Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35156.t1 | XP_003608502.1 | 100 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 5.70E-96 | 360.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35156.t1 | P46279 | 98.9 | 176 | 2 | 0 | 1 | 176 | 1 | 176 | 6.8e-98 | 357.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35156.t1 | B7FHG8 | 100.0 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 4.1e-96 | 360.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92623 | MS.gene35156 | PPI |
| MS.gene37049 | MS.gene35156 | PPI |
| MS.gene57186 | MS.gene35156 | PPI |
| MS.gene04856 | MS.gene35156 | PPI |
| MS.gene017939 | MS.gene35156 | PPI |
| MS.gene021324 | MS.gene35156 | PPI |
| MS.gene92338 | MS.gene35156 | PPI |
| MS.gene015218 | MS.gene35156 | PPI |
| MS.gene20260 | MS.gene35156 | PPI |
| MS.gene020134 | MS.gene35156 | PPI |
| MS.gene20258 | MS.gene35156 | PPI |
| MS.gene015219 | MS.gene35156 | PPI |
| MS.gene34548 | MS.gene35156 | PPI |
| MS.gene38651 | MS.gene35156 | PPI |
| MS.gene35156 | MS.gene046919 | PPI |
| MS.gene35156 | MS.gene072357 | PPI |
| MS.gene014162 | MS.gene35156 | PPI |
| MS.gene09560 | MS.gene35156 | PPI |
| MS.gene57185 | MS.gene35156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35156.t1 | MTR_4g096810 | 100.000 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 4.65e-129 | 359 |
| MS.gene35156.t1 | MTR_1g475140 | 34.615 | 156 | 96 | 6 | 22 | 173 | 30 | 183 | 8.15e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35156.t1 | AT5G59180 | 91.429 | 175 | 15 | 0 | 1 | 175 | 1 | 175 | 5.84e-120 | 336 |
| MS.gene35156.t1 | AT4G14660 | 32.680 | 153 | 98 | 4 | 23 | 172 | 27 | 177 | 1.20e-17 | 76.6 |
| MS.gene35156.t1 | AT4G14660 | 32.680 | 153 | 98 | 4 | 23 | 172 | 27 | 177 | 1.20e-17 | 76.6 |
| MS.gene35156.t1 | AT4G14660 | 32.680 | 153 | 98 | 4 | 23 | 172 | 27 | 177 | 1.20e-17 | 76.6 |
| MS.gene35156.t1 | AT3G22900 | 31.373 | 153 | 101 | 3 | 19 | 168 | 21 | 172 | 2.03e-16 | 73.2 |
| MS.gene35156.t1 | AT3G22900 | 31.373 | 153 | 101 | 3 | 19 | 168 | 21 | 172 | 2.03e-16 | 73.2 |
Find 43 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTGAGGCTAAAGATAAT+TGG | 0.250831 | 4.4:-19315936 | MS.gene35156:CDS |
| ACCCAAGAAATCGTCTTTAA+TGG | 0.252979 | 4.4:+19314700 | None:intergenic |
| TTCGACGTCTTTCATTAGTT+TGG | 0.291336 | 4.4:+19317387 | None:intergenic |
| TCTAAGATCTCTCCCTTAAA+TGG | 0.305785 | 4.4:+19316848 | None:intergenic |
| TCAGTTGATTCCAGATGATA+TGG | 0.307276 | 4.4:-19316144 | MS.gene35156:intron |
| ACAACACATTGATACTTAAC+TGG | 0.334226 | 4.4:+19316878 | None:intergenic |
| AGGTGAATTTAAACTGTTGC+AGG | 0.336659 | 4.4:+19314665 | None:intergenic |
| TACCATTAAAGACGATTTCT+TGG | 0.338650 | 4.4:-19314702 | MS.gene35156:CDS |
| AAGACGTCGAAGGCACTTGC+AGG | 0.412801 | 4.4:-19317375 | MS.gene35156:intron |
| CCATCTGAAGTAGTGTAGTT+TGG | 0.431946 | 4.4:+19316101 | None:intergenic |
| GTCTGGAATTCCATATCATC+TGG | 0.433232 | 4.4:+19316134 | None:intergenic |
| AAGTGAGGCTAAAGATAATT+GGG | 0.441196 | 4.4:-19315935 | MS.gene35156:CDS |
| TATAAATAAACTTACATGGT+TGG | 0.447507 | 4.4:+19316643 | None:intergenic |
| CAACTGCATCCACGCTACTT+TGG | 0.456540 | 4.4:-19317436 | MS.gene35156:CDS |
| ACCATTAAAGACGATTTCTT+GGG | 0.460088 | 4.4:-19314701 | MS.gene35156:CDS |
| GGATTTGTGGTGGCGGTGAC+GGG | 0.462372 | 4.4:-19316956 | MS.gene35156:CDS |
| TGGATTTGTGGTGGCGGTGA+CGG | 0.486501 | 4.4:-19316957 | MS.gene35156:CDS |
| AGTTTGGCATGTCTCCAGTC+TGG | 0.489328 | 4.4:+19316117 | None:intergenic |
| TTGGAAACGAAGATTTGAAC+TGG | 0.502780 | 4.4:+19316662 | None:intergenic |
| AACTGGAAATGTCACAAATC+CGG | 0.505554 | 4.4:+19316895 | None:intergenic |
| GGAATTGAGAACATTGGTAA+AGG | 0.511677 | 4.4:-19316935 | MS.gene35156:CDS |
| GGGATAATTCGTGATGGGAC+CGG | 0.514333 | 4.4:-19316914 | MS.gene35156:CDS |
| GAATTGAGAACATTGGTAAA+GGG | 0.515497 | 4.4:-19316934 | MS.gene35156:CDS |
| CCAAACTACACTACTTCAGA+TGG | 0.523620 | 4.4:-19316101 | MS.gene35156:CDS |
| CTATTACACAGTGGTCGACA+TGG | 0.559149 | 4.4:-19316977 | MS.gene35156:intron |
| TGTTGTTACCATGGTGAACA+AGG | 0.559537 | 4.4:-19316822 | MS.gene35156:intron |
| CTACACTACTTCAGATGGAT+CGG | 0.562802 | 4.4:-19316096 | MS.gene35156:intron |
| CAGTGGTCGACATGGATTTG+TGG | 0.563376 | 4.4:-19316969 | MS.gene35156:CDS |
| GGTGAATTTAAACTGTTGCA+GGG | 0.565464 | 4.4:+19314666 | None:intergenic |
| CTTAGAAGCTGTTGTTACCA+TGG | 0.567172 | 4.4:-19316831 | MS.gene35156:CDS |
| GATGATATGGAATTCCAGAC+TGG | 0.590970 | 4.4:-19316131 | MS.gene35156:CDS |
| GGTAAAGGGATAATTCGTGA+TGG | 0.598133 | 4.4:-19316920 | MS.gene35156:CDS |
| GTAAAGGGATAATTCGTGAT+GGG | 0.604324 | 4.4:-19316919 | MS.gene35156:CDS |
| TGTTTCGCTCCAGCACTATG+TGG | 0.610423 | 4.4:+19317461 | None:intergenic |
| AAAGATAATTGGGACTCGAG+TGG | 0.614804 | 4.4:-19315925 | MS.gene35156:CDS |
| TCGACATGGATTTGTGGTGG+CGG | 0.622425 | 4.4:-19316963 | MS.gene35156:CDS |
| TGGAAACAAGATTATCACGA+AGG | 0.623150 | 4.4:+19317407 | None:intergenic |
| TGCACAAACCTTGTTCACCA+TGG | 0.635657 | 4.4:+19316814 | None:intergenic |
| GTGACGGGAATTGAGAACAT+TGG | 0.640814 | 4.4:-19316941 | MS.gene35156:CDS |
| TTCAGAAAGATAGTGAAGTG+AGG | 0.652885 | 4.4:-19315950 | MS.gene35156:CDS |
| AAACTAATGAAAGACGTCGA+AGG | 0.661613 | 4.4:-19317385 | MS.gene35156:CDS |
| AGGTTACGACCAAAGTAGCG+TGG | 0.680189 | 4.4:+19317427 | None:intergenic |
| TGGTCGACATGGATTTGTGG+TGG | 0.690678 | 4.4:-19316966 | MS.gene35156:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTATCATAAACTA+AGG | + | chr4.4:19316441-19316460 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTTTAAGTTCA+TGG | - | chr4.4:19316451-19316470 | MS.gene35156:intron | 10.0% |
| !! | AAGTTTAATTACTACAATTA+TGG | + | chr4.4:19314817-19314836 | None:intergenic | 15.0% |
| !! | AGTTTAATTACTACAATTAT+GGG | + | chr4.4:19314816-19314835 | None:intergenic | 15.0% |
| !! | TAATTGTAGTAATTAAACTT+AGG | - | chr4.4:19314817-19314836 | MS.gene35156:intron | 15.0% |
| !!! | GTTTTATAAATAAACTTACA+TGG | + | chr4.4:19315506-19315525 | None:intergenic | 15.0% |
| !!! | TAACTATTTATCATGTTTTA+TGG | - | chr4.4:19317350-19317369 | MS.gene35156:intron | 15.0% |
| !!! | TTCATATTTGCTTTTATAAT+TGG | + | chr4.4:19316507-19316526 | None:intergenic | 15.0% |
| !!! | TTTCTTTTCAATTTTGTTTT+TGG | - | chr4.4:19314915-19314934 | MS.gene35156:intron | 15.0% |
| !! | AACAATAATAACAGTATCTT+AGG | + | chr4.4:19315548-19315567 | None:intergenic | 20.0% |
| !! | AACATTATCTAATGCTAAAA+CGG | + | chr4.4:19317152-19317171 | None:intergenic | 20.0% |
| !! | AGTTAATTAAAACATCTTAC+AGG | + | chr4.4:19317099-19317118 | None:intergenic | 20.0% |
| !! | AGTTATATACAAAAGATCAA+AGG | + | chr4.4:19317335-19317354 | None:intergenic | 20.0% |
| !! | ATAAAAGATTAACCTATACT+TGG | + | chr4.4:19316913-19316932 | None:intergenic | 20.0% |
| !! | ATAATTTAGCATAAAACTGA+TGG | + | chr4.4:19316310-19316329 | None:intergenic | 20.0% |
| !! | ATTTGTACATATCATAAAAG+TGG | - | chr4.4:19316790-19316809 | MS.gene35156:intron | 20.0% |
| !! | GAAATAAACCTGTAATAATT+TGG | - | chr4.4:19315089-19315108 | MS.gene35156:intron | 20.0% |
| !! | TAATTTAGCATAAAACTGAT+GGG | + | chr4.4:19316309-19316328 | None:intergenic | 20.0% |
| !! | TATAAATAAACTTACATGGT+TGG | + | chr4.4:19315502-19315521 | None:intergenic | 20.0% |
| !! | TATTATAGACATTGTTAGTT+TGG | + | chr4.4:19315038-19315057 | None:intergenic | 20.0% |
| !! | TGATTCTCATTAAGAAATAT+TGG | + | chr4.4:19317184-19317203 | None:intergenic | 20.0% |
| !! | TTTAAGAGATTCGAATTAAT+AGG | - | chr4.4:19316333-19316352 | MS.gene35156:intron | 20.0% |
| !!! | AAATGAGAATCATGATTTTA+AGG | + | chr4.4:19315583-19315602 | None:intergenic | 20.0% |
| !!! | AGAGAGCAATTTTTTTTTTT+AGG | - | chr4.4:19316105-19316124 | MS.gene35156:CDS | 20.0% |
| !!! | ATTATAGACATTGTTAGTTT+GGG | + | chr4.4:19315037-19315056 | None:intergenic | 20.0% |
| !!! | GTTAATCTTTTATCACTTTT+GGG | - | chr4.4:19316920-19316939 | MS.gene35156:CDS | 20.0% |
| !!! | TTAATCTTTTATCACTTTTG+GGG | - | chr4.4:19316921-19316940 | MS.gene35156:CDS | 20.0% |
| !!! | TTTATTTTTAAGTTCATGGT+AGG | - | chr4.4:19316455-19316474 | MS.gene35156:intron | 20.0% |
| ! | AAGAAAGAATAACTTAAGAC+AGG | + | chr4.4:19315639-19315658 | None:intergenic | 25.0% |
| ! | ACAGTGCATTATTTCATTAA+AGG | + | chr4.4:19316709-19316728 | None:intergenic | 25.0% |
| ! | AGTTTGATCCAAATTATTAC+AGG | + | chr4.4:19315100-19315119 | None:intergenic | 25.0% |
| ! | ATAATAATTTCTCGTTGAAG+AGG | - | chr4.4:19316081-19316100 | MS.gene35156:intron | 25.0% |
| ! | ATTTATGTACTTGAGATTAG+AGG | - | chr4.4:19315599-19315618 | MS.gene35156:intron | 25.0% |
| ! | GAAAAATAATCAGAAGTAAC+TGG | + | chr4.4:19317056-19317075 | None:intergenic | 25.0% |
| !! | AATGTGTTTTCTTCTGTTTT+TGG | - | chr4.4:19316138-19316157 | MS.gene35156:CDS | 25.0% |
| !! | ATAATAACCTTTTTGTGTCT+TGG | - | chr4.4:19315052-19315071 | MS.gene35156:intron | 25.0% |
| !! | GGTTAATCTTTTATCACTTT+TGG | - | chr4.4:19316919-19316938 | MS.gene35156:CDS | 25.0% |
| !! | TTATAGACATTGTTAGTTTG+GGG | + | chr4.4:19315036-19315055 | None:intergenic | 25.0% |
| AAGTGAGGCTAAAGATAATT+GGG | - | chr4.4:19316207-19316226 | MS.gene35156:intron | 30.0% | |
| AATGAAAAAACCTCAAGTGA+TGG | + | chr4.4:19314853-19314872 | None:intergenic | 30.0% | |
| AATTAGTCCAAGACACAAAA+AGG | + | chr4.4:19315062-19315081 | None:intergenic | 30.0% | |
| ACAACACATTGATACTTAAC+TGG | + | chr4.4:19315267-19315286 | None:intergenic | 30.0% | |
| ACATGAGGAAATAGTAACAA+AGG | + | chr4.4:19315944-19315963 | None:intergenic | 30.0% | |
| ACCATTAAAGACGATTTCTT+GGG | - | chr4.4:19317441-19317460 | MS.gene35156:CDS | 30.0% | |
| ACTGAAAGCTGCAATATATA+TGG | + | chr4.4:19316263-19316282 | None:intergenic | 30.0% | |
| ACTTATGTTCTTCTGAATGA+TGG | - | chr4.4:19315738-19315757 | MS.gene35156:intron | 30.0% | |
| AGTAAAGTAAAATTGCAGCA+TGG | + | chr4.4:19316975-19316994 | None:intergenic | 30.0% | |
| ATCTTAGGTATAAGTGCAAA+AGG | + | chr4.4:19315533-19315552 | None:intergenic | 30.0% | |
| CAACTGAAAGGAGAAAAAAA+GGG | + | chr4.4:19315985-19316004 | None:intergenic | 30.0% | |
| CAAGAAACAAAAGCTATATC+TGG | + | chr4.4:19316382-19316401 | None:intergenic | 30.0% | |
| CTGAAAGCTGCAATATATAT+GGG | + | chr4.4:19316262-19316281 | None:intergenic | 30.0% | |
| GAATTGAGAACATTGGTAAA+GGG | - | chr4.4:19315208-19315227 | MS.gene35156:intron | 30.0% | |
| GATCAAGACAAAAATACATG+AGG | + | chr4.4:19315959-19315978 | None:intergenic | 30.0% | |
| GATCACTATCTGTATGAAAA+TGG | - | chr4.4:19315822-19315841 | MS.gene35156:intron | 30.0% | |
| GTGATAAAAGATTAACCAAG+TGG | + | chr4.4:19316840-19316859 | None:intergenic | 30.0% | |
| TACCATTAAAGACGATTTCT+TGG | - | chr4.4:19317440-19317459 | MS.gene35156:CDS | 30.0% | |
| TCAACTGAAAGGAGAAAAAA+AGG | + | chr4.4:19315986-19316005 | None:intergenic | 30.0% | |
| TTCTTGCAAGGTTTGAAAAA+AGG | - | chr4.4:19315856-19315875 | MS.gene35156:intron | 30.0% | |
| ! | TGTCTTGGACTAATTTTGTT+TGG | - | chr4.4:19315067-19315086 | MS.gene35156:intron | 30.0% |
| ! | TTTTGAACGTTACTTGAAGA+TGG | - | chr4.4:19314974-19314993 | MS.gene35156:intron | 30.0% |
| !! | ATATAGCTTTTGTTTCTTGC+AGG | - | chr4.4:19316383-19316402 | MS.gene35156:intron | 30.0% |
| !! | ATTGTGATATTGAGTTGGAT+AGG | - | chr4.4:19316608-19316627 | MS.gene35156:intron | 30.0% |
| !! | GTTGTTTTCAGACCATTTAA+GGG | - | chr4.4:19315282-19315301 | MS.gene35156:intron | 30.0% |
| !! | TAATTAACTTGTGATAGCGA+TGG | - | chr4.4:19317110-19317129 | MS.gene35156:intron | 30.0% |
| !! | TTTGTGTTGATGCAACTTTT+GGG | - | chr4.4:19315135-19315154 | MS.gene35156:intron | 30.0% |
| !!! | GTTTTCATTGATTTCTTGCA+AGG | - | chr4.4:19315844-19315863 | MS.gene35156:intron | 30.0% |
| !!! | TGTTGTTTTCAGACCATTTA+AGG | - | chr4.4:19315281-19315300 | MS.gene35156:intron | 30.0% |
| !!! | TTGATCGTTTGTTTTTTTGC+AGG | - | chr4.4:19316163-19316182 | MS.gene35156:intron | 30.0% |
| AAACTAATGAAAGACGTCGA+AGG | - | chr4.4:19314757-19314776 | MS.gene35156:intron | 35.0% | |
| AACTGGAAATGTCACAAATC+CGG | + | chr4.4:19315250-19315269 | None:intergenic | 35.0% | |
| AAGGCAAAACAGAATAGCTA+CGG | + | chr4.4:19315925-19315944 | None:intergenic | 35.0% | |
| ACCCAAGAAATCGTCTTTAA+TGG | + | chr4.4:19317445-19317464 | None:intergenic | 35.0% | |
| AGTGAGGGGAATGAAAAAAT+AGG | + | chr4.4:19317231-19317250 | None:intergenic | 35.0% | |
| ATAAACTAAGGCTGTTCTCT+AGG | + | chr4.4:19316429-19316448 | None:intergenic | 35.0% | |
| ATATGAATAGACCCACTACA+TGG | - | chr4.4:19316520-19316539 | MS.gene35156:intron | 35.0% | |
| CTAATGCTAAAACGGTAACT+AGG | + | chr4.4:19317144-19317163 | None:intergenic | 35.0% | |
| CTGTATTAAGATGCAGAACA+TGG | - | chr4.4:19316996-19317015 | MS.gene35156:intron | 35.0% | |
| GAAGTGAGGCTAAAGATAAT+TGG | - | chr4.4:19316206-19316225 | MS.gene35156:intron | 35.0% | |
| GGAATTGAGAACATTGGTAA+AGG | - | chr4.4:19315207-19315226 | MS.gene35156:intron | 35.0% | |
| GTAAAGGGATAATTCGTGAT+GGG | - | chr4.4:19315223-19315242 | MS.gene35156:intron | 35.0% | |
| TATCAGTTCATTGCATTCAC+AGG | - | chr4.4:19316754-19316773 | MS.gene35156:intron | 35.0% | |
| TATTCGTGTTATAGCCCTAA+GGG | + | chr4.4:19317256-19317275 | None:intergenic | 35.0% | |
| TCAGGATTGTGATATTGAGT+TGG | - | chr4.4:19316603-19316622 | MS.gene35156:intron | 35.0% | |
| TCTTACAGGATAATCATGCA+AGG | + | chr4.4:19317085-19317104 | None:intergenic | 35.0% | |
| TGAAAGTGACTACCAAGTAT+AGG | - | chr4.4:19316898-19316917 | MS.gene35156:CDS | 35.0% | |
| TGAGTTCTGTTTGTACAGAT+GGG | - | chr4.4:19315438-19315457 | MS.gene35156:intron | 35.0% | |
| TGGAAACAAGATTATCACGA+AGG | + | chr4.4:19314738-19314757 | None:intergenic | 35.0% | |
| TGTACGTATTCTTCAAGTAG+TGG | + | chr4.4:19314882-19314901 | None:intergenic | 35.0% | |
| TTCAGAAAGATAGTGAAGTG+AGG | - | chr4.4:19316192-19316211 | MS.gene35156:intron | 35.0% | |
| TTCGACGTCTTTCATTAGTT+TGG | + | chr4.4:19314758-19314777 | None:intergenic | 35.0% | |
| TTGAGTTCTGTTTGTACAGA+TGG | - | chr4.4:19315437-19315456 | MS.gene35156:intron | 35.0% | |
| TTGGAAACGAAGATTTGAAC+TGG | + | chr4.4:19315483-19315502 | None:intergenic | 35.0% | |
| ! | ATCATCTGGAATCAACTGAA+AGG | + | chr4.4:19315997-19316016 | None:intergenic | 35.0% |
| ! | TATGCTAGTGTTTTACCACT+TGG | - | chr4.4:19316822-19316841 | MS.gene35156:intron | 35.0% |
| ! | TCAGTTGATTCCAGATGATA+TGG | - | chr4.4:19315998-19316017 | MS.gene35156:intron | 35.0% |
| ! | TCTAAGATCTCTCCCTTAAA+TGG | + | chr4.4:19315297-19315316 | None:intergenic | 35.0% |
| ! | TTGTTAGTTTGGGGTTTAAG+AGG | + | chr4.4:19315027-19315046 | None:intergenic | 35.0% |
| ! | TTTCCTCATCAGCTTTATCT+AGG | - | chr4.4:19315369-19315388 | MS.gene35156:intron | 35.0% |
| !! | AATAGGATATGAAAGCACTG+TGG | - | chr4.4:19316350-19316369 | MS.gene35156:intron | 35.0% |
| !! | AGATCTAGCTCTACAATGAA+AGG | + | chr4.4:19316681-19316700 | None:intergenic | 35.0% |
| !! | CTTTGTGTTGATGCAACTTT+TGG | - | chr4.4:19315134-19315153 | MS.gene35156:intron | 35.0% |
| !!! | GGATCAAACTGTTTCTGTTT+TGG | - | chr4.4:19315110-19315129 | MS.gene35156:intron | 35.0% |
| AAAGATAATTGGGACTCGAG+TGG | - | chr4.4:19316217-19316236 | MS.gene35156:intron | 40.0% | |
| ACAAAAGATGCCATCACTTG+AGG | - | chr4.4:19314840-19314859 | MS.gene35156:intron | 40.0% | |
| ACACCTAGATAAAGCTGATG+AGG | + | chr4.4:19315375-19315394 | None:intergenic | 40.0% | |
| AGGCAAAACAGAATAGCTAC+GGG | + | chr4.4:19315924-19315943 | None:intergenic | 40.0% | |
| ATGGTAGGTATACACGAGAA+GGG | - | chr4.4:19316539-19316558 | MS.gene35156:intron | 40.0% | |
| ATGTTGATCCCTGTTGACAT+GGG | + | chr4.4:19316874-19316893 | None:intergenic | 40.0% | |
| ATTGGATCACCTGTGTCATA+AGG | + | chr4.4:19316489-19316508 | None:intergenic | 40.0% | |
| CAACTTGACTGCAACAAGTT+TGG | + | chr4.4:19315711-19315730 | None:intergenic | 40.0% | |
| CCAAACTACACTACTTCAGA+TGG | - | chr4.4:19316041-19316060 | MS.gene35156:intron | 40.0% | |
| CGAATACAATGAACACTGAC+CGG | - | chr4.4:19317270-19317289 | MS.gene35156:intron | 40.0% | |
| CTACACTACTTCAGATGGAT+CGG | - | chr4.4:19316046-19316065 | MS.gene35156:intron | 40.0% | |
| CTACGGGAGAGACTAAAATT+GGG | + | chr4.4:19315908-19315927 | None:intergenic | 40.0% | |
| CTTAGAAGCTGTTGTTACCA+TGG | - | chr4.4:19315311-19315330 | MS.gene35156:intron | 40.0% | |
| GAGAGAATATCTCTCTGGTT+AGG | - | chr4.4:19316630-19316649 | MS.gene35156:intron | 40.0% | |
| GAGTTCTGTTTGTACAGATG+GGG | - | chr4.4:19315439-19315458 | MS.gene35156:intron | 40.0% | |
| GATAGGAGAGAATATCTCTC+TGG | - | chr4.4:19316625-19316644 | MS.gene35156:intron | 40.0% | |
| GATGATATGGAATTCCAGAC+TGG | - | chr4.4:19316011-19316030 | MS.gene35156:intron | 40.0% | |
| GGCTTTCAACTATTACACAG+TGG | - | chr4.4:19315156-19315175 | MS.gene35156:intron | 40.0% | |
| GGTAAAGGGATAATTCGTGA+TGG | - | chr4.4:19315222-19315241 | MS.gene35156:intron | 40.0% | |
| GTATTCGTGTTATAGCCCTA+AGG | + | chr4.4:19317257-19317276 | None:intergenic | 40.0% | |
| GTGTATACCTACCATGTAGT+GGG | + | chr4.4:19316534-19316553 | None:intergenic | 40.0% | |
| GTTGCATTGCTCATAACTGT+CGG | - | chr4.4:19316727-19316746 | MS.gene35156:intron | 40.0% | |
| TAAGTTCATGGTAGGACCTT+GGG | - | chr4.4:19316463-19316482 | MS.gene35156:intron | 40.0% | |
| TGAGGAAAATGTAGAGACAG+AGG | + | chr4.4:19315357-19315376 | None:intergenic | 40.0% | |
| TGTGTCGAATGTCGATAAAG+TGG | - | chr4.4:19315405-19315424 | MS.gene35156:intron | 40.0% | |
| TGTTGTTACCATGGTGAACA+AGG | - | chr4.4:19315320-19315339 | MS.gene35156:intron | 40.0% | |
| TTAAGTTCATGGTAGGACCT+TGG | - | chr4.4:19316462-19316481 | MS.gene35156:intron | 40.0% | |
| ! | CCATCTGAAGTAGTGTAGTT+TGG | + | chr4.4:19316044-19316063 | None:intergenic | 40.0% |
| ! | GTCTGGAATTCCATATCATC+TGG | + | chr4.4:19316011-19316030 | None:intergenic | 40.0% |
| AAAACGGTAACTAGGCTGCT+AGG | + | chr4.4:19317136-19317155 | None:intergenic | 45.0% | |
| CATGGTAGGTATACACGAGA+AGG | - | chr4.4:19316538-19316557 | MS.gene35156:intron | 45.0% | |
| CATGTCAACAGGGATCAACA+TGG | - | chr4.4:19316873-19316892 | MS.gene35156:CDS | 45.0% | |
| CATGTTGATCCCTGTTGACA+TGG | + | chr4.4:19316875-19316894 | None:intergenic | 45.0% | |
| CCTATGCAGAACTGCAAAAG+AGG | + | chr4.4:19317420-19317439 | None:intergenic | 45.0% | |
| CGTGTATACCTACCATGTAG+TGG | + | chr4.4:19316535-19316554 | None:intergenic | 45.0% | |
| CTATTACACAGTGGTCGACA+TGG | - | chr4.4:19315165-19315184 | MS.gene35156:intron | 45.0% | |
| GAATAGACCCACTACATGGT+AGG | - | chr4.4:19316524-19316543 | MS.gene35156:intron | 45.0% | |
| GAGAAACTGAAGAGTTGCAC+CGG | + | chr4.4:19317292-19317311 | None:intergenic | 45.0% | |
| GCTACGGGAGAGACTAAAAT+TGG | + | chr4.4:19315909-19315928 | None:intergenic | 45.0% | |
| GGGTTTAAGAGGTCTGTTAC+AGG | + | chr4.4:19315016-19315035 | None:intergenic | 45.0% | |
| TCCAACAACCCATGTCAACA+GGG | - | chr4.4:19316863-19316882 | MS.gene35156:CDS | 45.0% | |
| TGCACAAACCTTGTTCACCA+TGG | + | chr4.4:19315331-19315350 | None:intergenic | 45.0% | |
| TGGTAGGTATACACGAGAAG+GGG | - | chr4.4:19316540-19316559 | MS.gene35156:intron | 45.0% | |
| TTCCAACAACCCATGTCAAC+AGG | - | chr4.4:19316862-19316881 | MS.gene35156:CDS | 45.0% | |
| ! | CCTCTTTTGCAGTTCTGCAT+AGG | - | chr4.4:19317417-19317436 | MS.gene35156:CDS | 45.0% |
| ! | GTGACGGGAATTGAGAACAT+TGG | - | chr4.4:19315201-19315220 | MS.gene35156:intron | 45.0% |
| ! | GTTGACATGGGTTGTTGGAA+TGG | + | chr4.4:19316862-19316881 | None:intergenic | 45.0% |
| !!! | ATGGGGTTTTTTGCTGAAGC+TGG | - | chr4.4:19315456-19315475 | MS.gene35156:intron | 45.0% |
| AGGTTACGACCAAAGTAGCG+TGG | + | chr4.4:19314718-19314737 | None:intergenic | 50.0% | |
| AGTTTGGCATGTCTCCAGTC+TGG | + | chr4.4:19316028-19316047 | None:intergenic | 50.0% | |
| ATACACGAGAAGGGGAAGAC+TGG | - | chr4.4:19316548-19316567 | MS.gene35156:intron | 50.0% | |
| CAACTGCATCCACGCTACTT+TGG | - | chr4.4:19314706-19314725 | MS.gene35156:CDS | 50.0% | |
| CAGTGGTCGACATGGATTTG+TGG | - | chr4.4:19315173-19315192 | MS.gene35156:intron | 50.0% | |
| TCGACATGGATTTGTGGTGG+CGG | - | chr4.4:19315179-19315198 | MS.gene35156:intron | 50.0% | |
| TGGTCGACATGGATTTGTGG+TGG | - | chr4.4:19315176-19315195 | MS.gene35156:intron | 50.0% | |
| TGTTTCGCTCCAGCACTATG+TGG | + | chr4.4:19314684-19314703 | None:intergenic | 50.0% | |
| ! | AAGGGGAAGACTGGTGTTAG+TGG | - | chr4.4:19316557-19316576 | MS.gene35156:intron | 50.0% |
| ! | AGGGGAAGACTGGTGTTAGT+GGG | - | chr4.4:19316558-19316577 | MS.gene35156:intron | 50.0% |
| ! | GGGATAATTCGTGATGGGAC+CGG | - | chr4.4:19315228-19315247 | MS.gene35156:intron | 50.0% |
| ! | TCCCTGTTGACATGGGTTGT+TGG | + | chr4.4:19316867-19316886 | None:intergenic | 50.0% |
| !! | GTCTAGGTGTGAGGGTATTC+AGG | - | chr4.4:19316585-19316604 | MS.gene35156:intron | 50.0% |
| !! | TGGTTAGGAGTCACTGACTC+TGG | - | chr4.4:19316645-19316664 | MS.gene35156:intron | 50.0% |
| ATAGCCCTAAGGGCGAGTGA+GGG | + | chr4.4:19317246-19317265 | None:intergenic | 55.0% | |
| ATTCCCCTCACTCGCCCTTA+GGG | - | chr4.4:19317239-19317258 | MS.gene35156:intron | 55.0% | |
| CACCTGTGTCATAAGGCCCA+AGG | + | chr4.4:19316482-19316501 | None:intergenic | 55.0% | |
| GGTGTTAGTGGGGAGAGTCT+AGG | - | chr4.4:19316569-19316588 | MS.gene35156:intron | 55.0% | |
| TATAGCCCTAAGGGCGAGTG+AGG | + | chr4.4:19317247-19317266 | None:intergenic | 55.0% | |
| TGGGGAGAGTCTAGGTGTGA+GGG | - | chr4.4:19316577-19316596 | MS.gene35156:intron | 55.0% | |
| ! | GACCTTGGGCCTTATGACAC+AGG | - | chr4.4:19316477-19316496 | MS.gene35156:intron | 55.0% |
| ! | GGGGAAGACTGGTGTTAGTG+GGG | - | chr4.4:19316559-19316578 | MS.gene35156:intron | 55.0% |
| !! | AAGACGTCGAAGGCACTTGC+AGG | - | chr4.4:19314767-19314786 | MS.gene35156:intron | 55.0% |
| !! | TGGATTTGTGGTGGCGGTGA+CGG | - | chr4.4:19315185-19315204 | MS.gene35156:intron | 55.0% |
| CATTCCCCTCACTCGCCCTT+AGG | - | chr4.4:19317238-19317257 | MS.gene35156:intron | 60.0% | |
| GTGGGGAGAGTCTAGGTGTG+AGG | - | chr4.4:19316576-19316595 | MS.gene35156:intron | 60.0% | |
| TAGCCCTAAGGGCGAGTGAG+GGG | + | chr4.4:19317245-19317264 | None:intergenic | 60.0% | |
| !! | GGATTTGTGGTGGCGGTGAC+GGG | - | chr4.4:19315186-19315205 | MS.gene35156:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19314673 | 19317491 | 19314673 | ID=MS.gene35156 |
| chr4.4 | mRNA | 19314673 | 19317491 | 19314673 | ID=MS.gene35156.t1;Parent=MS.gene35156 |
| chr4.4 | exon | 19317376 | 19317491 | 19317376 | ID=MS.gene35156.t1.exon1;Parent=MS.gene35156.t1 |
| chr4.4 | CDS | 19317376 | 19317491 | 19317376 | ID=cds.MS.gene35156.t1;Parent=MS.gene35156.t1 |
| chr4.4 | exon | 19316823 | 19316988 | 19316823 | ID=MS.gene35156.t1.exon2;Parent=MS.gene35156.t1 |
| chr4.4 | CDS | 19316823 | 19316988 | 19316823 | ID=cds.MS.gene35156.t1;Parent=MS.gene35156.t1 |
| chr4.4 | exon | 19316658 | 19316708 | 19316658 | ID=MS.gene35156.t1.exon3;Parent=MS.gene35156.t1 |
| chr4.4 | CDS | 19316658 | 19316708 | 19316658 | ID=cds.MS.gene35156.t1;Parent=MS.gene35156.t1 |
| chr4.4 | exon | 19316097 | 19316162 | 19316097 | ID=MS.gene35156.t1.exon4;Parent=MS.gene35156.t1 |
| chr4.4 | CDS | 19316097 | 19316162 | 19316097 | ID=cds.MS.gene35156.t1;Parent=MS.gene35156.t1 |
| chr4.4 | exon | 19315911 | 19315979 | 19315911 | ID=MS.gene35156.t1.exon5;Parent=MS.gene35156.t1 |
| chr4.4 | CDS | 19315911 | 19315979 | 19315911 | ID=cds.MS.gene35156.t1;Parent=MS.gene35156.t1 |
| chr4.4 | exon | 19314673 | 19314735 | 19314673 | ID=MS.gene35156.t1.exon6;Parent=MS.gene35156.t1 |
| chr4.4 | CDS | 19314673 | 19314735 | 19314673 | ID=cds.MS.gene35156.t1;Parent=MS.gene35156.t1 |
| Gene Sequence |
| Protein sequence |
