MS.gene061134:CDS
GGGAAGAAGTTGAGGGTTGG+AGG 0.387923 1.4:-77642485 None:intergenic
GTATGGAATATTGGGCTAGA+TGG 0.394991 1.4:+77643211 MS.gene061134:CDS
GTTCCTTGGTCTGAAATGTT+TGG 0.410492 1.4:+77643070 MS.gene061134:CDS
GGGGAAGGGGAAGAAGTTGA+GGG 0.413157 1.4:-77642492 None:intergenic
TCATCTTATGACTAGGGTCT+TGG 0.416939 1.4:+77643781 MS.gene061134:intron
CTATGACGGAAACCTCTTAA+GGG 0.426369 1.4:-77642543 None:intergenic
TTTAACAAGGGATTGGTGCC+TGG 0.432109 1.4:+77643597 MS.gene061134:CDS
AGGGGAAGGGGAAGAAGTTG+AGG 0.434588 1.4:-77642493 None:intergenic
GGCACATTTGCCCTCTCAGT+TGG 0.435097 1.4:+77643091 MS.gene061134:CDS
CATGTTTGTCCATGATGGAT+TGG 0.437840 1.4:+77643828 MS.gene061134:CDS
TTATAGATTCTCATGGCAAA+TGG 0.438735 1.4:+77642812 MS.gene061134:CDS
AAAACATCATTAAGCTCAAA+TGG 0.441795 1.4:-77643525 None:intergenic
CCCCTTTGAATTTGTCCGAA+TGG 0.445592 1.4:-77644088 None:intergenic
GAGGGTTGGAGGAGATTGTA+GGG 0.445723 1.4:-77642474 None:intergenic
GGGCTTTAAGGTTGTGGCGG+TGG 0.448289 1.4:-77642454 None:intergenic
GCCTACATGTTTGTCCATGA+TGG 0.451700 1.4:+77643823 MS.gene061134:CDS
AGCTCAAATGGTCCCTCTCT+TGG 0.457561 1.4:-77643513 None:intergenic
AGGGTAGTGGAGAGGTTCCT+TGG 0.458584 1.4:+77643056 MS.gene061134:intron
TTCTTGTTCTTTGGGTTCGA+AGG 0.461870 1.4:-77642572 None:intergenic
TTGTTTGCAGCTCCACCATT+CGG 0.466820 1.4:+77644073 MS.gene061134:intron
AGCTAGAGAAAGAGATAAGT+AGG 0.469767 1.4:+77644562 MS.gene061134:CDS
AACAGCTAAGATTGCCATAG+AGG 0.474363 1.4:-77642787 None:intergenic
AAATTCAAAGGGGTGCCATA+TGG 0.476176 1.4:+77644098 MS.gene061134:CDS
ACCATTCGGACAAATTCAAA+GGG 0.476981 1.4:+77644087 MS.gene061134:CDS
GCAGCTGTAATGTCTAGCTT+TGG 0.479617 1.4:+77642759 MS.gene061134:CDS
TATGAGAGAAGAGCAATTGC+AGG 0.484302 1.4:-77643567 None:intergenic
GAAGTAGGGCACGTTGGCAA+TGG 0.491586 1.4:-77643875 None:intergenic
AGACCTCATGCATGTGCCAC+AGG 0.495599 1.4:-77643260 None:intergenic
ACGTTGGCAATGGGACCCAC+AGG 0.500337 1.4:-77643865 None:intergenic
AGCAGCAACTCTTGTGAAGT+AGG 0.501312 1.4:-77643890 None:intergenic
ATTGTAGGGCTTTAAGGTTG+TGG 0.501902 1.4:-77642460 None:intergenic
AAGGGGAAGAAGTTGAGGGT+TGG 0.509214 1.4:-77642488 None:intergenic
TATGGAATATTGGGCTAGAT+GGG 0.511988 1.4:+77643212 MS.gene061134:CDS
AAGTAGGGCACGTTGGCAAT+GGG 0.513920 1.4:-77643874 None:intergenic
ATCTTCCATTAGAACACAAA+CGG 0.516336 1.4:-77642610 None:intergenic
CACCATTCGGACAAATTCAA+AGG 0.517507 1.4:+77644086 MS.gene061134:CDS
CTTTGAATTTGTCCGAATGG+TGG 0.523450 1.4:-77644085 None:intergenic
GTGCAGGAAGTTGAAGAAGT+GGG 0.525266 1.4:+77644528 MS.gene061134:intron
CTGTTTATTATAGATTCTCA+TGG 0.538973 1.4:+77642805 MS.gene061134:CDS
GGTGCAGGAAGTTGAAGAAG+TGG 0.541999 1.4:+77644527 MS.gene061134:intron
GGGCTGGGTTTACTGTTAGG+AGG 0.546115 1.4:-77642675 None:intergenic
TCTTATGAACCAATCCATCA+TGG 0.562531 1.4:-77643837 None:intergenic
TTCCCTGTGGCACATGCATG+AGG 0.571758 1.4:+77643257 MS.gene061134:CDS
TTGTTTGTATGATAGGGTAG+TGG 0.576953 1.4:+77643043 MS.gene061134:intron
GGTGGAAAGTTCAGCCGCCA+TGG 0.584774 1.4:-77642436 None:intergenic
GCAGCAACTCTTGTGAAGTA+GGG 0.586414 1.4:-77643889 None:intergenic
CAGGAAGTTGAAGAAGTGGG+AGG 0.586564 1.4:+77644531 MS.gene061134:intron
TAGACATTACAGCTGCAACT+AGG 0.594222 1.4:-77642752 None:intergenic
AGGAAGTTGAAGAAGTGGGA+GGG 0.595124 1.4:+77644532 MS.gene061134:intron
GTCACATCATCGACCAAGAG+AGG 0.605840 1.4:+77643500 MS.gene061134:intron
TTGGGCTAGATGGGCTCATG+AGG 0.606671 1.4:+77643221 MS.gene061134:CDS
TATGACGGAAACCTCTTAAG+GGG 0.609525 1.4:-77642542 None:intergenic
TACAGCAGCACCAACTGAGA+GGG 0.619847 1.4:-77643101 None:intergenic
TTCTATGGCATGCTTCCCTG+TGG 0.625607 1.4:+77643244 MS.gene061134:CDS
GACCTCATGCATGTGCCACA+GGG 0.632725 1.4:-77643259 None:intergenic
TGTATGATAGGGTAGTGGAG+AGG 0.645728 1.4:+77643048 MS.gene061134:intron
TAGATTCTCATGGCAAATGG+AGG 0.648620 1.4:+77642815 MS.gene061134:CDS
ACTGCACCAAAGCAGAGACC+AGG 0.649131 1.4:-77643615 None:intergenic
TCCATCATGGACAAACATGT+AGG 0.652573 1.4:-77643824 None:intergenic
GTAGGGCTTTAAGGTTGTGG+CGG 0.654013 1.4:-77642457 None:intergenic
TCACATCATCGACCAAGAGA+GGG 0.657623 1.4:+77643501 MS.gene061134:CDS
GTGCCAAACATTTCAGACCA+AGG 0.665898 1.4:-77643073 None:intergenic
TTACAGCAGCACCAACTGAG+AGG 0.672349 1.4:-77643102 None:intergenic
TCTTGTGAAGTAGGGCACGT+TGG 0.672979 1.4:-77643881 None:intergenic
CGTTGGCAATGGGACCCACA+GGG 0.676768 1.4:-77643864 None:intergenic
GGTTCATAAGAGATTCCCTG+TGG 0.688013 1.4:+77643849 MS.gene061134:CDS
ATGACGGAAACCTCTTAAGG+GGG 0.694254 1.4:-77642541 None:intergenic
CACTAACCAGATGAAAACAG+AGG 0.697643 1.4:+77642641 MS.gene061134:CDS
GTTCATAAGAGATTCCCTGT+GGG 0.700599 1.4:+77643850 MS.gene061134:CDS
CCATTCGGACAAATTCAAAG+GGG 0.749285 1.4:+77644088 MS.gene061134:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGAAATTGGTTAATTT+TGG + chr1.4:77643156-77643175 MS.gene061134:intron 15.0%
!!! AATTCAACATTGATTTTTTT+AGG + chr1.4:77643185-77643204 MS.gene061134:intron 15.0%
!!! ATTTTTATTTTTTGTGCAAA+TGG + chr1.4:77644020-77644039 MS.gene061134:intron 15.0%
!!! TTTTTATTTTTTGTGCAAAT+GGG + chr1.4:77644021-77644040 MS.gene061134:intron 15.0%
!! AAAAAAAAAAACCAAGAAGA+GGG - chr1.4:77644161-77644180 None:intergenic 20.0%
!! TAAACAAAAGAAAATATGAG+TGG + chr1.4:77643978-77643997 MS.gene061134:intron 20.0%
!! TTAGTAAATCCCTTAATTAA+CGG + chr1.4:77643670-77643689 MS.gene061134:intron 20.0%
!!! ATTTTTAGTTGCACAAAAAT+TGG + chr1.4:77642701-77642720 MS.gene061134:CDS 20.0%
!!! TCATATGGTTTTTTTAACAA+GGG + chr1.4:77643585-77643604 MS.gene061134:CDS 20.0%
! AAAACATCATTAAGCTCAAA+TGG - chr1.4:77643528-77643547 None:intergenic 25.0%
! ATGTGAAAGAAAAGAGAAAA+TGG - chr1.4:77643310-77643329 None:intergenic 25.0%
! ATGTGAATAAACAAATGCAT+TGG + chr1.4:77643356-77643375 MS.gene061134:intron 25.0%
! CAAAAAAAAAAACCAAGAAG+AGG - chr1.4:77644162-77644181 None:intergenic 25.0%
! CTGTTTATTATAGATTCTCA+TGG + chr1.4:77642805-77642824 MS.gene061134:CDS 25.0%
! GATTATTCATCAATTAAGTG+TGG + chr1.4:77644253-77644272 MS.gene061134:intron 25.0%
! TCAAGCAATTCTTAATTACT+TGG - chr1.4:77643921-77643940 None:intergenic 25.0%
! TCAGCAATTGAAAATGAAAT+TGG + chr1.4:77643146-77643165 MS.gene061134:intron 25.0%
! TCATTTCAGAGAATAAATCA+GGG - chr1.4:77643753-77643772 None:intergenic 25.0%
! TGTGAAAGAAAAGAGAAAAT+GGG - chr1.4:77643309-77643328 None:intergenic 25.0%
! TTTGTGCAACTAAAAATTGA+GGG - chr1.4:77642698-77642717 None:intergenic 25.0%
!! TTTTGTGCAACTAAAAATTG+AGG - chr1.4:77642699-77642718 None:intergenic 25.0%
!!! ATCGTTTTTTGAATGATGTT+TGG + chr1.4:77643019-77643038 MS.gene061134:intron 25.0%
!!! CAACATTGATTTTTTTAGGT+AGG + chr1.4:77643189-77643208 MS.gene061134:intron 25.0%
!!! CTCATATGGTTTTTTTAACA+AGG + chr1.4:77643584-77643603 MS.gene061134:CDS 25.0%
!!! TCGTTTTTTGAATGATGTTT+GGG + chr1.4:77643020-77643039 MS.gene061134:intron 25.0%
!!! TGTTGATTTTCTTGTTCTTT+GGG - chr1.4:77642583-77642602 None:intergenic 25.0%
!!! TTGATTTTTTTAGGTAGGTA+TGG + chr1.4:77643194-77643213 MS.gene061134:intron 25.0%
ATCTTCCATTAGAACACAAA+CGG - chr1.4:77642613-77642632 None:intergenic 30.0%
CAAACAAACAACAAAACCAA+AGG - chr1.4:77644060-77644079 None:intergenic 30.0%
CATCTTTGATTCAATGCTAT+TGG - chr1.4:77643464-77643483 None:intergenic 30.0%
CCAATGAAACCGTTAATTAA+GGG - chr1.4:77643682-77643701 None:intergenic 30.0%
CCTTAATTAACGGTTTCATT+GGG + chr1.4:77643680-77643699 MS.gene061134:intron 30.0%
GATTCAATGCTATTGGTATA+AGG - chr1.4:77643457-77643476 None:intergenic 30.0%
GTCATTTCAGAGAATAAATC+AGG - chr1.4:77643754-77643773 None:intergenic 30.0%
TTAGGTAGGTATGGAATATT+GGG + chr1.4:77643203-77643222 MS.gene061134:intron 30.0%
TTATAGATTCTCATGGCAAA+TGG + chr1.4:77642812-77642831 MS.gene061134:CDS 30.0%
TTTAGGTAGGTATGGAATAT+TGG + chr1.4:77643202-77643221 MS.gene061134:intron 30.0%
TTTCAGCTCCTACAAAATTA+CGG - chr1.4:77642900-77642919 None:intergenic 30.0%
! ATTTGACACCGTAATTTTGT+AGG + chr1.4:77642889-77642908 MS.gene061134:intron 30.0%
! CAAATTTGGATGCATTTTGT+GGG + chr1.4:77644474-77644493 MS.gene061134:intron 30.0%
! GCAAAATATTCAAGTTAGCA+TGG - chr1.4:77643435-77643454 None:intergenic 30.0%
! TAAGTGCATGTTTGAAATGA+CGG - chr1.4:77642984-77643003 None:intergenic 30.0%
!! TTTGGGTTGTTTGTATGATA+GGG + chr1.4:77643037-77643056 MS.gene061134:intron 30.0%
!!! GTGTTGATTTTCTTGTTCTT+TGG - chr1.4:77642584-77642603 None:intergenic 30.0%
!!! TGGTTTTTTTAACAAGGGAT+TGG + chr1.4:77643590-77643609 MS.gene061134:CDS 30.0%
AAAAGAGAAAATGGGAAGAC+TGG - chr1.4:77643301-77643320 None:intergenic 35.0%
ACCATTCGGACAAATTCAAA+GGG + chr1.4:77644087-77644106 MS.gene061134:CDS 35.0%
AGCTAGAGAAAGAGATAAGT+AGG + chr1.4:77644562-77644581 MS.gene061134:CDS 35.0%
ATCCTCATCATCTTATGACT+AGG + chr1.4:77643774-77643793 MS.gene061134:intron 35.0%
CCACAAAATGCATCCAAATT+TGG - chr1.4:77644476-77644495 None:intergenic 35.0%
CCCAATGAAACCGTTAATTA+AGG - chr1.4:77643683-77643702 None:intergenic 35.0%
CCCTTAATTAACGGTTTCAT+TGG + chr1.4:77643679-77643698 MS.gene061134:intron 35.0%
TCCTCATCATCTTATGACTA+GGG + chr1.4:77643775-77643794 MS.gene061134:intron 35.0%
TCTTATGAACCAATCCATCA+TGG - chr1.4:77643840-77643859 None:intergenic 35.0%
TGTGCAAATGGGATCTAATT+TGG + chr1.4:77644032-77644051 MS.gene061134:intron 35.0%
TGTGGAGAAAAGAGAAAAAC+TGG + chr1.4:77644271-77644290 MS.gene061134:intron 35.0%
TTGTTTGTATGATAGGGTAG+TGG + chr1.4:77643043-77643062 MS.gene061134:intron 35.0%
! CCAAATTTGGATGCATTTTG+TGG + chr1.4:77644473-77644492 MS.gene061134:intron 35.0%
! TATGGAATATTGGGCTAGAT+GGG + chr1.4:77643212-77643231 MS.gene061134:CDS 35.0%
! TTCATCTGGTTAGTGTGTTT+TGG - chr1.4:77642636-77642655 None:intergenic 35.0%
! TTTCTTCCTCTGTTTTCATC+TGG - chr1.4:77642650-77642669 None:intergenic 35.0%
!! GTTTGGGTTGTTTGTATGAT+AGG + chr1.4:77643036-77643055 MS.gene061134:intron 35.0%
!! TTCGAAGGATTTTGCTATGA+CGG - chr1.4:77642560-77642579 None:intergenic 35.0%
AACAGCTAAGATTGCCATAG+AGG - chr1.4:77642790-77642809 None:intergenic 40.0%
AAGAAGAGGGAATGTGAATG+TGG - chr1.4:77644148-77644167 None:intergenic 40.0%
ACATTCACATTCCCTCTTCT+TGG + chr1.4:77644147-77644166 MS.gene061134:intron 40.0%
ACCCTAGTCATAAGATGATG+AGG - chr1.4:77643779-77643798 None:intergenic 40.0%
ACTCTGATACACACGTGATT+CGG + chr1.4:77642949-77642968 MS.gene061134:intron 40.0%
CACCATTCGGACAAATTCAA+AGG + chr1.4:77644086-77644105 MS.gene061134:CDS 40.0%
CACTAACCAGATGAAAACAG+AGG + chr1.4:77642641-77642660 MS.gene061134:CDS 40.0%
CCATTCGGACAAATTCAAAG+GGG + chr1.4:77644088-77644107 MS.gene061134:CDS 40.0%
CTAGTTGAGTAGTACTTGTG+GGG + chr1.4:77644354-77644373 MS.gene061134:intron 40.0%
CTTCACCGTTTGTGTTCTAA+TGG + chr1.4:77642605-77642624 MS.gene061134:CDS 40.0%
CTTTGAATTTGTCCGAATGG+TGG - chr1.4:77644088-77644107 None:intergenic 40.0%
GCAACTAAAAATTGAGGGCT+GGG - chr1.4:77642693-77642712 None:intergenic 40.0%
GCAATTGCTCTTCTCTCATA+TGG + chr1.4:77643570-77643589 MS.gene061134:CDS 40.0%
GCTAGTTGAGTAGTACTTGT+GGG + chr1.4:77644353-77644372 MS.gene061134:intron 40.0%
GGTCCTAAAAAGAGTCCATA+TGG - chr1.4:77644116-77644135 None:intergenic 40.0%
GGTGCTAATAACACATTGCT+TGG + chr1.4:77644495-77644514 MS.gene061134:intron 40.0%
GTCTTGGAATTACGGTGTTT+GGG + chr1.4:77643797-77643816 MS.gene061134:CDS 40.0%
GTTCATAAGAGATTCCCTGT+GGG + chr1.4:77643850-77643869 MS.gene061134:CDS 40.0%
TAGACATTACAGCTGCAACT+AGG - chr1.4:77642755-77642774 None:intergenic 40.0%
TAGATTCTCATGGCAAATGG+AGG + chr1.4:77642815-77642834 MS.gene061134:CDS 40.0%
TATGAGAGAAGAGCAATTGC+AGG - chr1.4:77643570-77643589 None:intergenic 40.0%
TCATCTTATGACTAGGGTCT+TGG + chr1.4:77643781-77643800 MS.gene061134:intron 40.0%
TCCATCATGGACAAACATGT+AGG - chr1.4:77643827-77643846 None:intergenic 40.0%
TGACTAGGGTCTTGGAATTA+CGG + chr1.4:77643789-77643808 MS.gene061134:intron 40.0%
TGCAACTAAAAATTGAGGGC+TGG - chr1.4:77642694-77642713 None:intergenic 40.0%
! CTATGACGGAAACCTCTTAA+GGG - chr1.4:77642546-77642565 None:intergenic 40.0%
! GTATGGAATATTGGGCTAGA+TGG + chr1.4:77643211-77643230 MS.gene061134:CDS 40.0%
! GTGCCATATGGACTCTTTTT+AGG + chr1.4:77644110-77644129 MS.gene061134:CDS 40.0%
! GTTCCTTGGTCTGAAATGTT+TGG + chr1.4:77643070-77643089 MS.gene061134:CDS 40.0%
! TATGACGGAAACCTCTTAAG+GGG - chr1.4:77642545-77642564 None:intergenic 40.0%
! TTCTTGTTCTTTGGGTTCGA+AGG - chr1.4:77642575-77642594 None:intergenic 40.0%
!! AAATTCAAAGGGGTGCCATA+TGG + chr1.4:77644098-77644117 MS.gene061134:CDS 40.0%
!! AACAGTGTTGGGGTTGTTTT+AGG - chr1.4:77642516-77642535 None:intergenic 40.0%
!! ACAGTGTTGGGGTTGTTTTA+GGG - chr1.4:77642515-77642534 None:intergenic 40.0%
!! ATTGTAGGGCTTTAAGGTTG+TGG - chr1.4:77642463-77642482 None:intergenic 40.0%
!! CATGTTTGTCCATGATGGAT+TGG + chr1.4:77643828-77643847 MS.gene061134:CDS 40.0%
!! TAGCTTTGGTGTTACCTCTA+TGG + chr1.4:77642773-77642792 MS.gene061134:CDS 40.0%
!!! TGGACTCTTTTTAGGACCAA+AGG + chr1.4:77644118-77644137 MS.gene061134:CDS 40.0%
AGCAGCAACTCTTGTGAAGT+AGG - chr1.4:77643893-77643912 None:intergenic 45.0%
AGGAAGTTGAAGAAGTGGGA+GGG + chr1.4:77644532-77644551 MS.gene061134:intron 45.0%
AGTGTGCTCGTAGCCAAATT+TGG + chr1.4:77644460-77644479 MS.gene061134:intron 45.0%
ATGTGAATGTGGCTGACCTT+TGG - chr1.4:77644137-77644156 None:intergenic 45.0%
CACATTGCTTGGCTGACATA+TGG + chr1.4:77644506-77644525 MS.gene061134:intron 45.0%
CCCCTTTGAATTTGTCCGAA+TGG - chr1.4:77644091-77644110 None:intergenic 45.0%
CGCTAGTTGAGTAGTACTTG+TGG + chr1.4:77644352-77644371 MS.gene061134:intron 45.0%
GAGGAGATTGTAGGGCTTTA+AGG - chr1.4:77642469-77642488 None:intergenic 45.0%
GCAGCAACTCTTGTGAAGTA+GGG - chr1.4:77643892-77643911 None:intergenic 45.0%
GCCTACATGTTTGTCCATGA+TGG + chr1.4:77643823-77643842 MS.gene061134:CDS 45.0%
GGTCTTGGAATTACGGTGTT+TGG + chr1.4:77643796-77643815 MS.gene061134:CDS 45.0%
GGTTCATAAGAGATTCCCTG+TGG + chr1.4:77643849-77643868 MS.gene061134:CDS 45.0%
GTGCAGGAAGTTGAAGAAGT+GGG + chr1.4:77644528-77644547 MS.gene061134:intron 45.0%
GTGCCAAACATTTCAGACCA+AGG - chr1.4:77643076-77643095 None:intergenic 45.0%
TCACATCATCGACCAAGAGA+GGG + chr1.4:77643501-77643520 MS.gene061134:CDS 45.0%
TGGGAAGACTGGTGAAGAAT+CGG - chr1.4:77643290-77643309 None:intergenic 45.0%
TTGTTTGCAGCTCCACCATT+CGG + chr1.4:77644073-77644092 MS.gene061134:intron 45.0%
! ATGACGGAAACCTCTTAAGG+GGG - chr1.4:77642544-77642563 None:intergenic 45.0%
! GCAGCTGTAATGTCTAGCTT+TGG + chr1.4:77642759-77642778 MS.gene061134:CDS 45.0%
! GCTATGACGGAAACCTCTTA+AGG - chr1.4:77642547-77642566 None:intergenic 45.0%
! TTTAACAAGGGATTGGTGCC+TGG + chr1.4:77643597-77643616 MS.gene061134:CDS 45.0%
!! GGGATCTAATTTGGTGCCTT+TGG + chr1.4:77644041-77644060 MS.gene061134:intron 45.0%
!! TGTATGATAGGGTAGTGGAG+AGG + chr1.4:77643048-77643067 MS.gene061134:intron 45.0%
!!! CAGTGTTGGGGTTGTTTTAG+GGG - chr1.4:77642514-77642533 None:intergenic 45.0%
!!! TTGGGGTTGTTTTAGGGGAA+GGG - chr1.4:77642509-77642528 None:intergenic 45.0%
AAGGGGAAGAAGTTGAGGGT+TGG - chr1.4:77642491-77642510 None:intergenic 50.0%
AAGGGGGTGAAGAACAGTGT+TGG - chr1.4:77642528-77642547 None:intergenic 50.0%
AAGTAGGGCACGTTGGCAAT+GGG - chr1.4:77643877-77643896 None:intergenic 50.0%
AGCTCAAATGGTCCCTCTCT+TGG - chr1.4:77643516-77643535 None:intergenic 50.0%
AGGGGGTGAAGAACAGTGTT+GGG - chr1.4:77642527-77642546 None:intergenic 50.0%
CAGGAAGTTGAAGAAGTGGG+AGG + chr1.4:77644531-77644550 MS.gene061134:intron 50.0%
CTGTTCTTCACCCCCTTAAG+AGG + chr1.4:77642531-77642550 MS.gene061134:CDS 50.0%
GAGGGTTGGAGGAGATTGTA+GGG - chr1.4:77642477-77642496 None:intergenic 50.0%
GGTGCAGGAAGTTGAAGAAG+TGG + chr1.4:77644527-77644546 MS.gene061134:intron 50.0%
GTCACATCATCGACCAAGAG+AGG + chr1.4:77643500-77643519 MS.gene061134:intron 50.0%
TACAGCAGCACCAACTGAGA+GGG - chr1.4:77643104-77643123 None:intergenic 50.0%
TCTTGTGAAGTAGGGCACGT+TGG - chr1.4:77643884-77643903 None:intergenic 50.0%
TGAGGGCTGGGTTTACTGTT+AGG - chr1.4:77642681-77642700 None:intergenic 50.0%
TGAGGGTTGGAGGAGATTGT+AGG - chr1.4:77642478-77642497 None:intergenic 50.0%
TTACAGCAGCACCAACTGAG+AGG - chr1.4:77643105-77643124 None:intergenic 50.0%
TTCTATGGCATGCTTCCCTG+TGG + chr1.4:77643244-77643263 MS.gene061134:CDS 50.0%
! GATGGGCTCATGAGGTTCTA+TGG + chr1.4:77643229-77643248 MS.gene061134:CDS 50.0%
!! GTAGGGCTTTAAGGTTGTGG+CGG - chr1.4:77642460-77642479 None:intergenic 50.0%
!!! GTTGGGGTTGTTTTAGGGGA+AGG - chr1.4:77642510-77642529 None:intergenic 50.0%
!!! TGGGGTTGTTTTAGGGGAAG+GGG - chr1.4:77642508-77642527 None:intergenic 50.0%
ACTGCACCAAAGCAGAGACC+AGG - chr1.4:77643618-77643637 None:intergenic 55.0%
AGACCTCATGCATGTGCCAC+AGG - chr1.4:77643263-77643282 None:intergenic 55.0%
AGGGGAAGGGGAAGAAGTTG+AGG - chr1.4:77642496-77642515 None:intergenic 55.0%
GAAGTAGGGCACGTTGGCAA+TGG - chr1.4:77643878-77643897 None:intergenic 55.0%
GACCTCATGCATGTGCCACA+GGG - chr1.4:77643262-77643281 None:intergenic 55.0%
GCTTGGCTGACATATGGTGC+AGG + chr1.4:77644512-77644531 MS.gene061134:intron 55.0%
GGCACATTTGCCCTCTCAGT+TGG + chr1.4:77643091-77643110 MS.gene061134:CDS 55.0%
GGGAAGAAGTTGAGGGTTGG+AGG - chr1.4:77642488-77642507 None:intergenic 55.0%
GGGCTGGGTTTACTGTTAGG+AGG - chr1.4:77642678-77642697 None:intergenic 55.0%
GGGGAAGGGGAAGAAGTTGA+GGG - chr1.4:77642495-77642514 None:intergenic 55.0%
GGGGGTGAAGAACAGTGTTG+GGG - chr1.4:77642526-77642545 None:intergenic 55.0%
TTCCCTGTGGCACATGCATG+AGG + chr1.4:77643257-77643276 MS.gene061134:CDS 55.0%
! TTGGGCTAGATGGGCTCATG+AGG + chr1.4:77643221-77643240 MS.gene061134:CDS 55.0%
! TTGGTGCCTGGTCTCTGCTT+TGG + chr1.4:77643609-77643628 MS.gene061134:CDS 55.0%
!! AGGGTAGTGGAGAGGTTCCT+TGG + chr1.4:77643056-77643075 MS.gene061134:intron 55.0%
ACGTTGGCAATGGGACCCAC+AGG - chr1.4:77643868-77643887 None:intergenic 60.0%
CGTTGGCAATGGGACCCACA+GGG - chr1.4:77643867-77643886 None:intergenic 60.0%
!! GGGCTTTAAGGTTGTGGCGG+TGG - chr1.4:77642457-77642476 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 77642438 77644611 77642438 ID=MS.gene061134
chr1.4 mRNA 77642438 77644611 77642438 ID=MS.gene061134.t1;Parent=MS.gene061134
chr1.4 exon 77642438 77642836 77642438 ID=MS.gene061134.t1.exon1;Parent=MS.gene061134.t1
chr1.4 CDS 77642438 77642836 77642438 ID=cds.MS.gene061134.t1;Parent=MS.gene061134.t1
chr1.4 exon 77643058 77643120 77643058 ID=MS.gene061134.t1.exon2;Parent=MS.gene061134.t1
chr1.4 CDS 77643058 77643120 77643058 ID=cds.MS.gene061134.t1;Parent=MS.gene061134.t1
chr1.4 exon 77643207 77643278 77643207 ID=MS.gene061134.t1.exon3;Parent=MS.gene061134.t1
chr1.4 CDS 77643207 77643278 77643207 ID=cds.MS.gene061134.t1;Parent=MS.gene061134.t1
chr1.4 exon 77643501 77643635 77643501 ID=MS.gene061134.t1.exon4;Parent=MS.gene061134.t1
chr1.4 CDS 77643501 77643635 77643501 ID=cds.MS.gene061134.t1;Parent=MS.gene061134.t1
chr1.4 exon 77643796 77643921 77643796 ID=MS.gene061134.t1.exon5;Parent=MS.gene061134.t1
chr1.4 CDS 77643796 77643921 77643796 ID=cds.MS.gene061134.t1;Parent=MS.gene061134.t1
chr1.4 exon 77644083 77644139 77644083 ID=MS.gene061134.t1.exon6;Parent=MS.gene061134.t1
chr1.4 CDS 77644083 77644139 77644083 ID=cds.MS.gene061134.t1;Parent=MS.gene061134.t1
chr1.4 exon 77644534 77644611 77644534 ID=MS.gene061134.t1.exon7;Parent=MS.gene061134.t1
chr1.4 CDS 77644534 77644611 77644534 ID=cds.MS.gene061134.t1;Parent=MS.gene061134.t1
Gene Sequence

>MS.gene061134

ATGGCGGCTGAACTTTCCACCGCCACAACCTTAAAGCCCTACAATCTCCTCCAACCCTCAACTTCTTCCCCTTCCCCTAAAACAACCCCAACACTGTTCTTCACCCCCTTAAGAGGTTTCCGTCATAGCAAAATCCTTCGAACCCAAAGAACAAGAAAATCAACACGCTTCACCGTTTGTGTTCTAATGGAAGATCCAAAACACACTAACCAGATGAAAACAGAGGAAGAAATAGAACCTCCTAACAGTAAACCCAGCCCTCAATTTTTAGTTGCACAAAAATTGGCGAGAAAGAAGTCTCAAAGATTCACTTACCTAGTTGCAGCTGTAATGTCTAGCTTTGGTGTTACCTCTATGGCAATCTTAGCTGTTTATTATAGATTCTCATGGCAAATGGAGGTATATACGTAATATATATTGTTTGATTCACAGTGAATTTGATGAAATCACGATTTGACACCGTAATTTTGTAGGAGCTGAAAAATATACTAGCTTTTTATATATCAAAATTACTCTGATACACACGTGATTCGGTCAAACTTACCGTCATTTCAAACATGCACTTAATTAGTTGCTTAAAGATCGTTTTTTGAATGATGTTTGGGTTGTTTGTATGATAGGGTAGTGGAGAGGTTCCTTGGTCTGAAATGTTTGGCACATTTGCCCTCTCAGTTGGTGCTGCTGTAAGTAATGTGACTATTTCTCAATTCAGCAATTGAAAATGAAATTGGTTAATTTTGGAGATTAAATTCAACATTGATTTTTTTAGGTAGGTATGGAATATTGGGCTAGATGGGCTCATGAGGTTCTATGGCATGCTTCCCTGTGGCACATGCATGAGGTCTGCTTCCGATTCTTCACCAGTCTTCCCATTTTCTCTTTTCTTTCACATGCAATCGTTCTATTTTAATTTTGTTTATGTGAATAAACAAATGCATTGGTCAAAATAATCACTTATTTTAATGAATACATAAATACATTATTCAAAATAGTTCCATGCTAACTTGAATATTTTGCCTTATACCAATAGCATTGAATCAAAGATGAATTTGTAATGTTGCAGTCACATCATCGACCAAGAGAGGGACCATTTGAGCTTAATGATGTTTTTGCTATAATCAACGCTGTTCCTGCAATTGCTCTTCTCTCATATGGTTTTTTTAACAAGGGATTGGTGCCTGGTCTCTGCTTTGGTGCAGTAAGTAGTATATCTTTGAGAATCTACTTTTTTATTAGTAAATCCCTTAATTAACGGTTTCATTGGGATTTGTTTAATCTAATTTTTAATCATACAAGCGATTTTACGATAATACCCTGATTTATTCTCTGAAATGACATCCTCATCATCTTATGACTAGGGTCTTGGAATTACGGTGTTTGGGATTGCCTACATGTTTGTCCATGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCACAAGAGTTGCTGCTGCTCACCAAGTAATTAAGAATTGCTTGAGTAGTGTTCAATATATTTTTACATTTTCTTAGCAAAATAAACAAAAGAAAATATGAGTGGCATGTGTGTGTGTTTATTTATTTTTATTTTTTGTGCAAATGGGATCTAATTTGGTGCCTTTGGTTTTGTTGTTTGTTTGCAGCTCCACCATTCGGACAAATTCAAAGGGGTGCCATATGGACTCTTTTTAGGACCAAAGGTCAGCCACATTCACATTCCCTCTTCTTGGTTTTTTTTTTTGTTCATTAAAGTATTTTAGACTTGTCAAAAAAAATTAAGTAGTTTAGATGAATTGTATTCTTTTGTTAACTTGATTATTCATCAATTAAGTGTGGAGAAAAGAGAAAAACTGGTAATCTTCTATTGCATGTTTCAAATTGCATCTCAATATATCAAATGTCTATATACTTTCGCTAGTTGAGTAGTACTTGTGGGGACAAAATTCAACTATAACTAAAATGTTCATTTCATTGAACTTTCGTGAGATTATATAAAGTTTACTCGCTATGTAAAAAATTTAGTGTGCTCGTAGCCAAATTTGGATGCATTTTGTGGGTGCTAATAACACATTGCTTGGCTGACATATGGTGCAGGAAGTTGAAGAAGTGGGAGGGATAGAAGAGCTAGAGAAAGAGATAAGTAGGAGAACAAGATCATATACTGACTCATGA

Protein sequence

>MS.gene061134.t1

MAAELSTATTLKPYNLLQPSTSSPSPKTTPTLFFTPLRGFRHSKILRTQRTRKSTRFTVCVLMEDPKHTNQMKTEEEIEPPNSKPSPQFLVAQKLARKKSQRFTYLVAAVMSSFGVTSMAILAVYYRFSWQMEGSGEVPWSEMFGTFALSVGAAVGMEYWARWAHEVLWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFTRVAAAHQLHHSDKFKGVPYGLFLGPKEVEEVGGIEELEKEISRRTRSYTDS