AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053006


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053006.t1 MTR_6g006190 99.429 175 1 0 1 175 1 175 1.60e-131 365
MS.gene053006.t1 MTR_6g006190 100.000 115 0 0 61 175 37 151 1.50e-84 246
MS.gene053006.t1 MTR_1g083950 27.485 171 110 5 3 171 6 164 4.94e-17 74.3
MS.gene053006.t1 MTR_1g087200 26.590 173 101 4 1 163 1 157 8.81e-17 73.6
MS.gene053006.t1 MTR_1g054750 31.959 97 66 0 66 162 85 181 2.43e-16 73.2
MS.gene053006.t1 MTR_1g054765 32.990 97 62 1 66 162 75 168 3.15e-15 70.1
MS.gene053006.t1 MTR_5g065980 26.846 149 96 3 27 162 20 168 7.75e-15 68.9
MS.gene053006.t1 MTR_1g116290 64.706 51 10 1 18 60 19 69 1.49e-14 65.5
MS.gene053006.t1 MTR_5g077130 29.932 147 92 3 24 162 14 157 8.95e-14 65.9
MS.gene053006.t1 MTR_5g065980 27.152 151 95 4 27 162 20 170 1.36e-13 65.9
MS.gene053006.t1 MTR_1g088640 24.684 158 108 3 8 163 14 162 2.76e-13 64.7
MS.gene053006.t1 MTR_5g077130 29.730 148 92 4 24 162 14 158 5.46e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053006.t1 AT3G01520 73.714 175 46 0 1 175 1 175 1.52e-96 277
MS.gene053006.t1 AT5G14680 70.857 175 51 0 1 175 1 175 1.57e-95 274
MS.gene053006.t1 AT3G11930 28.402 169 99 4 7 162 34 193 7.07e-21 85.5
MS.gene053006.t1 AT3G11930 27.647 170 100 4 7 162 34 194 1.35e-19 82.0
MS.gene053006.t1 AT3G11930 27.976 168 100 4 7 162 34 192 1.55e-19 82.0
MS.gene053006.t1 AT3G58450 31.548 168 91 5 8 162 32 188 4.21e-19 80.9
MS.gene053006.t1 AT3G58450 34.337 166 82 6 8 162 32 181 2.02e-18 79.0
MS.gene053006.t1 AT1G68300 28.485 165 97 4 7 165 11 160 2.23e-18 77.8
MS.gene053006.t1 AT3G11930 25.641 195 97 5 7 162 34 219 2.92e-15 71.2
MS.gene053006.t1 AT1G09740 36.957 92 58 0 77 168 79 170 4.10e-15 69.7
MS.gene053006.t1 AT1G09740 36.957 92 58 0 77 168 79 170 4.10e-15 69.7
MS.gene053006.t1 AT3G62550 27.907 172 95 7 7 167 8 161 1.62e-14 67.8

Find 40 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTGTTACGAATGATTT+TGG 0.101569 6.2:+1644272 None:intergenic
GTCAATAGGTGTAATGAAAT+TGG 0.188780 6.2:-1641478 MS.gene053006:CDS
CTCATTCAATATCACTTCTT+TGG 0.192686 6.2:+1641048 None:intergenic
TCATTCAATATCACTTCTTT+GGG 0.324923 6.2:+1641049 None:intergenic
TCAATAGGTGTAATGAAATT+GGG 0.344327 6.2:-1641477 MS.gene053006:CDS
TCGAAATACTAGTCATCAAC+AGG 0.355011 6.2:+1640134 None:intergenic
GTTGTTGGAAGCAGAGGTCT+TGG 0.398274 6.2:-1640998 MS.gene053006:CDS
CTTCCAACAACTAGTAAATC+TGG 0.412953 6.2:+1641010 None:intergenic
TGCTGGAATACTTCGTCAAT+AGG 0.425861 6.2:-1641492 MS.gene053006:CDS
GCACCTTTGCTACTGATTGA+AGG 0.436887 6.2:+1644312 None:intergenic
GATATTGAATGAGGTGAAAC+GGG 0.455961 6.2:-1641038 MS.gene053006:CDS
TGATATTGAATGAGGTGAAA+CGG 0.457358 6.2:-1641039 MS.gene053006:CDS
CGTCCAGATTTACTAGTTGT+TGG 0.459311 6.2:-1641013 MS.gene053006:CDS
GGCTAGAGGGACTCATCTGC+TGG 0.479989 6.2:-1641509 MS.gene053006:CDS
AGGAACTGACCGTCTTCATC+AGG 0.480141 6.2:+1644213 None:intergenic
GAACATGAAACAGCAGGAAA+AGG 0.486725 6.2:-1641530 MS.gene053006:CDS
GTAGCAAAGGTGCTTTCGAT+TGG 0.487042 6.2:-1644302 MS.gene053006:CDS
GAATCAACACGAGTTATGAT+TGG 0.488228 6.2:-1644369 MS.gene053006:CDS
GTGGATAGTATCTATGCATC+AGG 0.492226 6.2:-1641565 MS.gene053006:CDS
CTGCTTTATCCATGCTTCAC+AGG 0.507992 6.2:+1641078 None:intergenic
TAGTCATCAACAGGGTCCCT+TGG 0.510016 6.2:+1640143 None:intergenic
TTACTAGTTGTTGGAAGCAG+AGG 0.512564 6.2:-1641004 MS.gene053006:CDS
TTGCTACTGATTGAAGGATG+TGG 0.522286 6.2:+1644318 None:intergenic
TTGCGTTTGATAGTCATGAC+AGG 0.533981 6.2:+1640179 None:intergenic
CAAAGAAGTGATATTGAATG+AGG 0.559803 6.2:-1641047 MS.gene053006:CDS
CTTTAAGAACATGAAACAGC+AGG 0.564406 6.2:-1641536 MS.gene053006:CDS
GTGAACGAGTCAAGCTTGAA+AGG 0.573861 6.2:-1644345 MS.gene053006:CDS
CTGTGAAGCATGGATAAAGC+AGG 0.575624 6.2:-1641077 MS.gene053006:CDS
CAATAGGTGTAATGAAATTG+GGG 0.584691 6.2:-1641476 MS.gene053006:intron
CATCCTTCAATCAGTAGCAA+AGG 0.586643 6.2:-1644315 MS.gene053006:CDS
AACAGCAGGAAAAGGCTAGA+GGG 0.609669 6.2:-1641522 MS.gene053006:CDS
TGCGTTTGATAGTCATGACA+GGG 0.634272 6.2:+1640180 None:intergenic
AAACAGCAGGAAAAGGCTAG+AGG 0.635603 6.2:-1641523 MS.gene053006:CDS
GTTCAAGTTCCTGATGAAGA+CGG 0.636387 6.2:-1644222 MS.gene053006:intron
GCAATGCAGATGAAACTCCA+AGG 0.637395 6.2:-1640160 MS.gene053006:CDS
TGTAGGTGACCTGTGAAGCA+TGG 0.639851 6.2:-1641087 MS.gene053006:intron
CAATGCAGATGAAACTCCAA+GGG 0.667475 6.2:-1640159 MS.gene053006:CDS
TGTGAAGCATGGATAAAGCA+GGG 0.669399 6.2:-1641076 MS.gene053006:CDS
TCTTGTAGGTTACGATGACG+TGG 0.674991 6.2:-1641584 MS.gene053006:intron
CGAAATACTAGTCATCAACA+GGG 0.682603 6.2:+1640135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTATTTTTAAAAT+CGG + chr6.2:1643595-1643614 None:intergenic 0.0%
!! ATTCATATTTAAAAATATCA+TGG + chr6.2:1643722-1643741 None:intergenic 10.0%
!!! ATTATTTTCTTATTTTTGAT+AGG + chr6.2:1642585-1642604 None:intergenic 10.0%
!! AAAGATCAAATAAATTCAAA+TGG + chr6.2:1641528-1641547 None:intergenic 15.0%
!! ATTATACAAAGCAAAATAAA+GGG - chr6.2:1642879-1642898 MS.gene053006:intron 15.0%
!! CTAAATATTTATACATTTGT+AGG - chr6.2:1643416-1643435 MS.gene053006:intron 15.0%
!! TATTATACAAAGCAAAATAA+AGG - chr6.2:1642878-1642897 MS.gene053006:intron 15.0%
!! TGGAAAATATGAAAAAAATA+TGG + chr6.2:1642795-1642814 None:intergenic 15.0%
!!! CAGTTATGTTAATTAATTTT+AGG - chr6.2:1643864-1643883 MS.gene053006:intron 15.0%
!!! GTAAAAATTCTTTTTAATGA+TGG - chr6.2:1641042-1641061 MS.gene053006:CDS 15.0%
!!! TAAATATGGAATGAATTTTT+TGG - chr6.2:1643768-1643787 MS.gene053006:intron 15.0%
!!! TATTTTGATTTGTTATGTTA+GGG - chr6.2:1641190-1641209 MS.gene053006:intron 15.0%
!!! TGTTATAATGTTCTTTTTAA+CGG - chr6.2:1642076-1642095 MS.gene053006:intron 15.0%
!! ATAATGAATAAAGATTACAC+AGG + chr6.2:1642445-1642464 None:intergenic 20.0%
!! ATGGTATGAATTCTTAAATA+TGG - chr6.2:1643754-1643773 MS.gene053006:intron 20.0%
!! CACAAATTGAATTGAATAAA+AGG + chr6.2:1641983-1642002 None:intergenic 20.0%
!! TAGATTAAGTTCAAAGTAAA+GGG + chr6.2:1642837-1642856 None:intergenic 20.0%
!! TTAGATTAAGTTCAAAGTAA+AGG + chr6.2:1642838-1642857 None:intergenic 20.0%
!! TTATTCAATTCAATTTGTGA+GGG - chr6.2:1641984-1642003 MS.gene053006:intron 20.0%
!! TTTATTCAATTCAATTTGTG+AGG - chr6.2:1641983-1642002 MS.gene053006:intron 20.0%
!!! AAAATTCTTTTTAATGATGG+TGG - chr6.2:1641045-1641064 MS.gene053006:CDS 20.0%
!!! AATTGTCAAACTTCTTATTT+TGG - chr6.2:1643810-1643829 MS.gene053006:intron 20.0%
!!! ACTTCTTATTTTGGAAATTA+TGG - chr6.2:1643819-1643838 MS.gene053006:intron 20.0%
!!! ATAGGCAATCTTTTATTAAA+TGG + chr6.2:1642567-1642586 None:intergenic 20.0%
!!! ATGTATAAATATTTAGCTTG+TGG + chr6.2:1643412-1643431 None:intergenic 20.0%
!!! GTATTTTGATTTGTTATGTT+AGG - chr6.2:1641189-1641208 MS.gene053006:intron 20.0%
!!! GTTATAATGTTCTTTTTAAC+GGG - chr6.2:1642077-1642096 MS.gene053006:intron 20.0%
!!! TAGGCAATCTTTTATTAAAT+GGG + chr6.2:1642566-1642585 None:intergenic 20.0%
!!! TATTCTGAAATATGTTACTA+AGG - chr6.2:1643649-1643668 MS.gene053006:intron 20.0%
!!! TTCAATTGTGTTATTTTATC+AGG - chr6.2:1640567-1640586 MS.gene053006:intron 20.0%
! AAACAACTTAAATTCCTTGA+TGG + chr6.2:1643351-1643370 None:intergenic 25.0%
! AATATAAATAAATGCCTCAC+TGG + chr6.2:1642862-1642881 None:intergenic 25.0%
! AATCACATGTGTCATAAATA+TGG + chr6.2:1640544-1640563 None:intergenic 25.0%
! ATCACAACTCAAATCAAATA+TGG + chr6.2:1641361-1641380 None:intergenic 25.0%
! GAATAATTAGAGAAGAAAAG+AGG - chr6.2:1643886-1643905 MS.gene053006:intron 25.0%
! TAAAATCGGACAATTCATAA+TGG + chr6.2:1643581-1643600 None:intergenic 25.0%
! TATGAAAAGATGTTACACAT+TGG - chr6.2:1641745-1641764 MS.gene053006:intron 25.0%
! TATGAATGTCTATTGAAGTA+TGG - chr6.2:1643735-1643754 MS.gene053006:intron 25.0%
! TCAATAGGTGTAATGAAATT+GGG - chr6.2:1643043-1643062 MS.gene053006:intron 25.0%
! TCATTCAATATCACTTCTTT+GGG + chr6.2:1643474-1643493 None:intergenic 25.0%
! TCTTGAAGTTTCATATATAC+TGG - chr6.2:1644184-1644203 MS.gene053006:intron 25.0%
! TTCAACGAGTAACTTAATTA+CGG - chr6.2:1644236-1644255 MS.gene053006:CDS 25.0%
! TTGTGATCTTAGTAACTATT+TGG - chr6.2:1641374-1641393 MS.gene053006:intron 25.0%
! TTTAGAGAAATTGAAACATC+TGG - chr6.2:1641852-1641871 MS.gene053006:intron 25.0%
! TTTCTACCATCAATAATAGT+CGG - chr6.2:1644100-1644119 MS.gene053006:intron 25.0%
!! AACATTGTTACGAATGATTT+TGG + chr6.2:1640251-1640270 None:intergenic 25.0%
!! AATAAGCTGAAAACATCTTT+TGG + chr6.2:1641452-1641471 None:intergenic 25.0%
!! AATGTGTAACATCTTTTCAT+AGG + chr6.2:1641746-1641765 None:intergenic 25.0%
!! TTATGTCTATAAGTCCTTTT+CGG - chr6.2:1641693-1641712 MS.gene053006:intron 25.0%
!! TTGTGATTTTGGATATTGTT+TGG - chr6.2:1643087-1643106 MS.gene053006:intron 25.0%
!!! AGCTTGATTTGTAATTGATT+GGG - chr6.2:1641915-1641934 MS.gene053006:intron 25.0%
!!! CTTATTTCTATGATCTCTTT+AGG - chr6.2:1641466-1641485 MS.gene053006:intron 25.0%
ACTTAATTACGGTCAATAAC+CGG - chr6.2:1644247-1644266 MS.gene053006:CDS 30.0%
AGAGAAAATGACGTAATTGA+AGG + chr6.2:1640651-1640670 None:intergenic 30.0%
AGCACATCATTTATCACAAT+TGG + chr6.2:1643690-1643709 None:intergenic 30.0%
ATACTTCGGATACAAACAAA+TGG + chr6.2:1642212-1642231 None:intergenic 30.0%
ATTAGGCTATAAAAAACGAG+AGG + chr6.2:1642703-1642722 None:intergenic 30.0%
CAAAGAAGTGATATTGAATG+AGG - chr6.2:1643473-1643492 MS.gene053006:intron 30.0%
CAATAGGTGTAATGAAATTG+GGG - chr6.2:1643044-1643063 MS.gene053006:intron 30.0%
CTCATTCAATATCACTTCTT+TGG + chr6.2:1643475-1643494 None:intergenic 30.0%
CTCTGTTATATCTTTCTCTT+GGG - chr6.2:1642739-1642758 MS.gene053006:intron 30.0%
CTTATTGCAATAAGTTCACT+GGG - chr6.2:1641716-1641735 MS.gene053006:intron 30.0%
GAACATTGATAAGATTGTAG+TGG - chr6.2:1641167-1641186 MS.gene053006:intron 30.0%
GAGCTTATGGAAATAGTTTA+TGG - chr6.2:1641248-1641267 MS.gene053006:intron 30.0%
GTCAATAGGTGTAATGAAAT+TGG - chr6.2:1643042-1643061 MS.gene053006:intron 30.0%
TACTACTGATATCAATGTGT+CGG - chr6.2:1640854-1640873 MS.gene053006:intron 30.0%
TAGTAACCGACTATTATTGA+TGG + chr6.2:1644109-1644128 None:intergenic 30.0%
TCAAATTACTACTGATGTGT+CGG - chr6.2:1640496-1640515 MS.gene053006:intron 30.0%
TCAAGAAAAACATGCAGTAA+AGG - chr6.2:1643282-1643301 MS.gene053006:intron 30.0%
TCTCTGTTATATCTTTCTCT+TGG - chr6.2:1642738-1642757 MS.gene053006:intron 30.0%
TGAGAAAATGACATAACTGA+AGG + chr6.2:1640479-1640498 None:intergenic 30.0%
TGATATTGAATGAGGTGAAA+CGG - chr6.2:1643481-1643500 MS.gene053006:intron 30.0%
TGATCAAATTCATCATCTCA+GGG + chr6.2:1642680-1642699 None:intergenic 30.0%
TGTAAATTTCTGTCAGAAAC+TGG + chr6.2:1644153-1644172 None:intergenic 30.0%
TTATATCTTTCTCTTGGGTT+CGG - chr6.2:1642744-1642763 MS.gene053006:intron 30.0%
TTGAATGTAATCACATGTGT+CGG + chr6.2:1640552-1640571 None:intergenic 30.0%
TTGAGCAAGATGCAAATAAA+TGG + chr6.2:1641878-1641897 None:intergenic 30.0%
TTGTTATGTTAGGGAATGTT+TGG - chr6.2:1641199-1641218 MS.gene053006:intron 30.0%
TTTGAACACCAAATACCATA+AGG + chr6.2:1642638-1642657 None:intergenic 30.0%
! GTTTGTTAATGAGTGGTTAT+GGG - chr6.2:1643922-1643941 MS.gene053006:intron 30.0%
! TAATGTTCTTTTTAACGGGA+AGG - chr6.2:1642081-1642100 MS.gene053006:intron 30.0%
! TTCTACTCTACTTGTGATTT+TGG - chr6.2:1643076-1643095 MS.gene053006:intron 30.0%
!! AAAAAGTATCGCATTTAGTG+TGG - chr6.2:1642023-1642042 MS.gene053006:intron 30.0%
!! AGTTTGTTAATGAGTGGTTA+TGG - chr6.2:1643921-1643940 MS.gene053006:intron 30.0%
!! ATTTGACTTGTAAGGTTGTT+TGG - chr6.2:1641397-1641416 MS.gene053006:intron 30.0%
!! CTATTTGGATTTGACTTGTA+AGG - chr6.2:1641389-1641408 MS.gene053006:intron 30.0%
!! GAGCTTGATTTGTAATTGAT+TGG - chr6.2:1641914-1641933 MS.gene053006:intron 30.0%
!! GTTACGAATGATTTTGGAAA+CGG + chr6.2:1640245-1640264 None:intergenic 30.0%
!! GTTACTTAGAAAGTGTTTGT+AGG - chr6.2:1641639-1641658 MS.gene053006:intron 30.0%
!! TATTGTTTGTTTGCTGTTGT+TGG - chr6.2:1642509-1642528 MS.gene053006:intron 30.0%
!!! CGTTTTTTATAGCCTAATGA+GGG - chr6.2:1642705-1642724 MS.gene053006:intron 30.0%
!!! GCTATTTTGATAAGCTATCA+TGG + chr6.2:1641314-1641333 None:intergenic 30.0%
!!! TCGTTTTTTATAGCCTAATG+AGG - chr6.2:1642704-1642723 MS.gene053006:intron 30.0%
AACTTATCCATAAGCACTAG+TGG - chr6.2:1643114-1643133 MS.gene053006:intron 35.0%
AATACCATAAGGATGCATTC+TGG + chr6.2:1642627-1642646 None:intergenic 35.0%
ACATAAACCAAGACCAAGAT+AGG + chr6.2:1642144-1642163 None:intergenic 35.0%
ACATGCATATCTATATCACG+AGG - chr6.2:1641567-1641586 MS.gene053006:CDS 35.0%
ACTTGTGTTTCGTTTCTTGT+AGG - chr6.2:1642922-1642941 MS.gene053006:intron 35.0%
AGAGACCAAACTCTAATTCT+TGG - chr6.2:1643949-1643968 MS.gene053006:intron 35.0%
AGTTCAAAGTAAAGGGACAA+TGG + chr6.2:1642830-1642849 None:intergenic 35.0%
ATCCTATCAAACACCTATCT+TGG - chr6.2:1642128-1642147 MS.gene053006:intron 35.0%
ATCTCAGGGAATGTTGATAT+TGG + chr6.2:1642666-1642685 None:intergenic 35.0%
ATGGCAAGAATGCATAAAAC+AGG + chr6.2:1642776-1642795 None:intergenic 35.0%
CATGCATATCTATATCACGA+GGG - chr6.2:1641568-1641587 MS.gene053006:CDS 35.0%
CTAGTTTCACAGGTTATGTA+AGG + chr6.2:1643193-1643212 None:intergenic 35.0%
CTTATTGCAATAAGCCGAAA+AGG + chr6.2:1641710-1641729 None:intergenic 35.0%
CTTCCAACAACTAGTAAATC+TGG + chr6.2:1643513-1643532 None:intergenic 35.0%
GAAAGATACTTTCCCTCATT+AGG + chr6.2:1642720-1642739 None:intergenic 35.0%
GAACTTAATCTAATCCAGTG+AGG - chr6.2:1642845-1642864 MS.gene053006:intron 35.0%
GAAGGTTGTGAATTGTTTAG+AGG - chr6.2:1642099-1642118 MS.gene053006:intron 35.0%
GAATCAACACGAGTTATGAT+TGG - chr6.2:1640151-1640170 MS.gene053006:CDS 35.0%
GAATGCATCCTTATGGTATT+TGG - chr6.2:1642627-1642646 MS.gene053006:intron 35.0%
GAGACCAAACTCTAATTCTT+GGG - chr6.2:1643950-1643969 MS.gene053006:intron 35.0%
GATATTGAATGAGGTGAAAC+GGG - chr6.2:1643482-1643501 MS.gene053006:intron 35.0%
GATTTGTAATTGATTGGGAG+TGG - chr6.2:1641920-1641939 MS.gene053006:intron 35.0%
GCATTTAGTGTGGTTAACAA+CGG - chr6.2:1642033-1642052 MS.gene053006:intron 35.0%
GCTGTTCAATCTTCATCTAA+CGG + chr6.2:1643316-1643335 None:intergenic 35.0%
GCTTATTGCAATAAGTTCAC+TGG - chr6.2:1641715-1641734 MS.gene053006:intron 35.0%
GTGATCAAATTCATCATCTC+AGG + chr6.2:1642681-1642700 None:intergenic 35.0%
GTTCACAAAAATGTTGTGTG+TGG - chr6.2:1641826-1641845 MS.gene053006:intron 35.0%
TAAAGGGAACTGCAATCTAA+TGG - chr6.2:1642895-1642914 MS.gene053006:intron 35.0%
TAGAGAAGAAAAGAGGAAAG+TGG - chr6.2:1643893-1643912 MS.gene053006:intron 35.0%
TCAATTTGTGAGGGTAAGAA+AGG - chr6.2:1641993-1642012 MS.gene053006:intron 35.0%
TTGTTTGATCTGCATCTGAT+TGG - chr6.2:1643365-1643384 MS.gene053006:intron 35.0%
TTTACCAGAATGCATCCTTA+TGG - chr6.2:1642620-1642639 MS.gene053006:intron 35.0%
! AAATGGATTCAACCACCAAT+AGG + chr6.2:1642195-1642214 None:intergenic 35.0%
! AGACTTTTTGTGAGAGCTTA+TGG - chr6.2:1641235-1641254 MS.gene053006:intron 35.0%
! AGAGATCATGCACATACTTT+TGG + chr6.2:1643554-1643573 None:intergenic 35.0%
! ATGGATTAAGAGAGAAAGAG+AGG + chr6.2:1640330-1640349 None:intergenic 35.0%
! CTTTAAGAACATGAAACAGC+AGG - chr6.2:1642984-1643003 MS.gene053006:intron 35.0%
! GAATGTGTCTGATGATGTAA+TGG - chr6.2:1641001-1641020 MS.gene053006:CDS 35.0%
! GATAGAAAAGCTAGTTTCAC+AGG + chr6.2:1643203-1643222 None:intergenic 35.0%
! TCTTTTACCACTAGTGCTTA+TGG + chr6.2:1643124-1643143 None:intergenic 35.0%
!! ATATTTAGCTTGTGGTCAAG+TGG + chr6.2:1643404-1643423 None:intergenic 35.0%
!! GTGGATAGTTTGTTAATGAG+TGG - chr6.2:1643915-1643934 MS.gene053006:intron 35.0%
!! TATGTGTGTGACTTTAGAAC+TGG - chr6.2:1640964-1640983 MS.gene053006:intron 35.0%
!! TCATGCACATACTTTTGGAA+AGG + chr6.2:1643549-1643568 None:intergenic 35.0%
!! TCTGATCAAAGAAGTGTCTA+GGG - chr6.2:1640731-1640750 MS.gene053006:intron 35.0%
!! TTCTGATCAAAGAAGTGTCT+AGG - chr6.2:1640730-1640749 MS.gene053006:intron 35.0%
AAGCTATCATGGAGAGCTTA+TGG + chr6.2:1641303-1641322 None:intergenic 40.0%
AAGGCGACGTTCAAATACTT+CGG + chr6.2:1642226-1642245 None:intergenic 40.0%
ACCAAGACTCTCGAATTTCT+TGG - chr6.2:1643977-1643996 MS.gene053006:intron 40.0%
ACGTGCTCCATTTCTTTGTT+GGG - chr6.2:1642362-1642381 MS.gene053006:intron 40.0%
ACTTTCGATGATCCTATTGG+TGG - chr6.2:1642180-1642199 MS.gene053006:intron 40.0%
AGAAGAAAAGAGGAAAGTGG+TGG - chr6.2:1643896-1643915 MS.gene053006:intron 40.0%
AGTTCCACCCAACAAAGAAA+TGG + chr6.2:1642372-1642391 None:intergenic 40.0%
CAATGCAGATGAAACTCCAA+GGG - chr6.2:1644361-1644380 MS.gene053006:CDS 40.0%
CAGAACATGACAACTCAAAC+CGG + chr6.2:1644269-1644288 None:intergenic 40.0%
CAGTGTCAGACATTTCTGAT+CGG - chr6.2:1640430-1640449 MS.gene053006:intron 40.0%
CATCCTTCAATCAGTAGCAA+AGG - chr6.2:1640205-1640224 MS.gene053006:CDS 40.0%
CCAAGACTCTCGAATTTCTT+GGG - chr6.2:1643978-1643997 MS.gene053006:intron 40.0%
CGAACTTTCGATGATCCTAT+TGG - chr6.2:1642177-1642196 MS.gene053006:intron 40.0%
CGTCCAGATTTACTAGTTGT+TGG - chr6.2:1643507-1643526 MS.gene053006:intron 40.0%
CTCTCCCAAGAATTAGAGTT+TGG + chr6.2:1643957-1643976 None:intergenic 40.0%
GAACATGAAACAGCAGGAAA+AGG - chr6.2:1642990-1643009 MS.gene053006:intron 40.0%
GACAATGGATCACAAGTGAA+TGG + chr6.2:1642815-1642834 None:intergenic 40.0%
GACCAAGATAGGTGTTTGAT+AGG + chr6.2:1642133-1642152 None:intergenic 40.0%
GCGTCTTCAATCAGAAATGT+CGG + chr6.2:1640395-1640414 None:intergenic 40.0%
GCTCATAATTTCGACCATCA+AGG - chr6.2:1643334-1643353 MS.gene053006:intron 40.0%
GGTTGTGAATTGTTTAGAGG+TGG - chr6.2:1642102-1642121 MS.gene053006:intron 40.0%
GTGGATAGTATCTATGCATC+AGG - chr6.2:1642955-1642974 MS.gene053006:intron 40.0%
GTTAATGAGTGGTTATGGGA+AGG - chr6.2:1643926-1643945 MS.gene053006:intron 40.0%
TACGTGCTCCATTTCTTTGT+TGG - chr6.2:1642361-1642380 MS.gene053006:intron 40.0%
TACTCGTATCAGTTTGTGTG+CGG - chr6.2:1642277-1642296 MS.gene053006:intron 40.0%
TATCTGTCAATCCTCTGTTG+TGG - chr6.2:1642466-1642485 MS.gene053006:intron 40.0%
TCAAACACCTATCTTGGTCT+TGG - chr6.2:1642134-1642153 MS.gene053006:intron 40.0%
TCTTCACAATTCCACAACAG+AGG + chr6.2:1642480-1642499 None:intergenic 40.0%
TGCTGGAATACTTCGTCAAT+AGG - chr6.2:1643028-1643047 MS.gene053006:intron 40.0%
TGTGAAGCATGGATAAAGCA+GGG - chr6.2:1643444-1643463 MS.gene053006:intron 40.0%
TTACTAGTTGTTGGAAGCAG+AGG - chr6.2:1643516-1643535 MS.gene053006:intron 40.0%
TTGTAATTGATTGGGAGTGG+AGG - chr6.2:1641923-1641942 MS.gene053006:intron 40.0%
! ATGTTCTGCAGGGTTTTTGT+TGG - chr6.2:1644281-1644300 MS.gene053006:CDS 40.0%
! GCACGGTTAGTGAATTTTGT+TGG - chr6.2:1644303-1644322 MS.gene053006:CDS 40.0%
! GTTCAAGTTCCTGATGAAGA+CGG - chr6.2:1640298-1640317 MS.gene053006:intron 40.0%
! TGCGTTTGATAGTCATGACA+GGG + chr6.2:1644343-1644362 None:intergenic 40.0%
! TTGAGTTGTCATGTTCTGCA+GGG - chr6.2:1644271-1644290 MS.gene053006:CDS 40.0%
! TTGCGTTTGATAGTCATGAC+AGG + chr6.2:1644344-1644363 None:intergenic 40.0%
! TTGCTACTGATTGAAGGATG+TGG + chr6.2:1640205-1640224 None:intergenic 40.0%
!! CTTGGTCTTGGTTTATGTGT+AGG - chr6.2:1642146-1642165 MS.gene053006:intron 40.0%
!! GAGATCAATTCTAGCCTTGT+CGG - chr6.2:1642396-1642415 MS.gene053006:intron 40.0%
!! TAACAACGGCTTGGTGTATT+TGG - chr6.2:1642047-1642066 MS.gene053006:intron 40.0%
!! TGTGACTTTAGAACTGGTTG+TGG - chr6.2:1640970-1640989 MS.gene053006:intron 40.0%
!! TTTGAGTTGTCATGTTCTGC+AGG - chr6.2:1644270-1644289 MS.gene053006:CDS 40.0%
AAACAGCAGGAAAAGGCTAG+AGG - chr6.2:1642997-1643016 MS.gene053006:intron 45.0%
AACAGCAGGAAAAGGCTAGA+GGG - chr6.2:1642998-1643017 MS.gene053006:intron 45.0%
ACTCGTATCAGTTTGTGTGC+GGG - chr6.2:1642278-1642297 MS.gene053006:intron 45.0%
CCCAAGAAATTCGAGAGTCT+TGG + chr6.2:1643981-1644000 None:intergenic 45.0%
CTGCTTTATCCATGCTTCAC+AGG + chr6.2:1643445-1643464 None:intergenic 45.0%
CTGTGAAGCATGGATAAAGC+AGG - chr6.2:1643443-1643462 MS.gene053006:intron 45.0%
GACTCTCGAATTTCTTGGGT+AGG - chr6.2:1643982-1644001 MS.gene053006:intron 45.0%
GCAATGCAGATGAAACTCCA+AGG - chr6.2:1644360-1644379 MS.gene053006:CDS 45.0%
GCTCAAAGACGTCGAAAGTA+TGG - chr6.2:1641892-1641911 MS.gene053006:intron 45.0%
GTGAACGAGTCAAGCTTGAA+AGG - chr6.2:1640175-1640194 MS.gene053006:CDS 45.0%
TAGTGTGGTTAACAACGGCT+TGG - chr6.2:1642038-1642057 MS.gene053006:intron 45.0%
TCTTGTAGGTTACGATGACG+TGG - chr6.2:1642936-1642955 MS.gene053006:intron 45.0%
TCTTTGTTGGGTGGAACTGT+AGG - chr6.2:1642374-1642393 MS.gene053006:intron 45.0%
TGCTCCATTTCTTTGTTGGG+TGG - chr6.2:1642365-1642384 MS.gene053006:intron 45.0%
! GCACCTTTGCTACTGATTGA+AGG + chr6.2:1640211-1640230 None:intergenic 45.0%
!! AACGGCTTGGTGTATTTGGT+TGG - chr6.2:1642051-1642070 MS.gene053006:intron 45.0%
!! GTAGCAAAGGTGCTTTCGAT+TGG - chr6.2:1640218-1640237 MS.gene053006:CDS 45.0%
!! AATATCAAAATTAAAAAAAA+TGG + chr6.2:1640349-1640368 None:intergenic 5.0%
AGCTGAACTGAAGGGTTGTG+GGG - chr6.2:1642317-1642336 MS.gene053006:intron 50.0%
AGGAACTGACCGTCTTCATC+AGG + chr6.2:1640310-1640329 None:intergenic 50.0%
CGACTACCAACAGTGCAAGA+AGG + chr6.2:1642245-1642264 None:intergenic 50.0%
GAGCTGAACTGAAGGGTTGT+GGG - chr6.2:1642316-1642335 MS.gene053006:intron 50.0%
GTTGTTGGAAGCAGAGGTCT+TGG - chr6.2:1643522-1643541 MS.gene053006:intron 50.0%
TAGTCATCAACAGGGTCCCT+TGG + chr6.2:1644380-1644399 None:intergenic 50.0%
TATCAGTTTGTGTGCGGGTC+TGG - chr6.2:1642283-1642302 MS.gene053006:intron 50.0%
TGTAGGTGACCTGTGAAGCA+TGG - chr6.2:1643433-1643452 MS.gene053006:intron 50.0%
TTGCAGGGAGCTGAACTGAA+GGG - chr6.2:1642309-1642328 MS.gene053006:intron 50.0%
TTTGCAGGGAGCTGAACTGA+AGG - chr6.2:1642308-1642327 MS.gene053006:intron 50.0%
! CGGTGTTAGTGTGTCTGTGT+CGG - chr6.2:1640874-1640893 MS.gene053006:intron 50.0%
! CTGCAGGGTTTTTGTTGGCA+CGG - chr6.2:1644286-1644305 MS.gene053006:CDS 50.0%
!! AATTCTAGCCTTGTCGGCGA+TGG - chr6.2:1642402-1642421 MS.gene053006:intron 50.0%
ACGTCGCCTTCTTGCACTGT+TGG - chr6.2:1642236-1642255 MS.gene053006:intron 55.0%
GGAGCTGAACTGAAGGGTTG+TGG - chr6.2:1642315-1642334 MS.gene053006:intron 55.0%
! GCGATGGTCGTGCTGACAAT+TGG - chr6.2:1642418-1642437 MS.gene053006:intron 55.0%
!! CTTGCACTGTTGGTAGTCGC+TGG - chr6.2:1642246-1642265 MS.gene053006:intron 55.0%
GAACTGAAGGGTTGTGGGGC+TGG - chr6.2:1642321-1642340 MS.gene053006:intron 60.0%
GGCTAGAGGGACTCATCTGC+TGG - chr6.2:1643011-1643030 MS.gene053006:intron 60.0%
GGGAGTGGAGGCTGAAGACT+GGG - chr6.2:1641935-1641954 MS.gene053006:intron 60.0%
GTGCGGGTCTGGTGTTTGCA+GGG - chr6.2:1642294-1642313 MS.gene053006:intron 60.0%
GTGGAGGCTGAAGACTGGGA+TGG - chr6.2:1641939-1641958 MS.gene053006:intron 60.0%
TGGGAGTGGAGGCTGAAGAC+TGG - chr6.2:1641934-1641953 MS.gene053006:intron 60.0%
TGTGCGGGTCTGGTGTTTGC+AGG - chr6.2:1642293-1642312 MS.gene053006:intron 60.0%
CAGCACGACCATCGCCGACA+AGG + chr6.2:1642413-1642432 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 1640142 1644400 1640142 ID=MS.gene053006
chr6.2 mRNA 1640142 1644400 1640142 ID=MS.gene053006.t1;Parent=MS.gene053006
chr6.2 exon 1644223 1644400 1644223 ID=MS.gene053006.t1.exon1;Parent=MS.gene053006.t1
chr6.2 CDS 1644223 1644400 1644223 ID=cds.MS.gene053006.t1;Parent=MS.gene053006.t1
chr6.2 exon 1641477 1641598 1641477 ID=MS.gene053006.t1.exon2;Parent=MS.gene053006.t1
chr6.2 CDS 1641477 1641598 1641477 ID=cds.MS.gene053006.t1;Parent=MS.gene053006.t1
chr6.2 exon 1640986 1641104 1640986 ID=MS.gene053006.t1.exon3;Parent=MS.gene053006.t1
chr6.2 CDS 1640986 1641104 1640986 ID=cds.MS.gene053006.t1;Parent=MS.gene053006.t1
chr6.2 exon 1640142 1640250 1640142 ID=MS.gene053006.t1.exon4;Parent=MS.gene053006.t1
chr6.2 CDS 1640142 1640250 1640142 ID=cds.MS.gene053006.t1;Parent=MS.gene053006.t1
Gene Sequence

>MS.gene053006

ATGGGAGAAGAATCAACACGAGTTATGATTGGAGTGAACGAGTCAAGCTTGAAAGGTTATCCACATCCTTCAATCAGTAGCAAAGGTGCTTTCGATTGGACCGTTTCCAAAATCATTCGTAACAATGTTTCTGCTTTTCATCTTCTTTTTCTTCATGTTCAAGTTCCTGATGAAGACGGTCAGTTCCTCTCTTTCTCTCTTAATCCATTTTTTTTAATTTTGATATTGTTTTATGTAATGATATGTAGCACCGACATTTCTGATTGAAGACGCGTCAGTGTCATGTGTCAGTGTCAGACATTTCTGATCGGTGTGACACTGACGCATGTGATTACCTTCAGTTATGTCATTTTCTCAAATTACTACTGATGTGTCGGTGTTAATGTTGTTTTGTAGCATCCATATTTATGACACATGTGATTACATTCAATTGTGTTATTTTATCAGGATCATGTGTCAGTGTCGACACTTCTGATTGATGTGTCTGACACTGACACATGTGATTACCTTCAATTACGTCATTTTCTCTAATTGTTACTGATGTGTCAGTGTTGTTTTATGAAATGCTTTGTAGCATCGACACTTCACTTCTGATCAAAGAAGTGTCTAGGGACTGTGTCCGACACATGTGATTACATTCAACTGTGTTATTTTTTATTGATGTTAACGTGTCAGCTTTTAATTACATTCAGTTATGTCATTTTTCTCAAATTACTACTGATATCAATGTGTCGGTGTTAGTGTGTCTGTGTCGGTGCTTTGTTTAGAGTTTAATTTCGATGATGTAAGTGTAGAAAGATTTACGCATGAAGCGCAACTAATTATGTGTGTGACTTTAGAACTGGTTGTGGTAAAAGTAGAATGTGTCTGATGATGTAATGGTTGTGATTGAGTGATACTGTAAAAATTCTTTTTAATGATGGTGGATATGAATTGATTAAATCATTTTATAATTATATGCAATTTCTTTTAAGAAAATTCTAGCGTCTATGTGTTATTTAGCTGAGATTGTGTAGATTGAGTTTGAACATTGATAAGATTGTAGTGGTATTTTGATTTGTTATGTTAGGGAATGTTTGGATTAGCTTATTTGAGACTTTTTGTGAGAGCTTATGGAAATAGTTTATGGTTTGTACGAAAGCTGTTTTGAGCTTTTTTCCATAAGCTCTCCATGATAGCTTATCAAAATAGCTTATAATTATGATGAAAAAGCATTCCATATTTGATTTGAGTTGTGATCTTAGTAACTATTTGGATTTGACTTGTAAGGTTGTTTGGAGAGCTTATCAAAACAACATATAGCATGTCCAAAAGATGTTTTCAGCTTATTTCTATGATCTCTTTAGGATTGCTTATGAAAATAGCTTATAGCTTAAATGTAAACCATTTGAATTTATTTGATCTTTTGTTGTAGAAATAACTTATACATGCATATCTATATCACGAGGGCTCTTATGCTATAAGCACTTAATTGTTTGTCAAGCAAAGTTTCGTTTTGTTACTTAGAAAGTGTTTGTAGGAAAACTAATTTAGAGCTTATTTCGAACTATCTTATGTCTATAAGTCCTTTTCGGCTTATTGCAATAAGTTCACTGGGATAACCTATGAAAAGATGTTACACATTGGTCGTGTTGTTATAGAAATAGCTTATATATAAGCACTTAAACGATATGTGTTTAGAGATGTTCACAAAAATGTTGTGTGTGGTGCTTTAGAGAAATTGAAACATCTGGCCATTTATTTGCATCTTGCTCAAAGACGTCGAAAGTATGGAGCTTGATTTGTAATTGATTGGGAGTGGAGGCTGAAGACTGGGATGGTGATGTAGTAAACAACATCCTTTTATTCAATTCAATTTGTGAGGGTAAGAAAGGTAAAAAAAAAAAGTATCGCATTTAGTGTGGTTAACAACGGCTTGGTGTATTTGGTTGGAGTGTTATAATGTTCTTTTTAACGGGAAGGTTGTGAATTGTTTAGAGGTGGTTGATCCTATCAAACACCTATCTTGGTCTTGGTTTATGTGTAGGATTCAACACGAACTTTCGATGATCCTATTGGTGGTTGAATCCATTTGTTTGTATCCGAAGTATTTGAACGTCGCCTTCTTGCACTGTTGGTAGTCGCTGGTTCTGTTTTACTCGTATCAGTTTGTGTGCGGGTCTGGTGTTTGCAGGGAGCTGAACTGAAGGGTTGTGGGGCTGGTTCTGTGCTCATATCAGTACGTGCTCCATTTCTTTGTTGGGTGGAACTGTAGGAGATCAATTCTAGCCTTGTCGGCGATGGTCGTGCTGACAATTGGACCTGTGTAATCTTTATTCATTATGTATCTGTCAATCCTCTGTTGTGGAATTGTGAAGACAAGCTGTATATTGTTTGTTTGCTGTTGTTGGAGCAGCTTTGCACATCTTGTGCTAGTTTACTCCCATTTAATAAAAGATTGCCTATCAAAAATAAGAAAATAATCGCTTAAGTTAGTTGTTTACCAGAATGCATCCTTATGGTATTTGGTGTTCAAAATTTACCAATATCAACATTCCCTGAGATGATGAATTTGATCACCTCTCGTTTTTTATAGCCTAATGAGGGAAAGTATCTTTCTCTGTTATATCTTTCTCTTGGGTTCGGTTACTTCCTGTTTTATGCATTCTTGCCATATTTTTTTCATATTTTCCATTCACTTGTGATCCATTGTCCCTTTACTTTGAACTTAATCTAATCCAGTGAGGCATTTATTTATATTATACAAAGCAAAATAAAGGGAACTGCAATCTAATGGTTTTACTTGTGTTTCGTTTCTTGTAGGTTACGATGACGTGGATAGTATCTATGCATCAGGTGAAGACTTTAAGAACATGAAACAGCAGGAAAAGGCTAGAGGGACTCATCTGCTGGAATACTTCGTCAATAGGTGTAATGAAATTGGGGTAATAATTTTTCTACTCTACTTGTGATTTTGGATATTGTTTGGATAAAACTTATCCATAAGCACTAGTGGTAAAAGAAAATTTTAAAGAATCTTGTAATGACTGATGTTTTTAAACAATAATTCCTTACATAACCTGTGAAACTAGCTTTTCTATCTTAAGTTTTTGAGTAGCTCATGTTTAACTTCTTCATAAACAGCTTCAGATTCTTTACTGTCAAGAAAAACATGCAGTAAAGGAATCTCGACCGTTAGATGAAGATTGAACAGCTCATAATTTCGACCATCAAGGAATTTAAGTTGTTTGATCTGCATCTGATTGGTTGAGATTTATGACCACTTGACCACAAGCTAAATATTTATACATTTGTAGGTGACCTGTGAAGCATGGATAAAGCAGGGTGATCCCAAAGAAGTGATATTGAATGAGGTGAAACGGGTTCGTCCAGATTTACTAGTTGTTGGAAGCAGAGGTCTTGGACCTTTCCAAAAGTATGTGCATGATCTCTTTTTCCATTATGAATTGTCCGATTTTAAAAATAAAAAAAAAATCAAGAATGAATCATAGCTCTTAGTATTCAATTTATTCTGAAATATGTTACTAAGGATTTAATTAACATAACCAATTGTGATAAATGATGTGCTATATCAGAGCCATGATATTTTTAAATATGAATGTCTATTGAAGTATGGTATGAATTCTTAAATATGGAATGAATTTTTTGGAAATATCTTTCTAGTATGAAATTGTCAAACTTCTTATTTTGGAAATTATGGCAGTTATGTTTTTATTATGTGTCAGTTATGTTAATTAATTTTAGGAATAATTAGAGAAGAAAAGAGGAAAGTGGTGGATAGTTTGTTAATGAGTGGTTATGGGAAGGAGAGACCAAACTCTAATTCTTGGGAGAGACCAAGACTCTCGAATTTCTTGGGTAGGAATTGTCTCGTAACAGTATACTATCTCTTTACTTAGTTTATGTGTGAATTCTGCATTCTCTATAGTATGTGTAATTCTGTTTCTATTTTAAAAATTTTCTACCATCAATAATAGTCGGTTACTACAATTAAATTGTGTTTTGGTACCAGTTTCTGACAGAAATTTACATGTTATGAATCTCTTGAAGTTTCATATATACTGGTTCAATTTGTTCAACTAGTGATTTACTAGTTCAACGAGTAACTTAATTACGGTCAATAACCGGTTTGAGTTGTCATGTTCTGCAGGGTTTTTGTTGGCACGGTTAGTGAATTTTGTTGGAAGCATGCTGAATGCCCTGTCATGACTATCAAACGCAATGCAGATGAAACTCCAAGGGACCCTGTTGATGACTAG

Protein sequence

>MS.gene053006.t1

MGEESTRVMIGVNESSLKGYPHPSISSKGAFDWTVSKIIRNNVSAFHLLFLHVQVPDEDGYDDVDSIYASGEDFKNMKQQEKARGTHLLEYFVNRCNEIGVTCEAWIKQGDPKEVILNEVKRVRPDLLVVGSRGLGPFQKVFVGTVSEFCWKHAECPVMTIKRNADETPRDPVDD