Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36487.t1 | XP_003608497.1 | 96.9 | 260 | 5 | 2 | 1 | 259 | 1 | 258 | 1.30E-125 | 459.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36487.t1 | Q8GWI5 | 59.1 | 203 | 81 | 1 | 1 | 203 | 1 | 201 | 8.8e-54 | 211.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36487.t1 | G7JDZ3 | 96.9 | 260 | 5 | 2 | 1 | 259 | 1 | 258 | 9.5e-126 | 459.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene36487 | 0.803868 | 2.84E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene36487 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene052954 | MS.gene36487 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene36487 | 0.80096 | 1.13E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene36487 | 0.8088 | 2.59E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene36487 | 0.809489 | 1.85E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene36487 | 0.804835 | 1.78E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene36487 | 0.806992 | 6.28E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene36487 | 0.826511 | 2.61E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene36487 | 0.819711 | 1.01E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene36487 | 0.803497 | 3.39E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene36487 | 0.800544 | 1.37E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36487.t1 | MTR_4g096750 | 96.923 | 260 | 5 | 2 | 1 | 259 | 1 | 258 | 1.12e-180 | 496 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCTTTCAATTCGAAAA+TGG | 0.257771 | 4.1:-18337242 | None:intergenic |
| TCGATGGTTCTGTGCTTCTT+TGG | 0.305984 | 4.1:-18337202 | None:intergenic |
| CTGTCTGCGTAGTTTAATTT+CGG | 0.343209 | 4.1:-18339801 | None:intergenic |
| GTTGGGCTTGGTCGAGCTGC+TGG | 0.357156 | 4.1:+18338139 | MS.gene36487:CDS |
| GCGCGTTGATATTCGGCGTC+AGG | 0.359015 | 4.1:-18337313 | None:intergenic |
| AGCCTATCTTCGGAAGAAAT+TGG | 0.365885 | 4.1:+18339859 | MS.gene36487:CDS |
| TTGTATGATAAGTTAGTTAA+GGG | 0.401547 | 4.1:+18337944 | MS.gene36487:CDS |
| AACTTGAAACCTGTTGGGCT+TGG | 0.402705 | 4.1:+18338127 | MS.gene36487:CDS |
| TTTATTGGAATAGGGACCTT+TGG | 0.405644 | 4.1:-18337353 | None:intergenic |
| GTTGTATGATAAGTTAGTTA+AGG | 0.408759 | 4.1:+18337943 | MS.gene36487:CDS |
| CTGAGCACAAGCGCAATGTT+AGG | 0.424493 | 4.1:+18338176 | MS.gene36487:CDS |
| TGCCAATTTCTTCCGAAGAT+AGG | 0.425699 | 4.1:-18339861 | None:intergenic |
| GCAGCTCGACCAAGCCCAAC+AGG | 0.447516 | 4.1:-18338136 | None:intergenic |
| TGTTTAACTTGAAACCTGTT+GGG | 0.453678 | 4.1:+18338122 | MS.gene36487:CDS |
| GAATTAGGTTTAACGATGAC+GGG | 0.453984 | 4.1:+18337106 | None:intergenic |
| AGAGTCGCGACGGAATCTTT+AGG | 0.458235 | 4.1:+18337154 | MS.gene36487:CDS |
| CTGTTTAACTTGAAACCTGT+TGG | 0.458401 | 4.1:+18338121 | MS.gene36487:CDS |
| TTCTTTCAACACGTTGGGAT+TGG | 0.469706 | 4.1:-18338053 | None:intergenic |
| GGTGGTGCTGGTGATGGTGG+TGG | 0.472909 | 4.1:+18338085 | MS.gene36487:CDS |
| CGAAATTAAACTACGCAGAC+AGG | 0.473262 | 4.1:+18339802 | MS.gene36487:CDS |
| AGCCAGTCGTGCGAGAGAAA+AGG | 0.476028 | 4.1:+18339775 | MS.gene36487:CDS |
| CATGGTGGTGCTGGTGATGG+TGG | 0.477255 | 4.1:+18338082 | MS.gene36487:CDS |
| GAGTTGAAAGCTATTAAAGA+TGG | 0.477276 | 4.1:+18337884 | MS.gene36487:CDS |
| AACTTAAGCAAGCCTATCTT+CGG | 0.486326 | 4.1:+18339849 | MS.gene36487:CDS |
| CGCGTTGATATTCGGCGTCA+GGG | 0.499448 | 4.1:-18337312 | None:intergenic |
| CTATGCTGCATTGGAGAAGA+AGG | 0.501653 | 4.1:+18337916 | MS.gene36487:CDS |
| GAAAATGAACATGGTGGTGC+TGG | 0.510141 | 4.1:+18338073 | MS.gene36487:CDS |
| GGGAGAATTGTCTGATGAAG+AGG | 0.516669 | 4.1:+18337964 | MS.gene36487:CDS |
| GTCAGGGCCTGATAATTCTC+TGG | 0.517650 | 4.1:-18337296 | None:intergenic |
| ATCAGTGAGCTATGCTGCAT+TGG | 0.523981 | 4.1:+18337907 | MS.gene36487:CDS |
| GACGGGGACGGAGGCACCGT+CGG | 0.533538 | 4.1:+18337123 | MS.gene36487:CDS |
| GAAGAAATTGGCAGAACTGA+AGG | 0.534198 | 4.1:+18339871 | MS.gene36487:CDS |
| GCAGAACTGAAGGCCACTGT+TGG | 0.546526 | 4.1:+18339881 | MS.gene36487:CDS |
| AGGTTTAACGATGACGGGGA+CGG | 0.548885 | 4.1:+18337111 | None:intergenic |
| GCGACTCTCTTCTTCTCCGA+CGG | 0.562550 | 4.1:-18337139 | None:intergenic |
| CGAGCTGCTGGAGTAGTTGA+CGG | 0.566239 | 4.1:+18338151 | MS.gene36487:CDS |
| GAACATGGTGGTGCTGGTGA+TGG | 0.586272 | 4.1:+18338079 | MS.gene36487:CDS |
| CACAGAACCATCGAGGGTGT+TGG | 0.591588 | 4.1:+18337211 | MS.gene36487:CDS |
| AGATGCACCAACACCCTCGA+TGG | 0.631777 | 4.1:-18337218 | None:intergenic |
| TCGCGACGGAATCTTTAGGA+TGG | 0.640809 | 4.1:+18337158 | MS.gene36487:CDS |
| GAGATCGCGTGCATCGACAC+CGG | 0.655586 | 4.1:-18337380 | None:intergenic |
| TTTAACGATGACGGGGACGG+AGG | 0.656467 | 4.1:+18337114 | None:intergenic |
| GGAATCTTTAGGATGGCTAA+CGG | 0.658502 | 4.1:+18337165 | MS.gene36487:CDS |
| AAGAAGCACAGAACCATCGA+GGG | 0.672564 | 4.1:+18337205 | MS.gene36487:CDS |
| GGAGAAGAAGAGAGTCGCGA+CGG | 0.681156 | 4.1:+18337144 | MS.gene36487:CDS |
| AAAGAAGCACAGAACCATCG+AGG | 0.694787 | 4.1:+18337204 | MS.gene36487:CDS |
| AATTAGGTTTAACGATGACG+GGG | 0.716816 | 4.1:+18337107 | None:intergenic |
| CTCAGATTCAGATCCAACAG+TGG | 0.724935 | 4.1:-18339894 | None:intergenic |
| GTGTTGAAAGAAAATGAACA+TGG | 0.745569 | 4.1:+18338064 | MS.gene36487:CDS |
| TTGAAAGAAAATGAACATGG+TGG | 0.772755 | 4.1:+18338067 | MS.gene36487:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATTTTAATTGTTC+AGG | + | chr4.1:18337448-18337467 | MS.gene36487:intron | 10.0% |
| !! | AAAAAAAAAAAACTCTTTCT+AGG | + | chr4.1:18339492-18339511 | MS.gene36487:intron | 15.0% |
| !!! | TAATTGAATTGTTGATAATT+GGG | + | chr4.1:18337807-18337826 | MS.gene36487:intron | 15.0% |
| !!! | TTTAAAAATTTTGATTTGCA+GGG | + | chr4.1:18339739-18339758 | MS.gene36487:intron | 15.0% |
| !!! | TTTTAAAAATTTTGATTTGC+AGG | + | chr4.1:18339738-18339757 | MS.gene36487:intron | 15.0% |
| !! | AAACATAAAGTGAAAGAAAA+GGG | - | chr4.1:18337422-18337441 | None:intergenic | 20.0% |
| !! | AAGTAACAAGTAACAATAAT+AGG | - | chr4.1:18339608-18339627 | None:intergenic | 20.0% |
| !! | AATAATCTATGTGAATACAA+TGG | + | chr4.1:18338891-18338910 | MS.gene36487:intron | 20.0% |
| !! | ACCAAAATATGCTTTATATA+TGG | + | chr4.1:18338445-18338464 | MS.gene36487:intron | 20.0% |
| !! | CAATTATCAACAATTCAATT+AGG | - | chr4.1:18337808-18337827 | None:intergenic | 20.0% |
| !! | CCAAAATATGCTTTATATAT+GGG | + | chr4.1:18338446-18338465 | MS.gene36487:intron | 20.0% |
| !! | TAAAGATATAAGTGTATGTT+TGG | - | chr4.1:18337778-18337797 | None:intergenic | 20.0% |
| !! | TAATGACTTACTATAAGTAA+CGG | + | chr4.1:18339442-18339461 | MS.gene36487:intron | 20.0% |
| !! | TTGTATGATAAGTTAGTTAA+GGG | + | chr4.1:18337944-18337963 | MS.gene36487:CDS | 20.0% |
| !! | TTTGAATATAAATTTGAGTC+TGG | + | chr4.1:18337603-18337622 | MS.gene36487:intron | 20.0% |
| !!! | CAATGTTTTTGTTCTATATA+TGG | + | chr4.1:18338227-18338246 | MS.gene36487:intron | 20.0% |
| !!! | CTAATTGAATTGTTGATAAT+TGG | + | chr4.1:18337806-18337825 | MS.gene36487:intron | 20.0% |
| !!! | TGATTTTGTAAATTTGATTC+TGG | + | chr4.1:18337547-18337566 | MS.gene36487:intron | 20.0% |
| !!! | TTCTTTGAAAACTTAACTTT+TGG | + | chr4.1:18338284-18338303 | MS.gene36487:intron | 20.0% |
| !!! | TTGTCTTTTACATTTAAGTA+GGG | + | chr4.1:18339551-18339570 | MS.gene36487:intron | 20.0% |
| !!! | TTTGTCTTTTACATTTAAGT+AGG | + | chr4.1:18339550-18339569 | MS.gene36487:intron | 20.0% |
| !!! | TTTTTATCCATGATTATTCT+GGG | + | chr4.1:18339671-18339690 | MS.gene36487:intron | 20.0% |
| !!! | TTTTTGTTCTATATATGGTT+AGG | + | chr4.1:18338232-18338251 | MS.gene36487:intron | 20.0% |
| !!! | TTTTTTATCCATGATTATTC+TGG | + | chr4.1:18339670-18339689 | MS.gene36487:intron | 20.0% |
| ! | AGAATCAAAGCTCAAAATTT+AGG | + | chr4.1:18337670-18337689 | MS.gene36487:intron | 25.0% |
| ! | CTTAAATGTAAAAGACAAAC+AGG | - | chr4.1:18339549-18339568 | None:intergenic | 25.0% |
| ! | CTTTGTATGAAATGTGATTT+CGG | + | chr4.1:18338372-18338391 | MS.gene36487:intron | 25.0% |
| ! | GAAACATAAAGTGAAAGAAA+AGG | - | chr4.1:18337423-18337442 | None:intergenic | 25.0% |
| ! | GTTGTATGATAAGTTAGTTA+AGG | + | chr4.1:18337943-18337962 | MS.gene36487:CDS | 25.0% |
| ! | TACAGTGAGAAAAATTGATT+TGG | + | chr4.1:18337517-18337536 | MS.gene36487:intron | 25.0% |
| ! | TACGTATTACAAGTAAAACT+TGG | + | chr4.1:18338604-18338623 | MS.gene36487:intron | 25.0% |
| ! | TAGAATCAAAAAATTGAGTC+TGG | + | chr4.1:18337636-18337655 | MS.gene36487:intron | 25.0% |
| !! | AAAATTTGACTTAATCCAGT+AGG | - | chr4.1:18339352-18339371 | None:intergenic | 25.0% |
| !! | ACTGGATTAAGTCAAATTTT+TGG | + | chr4.1:18339352-18339371 | MS.gene36487:intron | 25.0% |
| !! | CCCATATATAAAGCATATTT+TGG | - | chr4.1:18338449-18338468 | None:intergenic | 25.0% |
| !!! | CTTTTAATTTTGGCTTTAGA+GGG | + | chr4.1:18339311-18339330 | MS.gene36487:intron | 25.0% |
| !!! | CTTTTGGATGATATTGATTT+TGG | + | chr4.1:18338300-18338319 | MS.gene36487:intron | 25.0% |
| !!! | TCTTCTAGAGCTTTTAATTT+TGG | + | chr4.1:18339301-18339320 | MS.gene36487:intron | 25.0% |
| !!! | TGTGTTTGTTGTTATGATTA+GGG | + | chr4.1:18337853-18337872 | MS.gene36487:intron | 25.0% |
| !!! | TGTTACTTGTTACTTTTTTC+CGG | + | chr4.1:18339613-18339632 | MS.gene36487:intron | 25.0% |
| !!! | TTTTAATTTTGGCTTTAGAG+GGG | + | chr4.1:18339312-18339331 | MS.gene36487:intron | 25.0% |
| AAAAACATCATCACTTCCAA+AGG | + | chr4.1:18337337-18337356 | MS.gene36487:CDS | 30.0% | |
| AAAAAGTCCAGAGAATTATC+AGG | + | chr4.1:18337289-18337308 | MS.gene36487:CDS | 30.0% | |
| AATCACTTTACTTTCAACTC+AGG | - | chr4.1:18337579-18337598 | None:intergenic | 30.0% | |
| AGTATCCTTCTTGTTAGAAT+TGG | + | chr4.1:18339228-18339247 | MS.gene36487:intron | 30.0% | |
| GAGTTGAAAGCTATTAAAGA+TGG | + | chr4.1:18337884-18337903 | MS.gene36487:CDS | 30.0% | |
| GTGTTGAAAGAAAATGAACA+TGG | + | chr4.1:18338064-18338083 | MS.gene36487:CDS | 30.0% | |
| GTTCTATATATGGTTAGGAT+AGG | + | chr4.1:18338237-18338256 | MS.gene36487:intron | 30.0% | |
| TAACTACTTGTGCTTAGTTT+GGG | + | chr4.1:18339157-18339176 | MS.gene36487:intron | 30.0% | |
| TAAGAAAATGTTTGAGAGAG+TGG | + | chr4.1:18338652-18338671 | MS.gene36487:intron | 30.0% | |
| TGTTAAAATTGCTCCAAAAG+TGG | + | chr4.1:18337750-18337769 | MS.gene36487:intron | 30.0% | |
| TGTTTATCATATCCCATTTG+TGG | - | chr4.1:18339093-18339112 | None:intergenic | 30.0% | |
| TTAACTACTTGTGCTTAGTT+TGG | + | chr4.1:18339156-18339175 | MS.gene36487:intron | 30.0% | |
| TTCAGCTTTCAATTCGAAAA+TGG | - | chr4.1:18337245-18337264 | None:intergenic | 30.0% | |
| TTGAAAGAAAATGAACATGG+TGG | + | chr4.1:18338067-18338086 | MS.gene36487:CDS | 30.0% | |
| TTTACTTTCAACTCAGGTTT+CGG | - | chr4.1:18337573-18337592 | None:intergenic | 30.0% | |
| ! | ATGATGATGATCAAGATTAC+AGG | + | chr4.1:18338707-18338726 | MS.gene36487:intron | 30.0% |
| ! | TAGTTTGGGAGTGTAAAATA+GGG | + | chr4.1:18339171-18339190 | MS.gene36487:intron | 30.0% |
| ! | TCATTTTCTTTCAACACGTT+GGG | - | chr4.1:18338061-18338080 | None:intergenic | 30.0% |
| ! | TGATAATTCTCTGGACTTTT+TGG | - | chr4.1:18337290-18337309 | None:intergenic | 30.0% |
| ! | TGATGATGATCAAGATTACA+GGG | + | chr4.1:18338708-18338727 | MS.gene36487:intron | 30.0% |
| ! | TTAGTTTGGGAGTGTAAAAT+AGG | + | chr4.1:18339170-18339189 | MS.gene36487:intron | 30.0% |
| ! | TTCATTTTCTTTCAACACGT+TGG | - | chr4.1:18338062-18338081 | None:intergenic | 30.0% |
| !! | GTGTGTTTGTTGTTATGATT+AGG | + | chr4.1:18337852-18337871 | MS.gene36487:intron | 30.0% |
| !! | TGTTTAACTTGAAACCTGTT+GGG | + | chr4.1:18338122-18338141 | MS.gene36487:CDS | 30.0% |
| !! | TTTGGAAGTGATGATGTTTT+TGG | - | chr4.1:18337338-18337357 | None:intergenic | 30.0% |
| !!! | ACTTTTGGAGCAATTTTAAC+AGG | - | chr4.1:18337751-18337770 | None:intergenic | 30.0% |
| !!! | GCTTTTAATTTTGGCTTTAG+AGG | + | chr4.1:18339310-18339329 | MS.gene36487:intron | 30.0% |
| !!! | GTTACTTGTTACTTTTTTCC+GGG | + | chr4.1:18339614-18339633 | MS.gene36487:intron | 30.0% |
| !!! | TTACTTGTTACTTTTTTCCG+GGG | + | chr4.1:18339615-18339634 | MS.gene36487:intron | 30.0% |
| AACTTAAGCAAGCCTATCTT+CGG | + | chr4.1:18339849-18339868 | MS.gene36487:CDS | 35.0% | |
| AAGTAGGGAATGATGAAGAT+GGG | + | chr4.1:18339566-18339585 | MS.gene36487:intron | 35.0% | |
| AAGTCATTACCTACCTCAAT+AGG | - | chr4.1:18339431-18339450 | None:intergenic | 35.0% | |
| AAGTGAAAGAAAAGGGAAAC+AGG | - | chr4.1:18337415-18337434 | None:intergenic | 35.0% | |
| ATAAAACACACACTCCTTCA+AGG | - | chr4.1:18338342-18338361 | None:intergenic | 35.0% | |
| ATATAGAAGTCCAGTGAGAT+TGG | + | chr4.1:18338749-18338768 | MS.gene36487:intron | 35.0% | |
| ATGTGCCAATTCTAACAAGA+AGG | - | chr4.1:18339236-18339255 | None:intergenic | 35.0% | |
| CCCTATTCCAATAAAAACTC+CGG | + | chr4.1:18337361-18337380 | MS.gene36487:CDS | 35.0% | |
| GCAATTACCCAGAATAATCA+TGG | - | chr4.1:18339681-18339700 | None:intergenic | 35.0% | |
| GTTCGAGGTAGAATAGATTA+TGG | + | chr4.1:18337692-18337711 | MS.gene36487:intron | 35.0% | |
| TAAGTAGGGAATGATGAAGA+TGG | + | chr4.1:18339565-18339584 | MS.gene36487:intron | 35.0% | |
| TATAAGTAACGGCTCTTTCT+AGG | + | chr4.1:18339453-18339472 | MS.gene36487:intron | 35.0% | |
| TATAGTGCTGTAACCTATTG+AGG | + | chr4.1:18339415-18339434 | MS.gene36487:intron | 35.0% | |
| TCGTTAAATTTGTGAGTCTG+TGG | + | chr4.1:18339702-18339721 | MS.gene36487:intron | 35.0% | |
| TCTTGTTAGAATTGGCACAT+AGG | + | chr4.1:18339236-18339255 | MS.gene36487:intron | 35.0% | |
| TGTAAAATAGGGCTGAGTTA+AGG | + | chr4.1:18339182-18339201 | MS.gene36487:intron | 35.0% | |
| TGTATGAAATGTGATTTCGG+AGG | + | chr4.1:18338375-18338394 | MS.gene36487:intron | 35.0% | |
| TTCTAACCTTGAAGCTTGAA+AGG | - | chr4.1:18338498-18338517 | None:intergenic | 35.0% | |
| TTTATTGGAATAGGGACCTT+TGG | - | chr4.1:18337356-18337375 | None:intergenic | 35.0% | |
| ! | AAGCTCAAAATTTAGGTTCG+AGG | + | chr4.1:18337677-18337696 | MS.gene36487:intron | 35.0% |
| ! | ACCGGAGTTTTTATTGGAAT+AGG | - | chr4.1:18337365-18337384 | None:intergenic | 35.0% |
| ! | CCGGAGTTTTTATTGGAATA+GGG | - | chr4.1:18337364-18337383 | None:intergenic | 35.0% |
| ! | CTCTAGAAGAGTGAATAAAC+GGG | - | chr4.1:18339291-18339310 | None:intergenic | 35.0% |
| ! | CTGTCTGCGTAGTTTAATTT+CGG | - | chr4.1:18339804-18339823 | None:intergenic | 35.0% |
| ! | GAAGTGTCAAAATTTCTGTG+AGG | + | chr4.1:18338515-18338534 | MS.gene36487:intron | 35.0% |
| ! | TTTGCTACTTCTGTTAACCT+AGG | - | chr4.1:18338833-18338852 | None:intergenic | 35.0% |
| !! | AGGAGTGTGTGTTTTATGTT+TGG | + | chr4.1:18338345-18338364 | MS.gene36487:intron | 35.0% |
| !! | AGTGATAGCAATGTTTTGAG+AGG | + | chr4.1:18338469-18338488 | MS.gene36487:intron | 35.0% |
| !! | CTGTTTAACTTGAAACCTGT+TGG | + | chr4.1:18338121-18338140 | MS.gene36487:CDS | 35.0% |
| !! | GCTCTAGAAGAGTGAATAAA+CGG | - | chr4.1:18339292-18339311 | None:intergenic | 35.0% |
| !! | TGGAGCAATTTTAACAGGTT+TGG | - | chr4.1:18337746-18337765 | None:intergenic | 35.0% |
| !! | TGTATGTTTGGTTCCACTTT+TGG | - | chr4.1:18337766-18337785 | None:intergenic | 35.0% |
| !!! | TACTTGTTACTTTTTTCCGG+GGG | + | chr4.1:18339616-18339635 | MS.gene36487:intron | 35.0% |
| AATACCCACCTCGTAATTCA+AGG | + | chr4.1:18338965-18338984 | MS.gene36487:intron | 40.0% | |
| AGCCTATCTTCGGAAGAAAT+TGG | + | chr4.1:18339859-18339878 | MS.gene36487:CDS | 40.0% | |
| AGGTTTCCTTTCAAGCTTCA+AGG | + | chr4.1:18338489-18338508 | MS.gene36487:intron | 40.0% | |
| AGTAGGGAATGATGAAGATG+GGG | + | chr4.1:18339567-18339586 | MS.gene36487:intron | 40.0% | |
| ATACCAGTTGCAAGAATCCT+AGG | + | chr4.1:18338813-18338832 | MS.gene36487:intron | 40.0% | |
| ATGCGGAAGCTAAATCTGTT+TGG | + | chr4.1:18338551-18338570 | MS.gene36487:intron | 40.0% | |
| CAAAAAAGTCCAACACTTCC+GGG | + | chr4.1:18339002-18339021 | MS.gene36487:intron | 40.0% | |
| CGAAATTAAACTACGCAGAC+AGG | + | chr4.1:18339802-18339821 | MS.gene36487:CDS | 40.0% | |
| CGAGGTAGAATAGATTATGG+AGG | + | chr4.1:18337695-18337714 | MS.gene36487:intron | 40.0% | |
| CTGTAGAATCAAACACACAG+CGG | - | chr4.1:18337502-18337521 | None:intergenic | 40.0% | |
| GAAGAAATTGGCAGAACTGA+AGG | + | chr4.1:18339871-18339890 | MS.gene36487:CDS | 40.0% | |
| GCAAAAAAGTCCAACACTTC+CGG | + | chr4.1:18339001-18339020 | MS.gene36487:intron | 40.0% | |
| GCTACACATAGAGAAAATCC+CGG | - | chr4.1:18339023-18339042 | None:intergenic | 40.0% | |
| TAACCTAGGATTCTTGCAAC+TGG | - | chr4.1:18338819-18338838 | None:intergenic | 40.0% | |
| TATCCCATTTGTGGATCAAC+TGG | - | chr4.1:18339084-18339103 | None:intergenic | 40.0% | |
| TCGGAGGAATTAATGTCGTT+TGG | + | chr4.1:18338391-18338410 | MS.gene36487:intron | 40.0% | |
| TGCCAATTTCTTCCGAAGAT+AGG | - | chr4.1:18339864-18339883 | None:intergenic | 40.0% | |
| TTCTTTCAACACGTTGGGAT+TGG | - | chr4.1:18338056-18338075 | None:intergenic | 40.0% | |
| TTGTGAGTCTGTGGCTAATT+TGG | + | chr4.1:18339711-18339730 | MS.gene36487:intron | 40.0% | |
| ! | AAAACTTGGTGACAGAGTGA+GGG | + | chr4.1:18338618-18338637 | MS.gene36487:intron | 40.0% |
| ! | ATCGACACCGGAGTTTTTAT+TGG | - | chr4.1:18337371-18337390 | None:intergenic | 40.0% |
| ! | TAAAACTTGGTGACAGAGTG+AGG | + | chr4.1:18338617-18338636 | MS.gene36487:intron | 40.0% |
| !! | GGAATCTTTAGGATGGCTAA+CGG | + | chr4.1:18337165-18337184 | MS.gene36487:CDS | 40.0% |
| !!! | AGTGTTGGACTTTTTTGCCA+TGG | - | chr4.1:18338999-18339018 | None:intergenic | 40.0% |
| !!! | GTTTTTGGCGCGTTGATATT+CGG | - | chr4.1:18337323-18337342 | None:intergenic | 40.0% |
| AACTTGAAACCTGTTGGGCT+TGG | + | chr4.1:18338127-18338146 | MS.gene36487:CDS | 45.0% | |
| AATTCAAGGTGGACACACCA+TGG | + | chr4.1:18338979-18338998 | MS.gene36487:intron | 45.0% | |
| AGCAAGTCTCTGAGTGGATA+AGG | + | chr4.1:18339040-18339059 | MS.gene36487:intron | 45.0% | |
| ATCAGTGAGCTATGCTGCAT+TGG | + | chr4.1:18337907-18337926 | MS.gene36487:CDS | 45.0% | |
| ATGTGTAGCAAGTCTCTGAG+TGG | + | chr4.1:18339034-18339053 | MS.gene36487:intron | 45.0% | |
| CAGCCAGTTGATCCACAAAT+GGG | + | chr4.1:18339078-18339097 | MS.gene36487:intron | 45.0% | |
| CTATGCTGCATTGGAGAAGA+AGG | + | chr4.1:18337916-18337935 | MS.gene36487:CDS | 45.0% | |
| CTCAGATTCAGATCCAACAG+TGG | - | chr4.1:18339897-18339916 | None:intergenic | 45.0% | |
| GGGAGAATTGTCTGATGAAG+AGG | + | chr4.1:18337964-18337983 | MS.gene36487:CDS | 45.0% | |
| GTCAGTTGTTGAATGCCTAC+TGG | + | chr4.1:18339334-18339353 | MS.gene36487:intron | 45.0% | |
| GTGCTGTAACCTATTGAGGT+AGG | + | chr4.1:18339419-18339438 | MS.gene36487:intron | 45.0% | |
| TCAGCCAGTTGATCCACAAA+TGG | + | chr4.1:18339077-18339096 | MS.gene36487:intron | 45.0% | |
| TCCACCTTGAATTACGAGGT+GGG | - | chr4.1:18338972-18338991 | None:intergenic | 45.0% | |
| TGTGTCCACCTTGAATTACG+AGG | - | chr4.1:18338976-18338995 | None:intergenic | 45.0% | |
| ! | AAACTTGGTGACAGAGTGAG+GGG | + | chr4.1:18338619-18338638 | MS.gene36487:intron | 45.0% |
| ! | AAAGAAGCACAGAACCATCG+AGG | + | chr4.1:18337204-18337223 | MS.gene36487:CDS | 45.0% |
| ! | AAAGTGCTTGTGAGCCTTGA+AGG | + | chr4.1:18338325-18338344 | MS.gene36487:intron | 45.0% |
| ! | AAGAAGCACAGAACCATCGA+GGG | + | chr4.1:18337205-18337224 | MS.gene36487:CDS | 45.0% |
| ! | AGAGAAAATCCCGGAAGTGT+TGG | - | chr4.1:18339014-18339033 | None:intergenic | 45.0% |
| ! | GAAAATGAACATGGTGGTGC+TGG | + | chr4.1:18338073-18338092 | MS.gene36487:CDS | 45.0% |
| ! | TCGATGGTTCTGTGCTTCTT+TGG | - | chr4.1:18337205-18337224 | None:intergenic | 45.0% |
| !!! | TGTTACTTTTTTCCGGGGGT+GGG | + | chr4.1:18339620-18339639 | MS.gene36487:intron | 45.0% |
| !!! | TTGTTACTTTTTTCCGGGGG+TGG | + | chr4.1:18339619-18339638 | MS.gene36487:intron | 45.0% |
| ACCCACCTCGTAATTCAAGG+TGG | + | chr4.1:18338968-18338987 | MS.gene36487:intron | 50.0% | |
| AGAGTCGCGACGGAATCTTT+AGG | + | chr4.1:18337154-18337173 | MS.gene36487:CDS | 50.0% | |
| CTGAGCACAAGCGCAATGTT+AGG | + | chr4.1:18338176-18338195 | MS.gene36487:CDS | 50.0% | |
| GAGGAGCTTGTGCTTCAATG+CGG | + | chr4.1:18338534-18338553 | MS.gene36487:intron | 50.0% | |
| GGAATGATGAAGATGGGGCT+GGG | + | chr4.1:18339572-18339591 | MS.gene36487:intron | 50.0% | |
| GTCAGGGCCTGATAATTCTC+TGG | - | chr4.1:18337299-18337318 | None:intergenic | 50.0% | |
| GTCCACCTTGAATTACGAGG+TGG | - | chr4.1:18338973-18338992 | None:intergenic | 50.0% | |
| ! | TCGCGACGGAATCTTTAGGA+TGG | + | chr4.1:18337158-18337177 | MS.gene36487:CDS | 50.0% |
| AGATGCACCAACACCCTCGA+TGG | - | chr4.1:18337221-18337240 | None:intergenic | 55.0% | |
| AGCCAGTCGTGCGAGAGAAA+AGG | + | chr4.1:18339775-18339794 | MS.gene36487:CDS | 55.0% | |
| CGAGCTGCTGGAGTAGTTGA+CGG | + | chr4.1:18338151-18338170 | MS.gene36487:CDS | 55.0% | |
| GAAGCAGCGACCAATCTCAC+TGG | - | chr4.1:18338762-18338781 | None:intergenic | 55.0% | |
| GCAGAACTGAAGGCCACTGT+TGG | + | chr4.1:18339881-18339900 | MS.gene36487:CDS | 55.0% | |
| GCGACTCTCTTCTTCTCCGA+CGG | - | chr4.1:18337142-18337161 | None:intergenic | 55.0% | |
| GGAGAAGAAGAGAGTCGCGA+CGG | + | chr4.1:18337144-18337163 | MS.gene36487:CDS | 55.0% | |
| GGGAATGATGAAGATGGGGC+TGG | + | chr4.1:18339571-18339590 | MS.gene36487:intron | 55.0% | |
| ! | AGCCTTTTCTCTCGCACGAC+TGG | - | chr4.1:18339780-18339799 | None:intergenic | 55.0% |
| ! | CACAGAACCATCGAGGGTGT+TGG | + | chr4.1:18337211-18337230 | MS.gene36487:CDS | 55.0% |
| ! | CGCGTTGATATTCGGCGTCA+GGG | - | chr4.1:18337315-18337334 | None:intergenic | 55.0% |
| ! | GGGTGGGAGCTTGAGGTTTT+TGG | + | chr4.1:18339636-18339655 | MS.gene36487:intron | 55.0% |
| !! | GAACATGGTGGTGCTGGTGA+TGG | + | chr4.1:18338079-18338098 | MS.gene36487:CDS | 55.0% |
| AAACCTCAAGCTCCCACCCC+CGG | - | chr4.1:18339635-18339654 | None:intergenic | 60.0% | |
| ! | GAGATCGCGTGCATCGACAC+CGG | - | chr4.1:18337383-18337402 | None:intergenic | 60.0% |
| ! | GCGCGTTGATATTCGGCGTC+AGG | - | chr4.1:18337316-18337335 | None:intergenic | 60.0% |
| !! | CATGGTGGTGCTGGTGATGG+TGG | + | chr4.1:18338082-18338101 | MS.gene36487:CDS | 60.0% |
| GCAGCTCGACCAAGCCCAAC+AGG | - | chr4.1:18338139-18338158 | None:intergenic | 65.0% | |
| TTTCCGGGGGTGGGAGCTTG+AGG | + | chr4.1:18339629-18339648 | MS.gene36487:intron | 65.0% | |
| ! | GTTGGGCTTGGTCGAGCTGC+TGG | + | chr4.1:18338139-18338158 | MS.gene36487:CDS | 65.0% |
| !! | GGTGGTGCTGGTGATGGTGG+TGG | + | chr4.1:18338085-18338104 | MS.gene36487:CDS | 65.0% |
| !! | GACGGGGACGGAGGCACCGT+CGG | + | chr4.1:18337123-18337142 | MS.gene36487:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18337121 | 18339931 | 18337121 | ID=MS.gene36487 |
| chr4.1 | mRNA | 18337121 | 18339931 | 18337121 | ID=MS.gene36487.t1;Parent=MS.gene36487 |
| chr4.1 | exon | 18337121 | 18337404 | 18337121 | ID=MS.gene36487.t1.exon1;Parent=MS.gene36487.t1 |
| chr4.1 | CDS | 18337121 | 18337404 | 18337121 | ID=cds.MS.gene36487.t1;Parent=MS.gene36487.t1 |
| chr4.1 | exon | 18337874 | 18338197 | 18337874 | ID=MS.gene36487.t1.exon2;Parent=MS.gene36487.t1 |
| chr4.1 | CDS | 18337874 | 18338197 | 18337874 | ID=cds.MS.gene36487.t1;Parent=MS.gene36487.t1 |
| chr4.1 | exon | 18339760 | 18339931 | 18339760 | ID=MS.gene36487.t1.exon3;Parent=MS.gene36487.t1 |
| chr4.1 | CDS | 18339760 | 18339931 | 18339760 | ID=cds.MS.gene36487.t1;Parent=MS.gene36487.t1 |
| Gene Sequence |
| Protein sequence |
