Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023153.t1 | XP_003608502.1 | 100 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 5.70E-96 | 360.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023153.t1 | P46279 | 98.9 | 176 | 2 | 0 | 1 | 176 | 1 | 176 | 6.8e-98 | 357.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023153.t1 | B7FHG8 | 100.0 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 4.1e-96 | 360.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023153 | MS.gene020134 | PPI |
| MS.gene92338 | MS.gene023153 | PPI |
| MS.gene023153 | MS.gene046919 | PPI |
| MS.gene015218 | MS.gene023153 | PPI |
| MS.gene20260 | MS.gene023153 | PPI |
| MS.gene023153 | MS.gene072357 | PPI |
| MS.gene92623 | MS.gene023153 | PPI |
| MS.gene38651 | MS.gene023153 | PPI |
| MS.gene023153 | MS.gene015219 | PPI |
| MS.gene014162 | MS.gene023153 | PPI |
| MS.gene09560 | MS.gene023153 | PPI |
| MS.gene023153 | MS.gene021324 | PPI |
| MS.gene57185 | MS.gene023153 | PPI |
| MS.gene023153 | MS.gene34548 | PPI |
| MS.gene37049 | MS.gene023153 | PPI |
| MS.gene023153 | MS.gene017939 | PPI |
| MS.gene023153 | MS.gene04856 | PPI |
| MS.gene57186 | MS.gene023153 | PPI |
| MS.gene023153 | MS.gene20258 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023153.t1 | MTR_4g096810 | 100.000 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 4.65e-129 | 359 |
| MS.gene023153.t1 | MTR_1g475140 | 34.615 | 156 | 96 | 6 | 22 | 173 | 30 | 183 | 8.15e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023153.t1 | AT5G59180 | 91.429 | 175 | 15 | 0 | 1 | 175 | 1 | 175 | 5.84e-120 | 336 |
| MS.gene023153.t1 | AT4G14660 | 32.680 | 153 | 98 | 4 | 23 | 172 | 27 | 177 | 1.20e-17 | 76.6 |
| MS.gene023153.t1 | AT4G14660 | 32.680 | 153 | 98 | 4 | 23 | 172 | 27 | 177 | 1.20e-17 | 76.6 |
| MS.gene023153.t1 | AT4G14660 | 32.680 | 153 | 98 | 4 | 23 | 172 | 27 | 177 | 1.20e-17 | 76.6 |
| MS.gene023153.t1 | AT3G22900 | 31.373 | 153 | 101 | 3 | 19 | 168 | 21 | 172 | 2.03e-16 | 73.2 |
| MS.gene023153.t1 | AT3G22900 | 31.373 | 153 | 101 | 3 | 19 | 168 | 21 | 172 | 2.03e-16 | 73.2 |
Find 45 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACATCTTTCATTAGTT+TGG | 0.198492 | 4.3:+18875902 | None:intergenic |
| GAAGTGAGGCTAAAGATAAT+TGG | 0.250831 | 4.3:-18874450 | MS.gene023153:CDS |
| ACCCAAGAAATCGTCTTTAA+TGG | 0.252979 | 4.3:+18873167 | None:intergenic |
| TCTAAGATCTCTCCCTTAAA+TGG | 0.305785 | 4.3:+18875362 | None:intergenic |
| TCAGTTGATTCCGGATGATA+TGG | 0.308719 | 4.3:-18874658 | MS.gene023153:intron |
| ACAACACATTGATACTTAAC+TGG | 0.334226 | 4.3:+18875392 | None:intergenic |
| TTTCTCCTTTCAGTTGATTC+CGG | 0.335903 | 4.3:-18874667 | MS.gene023153:intron |
| AGGTGAATTTAAACTGTTGC+AGG | 0.336659 | 4.3:+18873132 | None:intergenic |
| TACCATTAAAGACGATTTCT+TGG | 0.338650 | 4.3:-18873169 | MS.gene023153:CDS |
| TGTTTCGCTCCAGCACTATA+TGG | 0.357275 | 4.3:+18875976 | None:intergenic |
| CCATCTGAAGTAGTGTAGTT+TGG | 0.431946 | 4.3:+18874615 | None:intergenic |
| AAGTGAGGCTAAAGATAATT+GGG | 0.441196 | 4.3:-18874449 | MS.gene023153:CDS |
| TATAAATAAACTTACATGGT+TGG | 0.447507 | 4.3:+18875157 | None:intergenic |
| CAACTGCATCCACGCTACTT+TGG | 0.456540 | 4.3:-18875951 | MS.gene023153:CDS |
| ACCATTAAAGACGATTTCTT+GGG | 0.460088 | 4.3:-18873168 | MS.gene023153:CDS |
| GGATTTGTGGTGGCGGTGAC+GGG | 0.462372 | 4.3:-18875470 | MS.gene023153:CDS |
| AAGATGTTGAAGGCACTTGC+AGG | 0.468765 | 4.3:-18875890 | MS.gene023153:intron |
| TGGATTTGTGGTGGCGGTGA+CGG | 0.486501 | 4.3:-18875471 | MS.gene023153:CDS |
| AGTTTGGCATGTCTCCAGTC+TGG | 0.489328 | 4.3:+18874631 | None:intergenic |
| GTCTGGAATTCCATATCATC+CGG | 0.502025 | 4.3:+18874648 | None:intergenic |
| TTGGAAACGAAGATTTGAAC+TGG | 0.502780 | 4.3:+18875176 | None:intergenic |
| AACTGGAAATGTCACAAATC+CGG | 0.505554 | 4.3:+18875409 | None:intergenic |
| GGAATTGAGAACATTGGTAA+AGG | 0.511677 | 4.3:-18875449 | MS.gene023153:CDS |
| GGGATAATTCGTGATGGGAC+CGG | 0.514333 | 4.3:-18875428 | MS.gene023153:CDS |
| GAATTGAGAACATTGGTAAA+GGG | 0.515497 | 4.3:-18875448 | MS.gene023153:CDS |
| AAACTAATGAAAGATGTTGA+AGG | 0.515705 | 4.3:-18875900 | MS.gene023153:CDS |
| CCAAACTACACTACTTCAGA+TGG | 0.523620 | 4.3:-18874615 | MS.gene023153:CDS |
| CTATTACACAGTGGTCGACA+TGG | 0.559149 | 4.3:-18875491 | MS.gene023153:intron |
| TGTTGTTACCATGGTGAACA+AGG | 0.559537 | 4.3:-18875336 | MS.gene023153:intron |
| CTACACTACTTCAGATGGAT+CGG | 0.562802 | 4.3:-18874610 | MS.gene023153:intron |
| CAGTGGTCGACATGGATTTG+TGG | 0.563376 | 4.3:-18875483 | MS.gene023153:CDS |
| GGTGAATTTAAACTGTTGCA+GGG | 0.565464 | 4.3:+18873133 | None:intergenic |
| CTTAGAAGCTGTTGTTACCA+TGG | 0.567172 | 4.3:-18875345 | MS.gene023153:CDS |
| TTTACAGGTTAAGATTCAGA+AGG | 0.579246 | 4.3:-18874478 | MS.gene023153:intron |
| GGTAAAGGGATAATTCGTGA+TGG | 0.598133 | 4.3:-18875434 | MS.gene023153:CDS |
| GTAAAGGGATAATTCGTGAT+GGG | 0.604324 | 4.3:-18875433 | MS.gene023153:CDS |
| GATGATATGGAATTCCAGAC+TGG | 0.604450 | 4.3:-18874645 | MS.gene023153:CDS |
| AAAGATAATTGGGACTCGAG+TGG | 0.614804 | 4.3:-18874439 | MS.gene023153:CDS |
| TCGACATGGATTTGTGGTGG+CGG | 0.622425 | 4.3:-18875477 | MS.gene023153:CDS |
| TGGAAACAAGATTATCACGA+AGG | 0.623150 | 4.3:+18875922 | None:intergenic |
| TGCACAAACCTTGTTCACCA+TGG | 0.635657 | 4.3:+18875328 | None:intergenic |
| GTGACGGGAATTGAGAACAT+TGG | 0.640814 | 4.3:-18875455 | MS.gene023153:CDS |
| TTCAGAAGGATAGTGAAGTG+AGG | 0.661943 | 4.3:-18874464 | MS.gene023153:CDS |
| AGGTTACGACCAAAGTAGCG+TGG | 0.680189 | 4.3:+18875942 | None:intergenic |
| TGGTCGACATGGATTTGTGG+TGG | 0.690678 | 4.3:-18875480 | MS.gene023153:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTATCATAAACTA+AGG | + | chr4.3:18874909-18874928 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTTTAAGTTCA+TGG | - | chr4.3:18874919-18874938 | MS.gene023153:intron | 10.0% |
| !! | AAGTTTAATTACTAGAATTA+TGG | + | chr4.3:18873285-18873304 | None:intergenic | 15.0% |
| !! | AGTTTAATTACTAGAATTAT+GGG | + | chr4.3:18873284-18873303 | None:intergenic | 15.0% |
| !! | TAATTCTAGTAATTAAACTT+AGG | - | chr4.3:18873285-18873304 | MS.gene023153:intron | 15.0% |
| !!! | ATAATTTAGAATAAAACTGA+TGG | + | chr4.3:18874778-18874797 | None:intergenic | 15.0% |
| !!! | GTTTTATAAATAAACTTACA+TGG | + | chr4.3:18873974-18873993 | None:intergenic | 15.0% |
| !!! | TAACTATTTATCATGTTTTA+TGG | - | chr4.3:18875865-18875884 | MS.gene023153:intron | 15.0% |
| !!! | TAATTTAGAATAAAACTGAT+GGG | + | chr4.3:18874777-18874796 | None:intergenic | 15.0% |
| !!! | TTCATATTTGCTTTTATAAT+TGG | + | chr4.3:18874975-18874994 | None:intergenic | 15.0% |
| !!! | TTTCTTTTCAATTTTGTTTT+TGG | - | chr4.3:18873382-18873401 | MS.gene023153:intron | 15.0% |
| !! | AACAATAATAACAGTATCTT+AGG | + | chr4.3:18874016-18874035 | None:intergenic | 20.0% |
| !! | AACATTATCTAATGCTAAAA+CGG | + | chr4.3:18875667-18875686 | None:intergenic | 20.0% |
| !! | AGTTAATTAAAACATCTTAC+AGG | + | chr4.3:18875614-18875633 | None:intergenic | 20.0% |
| !! | AGTTATATACAAAAGATCAA+AGG | + | chr4.3:18875850-18875869 | None:intergenic | 20.0% |
| !! | ATAAAAGATTAACCTATACT+TGG | + | chr4.3:18875381-18875400 | None:intergenic | 20.0% |
| !! | ATTTGTACATATCATAAAAG+TGG | - | chr4.3:18875258-18875277 | MS.gene023153:intron | 20.0% |
| !! | GAAATAAACCTGTAATAATT+TGG | - | chr4.3:18873557-18873576 | MS.gene023153:intron | 20.0% |
| !! | TATAAATAAACTTACATGGT+TGG | + | chr4.3:18873970-18873989 | None:intergenic | 20.0% |
| !! | TATTATAGACATTGTTAGTT+TGG | + | chr4.3:18873505-18873524 | None:intergenic | 20.0% |
| !! | TGATTCTCATTAAGAAATAT+TGG | + | chr4.3:18875699-18875718 | None:intergenic | 20.0% |
| !! | TTTAAGAGATTCGAATTAAT+AGG | - | chr4.3:18874801-18874820 | MS.gene023153:intron | 20.0% |
| !!! | AAATGAGAATCATGATTTTA+AGG | + | chr4.3:18874051-18874070 | None:intergenic | 20.0% |
| !!! | ATTATAGACATTGTTAGTTT+GGG | + | chr4.3:18873504-18873523 | None:intergenic | 20.0% |
| !!! | ATTTGTCATATTGACTATAT+GGG | - | chr4.3:18874255-18874274 | MS.gene023153:intron | 20.0% |
| !!! | GTTAATCTTTTATCACTTTT+GGG | - | chr4.3:18875388-18875407 | MS.gene023153:CDS | 20.0% |
| !!! | TAATAAAACATTTTGTGTCT+TGG | - | chr4.3:18873520-18873539 | MS.gene023153:intron | 20.0% |
| !!! | TTAATCTTTTATCACTTTTG+GGG | - | chr4.3:18875389-18875408 | MS.gene023153:CDS | 20.0% |
| !!! | TTGATTGTTTGTTTTTTTAC+AGG | - | chr4.3:18874631-18874650 | MS.gene023153:CDS | 20.0% |
| !!! | TTTATTTTTAAGTTCATGGT+AGG | - | chr4.3:18874923-18874942 | MS.gene023153:intron | 20.0% |
| ! | AAACTAATGAAAGATGTTGA+AGG | - | chr4.3:18873224-18873243 | MS.gene023153:intron | 25.0% |
| ! | AAGAAAGAATAACTTAAGAC+AGG | + | chr4.3:18874107-18874126 | None:intergenic | 25.0% |
| ! | ACAGTGCATTATTTCATTAA+AGG | + | chr4.3:18875177-18875196 | None:intergenic | 25.0% |
| ! | AGTTTGATCCAAATTATTAC+AGG | + | chr4.3:18873568-18873587 | None:intergenic | 25.0% |
| ! | ATAATAATTTCTCGTTGAAG+AGG | - | chr4.3:18874549-18874568 | MS.gene023153:intron | 25.0% |
| ! | ATTTATGTACTTGAGATTAG+AGG | - | chr4.3:18874067-18874086 | MS.gene023153:intron | 25.0% |
| ! | TTCAACATCTTTCATTAGTT+TGG | + | chr4.3:18873225-18873244 | None:intergenic | 25.0% |
| !! | AATGTGTTTTCTTCTGTTTT+TGG | - | chr4.3:18874606-18874625 | MS.gene023153:intron | 25.0% |
| !! | CATTTGTCATATTGACTATA+TGG | - | chr4.3:18874254-18874273 | MS.gene023153:intron | 25.0% |
| !! | GGTTAATCTTTTATCACTTT+TGG | - | chr4.3:18875387-18875406 | MS.gene023153:CDS | 25.0% |
| !! | TTATAGACATTGTTAGTTTG+GGG | + | chr4.3:18873503-18873522 | None:intergenic | 25.0% |
| !!! | AGAGAGCAATTTGTTTTTTT+AGG | - | chr4.3:18874573-18874592 | MS.gene023153:intron | 25.0% |
| AAGTGAGGCTAAAGATAATT+GGG | - | chr4.3:18874675-18874694 | MS.gene023153:intron | 30.0% | |
| AATGAAAAAACCTCAAGTGA+TGG | + | chr4.3:18873320-18873339 | None:intergenic | 30.0% | |
| ACAACACATTGATACTTAAC+TGG | + | chr4.3:18873735-18873754 | None:intergenic | 30.0% | |
| ACATGAGGAAATAGTAACAA+AGG | + | chr4.3:18874412-18874431 | None:intergenic | 30.0% | |
| ACCATTAAAGACGATTTCTT+GGG | - | chr4.3:18875956-18875975 | MS.gene023153:CDS | 30.0% | |
| ACTGAAAGCTGCAATATATA+TGG | + | chr4.3:18874731-18874750 | None:intergenic | 30.0% | |
| ACTTATGTTCTTCTGAATGA+TGG | - | chr4.3:18874206-18874225 | MS.gene023153:intron | 30.0% | |
| AGAAGTAACATCAACAAAGT+AGG | + | chr4.3:18875560-18875579 | None:intergenic | 30.0% | |
| AGTAAAGTAAAATTGCAGCA+TGG | + | chr4.3:18875443-18875462 | None:intergenic | 30.0% | |
| AGTGAGGAGAATGAAAAAAT+AGG | + | chr4.3:18875746-18875765 | None:intergenic | 30.0% | |
| ATCTTAGGTATAAGTGCAAA+AGG | + | chr4.3:18874001-18874020 | None:intergenic | 30.0% | |
| CAACTGAAAGGAGAAAAAAA+GGG | + | chr4.3:18874453-18874472 | None:intergenic | 30.0% | |
| CAAGAAACAAAAGCTATATC+TGG | + | chr4.3:18874850-18874869 | None:intergenic | 30.0% | |
| CTGAAAGCTGCAATATATAT+GGG | + | chr4.3:18874730-18874749 | None:intergenic | 30.0% | |
| GAATTGAGAACATTGGTAAA+GGG | - | chr4.3:18873676-18873695 | MS.gene023153:intron | 30.0% | |
| GATCAAGACAAAAATACATG+AGG | + | chr4.3:18874427-18874446 | None:intergenic | 30.0% | |
| GATCACTATCTGTATGAAAA+TGG | - | chr4.3:18874290-18874309 | MS.gene023153:intron | 30.0% | |
| GTGATAAAAGATTAACCAAG+TGG | + | chr4.3:18875308-18875327 | None:intergenic | 30.0% | |
| TACCATTAAAGACGATTTCT+TGG | - | chr4.3:18875955-18875974 | MS.gene023153:CDS | 30.0% | |
| TCAACTGAAAGGAGAAAAAA+AGG | + | chr4.3:18874454-18874473 | None:intergenic | 30.0% | |
| TTCTTGCAAGGTTTGAAAAA+AGG | - | chr4.3:18874324-18874343 | MS.gene023153:intron | 30.0% | |
| TTTACAGGTTAAGATTCAGA+AGG | - | chr4.3:18874646-18874665 | MS.gene023153:CDS | 30.0% | |
| ! | TGTCTTGGACTAATTTTGTT+TGG | - | chr4.3:18873535-18873554 | MS.gene023153:intron | 30.0% |
| ! | TTTTGAACGTTACTTGAAGA+TGG | - | chr4.3:18873441-18873460 | MS.gene023153:intron | 30.0% |
| !! | ATATAGCTTTTGTTTCTTGC+AGG | - | chr4.3:18874851-18874870 | MS.gene023153:intron | 30.0% |
| !! | ATTGTGATATTGAGTTGGAT+AGG | - | chr4.3:18875076-18875095 | MS.gene023153:intron | 30.0% |
| !! | GTTGTTTTCAGACCATTTAA+GGG | - | chr4.3:18873750-18873769 | MS.gene023153:intron | 30.0% |
| !! | TAATTAACTTGTGATAGCGA+TGG | - | chr4.3:18875625-18875644 | MS.gene023153:intron | 30.0% |
| !! | TTTGTGTTGATGCAACTTTT+GGG | - | chr4.3:18873603-18873622 | MS.gene023153:intron | 30.0% |
| !!! | GTTTTCATTGATTTCTTGCA+AGG | - | chr4.3:18874312-18874331 | MS.gene023153:intron | 30.0% |
| !!! | TGTTGTTTTCAGACCATTTA+AGG | - | chr4.3:18873749-18873768 | MS.gene023153:intron | 30.0% |
| AACTGGAAATGTCACAAATC+CGG | + | chr4.3:18873718-18873737 | None:intergenic | 35.0% | |
| AAGGCAAAACAGAATAGCTA+CGG | + | chr4.3:18874393-18874412 | None:intergenic | 35.0% | |
| ACCCAAGAAATCGTCTTTAA+TGG | + | chr4.3:18875960-18875979 | None:intergenic | 35.0% | |
| AGGAGAATAATAACCCTTCT+CGG | + | chr4.3:18875540-18875559 | None:intergenic | 35.0% | |
| ATAAACTAAGGCTGTTCTCT+AGG | + | chr4.3:18874897-18874916 | None:intergenic | 35.0% | |
| ATATGAATAGACCCACTACA+TGG | - | chr4.3:18874988-18875007 | MS.gene023153:intron | 35.0% | |
| CTAATGCTAAAACGGTAACT+AGG | + | chr4.3:18875659-18875678 | None:intergenic | 35.0% | |
| GAAGTGAGGCTAAAGATAAT+TGG | - | chr4.3:18874674-18874693 | MS.gene023153:intron | 35.0% | |
| GGAATTGAGAACATTGGTAA+AGG | - | chr4.3:18873675-18873694 | MS.gene023153:intron | 35.0% | |
| GTAAAGGGATAATTCGTGAT+GGG | - | chr4.3:18873691-18873710 | MS.gene023153:intron | 35.0% | |
| TATCAGTTCATTGCATTCAC+AGG | - | chr4.3:18875222-18875241 | MS.gene023153:intron | 35.0% | |
| TATTCGTGTTATAGCCCTAA+GGG | + | chr4.3:18875771-18875790 | None:intergenic | 35.0% | |
| TCAGGATTGTGATATTGAGT+TGG | - | chr4.3:18875071-18875090 | MS.gene023153:intron | 35.0% | |
| TCTTACAGGATAATCATGCA+AGG | + | chr4.3:18875600-18875619 | None:intergenic | 35.0% | |
| TGAAAGTGACTACCAAGTAT+AGG | - | chr4.3:18875366-18875385 | MS.gene023153:CDS | 35.0% | |
| TGAGTTCTGTTTGTACAGAT+GGG | - | chr4.3:18873906-18873925 | MS.gene023153:intron | 35.0% | |
| TGGAAACAAGATTATCACGA+AGG | + | chr4.3:18873205-18873224 | None:intergenic | 35.0% | |
| TTGAGTTCTGTTTGTACAGA+TGG | - | chr4.3:18873905-18873924 | MS.gene023153:intron | 35.0% | |
| TTGGAAACGAAGATTTGAAC+TGG | + | chr4.3:18873951-18873970 | None:intergenic | 35.0% | |
| ! | TATGCTAGTGTTTTACCACT+TGG | - | chr4.3:18875290-18875309 | MS.gene023153:intron | 35.0% |
| ! | TCTAAGATCTCTCCCTTAAA+TGG | + | chr4.3:18873765-18873784 | None:intergenic | 35.0% |
| ! | TTGTTAGTTTGGGGTTTAAG+AGG | + | chr4.3:18873494-18873513 | None:intergenic | 35.0% |
| ! | TTTCCTCATCAGCTTTATCT+AGG | - | chr4.3:18873837-18873856 | MS.gene023153:intron | 35.0% |
| ! | TTTCTCCTTTCAGTTGATTC+CGG | - | chr4.3:18874457-18874476 | MS.gene023153:CDS | 35.0% |
| !! | AATAGGATATGAAAGCACTG+TGG | - | chr4.3:18874818-18874837 | MS.gene023153:intron | 35.0% |
| !! | AGATCTAGCTCTACAATGAA+AGG | + | chr4.3:18875149-18875168 | None:intergenic | 35.0% |
| !! | CTTTGTGTTGATGCAACTTT+TGG | - | chr4.3:18873602-18873621 | MS.gene023153:intron | 35.0% |
| !! | GGATCAAACTGTTTCTGTTT+CGG | - | chr4.3:18873578-18873597 | MS.gene023153:intron | 35.0% |
| AAAGATAATTGGGACTCGAG+TGG | - | chr4.3:18874685-18874704 | MS.gene023153:intron | 40.0% | |
| ACACCTAGATAAAGCTGATG+AGG | + | chr4.3:18873843-18873862 | None:intergenic | 40.0% | |
| AGGCAAAACAGAATAGCTAC+GGG | + | chr4.3:18874392-18874411 | None:intergenic | 40.0% | |
| ATCATCCGGAATCAACTGAA+AGG | + | chr4.3:18874465-18874484 | None:intergenic | 40.0% | |
| ATGGTAGGTATACACGAGAA+GGG | - | chr4.3:18875007-18875026 | MS.gene023153:intron | 40.0% | |
| ATGTTGATCCCTGTTGACAT+GGG | + | chr4.3:18875342-18875361 | None:intergenic | 40.0% | |
| ATTGGATCACCTGTGTCATA+AGG | + | chr4.3:18874957-18874976 | None:intergenic | 40.0% | |
| CAACTTGACTGCAACAAGTT+TGG | + | chr4.3:18874179-18874198 | None:intergenic | 40.0% | |
| CCAAACTACACTACTTCAGA+TGG | - | chr4.3:18874509-18874528 | MS.gene023153:intron | 40.0% | |
| CGAATACAATGAACACTGAC+CGG | - | chr4.3:18875785-18875804 | MS.gene023153:intron | 40.0% | |
| CTACACTACTTCAGATGGAT+CGG | - | chr4.3:18874514-18874533 | MS.gene023153:intron | 40.0% | |
| CTACGGGAGAGACTAAAATT+GGG | + | chr4.3:18874376-18874395 | None:intergenic | 40.0% | |
| CTTAGAAGCTGTTGTTACCA+TGG | - | chr4.3:18873779-18873798 | MS.gene023153:intron | 40.0% | |
| GACAAAAATGCCATCACTTG+AGG | - | chr4.3:18873307-18873326 | MS.gene023153:intron | 40.0% | |
| GAGAGAATATCTCTCTGGTT+AGG | - | chr4.3:18875098-18875117 | MS.gene023153:intron | 40.0% | |
| GAGTTCTGTTTGTACAGATG+GGG | - | chr4.3:18873907-18873926 | MS.gene023153:intron | 40.0% | |
| GATAGGAGAGAATATCTCTC+TGG | - | chr4.3:18875093-18875112 | MS.gene023153:intron | 40.0% | |
| GATGATATGGAATTCCAGAC+TGG | - | chr4.3:18874479-18874498 | MS.gene023153:intron | 40.0% | |
| GGCTTTCAACTATTACACAG+TGG | - | chr4.3:18873624-18873643 | MS.gene023153:intron | 40.0% | |
| GGTAAAGGGATAATTCGTGA+TGG | - | chr4.3:18873690-18873709 | MS.gene023153:intron | 40.0% | |
| GTATTCGTGTTATAGCCCTA+AGG | + | chr4.3:18875772-18875791 | None:intergenic | 40.0% | |
| GTGTATACCTACCATGTAGT+GGG | + | chr4.3:18875002-18875021 | None:intergenic | 40.0% | |
| GTTGCATTGCTCATAACTGT+CGG | - | chr4.3:18875195-18875214 | MS.gene023153:CDS | 40.0% | |
| TAAGTTCATGGTAGGACCTT+GGG | - | chr4.3:18874931-18874950 | MS.gene023153:intron | 40.0% | |
| TGAGGAAAATGTAGAGACAG+AGG | + | chr4.3:18873825-18873844 | None:intergenic | 40.0% | |
| TGTGTCGAATGTCGATAAAG+TGG | - | chr4.3:18873873-18873892 | MS.gene023153:intron | 40.0% | |
| TGTTGTTACCATGGTGAACA+AGG | - | chr4.3:18873788-18873807 | MS.gene023153:intron | 40.0% | |
| TTAAGTTCATGGTAGGACCT+TGG | - | chr4.3:18874930-18874949 | MS.gene023153:intron | 40.0% | |
| TTCAGAAGGATAGTGAAGTG+AGG | - | chr4.3:18874660-18874679 | MS.gene023153:intron | 40.0% | |
| ! | AGTTACTTTATGCACCGAGA+AGG | - | chr4.3:18875523-18875542 | MS.gene023153:intron | 40.0% |
| ! | CCATCTGAAGTAGTGTAGTT+TGG | + | chr4.3:18874512-18874531 | None:intergenic | 40.0% |
| ! | GTCTGGAATTCCATATCATC+CGG | + | chr4.3:18874479-18874498 | None:intergenic | 40.0% |
| ! | GTTACTTTATGCACCGAGAA+GGG | - | chr4.3:18875524-18875543 | MS.gene023153:intron | 40.0% |
| ! | TCAGTTGATTCCGGATGATA+TGG | - | chr4.3:18874466-18874485 | MS.gene023153:CDS | 40.0% |
| ! | TTCTCGGTGCATAAAGTAAC+TGG | + | chr4.3:18875524-18875543 | None:intergenic | 40.0% |
| AAAACGGTAACTAGGCTGCT+AGG | + | chr4.3:18875651-18875670 | None:intergenic | 45.0% | |
| CATGGTAGGTATACACGAGA+AGG | - | chr4.3:18875006-18875025 | MS.gene023153:intron | 45.0% | |
| CATGTCAACAGGGATCAACA+TGG | - | chr4.3:18875341-18875360 | MS.gene023153:CDS | 45.0% | |
| CATGTTGATCCCTGTTGACA+TGG | + | chr4.3:18875343-18875362 | None:intergenic | 45.0% | |
| CCTATGCAGAACTGCAAAAG+AGG | + | chr4.3:18875935-18875954 | None:intergenic | 45.0% | |
| CGTGTATACCTACCATGTAG+TGG | + | chr4.3:18875003-18875022 | None:intergenic | 45.0% | |
| CTATTACACAGTGGTCGACA+TGG | - | chr4.3:18873633-18873652 | MS.gene023153:intron | 45.0% | |
| GAATAGACCCACTACATGGT+AGG | - | chr4.3:18874992-18875011 | MS.gene023153:intron | 45.0% | |
| GAGAAACTGAAGAGTTGCAC+CGG | + | chr4.3:18875807-18875826 | None:intergenic | 45.0% | |
| GCTACGGGAGAGACTAAAAT+TGG | + | chr4.3:18874377-18874396 | None:intergenic | 45.0% | |
| GGGTTTAAGAGGTCTGTTAC+AGG | + | chr4.3:18873483-18873502 | None:intergenic | 45.0% | |
| TCCAACAACCCATGTCAACA+GGG | - | chr4.3:18875331-18875350 | MS.gene023153:intron | 45.0% | |
| TGCACAAACCTTGTTCACCA+TGG | + | chr4.3:18873799-18873818 | None:intergenic | 45.0% | |
| TGGTAGGTATACACGAGAAG+GGG | - | chr4.3:18875008-18875027 | MS.gene023153:intron | 45.0% | |
| TGTTTCGCTCCAGCACTATA+TGG | + | chr4.3:18873151-18873170 | None:intergenic | 45.0% | |
| TTCCAACAACCCATGTCAAC+AGG | - | chr4.3:18875330-18875349 | MS.gene023153:intron | 45.0% | |
| ! | CCTCTTTTGCAGTTCTGCAT+AGG | - | chr4.3:18875932-18875951 | MS.gene023153:CDS | 45.0% |
| ! | GTGACGGGAATTGAGAACAT+TGG | - | chr4.3:18873669-18873688 | MS.gene023153:intron | 45.0% |
| ! | GTTGACATGGGTTGTTGGAA+TGG | + | chr4.3:18875330-18875349 | None:intergenic | 45.0% |
| !! | AAGATGTTGAAGGCACTTGC+AGG | - | chr4.3:18873234-18873253 | MS.gene023153:intron | 45.0% |
| !!! | ATGGGGTTTTTTGCTGAAGC+TGG | - | chr4.3:18873924-18873943 | MS.gene023153:intron | 45.0% |
| AGGTTACGACCAAAGTAGCG+TGG | + | chr4.3:18873185-18873204 | None:intergenic | 50.0% | |
| AGTTTGGCATGTCTCCAGTC+TGG | + | chr4.3:18874496-18874515 | None:intergenic | 50.0% | |
| ATACACGAGAAGGGGAAGAC+TGG | - | chr4.3:18875016-18875035 | MS.gene023153:intron | 50.0% | |
| ATTCTCCTCACTCGCCCTTA+GGG | - | chr4.3:18875754-18875773 | MS.gene023153:intron | 50.0% | |
| CAACTGCATCCACGCTACTT+TGG | - | chr4.3:18873173-18873192 | MS.gene023153:CDS | 50.0% | |
| CAGTGGTCGACATGGATTTG+TGG | - | chr4.3:18873641-18873660 | MS.gene023153:intron | 50.0% | |
| TCGACATGGATTTGTGGTGG+CGG | - | chr4.3:18873647-18873666 | MS.gene023153:intron | 50.0% | |
| TGGTCGACATGGATTTGTGG+TGG | - | chr4.3:18873644-18873663 | MS.gene023153:intron | 50.0% | |
| ! | AAGGGGAAGACTGGTGTTAG+TGG | - | chr4.3:18875025-18875044 | MS.gene023153:intron | 50.0% |
| ! | AGGGGAAGACTGGTGTTAGT+GGG | - | chr4.3:18875026-18875045 | MS.gene023153:intron | 50.0% |
| ! | GGGATAATTCGTGATGGGAC+CGG | - | chr4.3:18873696-18873715 | MS.gene023153:intron | 50.0% |
| ! | TCCCTGTTGACATGGGTTGT+TGG | + | chr4.3:18875335-18875354 | None:intergenic | 50.0% |
| !! | GTCTAGGTGTGAGGGTATTC+AGG | - | chr4.3:18875053-18875072 | MS.gene023153:intron | 50.0% |
| !! | TGGTTAGGAGTCACTGACTC+TGG | - | chr4.3:18875113-18875132 | MS.gene023153:intron | 50.0% |
| CACCTGTGTCATAAGGCCCA+AGG | + | chr4.3:18874950-18874969 | None:intergenic | 55.0% | |
| CATTCTCCTCACTCGCCCTT+AGG | - | chr4.3:18875753-18875772 | MS.gene023153:intron | 55.0% | |
| GGTGTTAGTGGGGAGAGTCT+AGG | - | chr4.3:18875037-18875056 | MS.gene023153:intron | 55.0% | |
| TATAGCCCTAAGGGCGAGTG+AGG | + | chr4.3:18875762-18875781 | None:intergenic | 55.0% | |
| TGGGGAGAGTCTAGGTGTGA+GGG | - | chr4.3:18875045-18875064 | MS.gene023153:intron | 55.0% | |
| ! | GACCTTGGGCCTTATGACAC+AGG | - | chr4.3:18874945-18874964 | MS.gene023153:intron | 55.0% |
| ! | GGGGAAGACTGGTGTTAGTG+GGG | - | chr4.3:18875027-18875046 | MS.gene023153:intron | 55.0% |
| !! | TGGATTTGTGGTGGCGGTGA+CGG | - | chr4.3:18873653-18873672 | MS.gene023153:intron | 55.0% |
| GTGGGGAGAGTCTAGGTGTG+AGG | - | chr4.3:18875044-18875063 | MS.gene023153:intron | 60.0% | |
| !! | GGATTTGTGGTGGCGGTGAC+GGG | - | chr4.3:18873654-18873673 | MS.gene023153:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 18873140 | 18876006 | 18873140 | ID=MS.gene023153 |
| chr4.3 | mRNA | 18873140 | 18876006 | 18873140 | ID=MS.gene023153.t1;Parent=MS.gene023153 |
| chr4.3 | exon | 18875891 | 18876006 | 18875891 | ID=MS.gene023153.t1.exon1;Parent=MS.gene023153.t1 |
| chr4.3 | CDS | 18875891 | 18876006 | 18875891 | ID=cds.MS.gene023153.t1;Parent=MS.gene023153.t1 |
| chr4.3 | exon | 18875337 | 18875502 | 18875337 | ID=MS.gene023153.t1.exon2;Parent=MS.gene023153.t1 |
| chr4.3 | CDS | 18875337 | 18875502 | 18875337 | ID=cds.MS.gene023153.t1;Parent=MS.gene023153.t1 |
| chr4.3 | exon | 18875172 | 18875222 | 18875172 | ID=MS.gene023153.t1.exon3;Parent=MS.gene023153.t1 |
| chr4.3 | CDS | 18875172 | 18875222 | 18875172 | ID=cds.MS.gene023153.t1;Parent=MS.gene023153.t1 |
| chr4.3 | exon | 18874611 | 18874676 | 18874611 | ID=MS.gene023153.t1.exon4;Parent=MS.gene023153.t1 |
| chr4.3 | CDS | 18874611 | 18874676 | 18874611 | ID=cds.MS.gene023153.t1;Parent=MS.gene023153.t1 |
| chr4.3 | exon | 18874425 | 18874493 | 18874425 | ID=MS.gene023153.t1.exon5;Parent=MS.gene023153.t1 |
| chr4.3 | CDS | 18874425 | 18874493 | 18874425 | ID=cds.MS.gene023153.t1;Parent=MS.gene023153.t1 |
| chr4.3 | exon | 18873140 | 18873202 | 18873140 | ID=MS.gene023153.t1.exon6;Parent=MS.gene023153.t1 |
| chr4.3 | CDS | 18873140 | 18873202 | 18873140 | ID=cds.MS.gene023153.t1;Parent=MS.gene023153.t1 |
| Gene Sequence |
| Protein sequence |
