AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37049

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37049.t1 MTR_8g011890 100.000 138 0 0 1 138 1 138 2.20e-99 281
MS.gene37049.t1 MTR_2g027530 36.441 118 72 2 22 137 84 200 7.54e-18 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37049.t1 AT5G09920 90.580 138 13 0 1 138 1 138 5.88e-92 262

Find 20 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGAAGTTTCATTAATTC+TGG 0.198654 8.2:-80238731 MS.gene37049:CDS
ATAGCTTCCTCTACAGTTTC+CGG 0.224138 8.2:+80237472 None:intergenic
ATTATTTCTACCTTGATAGA+TGG 0.299795 8.2:+80237439 None:intergenic
TAGCTTCCTCTACAGTTTCC+GGG 0.391236 8.2:+80237473 None:intergenic
ATATCAGTTGGCTGAATTTG+AGG 0.404625 8.2:-80237644 MS.gene37049:intron
CGAACTTGTCTAACAGCATC+AGG 0.447560 8.2:+80238251 None:intergenic
AAGAAGGAGTGAATCATGTC+TGG 0.463358 8.2:-80239663 None:intergenic
TTATTGCAGCTGTGTGTCCT+AGG 0.470406 8.2:-80237505 MS.gene37049:intron
GTGAATCATGTCTGGAGAAG+AGG 0.498449 8.2:-80239655 None:intergenic
GCAGACAAGAGGACGGGCTC+AGG 0.499865 8.2:-80236517 MS.gene37049:intron
AACGCCGCTGAACTCAAAAT+CGG 0.516766 8.2:-80239627 MS.gene37049:CDS
TGCTATGGTTCCATCTATCA+AGG 0.518144 8.2:-80237449 MS.gene37049:intron
TGTCCTAGGCAATCTTTGCC+CGG 0.566090 8.2:-80237491 MS.gene37049:CDS
AATTCTCGCTAGATATCAGT+TGG 0.570014 8.2:-80237656 MS.gene37049:CDS
TGACATGCAGACAAGAGGAC+GGG 0.581736 8.2:-80236523 MS.gene37049:intron
TTGACATGCAGACAAGAGGA+CGG 0.587911 8.2:-80236524 MS.gene37049:intron
TGTAGAGGAAGCTATTGCTA+TGG 0.591535 8.2:-80237464 MS.gene37049:CDS
TTTCCGGGCAAAGATTGCCT+AGG 0.601682 8.2:+80237488 None:intergenic
GCTGAACTCAAAATCGGAGA+TGG 0.615426 8.2:-80239621 MS.gene37049:intron
TCTTTGCCCGGAAACTGTAG+AGG 0.638263 8.2:-80237479 MS.gene37049:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAAATCATTTATGTT+TGG - chr8.2:80238150-80238169 MS.gene37049:intron 10.0%
!!! TTATTAAAATTTTATTGAGT+TGG - chr8.2:80238891-80238910 MS.gene37049:intron 10.0%
!! ATAATTAAGTGAAGAATTAA+TGG + chr8.2:80236534-80236553 None:intergenic 15.0%
!! ATATGAAGGTTATAAATAAT+GGG - chr8.2:80237119-80237138 MS.gene37049:intron 15.0%
!! TATATGAAGGTTATAAATAA+TGG - chr8.2:80237118-80237137 MS.gene37049:intron 15.0%
!!! AATAAAAAGTAATTTTGCTA+GGG + chr8.2:80237529-80237548 None:intergenic 15.0%
!!! CTTTATTTTATCTTTTGTTA+CGG + chr8.2:80236854-80236873 None:intergenic 15.0%
!!! TTTTTAATTAAAAGCATGTT+TGG + chr8.2:80238318-80238337 None:intergenic 15.0%
!! AACTAATCACTTAAAAATAG+AGG + chr8.2:80237096-80237115 None:intergenic 20.0%
!! AATCATGAGAAATAGAAAAT+GGG + chr8.2:80237910-80237929 None:intergenic 20.0%
!! AATTGTAAACTAAACTTGAT+AGG - chr8.2:80239315-80239334 MS.gene37049:intron 20.0%
!! ACTTAAATGAAAATTGTGTT+GGG - chr8.2:80237939-80237958 MS.gene37049:intron 20.0%
!! AGTATCAAAATAAAAGATCT+TGG + chr8.2:80237589-80237608 None:intergenic 20.0%
!! ATATTATGAAAGAAATGACA+TGG + chr8.2:80237967-80237986 None:intergenic 20.0%
!! ATCATTGAAAATATGTCAAT+TGG + chr8.2:80237697-80237716 None:intergenic 20.0%
!! ATTGTAAACTAAACTTGATA+GGG - chr8.2:80239316-80239335 MS.gene37049:intron 20.0%
!! GGTAAAATTTACAATTTAGT+GGG + chr8.2:80236757-80236776 None:intergenic 20.0%
!! TAAAATAACAATGTAACAGA+AGG + chr8.2:80239185-80239204 None:intergenic 20.0%
!! TAATTTAGGTATTATTACAG+CGG + chr8.2:80237647-80237666 None:intergenic 20.0%
!! TACTTAAATGAAAATTGTGT+TGG - chr8.2:80237938-80237957 MS.gene37049:intron 20.0%
!! TCATTGAAAATATGTCAATT+GGG + chr8.2:80237696-80237715 None:intergenic 20.0%
!! TTATTATCAGGATAAAGAAA+AGG - chr8.2:80238537-80238556 MS.gene37049:intron 20.0%
!! TTTACAAAAATTCCCAAAAT+TGG - chr8.2:80239042-80239061 MS.gene37049:intron 20.0%
!! TTTATATTTCTTCTCCTTAA+TGG - chr8.2:80239113-80239132 MS.gene37049:intron 20.0%
!!! AAGGACATGTTATTTAATTT+AGG + chr8.2:80237661-80237680 None:intergenic 20.0%
!!! AAGGTAAAAATTTGGAATTA+GGG + chr8.2:80236629-80236648 None:intergenic 20.0%
!!! AATGAAAAAACTTCATTTTC+TGG - chr8.2:80239275-80239294 MS.gene37049:intron 20.0%
!!! AGCAAAATTACTTTTTATTC+CGG - chr8.2:80237530-80237549 MS.gene37049:intron 20.0%
!!! AGTTTTCACATTTTATTATC+AGG - chr8.2:80238525-80238544 MS.gene37049:intron 20.0%
!!! ATAAAAAGTAATTTTGCTAG+GGG + chr8.2:80237528-80237547 None:intergenic 20.0%
!!! ATGAAAAAACTTCATTTTCT+GGG - chr8.2:80239276-80239295 MS.gene37049:intron 20.0%
!!! GAATAAAAAGTAATTTTGCT+AGG + chr8.2:80237530-80237549 None:intergenic 20.0%
!!! TAAAATTTTATTGAGTTGGT+AGG - chr8.2:80238895-80238914 MS.gene37049:intron 20.0%
!!! TATCAAGTTTAGTTTACAAT+TGG + chr8.2:80239316-80239335 None:intergenic 20.0%
! AAAACCCTAAACGAAAAATT+AGG + chr8.2:80236659-80236678 None:intergenic 25.0%
! AAAATTCCCAAAATTGGATT+TGG - chr8.2:80239048-80239067 MS.gene37049:intron 25.0%
! AAATACCCTGAAAAAATAGA+AGG + chr8.2:80237790-80237809 None:intergenic 25.0%
! AATATATTCCAGATTCATCA+TGG - chr8.2:80239222-80239241 MS.gene37049:intron 25.0%
! AATTGTAGTACTGTTAAACA+TGG - chr8.2:80239387-80239406 MS.gene37049:intron 25.0%
! AGTATATCACTTCAGAATAT+AGG + chr8.2:80237064-80237083 None:intergenic 25.0%
! ATAACACATGAACTTTGATA+CGG + chr8.2:80237472-80237491 None:intergenic 25.0%
! ATAGAAAGAGATATTACGTA+GGG + chr8.2:80238367-80238386 None:intergenic 25.0%
! CGGTAAAATTTACAATTTAG+TGG + chr8.2:80236758-80236777 None:intergenic 25.0%
! CTTAAATGAAAATTGTGTTG+GGG - chr8.2:80237940-80237959 MS.gene37049:intron 25.0%
! GAATCATGAGAAATAGAAAA+TGG + chr8.2:80237911-80237930 None:intergenic 25.0%
! TAATAAAATAGCTACCTGAT+AGG + chr8.2:80237180-80237199 None:intergenic 25.0%
! TAATAGAACATATTCACTTG+TGG + chr8.2:80236727-80236746 None:intergenic 25.0%
! TAGGACAAACATAAAGAATA+AGG + chr8.2:80237023-80237042 None:intergenic 25.0%
!! ACATCCTAATTTTTCGTTTA+GGG - chr8.2:80236652-80236671 MS.gene37049:intron 25.0%
!! AGTGATTAGTTAGTATATGA+AGG - chr8.2:80237105-80237124 MS.gene37049:intron 25.0%
!! ATGCTTGTTAAAATGAAGAA+GGG - chr8.2:80238801-80238820 MS.gene37049:intron 25.0%
!! GAAGGTAAAAATTTGGAATT+AGG + chr8.2:80236630-80236649 None:intergenic 25.0%
!! TTTTACTGATGAGATAACAT+AGG - chr8.2:80239464-80239483 MS.gene37049:intron 25.0%
!!! ATTATTTCTACCTTGATAGA+TGG + chr8.2:80238670-80238689 None:intergenic 25.0%
!!! CTTATTTTTATAAGCTCTCT+AGG + chr8.2:80236902-80236921 None:intergenic 25.0%
!!! CTTTTCCTTCTATTTTTTCA+GGG - chr8.2:80237782-80237801 MS.gene37049:intron 25.0%
!!! GATTGAACATGTTTTTAGTT+TGG - chr8.2:80237263-80237282 MS.gene37049:intron 25.0%
!!! GCAAAATTACTTTTTATTCC+GGG - chr8.2:80237531-80237550 MS.gene37049:intron 25.0%
!!! TCATTTTAACAAGCATGAAA+GGG + chr8.2:80238797-80238816 None:intergenic 25.0%
!!! TTCATTTTAACAAGCATGAA+AGG + chr8.2:80238798-80238817 None:intergenic 25.0%
!!! TTCTGTAAACTTTTTCTGTT+GGG - chr8.2:80238701-80238720 MS.gene37049:CDS 25.0%
!!! TTGGTTCAATTTTTAAGACA+GGG - chr8.2:80238169-80238188 MS.gene37049:intron 25.0%
!!! TTTCTGTAAACTTTTTCTGT+TGG - chr8.2:80238700-80238719 MS.gene37049:CDS 25.0%
!!! TTTGGTTCAATTTTTAAGAC+AGG - chr8.2:80238168-80238187 MS.gene37049:intron 25.0%
!!! TTTTATTTTGATACTACTGC+TGG - chr8.2:80237594-80237613 MS.gene37049:intron 25.0%
AAAAAAGTGAGATGCCATTA+AGG + chr8.2:80239130-80239149 None:intergenic 30.0%
ACAAATGAATGTCATATTCC+CGG + chr8.2:80237552-80237571 None:intergenic 30.0%
AGAACCAATCAGAATTTGAA+TGG + chr8.2:80237205-80237224 None:intergenic 30.0%
ATAAGAGGAGGAATCTTAAA+TGG + chr8.2:80238289-80238308 None:intergenic 30.0%
CAATGATGTTGATATAGAAG+CGG - chr8.2:80237725-80237744 MS.gene37049:intron 30.0%
CTGTGAAGTTTCATTAATTC+TGG - chr8.2:80237375-80237394 MS.gene37049:intron 30.0%
GAAAATATGTCAATTGGGTT+TGG + chr8.2:80237691-80237710 None:intergenic 30.0%
GATAGAAAGAGATATTACGT+AGG + chr8.2:80238368-80238387 None:intergenic 30.0%
GATGTGTGAAGGTAAAAATT+TGG + chr8.2:80236637-80236656 None:intergenic 30.0%
GGATAGCTGATATATAAAAC+AGG + chr8.2:80236881-80236900 None:intergenic 30.0%
GTCTAGGTAATATTCAACAT+AGG + chr8.2:80237042-80237061 None:intergenic 30.0%
TAAGATCACAATCTGATACA+GGG + chr8.2:80238419-80238438 None:intergenic 30.0%
TACACCATTCAAATTCTGAT+TGG - chr8.2:80237198-80237217 MS.gene37049:intron 30.0%
TAGAAAGAGATATTACGTAG+GGG + chr8.2:80238366-80238385 None:intergenic 30.0%
TATATTCTGGTGAGAGAAAA+TGG + chr8.2:80239208-80239227 None:intergenic 30.0%
TATCAGATTGTGATCTTAAC+TGG - chr8.2:80238421-80238440 MS.gene37049:intron 30.0%
TTAAGATCACAATCTGATAC+AGG + chr8.2:80238420-80238439 None:intergenic 30.0%
! AAAAGCAGGACGATTTTATT+GGG - chr8.2:80239084-80239103 MS.gene37049:intron 30.0%
! AGTTCTCCAAATCCAATTTT+GGG + chr8.2:80239057-80239076 None:intergenic 30.0%
! ATTTTGAACCATGATGAATC+TGG + chr8.2:80239233-80239252 None:intergenic 30.0%
! CACATCCTAATTTTTCGTTT+AGG - chr8.2:80236651-80236670 MS.gene37049:intron 30.0%
! CATGCTTGTTAAAATGAAGA+AGG - chr8.2:80238800-80238819 MS.gene37049:intron 30.0%
! CATGTTTGGTTTAAGATAAG+AGG + chr8.2:80238304-80238323 None:intergenic 30.0%
! GATCTTATGTTTTGTCATGT+TGG - chr8.2:80237237-80237256 MS.gene37049:intron 30.0%
! GATGAATCTGGAATATATTC+TGG + chr8.2:80239221-80239240 None:intergenic 30.0%
! TAAAAGCAGGACGATTTTAT+TGG - chr8.2:80239083-80239102 MS.gene37049:intron 30.0%
! TGCTTGTTAAAATGAAGAAG+GGG - chr8.2:80238802-80238821 MS.gene37049:intron 30.0%
!! AGCAGGGAATAACTTATTTT+TGG - chr8.2:80238956-80238975 MS.gene37049:intron 30.0%
!! GATGAGAAGGATTTGTTTTT+GGG - chr8.2:80238728-80238747 MS.gene37049:CDS 30.0%
!! TTTCTTTGAGATCAGCTATA+AGG - chr8.2:80236676-80236695 MS.gene37049:intron 30.0%
!!! GCTTTTCCTTCTATTTTTTC+AGG - chr8.2:80237781-80237800 MS.gene37049:intron 30.0%
!!! TGGTTCAATTTTTAAGACAG+GGG - chr8.2:80238170-80238189 MS.gene37049:intron 30.0%
AACATAAAGAATAAGGCCCT+AGG + chr8.2:80237016-80237035 None:intergenic 35.0%
AAGCAAAAAGTAGTCTAGGA+GGG + chr8.2:80238215-80238234 None:intergenic 35.0%
AATTCTCGCTAGATATCAGT+TGG - chr8.2:80238450-80238469 MS.gene37049:intron 35.0%
ATATCAGTTGGCTGAATTTG+AGG - chr8.2:80238462-80238481 MS.gene37049:intron 35.0%
ATATTAAGCGGTTTAAGTGG+CGG + chr8.2:80236778-80236797 None:intergenic 35.0%
ATATTCACTTGTGGTCTGTT+TGG + chr8.2:80236718-80236737 None:intergenic 35.0%
CAAGTACTTATGCTATAAGC+TGG + chr8.2:80236801-80236820 None:intergenic 35.0%
CACTTTGCTTTCAAAAACTC+TGG + chr8.2:80237346-80237365 None:intergenic 35.0%
CGAAAAATTAGGATGTGTGA+AGG + chr8.2:80236648-80236667 None:intergenic 35.0%
GACTATTCCCTTCACAAATT+CGG - chr8.2:80238491-80238510 MS.gene37049:intron 35.0%
GAGAACTCATAAGTAAAAGC+AGG - chr8.2:80239070-80239089 MS.gene37049:intron 35.0%
GCTATAAGCTGGATATTAAG+CGG + chr8.2:80236790-80236809 None:intergenic 35.0%
TCACTTCAGAATATAGGTCT+AGG + chr8.2:80237058-80237077 None:intergenic 35.0%
TCCTAAACCGAATTTGTGAA+GGG + chr8.2:80238501-80238520 None:intergenic 35.0%
TGATTTCCTATCTCACATGT+TGG - chr8.2:80239415-80239434 MS.gene37049:intron 35.0%
TGGATATTAAGCGGTTTAAG+TGG + chr8.2:80236781-80236800 None:intergenic 35.0%
TGTTAAAATGAAGAAGGGGA+GGG - chr8.2:80238806-80238825 MS.gene37049:intron 35.0%
TTCAGCAACTCTCAACTAAA+CGG + chr8.2:80238120-80238139 None:intergenic 35.0%
TTCCTAAACCGAATTTGTGA+AGG + chr8.2:80238502-80238521 None:intergenic 35.0%
TTGTTAAAATGAAGAAGGGG+AGG - chr8.2:80238805-80238824 MS.gene37049:intron 35.0%
TTTAGTTGAGAGTTGCTGAA+GGG - chr8.2:80238120-80238139 MS.gene37049:intron 35.0%
! AGGAAAAGCACATTACTCTA+AGG + chr8.2:80237770-80237789 None:intergenic 35.0%
! CTTTCAAAAACTCTGGAAGA+AGG + chr8.2:80237339-80237358 None:intergenic 35.0%
! GAGTTCTCCAAATCCAATTT+TGG + chr8.2:80239058-80239077 None:intergenic 35.0%
! GTTTGGTTTAAGATAAGAGG+AGG + chr8.2:80238301-80238320 None:intergenic 35.0%
! TTTAAAACCACGATCCACAA+GGG + chr8.2:80239368-80239387 None:intergenic 35.0%
! TTTTTGCTTCCCCTCAAATT+GGG - chr8.2:80238226-80238245 MS.gene37049:intron 35.0%
!! GAATCCTGTGTTTGCTTTTA+GGG - chr8.2:80238093-80238112 MS.gene37049:intron 35.0%
!! GGATGAGAAGGATTTGTTTT+TGG - chr8.2:80238727-80238746 MS.gene37049:CDS 35.0%
!! GTAGTGTTGTTTGATTGATG+AGG - chr8.2:80238921-80238940 MS.gene37049:intron 35.0%
!! TGAATCCTGTGTTTGCTTTT+AGG - chr8.2:80238092-80238111 MS.gene37049:intron 35.0%
!! TGTAAACTTTTTCTGTTGGG+CGG - chr8.2:80238704-80238723 MS.gene37049:CDS 35.0%
!!! AATTTTTAAGACAGGGGGAT+GGG - chr8.2:80238176-80238195 MS.gene37049:intron 35.0%
!!! AGAAGGATTTGTTTTTGGGA+AGG - chr8.2:80238732-80238751 MS.gene37049:CDS 35.0%
!!! GGTTCAATTTTTAAGACAGG+GGG - chr8.2:80238171-80238190 MS.gene37049:intron 35.0%
!!! TTTTAAAACCACGATCCACA+AGG + chr8.2:80239369-80239388 None:intergenic 35.0%
!!! TTTTTTGACATGCAGACAAG+AGG - chr8.2:80239578-80239597 MS.gene37049:intron 35.0%
AAAGAATAAGGCCCTAGGAT+TGG + chr8.2:80237011-80237030 None:intergenic 40.0%
AATTGGGTTTGGCAAGTTCA+AGG + chr8.2:80237680-80237699 None:intergenic 40.0%
ACAATGTAACAGAAGGCTCA+CGG + chr8.2:80239178-80239197 None:intergenic 40.0%
AGCAAAAAGTAGTCTAGGAG+GGG + chr8.2:80238214-80238233 None:intergenic 40.0%
AGCTCAAATAAGCCAATCCT+AGG - chr8.2:80236996-80237015 MS.gene37049:intron 40.0%
ATAGCTTCCTCTACAGTTTC+CGG + chr8.2:80238637-80238656 None:intergenic 40.0%
GAAGCAAAAAGTAGTCTAGG+AGG + chr8.2:80238216-80238235 None:intergenic 40.0%
GAGGTCAATACTATCTAGCA+GGG - chr8.2:80238940-80238959 MS.gene37049:intron 40.0%
GCTCAAATAAGCCAATCCTA+GGG - chr8.2:80236997-80237016 MS.gene37049:intron 40.0%
GTTTAGTTGAGAGTTGCTGA+AGG - chr8.2:80238119-80238138 MS.gene37049:intron 40.0%
TCCCTTCACAAATTCGGTTT+AGG - chr8.2:80238497-80238516 MS.gene37049:intron 40.0%
TGAGGTCAATACTATCTAGC+AGG - chr8.2:80238939-80238958 MS.gene37049:intron 40.0%
TGCTATGGTTCCATCTATCA+AGG - chr8.2:80238657-80238676 MS.gene37049:intron 40.0%
TGTAGAGGAAGCTATTGCTA+TGG - chr8.2:80238642-80238661 MS.gene37049:intron 40.0%
TTAGTTGAGAGTTGCTGAAG+GGG - chr8.2:80238121-80238140 MS.gene37049:intron 40.0%
TTCTTTCCTTGCGTTCTGTT+TGG - chr8.2:80236562-80236581 MS.gene37049:intron 40.0%
! CAGCATCAGGATTTTTGTAG+CGG + chr8.2:80237845-80237864 None:intergenic 40.0%
! CTTTTTGCTTCCCCTCAAAT+TGG - chr8.2:80238225-80238244 MS.gene37049:intron 40.0%
! GTTCATCAGCTCAATTTTGG+AGG + chr8.2:80237888-80237907 None:intergenic 40.0%
! TGGGTTCATCAGCTCAATTT+TGG + chr8.2:80237891-80237910 None:intergenic 40.0%
! TTTTGCTTCCCCTCAAATTG+GGG - chr8.2:80238227-80238246 MS.gene37049:intron 40.0%
!! GGTGTTGCTTTGATTAGTTG+TGG - chr8.2:80237140-80237159 MS.gene37049:intron 40.0%
!! GTAAACTTTTTCTGTTGGGC+GGG - chr8.2:80238705-80238724 MS.gene37049:CDS 40.0%
!! TAAACTTTTTCTGTTGGGCG+GGG - chr8.2:80238706-80238725 MS.gene37049:CDS 40.0%
!! TTTTGCTAGGGGCGTAAAAA+TGG + chr8.2:80237517-80237536 None:intergenic 40.0%
!!! ATCTCCGATTTTGAGTTCAG+CGG + chr8.2:80236486-80236505 None:intergenic 40.0%
!!! CAATTTTTAAGACAGGGGGA+TGG - chr8.2:80238175-80238194 MS.gene37049:intron 40.0%
!!! GATTTGTTTTTGGGAAGGAG+TGG - chr8.2:80238737-80238756 MS.gene37049:CDS 40.0%
AACGCCGCTGAACTCAAAAT+CGG - chr8.2:80236479-80236498 MS.gene37049:CDS 45.0%
ATATTACGTAGGGGTCCGTT+TGG + chr8.2:80238357-80238376 None:intergenic 45.0%
ATCCAAATCCCCCCAATTTG+AGG + chr8.2:80238240-80238259 None:intergenic 45.0%
CAATGTAACAGAAGGCTCAC+GGG + chr8.2:80239177-80239196 None:intergenic 45.0%
CCACAACCAACATGTGAGAT+AGG + chr8.2:80239424-80239443 None:intergenic 45.0%
CGAACTTGTCTAACAGCATC+AGG + chr8.2:80237858-80237877 None:intergenic 45.0%
GAAGAAGGGGAGGGAAATAA+AGG - chr8.2:80238815-80238834 MS.gene37049:intron 45.0%
GCAGCTTCACACAACTCAAT+AGG + chr8.2:80239492-80239511 None:intergenic 45.0%
GCTGAACTCAAAATCGGAGA+TGG - chr8.2:80236485-80236504 MS.gene37049:CDS 45.0%
GGGGAAGCAAAAAGTAGTCT+AGG + chr8.2:80238219-80238238 None:intergenic 45.0%
TAGCTTCCTCTACAGTTTCC+GGG + chr8.2:80238636-80238655 None:intergenic 45.0%
TCCAAATCCCCCCAATTTGA+GGG + chr8.2:80238239-80238258 None:intergenic 45.0%
TCTCCCTTCGTTGAACCAAA+CGG - chr8.2:80238339-80238358 MS.gene37049:intron 45.0%
TTAGTTGTGGCCTATCACTG+TGG - chr8.2:80237153-80237172 MS.gene37049:intron 45.0%
TTATTGCAGCTGTGTGTCCT+AGG - chr8.2:80238601-80238620 MS.gene37049:intron 45.0%
TTCAAGCCAAACAGAACGCA+AGG + chr8.2:80236571-80236590 None:intergenic 45.0%
TTGACATGCAGACAAGAGGA+CGG - chr8.2:80239582-80239601 MS.gene37049:intron 45.0%
TTTGCTTCCCCTCAAATTGG+GGG - chr8.2:80238228-80238247 MS.gene37049:intron 45.0%
! CCTATCTCACATGTTGGTTG+TGG - chr8.2:80239421-80239440 MS.gene37049:intron 45.0%
! GAAGTATTCTTGCACCCTTG+TGG - chr8.2:80239351-80239370 MS.gene37049:intron 45.0%
ATTGGGGGGATTTGGATGTG+AGG - chr8.2:80238243-80238262 MS.gene37049:intron 50.0%
CCAAATCCCCCCAATTTGAG+GGG + chr8.2:80238238-80238257 None:intergenic 50.0%
CCTATCACTGTGGTCCTATC+AGG - chr8.2:80237163-80237182 MS.gene37049:intron 50.0%
CCTGATAGGACCACAGTGAT+AGG + chr8.2:80237166-80237185 None:intergenic 50.0%
CGGACCCTAAAAGCAAACAC+AGG + chr8.2:80238100-80238119 None:intergenic 50.0%
TCTTTGCCCGGAAACTGTAG+AGG - chr8.2:80238627-80238646 MS.gene37049:intron 50.0%
TGACATGCAGACAAGAGGAC+GGG - chr8.2:80239583-80239602 MS.gene37049:intron 50.0%
TGTCCTAGGCAATCTTTGCC+CGG - chr8.2:80238615-80238634 MS.gene37049:intron 50.0%
TTGAGAGTTGCTGAAGGGGA+GGG - chr8.2:80238125-80238144 MS.gene37049:intron 50.0%
TTGCTTCCCCTCAAATTGGG+GGG - chr8.2:80238229-80238248 MS.gene37049:intron 50.0%
TTTCCGGGCAAAGATTGCCT+AGG + chr8.2:80238621-80238640 None:intergenic 50.0%
! GGTCCGTTTGGTTCAACGAA+GGG + chr8.2:80238345-80238364 None:intergenic 50.0%
! TGGGAAGGAGTGGTGATGTT+AGG - chr8.2:80238747-80238766 MS.gene37049:CDS 50.0%
! TTTAAGACAGGGGGATGGGA+GGG - chr8.2:80238180-80238199 MS.gene37049:intron 50.0%
!!! TTTTAAGACAGGGGGATGGG+AGG - chr8.2:80238179-80238198 MS.gene37049:intron 50.0%
CCCCTCAAATTGGGGGGATT+TGG - chr8.2:80238235-80238254 MS.gene37049:intron 55.0%
GTTGAGAGTTGCTGAAGGGG+AGG - chr8.2:80238124-80238143 MS.gene37049:intron 55.0%
TCTTGCACCCTTGTGGATCG+TGG - chr8.2:80239358-80239377 MS.gene37049:intron 55.0%
TGAGAGTTGCTGAAGGGGAG+GGG - chr8.2:80238126-80238145 MS.gene37049:intron 55.0%
! GGGTCCGTTTGGTTCAACGA+AGG + chr8.2:80238346-80238365 None:intergenic 55.0%
TCTGTTGGGCGGGGATGAGA+AGG - chr8.2:80238715-80238734 MS.gene37049:CDS 60.0%
! GCAGACAAGAGGACGGGCTC+AGG - chr8.2:80239589-80239608 MS.gene37049:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 80236458 80239670 80236458 ID=MS.gene37049
chr8.2 mRNA 80236458 80239670 80236458 ID=MS.gene37049.t1;Parent=MS.gene37049
chr8.2 exon 80239622 80239670 80239622 ID=MS.gene37049.t1.exon1;Parent=MS.gene37049.t1
chr8.2 CDS 80239622 80239670 80239622 ID=cds.MS.gene37049.t1;Parent=MS.gene37049.t1
chr8.2 exon 80238673 80238781 80238673 ID=MS.gene37049.t1.exon2;Parent=MS.gene37049.t1
chr8.2 CDS 80238673 80238781 80238673 ID=cds.MS.gene37049.t1;Parent=MS.gene37049.t1
chr8.2 exon 80238248 80238325 80238248 ID=MS.gene37049.t1.exon3;Parent=MS.gene37049.t1
chr8.2 CDS 80238248 80238325 80238248 ID=cds.MS.gene37049.t1;Parent=MS.gene37049.t1
chr8.2 exon 80237645 80237678 80237645 ID=MS.gene37049.t1.exon4;Parent=MS.gene37049.t1
chr8.2 CDS 80237645 80237678 80237645 ID=cds.MS.gene37049.t1;Parent=MS.gene37049.t1
chr8.2 exon 80237450 80237518 80237450 ID=MS.gene37049.t1.exon5;Parent=MS.gene37049.t1
chr8.2 CDS 80237450 80237518 80237450 ID=cds.MS.gene37049.t1;Parent=MS.gene37049.t1
chr8.2 exon 80236458 80236535 80236458 ID=MS.gene37049.t1.exon6;Parent=MS.gene37049.t1
chr8.2 CDS 80236458 80236535 80236458 ID=cds.MS.gene37049.t1;Parent=MS.gene37049.t1
Gene Sequence

>MS.gene37049

ATGTCTGGAGAAGAGGAAGAAAACGCCGCTGAACTCAAAATCGGAGATGGTAAATTCTCATTCTCGTTTTTCTCCATTAATTCTTCACTTAATTATCGATTCGCTTCTTTCCTTGCGTTCTGTTTGGCTTGAATTTCGCAGTGTTGCATCATTAGTAAATTTTGAAATCCCTAATTCCAAATTTTTACCTTCACACATCCTAATTTTTCGTTTAGGGTTTTCTTTGAGATCAGCTATAAGGTTAAAATCATGTCTTACCAAACAGACCACAAGTGAATATGTTCTATTACGTTGTTCCCACTAAATTGTAAATTTTACCGCCACTTAAACCGCTTAATATCCAGCTTATAGCATAAGTACTTGTCACATGTAAGCGCTTATTATAATCTATTTCCGTAACAAAAGATAAAATAAAGTAAACCTGTTTTATATATCAGCTATCCTAGAGAGCTTATAAAAATAAGCTGAAAATAGCTTATGAACATGTCATAAGCTGTTTATCATAACTTCTTCTCACAAGTGCTCATGTCAGTAGATAAGCTCAAATAAGCCAATCCTAGGGCCTTATTCTTTATGTTTGTCCTATGTTGAATATTACCTAGACCTATATTCTGAAGTGATATACTATAATACTACCTCTATTTTTAAGTGATTAGTTAGTATATGAAGGTTATAAATAATGGGTGTTGCTTTGATTAGTTGTGGCCTATCACTGTGGTCCTATCAGGTAGCTATTTTATTACACCATTCAAATTCTGATTGGTTCTTTGATAGACAATGATCTTATGTTTTGTCATGTTGGATTGATTGAACATGTTTTTAGTTTGGTATAATTATTGCGACTTTTTGTTCTTTGCACTAAAGAAGTAGTTTTTTTTCCTTCTTCCAGAGTTTTTGAAAGCAAAGTGCTTGATGAACTGTGAAGTTTCATTAATTCTGGAGCACAAATATGAGCAGCTTCAGCAGTCGTCTGATGATGCTATGAATCAAGTTTCTCAGTGAGTTGAAATTCCGTATCAAAGTTCATGTGTTATTCTGACATTAAGTTAATGCATACCATTTTTACGCCCCTAGCAAAATTACTTTTTATTCCGGGAATATGACATTCATTTGTTATGCTTAATGACTCCAAGATCTTTTATTTTGATACTACTGCTGGAAGAAGAGAGTTATGCTTTGATGTCTGCCGCTGTAATAATACCTAAATTAAATAACATGTCCTTGAACTTGCCAAACCCAATTGACATATTTTCAATGATGAATTTGACAATGATGTTGATATAGAAGCGGAGTAATGTTGTAGTTAGCACCTTAGAGTAATGTGCTTTTCCTTCTATTTTTTCAGGGTATTTGAAAAGTCATTGCAGTATGTGAAACGTTTCAGCCGCTACAAAAATCCTGATGCTGTTAGACAAGTTCGAGAGTATCCTCCAAAATTGAGCTGATGAACCCATTTTCTATTTCTCATGATTCATATATTTACTTAAATGAAAATTGTGTTGGGGTCCATGTCATTTCTTTCATAATATATATTTACTTAAATGAAAATTGTGTTGGGGTACATCTCATTTCTTTCATGATGATGAATAATCTCGTTTTCTTTTATTTCTTGATTGACTTTTCTCTTGTCTTTCTGAATCCTGTGTTTGCTTTTAGGGTCCGTTTAGTTGAGAGTTGCTGAAGGGGAGGGGATATTTTAAATCATTTATGTTTGGTTCAATTTTTAAGACAGGGGGATGGGAGGGAATCAAAACCCCTCCTAGACTACTTTTTGCTTCCCCTCAAATTGGGGGGATTTGGATGTGAGGTGACTAAAAACACTTCTAAACCATTTAAGATTCCTCCTCTTATCTTAAACCAAACATGCTTTTAATTAAAAACTCTCCCTTCGTTGAACCAAACGGACCCCTACGTAATATCTCTTTCTATCATTTAATAAGAAATTTGAAATTGCAAAGCCCTGTATCAGATTGTGATCTTAACTGGCTTAAGAATTCTCGCTAGATATCAGTTGGCTGAATTTGAGGTAATATGACTATTCCCTTCACAAATTCGGTTTAGGAAGCAAGTTTTCACATTTTATTATCAGGATAAAGAAAAGGAGTTATAATTTCACACAATACAATTAACTGTTTCAATGAATTTATTGCAGCTGTGTGTCCTAGGCAATCTTTGCCCGGAAACTGTAGAGGAAGCTATTGCTATGGTTCCATCTATCAAGGTAGAAATAATTTGCTTCTTCTTTCTGTAAACTTTTTCTGTTGGGCGGGGATGAGAAGGATTTGTTTTTGGGAAGGAGTGGTGATGTTAGGTCAATTTAAAATGATTTTCATTCTCCCTTTCATGCTTGTTAAAATGAAGAAGGGGAGGGAAATAAAGGCATGCATTGAATCAAATATGATGTTCTATAAATTTATCTCTTTGAATAAATTTTTATTAAAATTTTATTGAGTTGGTAGGACAGTAGTGTTGTTTGATTGATGAGGTCAATACTATCTAGCAGGGAATAACTTATTTTTGGTGTAAAATTCTGTTTTGACAATGAGCAAAATCAGAAATATCGCATGTTATTGTGACAATTAAATTTACAAAAATTCCCAAAATTGGATTTGGAGAACTCATAAGTAAAAGCAGGACGATTTTATTGGGTTACTATTTATATTTCTTCTCCTTAATGGCATCTCACTTTTTTATTAATATGTTTTCATTTATTCTTCCCGTGAGCCTTCTGTTACATTGTTATTTTACCATTTTCTCTCACCAGAATATATTCCAGATTCATCATGGTTCAAAATGTTTTTTCTGACAGATAGAATTAATGAAAAAACTTCATTTTCTGGGTGTATGTGTGTTGTCCAATTGTAAACTAAACTTGATAGGGTGATTGACATTTGAAGTATTCTTGCACCCTTGTGGATCGTGGTTTTAAAATTGTAGTACTGTTAAACATGGTCTATTGATTTCCTATCTCACATGTTGGTTGTGGTCTAACATTAAATTTTATGATTTTACTGATGAGATAACATAGGCTCCTATTGAGTTGTGTGAAGCTGCTGAGCAAGTTACAGTTCACACACTAAATTTGTGTAACAACTAATACATCTTTTCTGTTATGTGTCATTTTTTGACATGCAGACAAGAGGACGGGCTCAGGATGATGAAGCAATTGAGAAGATGTTAAATGACTTATCACTGATTAAGAAATTTGAATAA
Protein sequence

>MS.gene37049.t1

MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLSLIKKFE