Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36540.t1 | GAU46611.1 | 54.4 | 316 | 89 | 4 | 2 | 272 | 335 | 640 | 4.70E-83 | 318.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36540.t1 | Q75HY5 | 32.8 | 320 | 155 | 7 | 3 | 269 | 421 | 733 | 3.8e-33 | 143.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36540.t1 | A0A392MP39 | 71.9 | 324 | 41 | 3 | 1 | 275 | 6 | 328 | 5.0e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene36540 | 0.807836 | 4.16E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene36540 | 0.815572 | 8.63E-52 | -1.69E-46 |
| MS.gene05659 | MS.gene36540 | 0.801798 | 7.60E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene36540 | 0.805359 | 1.39E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene36540 | 0.813046 | 3.12E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene36540 | 0.802069 | 6.68E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene36540 | 0.823957 | 1.05E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene36540 | 0.803893 | 2.80E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene36540 | 0.802822 | 4.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36540.t1 | AT3G42170 | 28.475 | 295 | 155 | 4 | 20 | 269 | 391 | 674 | 1.30e-33 | 131 |
| MS.gene36540.t1 | AT3G42170 | 28.475 | 295 | 155 | 4 | 20 | 269 | 369 | 652 | 1.32e-33 | 131 |
Find 51 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCAACTTGATGTTTATT+TGG | 0.143642 | 8.2:-76875248 | MS.gene36540:CDS |
| AACATCAAGTTGAGACTTTC+CGG | 0.224418 | 8.2:+76875255 | None:intergenic |
| TTCAATGGTGGAAGGAAAAT+TGG | 0.232100 | 8.2:-76875174 | MS.gene36540:CDS |
| AGACATTCGGATGCTGCTTC+TGG | 0.286737 | 8.2:+76873054 | None:intergenic |
| TCAGATGCAACAGTAGTAAT+TGG | 0.290968 | 8.2:+76875103 | None:intergenic |
| CAAAATGAGCATTTAAGAAT+TGG | 0.295854 | 8.2:-76874046 | MS.gene36540:CDS |
| TATAGTGTTGTGCTTGCTTT+AGG | 0.318963 | 8.2:-76875636 | MS.gene36540:CDS |
| TGTACTCGCAATTGGCTTCA+TGG | 0.321398 | 8.2:-76875001 | MS.gene36540:CDS |
| AACATCAGCTGGTTTGTCTT+TGG | 0.331437 | 8.2:-76875996 | MS.gene36540:CDS |
| GTTTAAAGATTTATCTCTAA+TGG | 0.332088 | 8.2:-76875146 | MS.gene36540:CDS |
| CTTTGATTTGTACTCGCAAT+TGG | 0.367693 | 8.2:-76875009 | MS.gene36540:CDS |
| TAGTGAAGTTTGAAAAGTAC+TGG | 0.389491 | 8.2:-76875665 | MS.gene36540:CDS |
| AAGGAATGCATTGAACTCAT+TGG | 0.428043 | 8.2:-76876028 | MS.gene36540:CDS |
| TGAGATTGAGGAGAGACATT+CGG | 0.460846 | 8.2:+76873041 | None:intergenic |
| CAACAACTTGCAACTTCTAC+CGG | 0.474920 | 8.2:-76875274 | MS.gene36540:CDS |
| TCTAATGGCTCGTGATGTGT+TGG | 0.482300 | 8.2:-76875131 | MS.gene36540:CDS |
| AAGGTAGACAGCGTCATCCT+TGG | 0.489505 | 8.2:+76875600 | None:intergenic |
| AGGTAGACAGCGTCATCCTT+GGG | 0.496216 | 8.2:+76875601 | None:intergenic |
| CTGCGGCGCTTCTGAGATTG+AGG | 0.498183 | 8.2:+76873029 | None:intergenic |
| GATTCAGTGTGTCTTGATTG+AGG | 0.500032 | 8.2:-76875736 | MS.gene36540:CDS |
| ATGACTTGAATATTCTTCAA+TGG | 0.505459 | 8.2:-76875189 | MS.gene36540:CDS |
| AAGGATGACGCTGTCTACCT+TGG | 0.510576 | 8.2:-76875598 | MS.gene36540:CDS |
| CTAATGGCTCGTGATGTGTT+GGG | 0.513825 | 8.2:-76875130 | MS.gene36540:CDS |
| TTATTTGGATGAGCCAAGCT+TGG | 0.515259 | 8.2:-76875233 | MS.gene36540:CDS |
| TCTGAATCAGCTTTAAGCAT+TGG | 0.515977 | 8.2:-76875085 | MS.gene36540:CDS |
| CTTGGAATATTGTTACTCAA+AGG | 0.518931 | 8.2:-76875580 | MS.gene36540:CDS |
| ATCTCAGAAGCGCCGCAGAT+GGG | 0.529198 | 8.2:-76873024 | MS.gene36540:intron |
| TCTCCTTACTTTGAAAACAA+AGG | 0.533951 | 8.2:+76874015 | None:intergenic |
| GAATATTCTTCAATGGTGGA+AGG | 0.545415 | 8.2:-76875182 | MS.gene36540:CDS |
| AATCTCAGAAGCGCCGCAGA+TGG | 0.546253 | 8.2:-76873025 | MS.gene36540:CDS |
| ATTCAGTGTGTCTTGATTGA+GGG | 0.550751 | 8.2:-76875735 | MS.gene36540:CDS |
| TGATAAGTCAAATCCAAGCT+TGG | 0.553107 | 8.2:+76875220 | None:intergenic |
| ACTTTGAATTGAGAGGTAAG+TGG | 0.558249 | 8.2:+76875552 | None:intergenic |
| GGTGGAAGGAAAATTGGTGC+AGG | 0.559177 | 8.2:-76875168 | MS.gene36540:CDS |
| GGTGGTGTTGAAACATCAGC+TGG | 0.559198 | 8.2:-76876007 | MS.gene36540:CDS |
| ACTTGAATATTCTTCAATGG+TGG | 0.563575 | 8.2:-76875186 | MS.gene36540:CDS |
| TTCTTCAACTTTGAATTGAG+AGG | 0.567845 | 8.2:+76875545 | None:intergenic |
| ACAAGCTTTGAGTGAGACCA+TGG | 0.570142 | 8.2:+76875433 | None:intergenic |
| AGAAAAGTGTCTAGTTCCCA+TGG | 0.578514 | 8.2:-76875450 | MS.gene36540:CDS |
| TAGGAGCGGTCCTTGACCCA+AGG | 0.586071 | 8.2:-76875617 | MS.gene36540:CDS |
| CTTTGGATGTGTCTACAAGA+TGG | 0.588227 | 8.2:-76875979 | MS.gene36540:CDS |
| CTTACTTTGAAAACAAAGGA+CGG | 0.588793 | 8.2:+76874019 | None:intergenic |
| ACAGCGTCATCCTTGGGTCA+AGG | 0.607789 | 8.2:+76875607 | None:intergenic |
| TTGAAGAATAGTTCTCAAAG+AGG | 0.608261 | 8.2:+76875502 | None:intergenic |
| CTTTGAGTAACAATATTCCA+AGG | 0.615068 | 8.2:+76875581 | None:intergenic |
| AGACAAGGTTGTTAAAAGCA+TGG | 0.620007 | 8.2:-76875700 | MS.gene36540:CDS |
| AGTGAAGTTTGAAAAGTACT+GGG | 0.634478 | 8.2:-76875664 | MS.gene36540:CDS |
| TGTTGTGCTTGCTTTAGGAG+CGG | 0.638470 | 8.2:-76875631 | MS.gene36540:CDS |
| GAATGCATTGAACTCATTGG+TGG | 0.649542 | 8.2:-76876025 | MS.gene36540:CDS |
| CAAGCTTTGAGTGAGACCAT+GGG | 0.700339 | 8.2:+76875434 | None:intergenic |
| GGGTGTGAAAGATGAAGACA+AGG | 0.719453 | 8.2:-76875715 | MS.gene36540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGCAAAAAATATAAAT+TGG | + | chr8.2:76873140-76873159 | None:intergenic | 10.0% |
| !! | TTAACTTTGAATAATATATT+AGG | - | chr8.2:76873587-76873606 | MS.gene36540:intron | 10.0% |
| !!! | ATTTATATTTTTTGCAAATT+TGG | - | chr8.2:76873140-76873159 | MS.gene36540:intron | 10.0% |
| !! | AAAAAATATAAATTGGAAGT+AGG | + | chr8.2:76873133-76873152 | None:intergenic | 15.0% |
| !! | AAGTTAAAATTGAGTTAATA+AGG | - | chr8.2:76874995-76875014 | MS.gene36540:CDS | 15.0% |
| !! | GTGTAAAAAAATAAATATTG+TGG | + | chr8.2:76874381-76874400 | None:intergenic | 15.0% |
| !!! | GTATATTTGTTAATAACAAT+TGG | - | chr8.2:76875215-76875234 | MS.gene36540:CDS | 15.0% |
| !!! | TTTTATATGTTTACTACTTT+AGG | + | chr8.2:76874927-76874946 | None:intergenic | 15.0% |
| !!! | TTTTGTAATTTGTTTTATGT+TGG | - | chr8.2:76875156-76875175 | MS.gene36540:CDS | 15.0% |
| !!! | TTTTTTGTCTAAAGTTTTTA+AGG | - | chr8.2:76874727-76874746 | MS.gene36540:intron | 15.0% |
| !! | AAATATTGTGGAATAAAACT+AGG | + | chr8.2:76874369-76874388 | None:intergenic | 20.0% |
| !! | AACAACAAAATTCTTAAAAG+CGG | + | chr8.2:76875768-76875787 | None:intergenic | 20.0% |
| !! | ATATATATGTTGGAATTGAA+AGG | - | chr8.2:76875817-76875836 | MS.gene36540:intron | 20.0% |
| !! | GTAGTAAACATATAAAATGA+AGG | - | chr8.2:76874930-76874949 | MS.gene36540:intron | 20.0% |
| !! | GTTTAAAGATTTATCTCTAA+TGG | - | chr8.2:76873755-76873774 | MS.gene36540:intron | 20.0% |
| !! | TTGCTAACAAAAAAATTGTT+TGG | - | chr8.2:76874310-76874329 | MS.gene36540:intron | 20.0% |
| !!! | AAATTATTTCTAGTGAAGAA+AGG | + | chr8.2:76874416-76874435 | None:intergenic | 20.0% |
| !!! | TTTTCATGATGACAATTATA+AGG | - | chr8.2:76873007-76873026 | MS.gene36540:intron | 20.0% |
| ! | AAATTGTTTGGATTGCAAAA+AGG | - | chr8.2:76874322-76874341 | MS.gene36540:intron | 25.0% |
| ! | AACAAAATTAGTGTAATCGA+GGG | + | chr8.2:76875675-76875694 | None:intergenic | 25.0% |
| ! | AATTGAGTTAATAAGGATGT+TGG | - | chr8.2:76875002-76875021 | MS.gene36540:CDS | 25.0% |
| ! | ATATAAATTGGAAGTAGGAT+AGG | + | chr8.2:76873128-76873147 | None:intergenic | 25.0% |
| ! | ATGACTTGAATATTCTTCAA+TGG | - | chr8.2:76873712-76873731 | MS.gene36540:intron | 25.0% |
| ! | ATTACATAGACGATTAACTT+AGG | - | chr8.2:76875072-76875091 | MS.gene36540:CDS | 25.0% |
| ! | ATTGCCATATTAATATTGAC+AGG | + | chr8.2:76874194-76874213 | None:intergenic | 25.0% |
| ! | CAAAATGAGCATTTAAGAAT+TGG | - | chr8.2:76874855-76874874 | MS.gene36540:intron | 25.0% |
| ! | CTTCATCAATTATCAACAAT+AGG | + | chr8.2:76874267-76874286 | None:intergenic | 25.0% |
| ! | TCTAACTAACTAACACAAAA+TGG | + | chr8.2:76874123-76874142 | None:intergenic | 25.0% |
| ! | TGGAGAAAAAAAAAAAGAGA+CGG | - | chr8.2:76875235-76875254 | MS.gene36540:CDS | 25.0% |
| ! | TGGTCTATCTATATATATGT+TGG | - | chr8.2:76875807-76875826 | MS.gene36540:intron | 25.0% |
| ! | TTACATAGACGATTAACTTA+GGG | - | chr8.2:76875073-76875092 | MS.gene36540:CDS | 25.0% |
| !!! | GTAAGGAGAATATCTTTTTT+TGG | - | chr8.2:76874900-76874919 | MS.gene36540:intron | 25.0% |
| !!! | TGAGACTTATTTTATGTTGT+TGG | - | chr8.2:76875128-76875147 | MS.gene36540:CDS | 25.0% |
| AAAAAGAATATACCCATCTG+CGG | + | chr8.2:76875892-76875911 | None:intergenic | 30.0% | |
| ACTTGAATATTCTTCAATGG+TGG | - | chr8.2:76873715-76873734 | MS.gene36540:intron | 30.0% | |
| ATTTAGACTTGTGTTCACAA+GGG | - | chr8.2:76875518-76875537 | MS.gene36540:CDS | 30.0% | |
| CAAAAAATATTTGCAGAGCT+TGG | - | chr8.2:76874442-76874461 | MS.gene36540:intron | 30.0% | |
| CAACAAAATTAGTGTAATCG+AGG | + | chr8.2:76875676-76875695 | None:intergenic | 30.0% | |
| CCAAAGTGATAGCTTAATAT+TGG | + | chr8.2:76874789-76874808 | None:intergenic | 30.0% | |
| CCAATATTAAGCTATCACTT+TGG | - | chr8.2:76874786-76874805 | MS.gene36540:intron | 30.0% | |
| CTTGGAATATTGTTACTCAA+AGG | - | chr8.2:76873321-76873340 | MS.gene36540:intron | 30.0% | |
| CTTTGAGTAACAATATTCCA+AGG | + | chr8.2:76873323-76873342 | None:intergenic | 30.0% | |
| GCACTGTTGTTATAATTGTT+TGG | - | chr8.2:76874286-76874305 | MS.gene36540:intron | 30.0% | |
| GGAGAAAAAAAAAAAGAGAC+GGG | - | chr8.2:76875236-76875255 | MS.gene36540:CDS | 30.0% | |
| GTCTCAACTTGATGTTTATT+TGG | - | chr8.2:76873653-76873672 | MS.gene36540:intron | 30.0% | |
| TAATAGACATTTGATGCTTC+AGG | + | chr8.2:76875056-76875075 | None:intergenic | 30.0% | |
| TATGTTGGAATTGAAAGGAA+CGG | - | chr8.2:76875822-76875841 | MS.gene36540:intron | 30.0% | |
| TCACATACTAATTACCTTCA+TGG | - | chr8.2:76873952-76873971 | MS.gene36540:intron | 30.0% | |
| TCCTCCTGTCAATATTAATA+TGG | - | chr8.2:76874187-76874206 | MS.gene36540:intron | 30.0% | |
| TGAGAGAGATGATTGAATAT+CGG | + | chr8.2:76875547-76875566 | None:intergenic | 30.0% | |
| TTCATATCAGTTATCAGTTG+TGG | - | chr8.2:76875787-76875806 | MS.gene36540:intron | 30.0% | |
| TTCTTCAACTTTGAATTGAG+AGG | + | chr8.2:76873359-76873378 | None:intergenic | 30.0% | |
| TTGAAGAATAGTTCTCAAAG+AGG | + | chr8.2:76873402-76873421 | None:intergenic | 30.0% | |
| TTTATTGTCGAAAAATGTGG+AGG | - | chr8.2:76873869-76873888 | MS.gene36540:intron | 30.0% | |
| ! | AAATGGTTCTATCCAAAAGA+AGG | + | chr8.2:76874595-76874614 | None:intergenic | 30.0% |
| ! | CTCGATTACACTAATTTTGT+TGG | - | chr8.2:76875674-76875693 | MS.gene36540:CDS | 30.0% |
| ! | CTTACTTTGAAAACAAAGGA+CGG | + | chr8.2:76874885-76874904 | None:intergenic | 30.0% |
| ! | CTTTTGGATAGAACCATTTA+GGG | - | chr8.2:76874596-76874615 | MS.gene36540:intron | 30.0% |
| ! | TAGTGAAGTTTGAAAAGTAC+TGG | - | chr8.2:76873236-76873255 | MS.gene36540:intron | 30.0% |
| ! | TCTCCTTACTTTGAAAACAA+AGG | + | chr8.2:76874889-76874908 | None:intergenic | 30.0% |
| ! | TCTTTTGGATAGAACCATTT+AGG | - | chr8.2:76874595-76874614 | MS.gene36540:intron | 30.0% |
| !! | AGTGAAGTTTGAAAAGTACT+GGG | - | chr8.2:76873237-76873256 | MS.gene36540:intron | 30.0% |
| !! | CCACATTTTTCGACAATAAA+CGG | + | chr8.2:76873869-76873888 | None:intergenic | 30.0% |
| AAGGAATGCATTGAACTCAT+TGG | - | chr8.2:76872873-76872892 | MS.gene36540:CDS | 35.0% | |
| ACTCTAGACTTTACTTCAAG+TGG | - | chr8.2:76874472-76874491 | MS.gene36540:intron | 35.0% | |
| ACTTTGAATTGAGAGGTAAG+TGG | + | chr8.2:76873352-76873371 | None:intergenic | 35.0% | |
| AGACAAGGTTGTTAAAAGCA+TGG | - | chr8.2:76873201-76873220 | MS.gene36540:intron | 35.0% | |
| AGGTTTGTGGTCTCATAAAA+TGG | + | chr8.2:76873091-76873110 | None:intergenic | 35.0% | |
| ATAGAACAGCAAAACCATGA+AGG | + | chr8.2:76873969-76873988 | None:intergenic | 35.0% | |
| ATTCAGTGTGTCTTGATTGA+GGG | - | chr8.2:76873166-76873185 | MS.gene36540:intron | 35.0% | |
| CCGTTTATTGTCGAAAAATG+TGG | - | chr8.2:76873866-76873885 | MS.gene36540:intron | 35.0% | |
| GATTTAGACTTGTGTTCACA+AGG | - | chr8.2:76875517-76875536 | MS.gene36540:CDS | 35.0% | |
| GCATTCTATTACATTGAAGC+AGG | - | chr8.2:76874688-76874707 | MS.gene36540:intron | 35.0% | |
| GCCATATTAATATTGACAGG+AGG | + | chr8.2:76874191-76874210 | None:intergenic | 35.0% | |
| TAAAACCAACAGCCATATAC+CGG | + | chr8.2:76874498-76874517 | None:intergenic | 35.0% | |
| TAATAAGGATGTTGGATGCA+TGG | - | chr8.2:76875010-76875029 | MS.gene36540:CDS | 35.0% | |
| TAGTTAACTACCGTTGAGTA+GGG | + | chr8.2:76875412-76875431 | None:intergenic | 35.0% | |
| TATAGTGTTGTGCTTGCTTT+AGG | - | chr8.2:76873265-76873284 | MS.gene36540:intron | 35.0% | |
| TCAGATGCAACAGTAGTAAT+TGG | + | chr8.2:76873801-76873820 | None:intergenic | 35.0% | |
| TCTATTACATTGAAGCAGGA+AGG | - | chr8.2:76874692-76874711 | MS.gene36540:intron | 35.0% | |
| TGATAAGTCAAATCCAAGCT+TGG | + | chr8.2:76873684-76873703 | None:intergenic | 35.0% | |
| ! | AAATCTGAAGCAACACAGAA+CGG | + | chr8.2:76875621-76875640 | None:intergenic | 35.0% |
| ! | ATACTCATCTTGCCTTCTTT+TGG | - | chr8.2:76874580-76874599 | MS.gene36540:intron | 35.0% |
| ! | GAATATTCTTCAATGGTGGA+AGG | - | chr8.2:76873719-76873738 | MS.gene36540:intron | 35.0% |
| ! | TTCAATGGTGGAAGGAAAAT+TGG | - | chr8.2:76873727-76873746 | MS.gene36540:intron | 35.0% |
| !! | AACATCAAGTTGAGACTTTC+CGG | + | chr8.2:76873649-76873668 | None:intergenic | 35.0% |
| !! | CTTCATGGTTTTACTAGATC+AGG | - | chr8.2:76873915-76873934 | MS.gene36540:intron | 35.0% |
| !! | CTTTGATTTGTACTCGCAAT+TGG | - | chr8.2:76873892-76873911 | MS.gene36540:intron | 35.0% |
| !! | TCTGAATCAGCTTTAAGCAT+TGG | - | chr8.2:76873816-76873835 | MS.gene36540:intron | 35.0% |
| !!! | CGTCCTTTGTTTTCAAAGTA+AGG | - | chr8.2:76874883-76874902 | MS.gene36540:intron | 35.0% |
| AACGGTAGTTAACTACCACT+GGG | - | chr8.2:76875417-76875436 | MS.gene36540:intron | 40.0% | |
| CAACAACTTGCAACTTCTAC+CGG | - | chr8.2:76873627-76873646 | MS.gene36540:intron | 40.0% | |
| CAATTATAAGGTTTGCCCCT+CGG | - | chr8.2:76873019-76873038 | MS.gene36540:intron | 40.0% | |
| CTTTGGATGTGTCTACAAGA+TGG | - | chr8.2:76872922-76872941 | MS.gene36540:intron | 40.0% | |
| GAATGCATTGAACTCATTGG+TGG | - | chr8.2:76872876-76872895 | MS.gene36540:CDS | 40.0% | |
| GATAGGATGTTCCAGAAATC+AGG | + | chr8.2:76873111-76873130 | None:intergenic | 40.0% | |
| GATTCAGTGTGTCTTGATTG+AGG | - | chr8.2:76873165-76873184 | MS.gene36540:intron | 40.0% | |
| GTAGTTAACTACCGTTGAGT+AGG | + | chr8.2:76875413-76875432 | None:intergenic | 40.0% | |
| TAGACTTTACTTCAAGTGGC+CGG | - | chr8.2:76874476-76874495 | MS.gene36540:intron | 40.0% | |
| TCACGTTCTTCTTCTTCTTC+AGG | - | chr8.2:76875564-76875583 | MS.gene36540:CDS | 40.0% | |
| TGAAGATACACAGCCCTAAA+TGG | + | chr8.2:76874612-76874631 | None:intergenic | 40.0% | |
| TGAGATTGAGGAGAGACATT+CGG | + | chr8.2:76875863-76875882 | None:intergenic | 40.0% | |
| TGTTCCAGAAATCAGGTTTG+TGG | + | chr8.2:76873104-76873123 | None:intergenic | 40.0% | |
| TTATTTGGATGAGCCAAGCT+TGG | - | chr8.2:76873668-76873687 | MS.gene36540:intron | 40.0% | |
| ! | CTATAACTGACTCACATCAC+AGG | - | chr8.2:76875987-76876006 | MS.gene36540:CDS | 40.0% |
| !! | AACATCAGCTGGTTTGTCTT+TGG | - | chr8.2:76872905-76872924 | MS.gene36540:intron | 40.0% |
| !! | ACTAGACACTTTTCTAGCAG+AGG | + | chr8.2:76873446-76873465 | None:intergenic | 40.0% |
| !! | ACTTTTCTAGCAGAGGAAGA+TGG | + | chr8.2:76873439-76873458 | None:intergenic | 40.0% |
| !! | AGAAAAGTGTCTAGTTCCCA+TGG | - | chr8.2:76873451-76873470 | MS.gene36540:intron | 40.0% |
| !! | CAACACAGAACGGATTGAAT+TGG | + | chr8.2:76875611-76875630 | None:intergenic | 40.0% |
| AAATACTAAACTGCCCCCAG+TGG | + | chr8.2:76875435-76875454 | None:intergenic | 45.0% | |
| ACGGTAGTTAACTACCACTG+GGG | - | chr8.2:76875418-76875437 | MS.gene36540:intron | 45.0% | |
| CAACGGTAGTTAACTACCAC+TGG | - | chr8.2:76875416-76875435 | MS.gene36540:intron | 45.0% | |
| CGCTATTAGCCCGCTAAAAA+CGG | + | chr8.2:76875350-76875369 | None:intergenic | 45.0% | |
| CTAATGGCTCGTGATGTGTT+GGG | - | chr8.2:76873771-76873790 | MS.gene36540:intron | 45.0% | |
| CTATTAGCCCGCTAAAAACG+GGG | + | chr8.2:76875348-76875367 | None:intergenic | 45.0% | |
| GAGACCACAAACCTGATTTC+TGG | - | chr8.2:76873097-76873116 | MS.gene36540:intron | 45.0% | |
| GCTATTAGCCCGCTAAAAAC+GGG | + | chr8.2:76875349-76875368 | None:intergenic | 45.0% | |
| GGGTGTGAAAGATGAAGACA+AGG | - | chr8.2:76873186-76873205 | MS.gene36540:intron | 45.0% | |
| TAACTACCGTTGAGTAGGGA+TGG | + | chr8.2:76875408-76875427 | None:intergenic | 45.0% | |
| TACTTCAAGTGGCCGGTATA+TGG | - | chr8.2:76874483-76874502 | MS.gene36540:intron | 45.0% | |
| TCGGAAGAAGAGTGGAAAAG+AGG | - | chr8.2:76873038-76873057 | MS.gene36540:CDS | 45.0% | |
| TCTAATGGCTCGTGATGTGT+TGG | - | chr8.2:76873770-76873789 | MS.gene36540:intron | 45.0% | |
| ! | CTTTTCCACTCTTCTTCCGA+GGG | + | chr8.2:76873038-76873057 | None:intergenic | 45.0% |
| ! | TAACTGACTCACATCACAGG+AGG | - | chr8.2:76875990-76876009 | MS.gene36540:CDS | 45.0% |
| ! | TCTTTTCCACTCTTCTTCCG+AGG | + | chr8.2:76873039-76873058 | None:intergenic | 45.0% |
| ! | TGTACTCGCAATTGGCTTCA+TGG | - | chr8.2:76873900-76873919 | MS.gene36540:intron | 45.0% |
| ! | TTTTCCACTCTTCTTCCGAG+GGG | + | chr8.2:76873037-76873056 | None:intergenic | 45.0% |
| !! | ACAAGCTTTGAGTGAGACCA+TGG | + | chr8.2:76873471-76873490 | None:intergenic | 45.0% |
| !! | CAAGCTTTGAGTGAGACCAT+GGG | + | chr8.2:76873470-76873489 | None:intergenic | 45.0% |
| !! | TGTTGTGCTTGCTTTAGGAG+CGG | - | chr8.2:76873270-76873289 | MS.gene36540:intron | 45.0% |
| !!! | CGTTTTTAGCGGGCTAATAG+CGG | - | chr8.2:76875348-76875367 | MS.gene36540:intron | 45.0% |
| !!! | GTTTTTAGCGGGCTAATAGC+GGG | - | chr8.2:76875349-76875368 | MS.gene36540:intron | 45.0% |
| !!! | AATTTTATTATAAAAAGAAA+TGG | + | chr8.2:76874816-76874835 | None:intergenic | 5.0% |
| !!! | ATTTATTATTTTTATAATAG+CGG | - | chr8.2:76875193-76875212 | MS.gene36540:CDS | 5.0% |
| AAGGATGACGCTGTCTACCT+TGG | - | chr8.2:76873303-76873322 | MS.gene36540:intron | 50.0% | |
| AAGGTAGACAGCGTCATCCT+TGG | + | chr8.2:76873304-76873323 | None:intergenic | 50.0% | |
| AGGTAGACAGCGTCATCCTT+GGG | + | chr8.2:76873303-76873322 | None:intergenic | 50.0% | |
| CGGTAGTTAACTACCACTGG+GGG | - | chr8.2:76875419-76875438 | MS.gene36540:intron | 50.0% | |
| GGTGGAAGGAAAATTGGTGC+AGG | - | chr8.2:76873733-76873752 | MS.gene36540:intron | 50.0% | |
| GTACTGCCATCCCTACTCAA+CGG | - | chr8.2:76875399-76875418 | MS.gene36540:intron | 50.0% | |
| GTTGAGTAGGGATGGCAGTA+CGG | + | chr8.2:76875400-76875419 | None:intergenic | 50.0% | |
| TTGAGTAGGGATGGCAGTAC+GGG | + | chr8.2:76875399-76875418 | None:intergenic | 50.0% | |
| ! | AGACATTCGGATGCTGCTTC+TGG | + | chr8.2:76875850-76875869 | None:intergenic | 50.0% |
| ! | GGTGGTGTTGAAACATCAGC+TGG | - | chr8.2:76872894-76872913 | MS.gene36540:CDS | 50.0% |
| !! | TCAGGTGTTGCTGCAACAGT+TGG | + | chr8.2:76875038-76875057 | None:intergenic | 50.0% |
| ACAGCGTCATCCTTGGGTCA+AGG | + | chr8.2:76873297-76873316 | None:intergenic | 55.0% | |
| AGTGGCCGGTATATGGCTGT+TGG | - | chr8.2:76874490-76874509 | MS.gene36540:intron | 55.0% | |
| CTGACTCACATCACAGGAGG+AGG | - | chr8.2:76875993-76876012 | MS.gene36540:CDS | 55.0% | |
| TAGCCCGCTAAAAACGGGGT+GGG | + | chr8.2:76875344-76875363 | None:intergenic | 55.0% | |
| TTAGCCCGCTAAAAACGGGG+TGG | + | chr8.2:76875345-76875364 | None:intergenic | 55.0% | |
| TTTGCCCCTCGGAAGAAGAG+TGG | - | chr8.2:76873030-76873049 | MS.gene36540:CDS | 55.0% | |
| !! | AATAGCGGGCTGGGCCTAAA+CGG | - | chr8.2:76875363-76875382 | MS.gene36540:intron | 55.0% |
| !! | AATCTCAGAAGCGCCGCAGA+TGG | - | chr8.2:76875876-76875895 | MS.gene36540:intron | 55.0% |
| !! | ATCTCAGAAGCGCCGCAGAT+GGG | - | chr8.2:76875877-76875896 | MS.gene36540:intron | 55.0% |
| CAGCCCGCTAATCCGCCTTT+AGG | - | chr8.2:76875268-76875287 | MS.gene36540:CDS | 60.0% | |
| CCCGCTAATCCGCCTTTAGG+CGG | - | chr8.2:76875271-76875290 | MS.gene36540:CDS | 60.0% | |
| CCGCTAAAAACGGGGTGGGA+CGG | + | chr8.2:76875340-76875359 | None:intergenic | 60.0% | |
| CCGCTAATCCGCCTTTAGGC+GGG | - | chr8.2:76875272-76875291 | MS.gene36540:CDS | 60.0% | |
| CGCTAAAAACGGGGTGGGAC+GGG | + | chr8.2:76875339-76875358 | None:intergenic | 60.0% | |
| CGCTAATCCGCCTTTAGGCG+GGG | - | chr8.2:76875273-76875292 | MS.gene36540:CDS | 60.0% | |
| GCTAAAAACGGGGTGGGACG+GGG | + | chr8.2:76875338-76875357 | None:intergenic | 60.0% | |
| TAATCCGCCTTTAGGCGGGG+CGG | - | chr8.2:76875276-76875295 | MS.gene36540:CDS | 60.0% | |
| TAGGAGCGGTCCTTGACCCA+AGG | - | chr8.2:76873284-76873303 | MS.gene36540:intron | 60.0% | |
| TTGAGCCCACCCCCTCAAGT+TGG | - | chr8.2:76875308-76875327 | MS.gene36540:intron | 60.0% | |
| !! | ATAGCGGGCTGGGCCTAAAC+GGG | - | chr8.2:76875364-76875383 | MS.gene36540:intron | 60.0% |
| !! | CCCGCCTAAAGGCGGATTAG+CGG | + | chr8.2:76875275-76875294 | None:intergenic | 60.0% |
| !! | CCGCCTAAAGGCGGATTAGC+GGG | + | chr8.2:76875274-76875293 | None:intergenic | 60.0% |
| !! | CCGTCCCACCCCGTTTTTAG+CGG | - | chr8.2:76875337-76875356 | MS.gene36540:intron | 60.0% |
| !! | CTAAAGGCGGATTAGCGGGC+TGG | + | chr8.2:76875270-76875289 | None:intergenic | 60.0% |
| !! | CTGCGGCGCTTCTGAGATTG+AGG | + | chr8.2:76875875-76875894 | None:intergenic | 60.0% |
| !! | TAGCGGGCTAATAGCGGGCT+GGG | - | chr8.2:76875354-76875373 | MS.gene36540:intron | 60.0% |
| !! | TTAGCGGGCTAATAGCGGGC+TGG | - | chr8.2:76875353-76875372 | MS.gene36540:intron | 60.0% |
| !!! | CGTCCCACCCCGTTTTTAGC+GGG | - | chr8.2:76875338-76875357 | MS.gene36540:intron | 60.0% |
| AAAAACGGGGTGGGACGGGG+CGG | + | chr8.2:76875335-76875354 | None:intergenic | 65.0% | |
| AATCCGCCTTTAGGCGGGGC+GGG | - | chr8.2:76875277-76875296 | MS.gene36540:CDS | 65.0% | |
| !! | TAGCGGGCTGGGCCTAAACG+GGG | - | chr8.2:76875365-76875384 | MS.gene36540:intron | 65.0% |
| AAAACGGGGTGGGACGGGGC+GGG | + | chr8.2:76875334-76875353 | None:intergenic | 70.0% | |
| ACGGGGCGGGCCAACTTGAG+GGG | + | chr8.2:76875321-76875340 | None:intergenic | 70.0% | |
| ATCCGCCTTTAGGCGGGGCG+GGG | - | chr8.2:76875278-76875297 | MS.gene36540:CDS | 70.0% | |
| GACGGGGCGGGCCAACTTGA+GGG | + | chr8.2:76875322-76875341 | None:intergenic | 70.0% | |
| GCGGGCCAACTTGAGGGGGT+GGG | + | chr8.2:76875316-76875335 | None:intergenic | 70.0% | |
| TCACACCCCGCCCCGCCTAA+AGG | + | chr8.2:76875286-76875305 | None:intergenic | 70.0% | |
| !! | AGGCGGATTAGCGGGCTGGC+TGG | + | chr8.2:76875266-76875285 | None:intergenic | 70.0% |
| CACCCCGCCCCGCCTAAAGG+CGG | + | chr8.2:76875283-76875302 | None:intergenic | 75.0% | |
| CGGGGCGGGCCAACTTGAGG+GGG | + | chr8.2:76875320-76875339 | None:intergenic | 75.0% | |
| GGACGGGGCGGGCCAACTTG+AGG | + | chr8.2:76875323-76875342 | None:intergenic | 75.0% | |
| GGCGGGCCAACTTGAGGGGG+TGG | + | chr8.2:76875317-76875336 | None:intergenic | 75.0% | |
| GGGCTGGGCCTAAACGGGGC+GGG | - | chr8.2:76875369-76875388 | MS.gene36540:intron | 75.0% | |
| TGGGCCTAAACGGGGCGGGC+TGG | - | chr8.2:76875373-76875392 | MS.gene36540:intron | 75.0% | |
| ! | CGGGCTGGGCCTAAACGGGG+CGG | - | chr8.2:76875368-76875387 | MS.gene36540:intron | 75.0% |
| ! | CGGGCCAGCCCGCCCCGTTT+AGG | + | chr8.2:76875380-76875399 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 76872861 | 76876062 | 76872861 | ID=MS.gene36540 |
| chr8.2 | mRNA | 76872861 | 76876062 | 76872861 | ID=MS.gene36540.t1;Parent=MS.gene36540 |
| chr8.2 | exon | 76875895 | 76876062 | 76875895 | ID=MS.gene36540.t1.exon1;Parent=MS.gene36540.t1 |
| chr8.2 | CDS | 76875895 | 76876062 | 76875895 | ID=cds.MS.gene36540.t1;Parent=MS.gene36540.t1 |
| chr8.2 | exon | 76875428 | 76875757 | 76875428 | ID=MS.gene36540.t1.exon2;Parent=MS.gene36540.t1 |
| chr8.2 | CDS | 76875428 | 76875757 | 76875428 | ID=cds.MS.gene36540.t1;Parent=MS.gene36540.t1 |
| chr8.2 | exon | 76874987 | 76875314 | 76874987 | ID=MS.gene36540.t1.exon3;Parent=MS.gene36540.t1 |
| chr8.2 | CDS | 76874987 | 76875314 | 76874987 | ID=cds.MS.gene36540.t1;Parent=MS.gene36540.t1 |
| chr8.2 | exon | 76874024 | 76874085 | 76874024 | ID=MS.gene36540.t1.exon4;Parent=MS.gene36540.t1 |
| chr8.2 | CDS | 76874024 | 76874085 | 76874024 | ID=cds.MS.gene36540.t1;Parent=MS.gene36540.t1 |
| chr8.2 | exon | 76873025 | 76873084 | 76873025 | ID=MS.gene36540.t1.exon5;Parent=MS.gene36540.t1 |
| chr8.2 | CDS | 76873025 | 76873084 | 76873025 | ID=cds.MS.gene36540.t1;Parent=MS.gene36540.t1 |
| chr8.2 | exon | 76872861 | 76872914 | 76872861 | ID=MS.gene36540.t1.exon6;Parent=MS.gene36540.t1 |
| chr8.2 | CDS | 76872861 | 76872914 | 76872861 | ID=cds.MS.gene36540.t1;Parent=MS.gene36540.t1 |
| Gene Sequence |
| Protein sequence |
