Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36491.t1 | XP_003608502.1 | 100 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 5.70E-96 | 360.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36491.t1 | P46279 | 98.9 | 176 | 2 | 0 | 1 | 176 | 1 | 176 | 6.8e-98 | 357.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36491.t1 | B7FHG8 | 100.0 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 4.1e-96 | 360.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015218 | MS.gene36491 | PPI |
| MS.gene36491 | MS.gene015219 | PPI |
| MS.gene36491 | MS.gene014162 | PPI |
| MS.gene36491 | MS.gene021324 | PPI |
| MS.gene36491 | MS.gene38651 | PPI |
| MS.gene36491 | MS.gene34548 | PPI |
| MS.gene36491 | MS.gene20260 | PPI |
| MS.gene36491 | MS.gene017939 | PPI |
| MS.gene36491 | MS.gene37049 | PPI |
| MS.gene57185 | MS.gene36491 | PPI |
| MS.gene36491 | MS.gene92338 | PPI |
| MS.gene36491 | MS.gene04856 | PPI |
| MS.gene36491 | MS.gene20258 | PPI |
| MS.gene36491 | MS.gene57186 | PPI |
| MS.gene36491 | MS.gene020134 | PPI |
| MS.gene36491 | MS.gene09560 | PPI |
| MS.gene36491 | MS.gene046919 | PPI |
| MS.gene36491 | MS.gene92623 | PPI |
| MS.gene36491 | MS.gene072357 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36491.t1 | MTR_4g096810 | 100.000 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 4.65e-129 | 359 |
| MS.gene36491.t1 | MTR_1g475140 | 34.615 | 156 | 96 | 6 | 22 | 173 | 30 | 183 | 8.15e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36491.t1 | AT5G59180 | 91.429 | 175 | 15 | 0 | 1 | 175 | 1 | 175 | 5.84e-120 | 336 |
| MS.gene36491.t1 | AT4G14660 | 32.680 | 153 | 98 | 4 | 23 | 172 | 27 | 177 | 1.20e-17 | 76.6 |
| MS.gene36491.t1 | AT4G14660 | 32.680 | 153 | 98 | 4 | 23 | 172 | 27 | 177 | 1.20e-17 | 76.6 |
| MS.gene36491.t1 | AT4G14660 | 32.680 | 153 | 98 | 4 | 23 | 172 | 27 | 177 | 1.20e-17 | 76.6 |
| MS.gene36491.t1 | AT3G22900 | 31.373 | 153 | 101 | 3 | 19 | 168 | 21 | 172 | 2.03e-16 | 73.2 |
| MS.gene36491.t1 | AT3G22900 | 31.373 | 153 | 101 | 3 | 19 | 168 | 21 | 172 | 2.03e-16 | 73.2 |
Find 45 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACATCTTTCATTAGTT+TGG | 0.198492 | 4.1:+18298293 | None:intergenic |
| GAAGTGAGGCTAAAGATAAT+TGG | 0.250831 | 4.1:-18296882 | MS.gene36491:CDS |
| ACCCAAGAAATCGTCTTTAA+TGG | 0.252979 | 4.1:+18295599 | None:intergenic |
| TCTAAGATCTCTCCCTTAAA+TGG | 0.305785 | 4.1:+18297753 | None:intergenic |
| TCAGTTGATTCCGGATGATA+TGG | 0.308719 | 4.1:-18297090 | MS.gene36491:intron |
| ACAACACATTGATACTTAAC+TGG | 0.334226 | 4.1:+18297783 | None:intergenic |
| TTTCTCCTTTCAGTTGATTC+CGG | 0.335903 | 4.1:-18297099 | MS.gene36491:intron |
| AGGTGAATTTAAACTGTTGC+AGG | 0.336659 | 4.1:+18295564 | None:intergenic |
| TACCATTAAAGACGATTTCT+TGG | 0.338650 | 4.1:-18295601 | MS.gene36491:CDS |
| TGTTTCGCTCCAGCACTATA+TGG | 0.357275 | 4.1:+18298367 | None:intergenic |
| CCATCTGAAGTAGTGTAGTT+TGG | 0.431946 | 4.1:+18297047 | None:intergenic |
| AAGTGAGGCTAAAGATAATT+GGG | 0.441196 | 4.1:-18296881 | MS.gene36491:CDS |
| TATAAATAAACTTACATGGT+TGG | 0.447507 | 4.1:+18297548 | None:intergenic |
| CAACTGCATCCACGCTACTT+TGG | 0.456540 | 4.1:-18298342 | MS.gene36491:CDS |
| ACCATTAAAGACGATTTCTT+GGG | 0.460088 | 4.1:-18295600 | MS.gene36491:CDS |
| GGATTTGTGGTGGCGGTGAC+GGG | 0.462372 | 4.1:-18297861 | MS.gene36491:CDS |
| AAGATGTTGAAGGCACTTGC+AGG | 0.468765 | 4.1:-18298281 | MS.gene36491:intron |
| TGGATTTGTGGTGGCGGTGA+CGG | 0.486501 | 4.1:-18297862 | MS.gene36491:CDS |
| AGTTTGGCATGTCTCCAGTC+TGG | 0.489328 | 4.1:+18297063 | None:intergenic |
| GTCTGGAATTCCATATCATC+CGG | 0.502025 | 4.1:+18297080 | None:intergenic |
| TTGGAAACGAAGATTTGAAC+TGG | 0.502780 | 4.1:+18297567 | None:intergenic |
| AACTGGAAATGTCACAAATC+CGG | 0.505554 | 4.1:+18297800 | None:intergenic |
| GGAATTGAGAACATTGGTAA+AGG | 0.511677 | 4.1:-18297840 | MS.gene36491:CDS |
| GGGATAATTCGTGATGGGAC+CGG | 0.514333 | 4.1:-18297819 | MS.gene36491:CDS |
| GAATTGAGAACATTGGTAAA+GGG | 0.515497 | 4.1:-18297839 | MS.gene36491:CDS |
| AAACTAATGAAAGATGTTGA+AGG | 0.515705 | 4.1:-18298291 | MS.gene36491:CDS |
| CCAAACTACACTACTTCAGA+TGG | 0.523620 | 4.1:-18297047 | MS.gene36491:CDS |
| CTATTACACAGTGGTCGACA+TGG | 0.559149 | 4.1:-18297882 | MS.gene36491:intron |
| TGTTGTTACCATGGTGAACA+AGG | 0.559537 | 4.1:-18297727 | MS.gene36491:intron |
| CTACACTACTTCAGATGGAT+CGG | 0.562802 | 4.1:-18297042 | MS.gene36491:intron |
| CAGTGGTCGACATGGATTTG+TGG | 0.563376 | 4.1:-18297874 | MS.gene36491:CDS |
| GGTGAATTTAAACTGTTGCA+GGG | 0.565464 | 4.1:+18295565 | None:intergenic |
| CTTAGAAGCTGTTGTTACCA+TGG | 0.567172 | 4.1:-18297736 | MS.gene36491:CDS |
| TTTACAGGTTAAGATTCAGA+AGG | 0.579246 | 4.1:-18296910 | MS.gene36491:intron |
| GGTAAAGGGATAATTCGTGA+TGG | 0.598133 | 4.1:-18297825 | MS.gene36491:CDS |
| GTAAAGGGATAATTCGTGAT+GGG | 0.604324 | 4.1:-18297824 | MS.gene36491:CDS |
| GATGATATGGAATTCCAGAC+TGG | 0.604450 | 4.1:-18297077 | MS.gene36491:CDS |
| AAAGATAATTGGGACTCGAG+TGG | 0.614804 | 4.1:-18296871 | MS.gene36491:CDS |
| TCGACATGGATTTGTGGTGG+CGG | 0.622425 | 4.1:-18297868 | MS.gene36491:CDS |
| TGGAAACAAGATTATCACGA+AGG | 0.623150 | 4.1:+18298313 | None:intergenic |
| TGCACAAACCTTGTTCACCA+TGG | 0.635657 | 4.1:+18297719 | None:intergenic |
| GTGACGGGAATTGAGAACAT+TGG | 0.640814 | 4.1:-18297846 | MS.gene36491:CDS |
| TTCAGAAGGATAGTGAAGTG+AGG | 0.661943 | 4.1:-18296896 | MS.gene36491:CDS |
| AGGTTACGACCAAAGTAGCG+TGG | 0.680189 | 4.1:+18298333 | None:intergenic |
| TGGTCGACATGGATTTGTGG+TGG | 0.690678 | 4.1:-18297871 | MS.gene36491:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTATCATAAACTA+AGG | + | chr4.1:18297300-18297319 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTTTAAGTTCA+TGG | - | chr4.1:18297310-18297329 | MS.gene36491:intron | 10.0% |
| !! | AAGTTTAATTACTAGAATTA+TGG | + | chr4.1:18295717-18295736 | None:intergenic | 15.0% |
| !! | AGTTTAATTACTAGAATTAT+GGG | + | chr4.1:18295716-18295735 | None:intergenic | 15.0% |
| !! | TAATTCTAGTAATTAAACTT+AGG | - | chr4.1:18295717-18295736 | MS.gene36491:intron | 15.0% |
| !!! | ATAATTTAGAATAAAACTGA+TGG | + | chr4.1:18297169-18297188 | None:intergenic | 15.0% |
| !!! | GTTTTATAAATAAACTTACA+TGG | + | chr4.1:18296406-18296425 | None:intergenic | 15.0% |
| !!! | TAACTATTTATCATGTTTTA+TGG | - | chr4.1:18298256-18298275 | MS.gene36491:intron | 15.0% |
| !!! | TAATTTAGAATAAAACTGAT+GGG | + | chr4.1:18297168-18297187 | None:intergenic | 15.0% |
| !!! | TTCATATTTGCTTTTATAAT+TGG | + | chr4.1:18297366-18297385 | None:intergenic | 15.0% |
| !!! | TTTCTTTTCAATTTTGTTTT+TGG | - | chr4.1:18295814-18295833 | MS.gene36491:intron | 15.0% |
| !! | AACAATAATAACAGTATCTT+AGG | + | chr4.1:18296448-18296467 | None:intergenic | 20.0% |
| !! | AACATTATCTAATGCTAAAA+CGG | + | chr4.1:18298058-18298077 | None:intergenic | 20.0% |
| !! | AGTTAATTAAAACATCTTAC+AGG | + | chr4.1:18298005-18298024 | None:intergenic | 20.0% |
| !! | AGTTATATACAAAAGATCAA+AGG | + | chr4.1:18298241-18298260 | None:intergenic | 20.0% |
| !! | ATAAAAGATTAACCTATACT+TGG | + | chr4.1:18297772-18297791 | None:intergenic | 20.0% |
| !! | ATTTGTACATATCATAAAAG+TGG | - | chr4.1:18297649-18297668 | MS.gene36491:intron | 20.0% |
| !! | GAAATAAACCTGTAATAATT+TGG | - | chr4.1:18295989-18296008 | MS.gene36491:intron | 20.0% |
| !! | TATAAATAAACTTACATGGT+TGG | + | chr4.1:18296402-18296421 | None:intergenic | 20.0% |
| !! | TATTATAGACATTGTTAGTT+TGG | + | chr4.1:18295937-18295956 | None:intergenic | 20.0% |
| !! | TGATTCTCATTAAGAAATAT+TGG | + | chr4.1:18298090-18298109 | None:intergenic | 20.0% |
| !! | TTTAAGAGATTCGAATTAAT+AGG | - | chr4.1:18297192-18297211 | MS.gene36491:intron | 20.0% |
| !!! | AAATGAGAATCATGATTTTA+AGG | + | chr4.1:18296483-18296502 | None:intergenic | 20.0% |
| !!! | ATTATAGACATTGTTAGTTT+GGG | + | chr4.1:18295936-18295955 | None:intergenic | 20.0% |
| !!! | GTTAATCTTTTATCACTTTT+GGG | - | chr4.1:18297779-18297798 | MS.gene36491:CDS | 20.0% |
| !!! | TAATAAAACATTTTGTGTCT+TGG | - | chr4.1:18295952-18295971 | MS.gene36491:intron | 20.0% |
| !!! | TTAATCTTTTATCACTTTTG+GGG | - | chr4.1:18297780-18297799 | MS.gene36491:CDS | 20.0% |
| !!! | TTGATTGTTTGTTTTTTTAC+AGG | - | chr4.1:18297022-18297041 | MS.gene36491:intron | 20.0% |
| !!! | TTTATTTTTAAGTTCATGGT+AGG | - | chr4.1:18297314-18297333 | MS.gene36491:intron | 20.0% |
| ! | AAACTAATGAAAGATGTTGA+AGG | - | chr4.1:18295656-18295675 | MS.gene36491:intron | 25.0% |
| ! | AGTTTGATCCAAATTATTAC+AGG | + | chr4.1:18296000-18296019 | None:intergenic | 25.0% |
| ! | ATAATAATTTCTCGTTGAAG+AGG | - | chr4.1:18296940-18296959 | MS.gene36491:intron | 25.0% |
| ! | TTCAACATCTTTCATTAGTT+TGG | + | chr4.1:18295657-18295676 | None:intergenic | 25.0% |
| !! | AATGTGTTTTCTTCTGTTTT+TGG | - | chr4.1:18296997-18297016 | MS.gene36491:intron | 25.0% |
| !! | CATTTGTCATATTGACTATA+TGG | - | chr4.1:18296645-18296664 | MS.gene36491:intron | 25.0% |
| !! | GGTTAATCTTTTATCACTTT+TGG | - | chr4.1:18297778-18297797 | MS.gene36491:CDS | 25.0% |
| !! | TTATAGACATTGTTAGTTTG+GGG | + | chr4.1:18295935-18295954 | None:intergenic | 25.0% |
| !!! | AGAGAGCAATTTGTTTTTTT+AGG | - | chr4.1:18296964-18296983 | MS.gene36491:intron | 25.0% |
| AAGTGAGGCTAAAGATAATT+GGG | - | chr4.1:18297066-18297085 | MS.gene36491:CDS | 30.0% | |
| AATGAAAAAACCTCAAGTGA+TGG | + | chr4.1:18295752-18295771 | None:intergenic | 30.0% | |
| ACAACACATTGATACTTAAC+TGG | + | chr4.1:18296167-18296186 | None:intergenic | 30.0% | |
| ACATGAGGAAATAGTAACAA+AGG | + | chr4.1:18296803-18296822 | None:intergenic | 30.0% | |
| ACCATTAAAGACGATTTCTT+GGG | - | chr4.1:18298347-18298366 | MS.gene36491:CDS | 30.0% | |
| ACTGAAAGCTGCAATATATA+TGG | + | chr4.1:18297122-18297141 | None:intergenic | 30.0% | |
| ACTTATGTTCTTCTGAATGA+TGG | - | chr4.1:18296597-18296616 | MS.gene36491:intron | 30.0% | |
| AGAAGTAACATCAACAAAGT+AGG | + | chr4.1:18297951-18297970 | None:intergenic | 30.0% | |
| AGTAAAGTAAAATTGCAGCA+TGG | + | chr4.1:18297834-18297853 | None:intergenic | 30.0% | |
| AGTGAGGAGAATGAAAAAAT+AGG | + | chr4.1:18298137-18298156 | None:intergenic | 30.0% | |
| ATCTTAGGTATAAGTGCAAA+AGG | + | chr4.1:18296433-18296452 | None:intergenic | 30.0% | |
| CAACTGAAAGGAGAAAAAAA+GGG | + | chr4.1:18296844-18296863 | None:intergenic | 30.0% | |
| CAAGAAACAAAAGCTATATC+TGG | + | chr4.1:18297241-18297260 | None:intergenic | 30.0% | |
| CTGAAAGCTGCAATATATAT+GGG | + | chr4.1:18297121-18297140 | None:intergenic | 30.0% | |
| GAATTGAGAACATTGGTAAA+GGG | - | chr4.1:18296108-18296127 | MS.gene36491:intron | 30.0% | |
| GATCAAGACAAAAATACATG+AGG | + | chr4.1:18296818-18296837 | None:intergenic | 30.0% | |
| GATCACTATCTGTATGAAAA+TGG | - | chr4.1:18296681-18296700 | MS.gene36491:intron | 30.0% | |
| GTGATAAAAGATTAACCAAG+TGG | + | chr4.1:18297699-18297718 | None:intergenic | 30.0% | |
| TACCATTAAAGACGATTTCT+TGG | - | chr4.1:18298346-18298365 | MS.gene36491:CDS | 30.0% | |
| TCAACTGAAAGGAGAAAAAA+AGG | + | chr4.1:18296845-18296864 | None:intergenic | 30.0% | |
| TTCTTGCAAGGTTTGAAAAA+AGG | - | chr4.1:18296715-18296734 | MS.gene36491:intron | 30.0% | |
| TTTACAGGTTAAGATTCAGA+AGG | - | chr4.1:18297037-18297056 | MS.gene36491:intron | 30.0% | |
| ! | TGTCTTGGACTAATTTTGTT+TGG | - | chr4.1:18295967-18295986 | MS.gene36491:intron | 30.0% |
| ! | TTTTGAACGTTACTTGAAGA+TGG | - | chr4.1:18295873-18295892 | MS.gene36491:intron | 30.0% |
| !! | ATATAGCTTTTGTTTCTTGC+AGG | - | chr4.1:18297242-18297261 | MS.gene36491:intron | 30.0% |
| !! | ATTGTGATATTGAGTTGGAT+AGG | - | chr4.1:18297467-18297486 | MS.gene36491:intron | 30.0% |
| !! | GTTGTTTTCAGACCATTTAA+GGG | - | chr4.1:18296182-18296201 | MS.gene36491:intron | 30.0% |
| !! | TAATTAACTTGTGATAGCGA+TGG | - | chr4.1:18298016-18298035 | MS.gene36491:intron | 30.0% |
| !! | TTTGTGTTGATGCAACTTTT+GGG | - | chr4.1:18296035-18296054 | MS.gene36491:intron | 30.0% |
| !!! | GTTTTCATTGATTTCTTGCA+AGG | - | chr4.1:18296703-18296722 | MS.gene36491:intron | 30.0% |
| !!! | TGTTGTTTTCAGACCATTTA+AGG | - | chr4.1:18296181-18296200 | MS.gene36491:intron | 30.0% |
| AACTGGAAATGTCACAAATC+CGG | + | chr4.1:18296150-18296169 | None:intergenic | 35.0% | |
| AAGGCAAAACAGAATAGCTA+CGG | + | chr4.1:18296784-18296803 | None:intergenic | 35.0% | |
| ACCCAAGAAATCGTCTTTAA+TGG | + | chr4.1:18298351-18298370 | None:intergenic | 35.0% | |
| AGGAGAATAATAACCCTTCT+CGG | + | chr4.1:18297931-18297950 | None:intergenic | 35.0% | |
| ATAAACTAAGGCTGTTCTCT+AGG | + | chr4.1:18297288-18297307 | None:intergenic | 35.0% | |
| ATATGAATAGACCCACTACA+TGG | - | chr4.1:18297379-18297398 | MS.gene36491:intron | 35.0% | |
| CTAATGCTAAAACGGTAACT+AGG | + | chr4.1:18298050-18298069 | None:intergenic | 35.0% | |
| CTGTATTAAGATGCAGAACA+TGG | - | chr4.1:18297855-18297874 | MS.gene36491:CDS | 35.0% | |
| GAAGTGAGGCTAAAGATAAT+TGG | - | chr4.1:18297065-18297084 | MS.gene36491:CDS | 35.0% | |
| GGAATTGAGAACATTGGTAA+AGG | - | chr4.1:18296107-18296126 | MS.gene36491:intron | 35.0% | |
| GTAAAGGGATAATTCGTGAT+GGG | - | chr4.1:18296123-18296142 | MS.gene36491:intron | 35.0% | |
| TATCAGTTCATTGCATTCAC+AGG | - | chr4.1:18297613-18297632 | MS.gene36491:intron | 35.0% | |
| TATTCGTGTTATAGCCCTAA+GGG | + | chr4.1:18298162-18298181 | None:intergenic | 35.0% | |
| TCAGGATTGTGATATTGAGT+TGG | - | chr4.1:18297462-18297481 | MS.gene36491:intron | 35.0% | |
| TCTTACAGGATAATCATGCA+AGG | + | chr4.1:18297991-18298010 | None:intergenic | 35.0% | |
| TGAAAGTGACTACCAAGTAT+AGG | - | chr4.1:18297757-18297776 | MS.gene36491:CDS | 35.0% | |
| TGAGTTCTGTTTGTACAGAT+GGG | - | chr4.1:18296338-18296357 | MS.gene36491:intron | 35.0% | |
| TGGAAACAAGATTATCACGA+AGG | + | chr4.1:18295637-18295656 | None:intergenic | 35.0% | |
| TTGAGTTCTGTTTGTACAGA+TGG | - | chr4.1:18296337-18296356 | MS.gene36491:intron | 35.0% | |
| TTGGAAACGAAGATTTGAAC+TGG | + | chr4.1:18296383-18296402 | None:intergenic | 35.0% | |
| ! | TATGCTAGTGTTTTACCACT+TGG | - | chr4.1:18297681-18297700 | MS.gene36491:intron | 35.0% |
| ! | TCTAAGATCTCTCCCTTAAA+TGG | + | chr4.1:18296197-18296216 | None:intergenic | 35.0% |
| ! | TTGTTAGTTTGGGGTTTAAG+AGG | + | chr4.1:18295926-18295945 | None:intergenic | 35.0% |
| ! | TTTCCTCATCAGCTTTATCT+AGG | - | chr4.1:18296269-18296288 | MS.gene36491:intron | 35.0% |
| ! | TTTCTCCTTTCAGTTGATTC+CGG | - | chr4.1:18296848-18296867 | MS.gene36491:intron | 35.0% |
| !! | AATAGGATATGAAAGCACTG+TGG | - | chr4.1:18297209-18297228 | MS.gene36491:intron | 35.0% |
| !! | AGATCTAGCTCTACAATGAA+AGG | + | chr4.1:18297540-18297559 | None:intergenic | 35.0% |
| !! | CTTTGTGTTGATGCAACTTT+TGG | - | chr4.1:18296034-18296053 | MS.gene36491:intron | 35.0% |
| !! | GGATCAAACTGTTTCTGTTT+CGG | - | chr4.1:18296010-18296029 | MS.gene36491:intron | 35.0% |
| AAAGATAATTGGGACTCGAG+TGG | - | chr4.1:18297076-18297095 | MS.gene36491:CDS | 40.0% | |
| ACACCTAGATAAAGCTGATG+AGG | + | chr4.1:18296275-18296294 | None:intergenic | 40.0% | |
| AGGCAAAACAGAATAGCTAC+GGG | + | chr4.1:18296783-18296802 | None:intergenic | 40.0% | |
| ATCATCCGGAATCAACTGAA+AGG | + | chr4.1:18296856-18296875 | None:intergenic | 40.0% | |
| ATGGTAGGTATACACGAGAA+GGG | - | chr4.1:18297398-18297417 | MS.gene36491:intron | 40.0% | |
| ATGTTGATCCCTGTTGACAT+GGG | + | chr4.1:18297733-18297752 | None:intergenic | 40.0% | |
| ATTGGATCACCTGTGTCATA+AGG | + | chr4.1:18297348-18297367 | None:intergenic | 40.0% | |
| CAACTTGACTGCAACAAGTT+TGG | + | chr4.1:18296570-18296589 | None:intergenic | 40.0% | |
| CCAAACTACACTACTTCAGA+TGG | - | chr4.1:18296900-18296919 | MS.gene36491:CDS | 40.0% | |
| CGAATACAATGAACACTGAC+CGG | - | chr4.1:18298176-18298195 | MS.gene36491:intron | 40.0% | |
| CTACACTACTTCAGATGGAT+CGG | - | chr4.1:18296905-18296924 | MS.gene36491:CDS | 40.0% | |
| CTACGGGAGAGACTAAAATT+GGG | + | chr4.1:18296767-18296786 | None:intergenic | 40.0% | |
| CTTAGAAGCTGTTGTTACCA+TGG | - | chr4.1:18296211-18296230 | MS.gene36491:intron | 40.0% | |
| GACAAAAATGCCATCACTTG+AGG | - | chr4.1:18295739-18295758 | MS.gene36491:intron | 40.0% | |
| GAGAGAATATCTCTCTGGTT+AGG | - | chr4.1:18297489-18297508 | MS.gene36491:intron | 40.0% | |
| GAGTTCTGTTTGTACAGATG+GGG | - | chr4.1:18296339-18296358 | MS.gene36491:intron | 40.0% | |
| GATAGGAGAGAATATCTCTC+TGG | - | chr4.1:18297484-18297503 | MS.gene36491:intron | 40.0% | |
| GATGATATGGAATTCCAGAC+TGG | - | chr4.1:18296870-18296889 | MS.gene36491:CDS | 40.0% | |
| GGCTTTCAACTATTACACAG+TGG | - | chr4.1:18296056-18296075 | MS.gene36491:intron | 40.0% | |
| GGTAAAGGGATAATTCGTGA+TGG | - | chr4.1:18296122-18296141 | MS.gene36491:intron | 40.0% | |
| GTATTCGTGTTATAGCCCTA+AGG | + | chr4.1:18298163-18298182 | None:intergenic | 40.0% | |
| GTGTATACCTACCATGTAGT+GGG | + | chr4.1:18297393-18297412 | None:intergenic | 40.0% | |
| GTTGCATTGCTCATAACTGT+CGG | - | chr4.1:18297586-18297605 | MS.gene36491:CDS | 40.0% | |
| TAAGTTCATGGTAGGACCTT+GGG | - | chr4.1:18297322-18297341 | MS.gene36491:intron | 40.0% | |
| TGAGGAAAATGTAGAGACAG+AGG | + | chr4.1:18296257-18296276 | None:intergenic | 40.0% | |
| TGTGTCGAATGTCGATAAAG+TGG | - | chr4.1:18296305-18296324 | MS.gene36491:intron | 40.0% | |
| TGTTGTTACCATGGTGAACA+AGG | - | chr4.1:18296220-18296239 | MS.gene36491:intron | 40.0% | |
| TTAAGTTCATGGTAGGACCT+TGG | - | chr4.1:18297321-18297340 | MS.gene36491:intron | 40.0% | |
| TTCAGAAGGATAGTGAAGTG+AGG | - | chr4.1:18297051-18297070 | MS.gene36491:CDS | 40.0% | |
| ! | AGTTACTTTATGCACCGAGA+AGG | - | chr4.1:18297914-18297933 | MS.gene36491:intron | 40.0% |
| ! | CCATCTGAAGTAGTGTAGTT+TGG | + | chr4.1:18296903-18296922 | None:intergenic | 40.0% |
| ! | GTCTGGAATTCCATATCATC+CGG | + | chr4.1:18296870-18296889 | None:intergenic | 40.0% |
| ! | GTTACTTTATGCACCGAGAA+GGG | - | chr4.1:18297915-18297934 | MS.gene36491:intron | 40.0% |
| ! | TCAGTTGATTCCGGATGATA+TGG | - | chr4.1:18296857-18296876 | MS.gene36491:CDS | 40.0% |
| ! | TTCTCGGTGCATAAAGTAAC+TGG | + | chr4.1:18297915-18297934 | None:intergenic | 40.0% |
| AAAACGGTAACTAGGCTGCT+AGG | + | chr4.1:18298042-18298061 | None:intergenic | 45.0% | |
| CATGGTAGGTATACACGAGA+AGG | - | chr4.1:18297397-18297416 | MS.gene36491:intron | 45.0% | |
| CATGTCAACAGGGATCAACA+TGG | - | chr4.1:18297732-18297751 | MS.gene36491:CDS | 45.0% | |
| CATGTTGATCCCTGTTGACA+TGG | + | chr4.1:18297734-18297753 | None:intergenic | 45.0% | |
| CCTATGCAGAACTGCAAAAG+AGG | + | chr4.1:18298326-18298345 | None:intergenic | 45.0% | |
| CGTGTATACCTACCATGTAG+TGG | + | chr4.1:18297394-18297413 | None:intergenic | 45.0% | |
| CTATTACACAGTGGTCGACA+TGG | - | chr4.1:18296065-18296084 | MS.gene36491:intron | 45.0% | |
| GAATAGACCCACTACATGGT+AGG | - | chr4.1:18297383-18297402 | MS.gene36491:intron | 45.0% | |
| GAGAAACTGAAGAGTTGCAC+CGG | + | chr4.1:18298198-18298217 | None:intergenic | 45.0% | |
| GCTACGGGAGAGACTAAAAT+TGG | + | chr4.1:18296768-18296787 | None:intergenic | 45.0% | |
| GGGTTTAAGAGGTCTGTTAC+AGG | + | chr4.1:18295915-18295934 | None:intergenic | 45.0% | |
| TCCAACAACCCATGTCAACA+GGG | - | chr4.1:18297722-18297741 | MS.gene36491:intron | 45.0% | |
| TGCACAAACCTTGTTCACCA+TGG | + | chr4.1:18296231-18296250 | None:intergenic | 45.0% | |
| TGGTAGGTATACACGAGAAG+GGG | - | chr4.1:18297399-18297418 | MS.gene36491:intron | 45.0% | |
| TGTTTCGCTCCAGCACTATA+TGG | + | chr4.1:18295583-18295602 | None:intergenic | 45.0% | |
| TTCCAACAACCCATGTCAAC+AGG | - | chr4.1:18297721-18297740 | MS.gene36491:intron | 45.0% | |
| ! | CCTCTTTTGCAGTTCTGCAT+AGG | - | chr4.1:18298323-18298342 | MS.gene36491:CDS | 45.0% |
| ! | GTGACGGGAATTGAGAACAT+TGG | - | chr4.1:18296101-18296120 | MS.gene36491:intron | 45.0% |
| ! | GTTGACATGGGTTGTTGGAA+TGG | + | chr4.1:18297721-18297740 | None:intergenic | 45.0% |
| !! | AAGATGTTGAAGGCACTTGC+AGG | - | chr4.1:18295666-18295685 | MS.gene36491:intron | 45.0% |
| !!! | ATGGGGTTTTTTGCTGAAGC+TGG | - | chr4.1:18296356-18296375 | MS.gene36491:intron | 45.0% |
| AGGTTACGACCAAAGTAGCG+TGG | + | chr4.1:18295617-18295636 | None:intergenic | 50.0% | |
| AGTTTGGCATGTCTCCAGTC+TGG | + | chr4.1:18296887-18296906 | None:intergenic | 50.0% | |
| ATACACGAGAAGGGGAAGAC+TGG | - | chr4.1:18297407-18297426 | MS.gene36491:intron | 50.0% | |
| ATTCTCCTCACTCGCCCTTA+GGG | - | chr4.1:18298145-18298164 | MS.gene36491:intron | 50.0% | |
| CAACTGCATCCACGCTACTT+TGG | - | chr4.1:18295605-18295624 | MS.gene36491:CDS | 50.0% | |
| CAGTGGTCGACATGGATTTG+TGG | - | chr4.1:18296073-18296092 | MS.gene36491:intron | 50.0% | |
| TCGACATGGATTTGTGGTGG+CGG | - | chr4.1:18296079-18296098 | MS.gene36491:intron | 50.0% | |
| TGGTCGACATGGATTTGTGG+TGG | - | chr4.1:18296076-18296095 | MS.gene36491:intron | 50.0% | |
| ! | AAGGGGAAGACTGGTGTTAG+TGG | - | chr4.1:18297416-18297435 | MS.gene36491:intron | 50.0% |
| ! | AGGGGAAGACTGGTGTTAGT+GGG | - | chr4.1:18297417-18297436 | MS.gene36491:intron | 50.0% |
| ! | GGGATAATTCGTGATGGGAC+CGG | - | chr4.1:18296128-18296147 | MS.gene36491:intron | 50.0% |
| ! | TCCCTGTTGACATGGGTTGT+TGG | + | chr4.1:18297726-18297745 | None:intergenic | 50.0% |
| !! | GTCTAGGTGTGAGGGTATTC+AGG | - | chr4.1:18297444-18297463 | MS.gene36491:intron | 50.0% |
| !! | TGGTTAGGAGTCACTGACTC+TGG | - | chr4.1:18297504-18297523 | MS.gene36491:intron | 50.0% |
| CACCTGTGTCATAAGGCCCA+AGG | + | chr4.1:18297341-18297360 | None:intergenic | 55.0% | |
| CATTCTCCTCACTCGCCCTT+AGG | - | chr4.1:18298144-18298163 | MS.gene36491:intron | 55.0% | |
| GGTGTTAGTGGGGAGAGTCT+AGG | - | chr4.1:18297428-18297447 | MS.gene36491:intron | 55.0% | |
| TATAGCCCTAAGGGCGAGTG+AGG | + | chr4.1:18298153-18298172 | None:intergenic | 55.0% | |
| TGGGGAGAGTCTAGGTGTGA+GGG | - | chr4.1:18297436-18297455 | MS.gene36491:intron | 55.0% | |
| ! | GACCTTGGGCCTTATGACAC+AGG | - | chr4.1:18297336-18297355 | MS.gene36491:intron | 55.0% |
| ! | GGGGAAGACTGGTGTTAGTG+GGG | - | chr4.1:18297418-18297437 | MS.gene36491:intron | 55.0% |
| !! | TGGATTTGTGGTGGCGGTGA+CGG | - | chr4.1:18296085-18296104 | MS.gene36491:intron | 55.0% |
| GTGGGGAGAGTCTAGGTGTG+AGG | - | chr4.1:18297435-18297454 | MS.gene36491:intron | 60.0% | |
| !! | GGATTTGTGGTGGCGGTGAC+GGG | - | chr4.1:18296086-18296105 | MS.gene36491:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18295572 | 18298397 | 18295572 | ID=MS.gene36491 |
| chr4.1 | mRNA | 18295572 | 18298397 | 18295572 | ID=MS.gene36491.t1;Parent=MS.gene36491 |
| chr4.1 | exon | 18298282 | 18298397 | 18298282 | ID=MS.gene36491.t1.exon1;Parent=MS.gene36491.t1 |
| chr4.1 | CDS | 18298282 | 18298397 | 18298282 | ID=cds.MS.gene36491.t1;Parent=MS.gene36491.t1 |
| chr4.1 | exon | 18297728 | 18297893 | 18297728 | ID=MS.gene36491.t1.exon2;Parent=MS.gene36491.t1 |
| chr4.1 | CDS | 18297728 | 18297893 | 18297728 | ID=cds.MS.gene36491.t1;Parent=MS.gene36491.t1 |
| chr4.1 | exon | 18297563 | 18297613 | 18297563 | ID=MS.gene36491.t1.exon3;Parent=MS.gene36491.t1 |
| chr4.1 | CDS | 18297563 | 18297613 | 18297563 | ID=cds.MS.gene36491.t1;Parent=MS.gene36491.t1 |
| chr4.1 | exon | 18297043 | 18297108 | 18297043 | ID=MS.gene36491.t1.exon4;Parent=MS.gene36491.t1 |
| chr4.1 | CDS | 18297043 | 18297108 | 18297043 | ID=cds.MS.gene36491.t1;Parent=MS.gene36491.t1 |
| chr4.1 | exon | 18296857 | 18296925 | 18296857 | ID=MS.gene36491.t1.exon5;Parent=MS.gene36491.t1 |
| chr4.1 | CDS | 18296857 | 18296925 | 18296857 | ID=cds.MS.gene36491.t1;Parent=MS.gene36491.t1 |
| chr4.1 | exon | 18295572 | 18295634 | 18295572 | ID=MS.gene36491.t1.exon6;Parent=MS.gene36491.t1 |
| chr4.1 | CDS | 18295572 | 18295634 | 18295572 | ID=cds.MS.gene36491.t1;Parent=MS.gene36491.t1 |
| Gene Sequence |
| Protein sequence |
