Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37447.t1 | XP_003603107.1 | 95.3 | 278 | 11 | 1 | 1 | 276 | 1 | 278 | 6.90E-157 | 563.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37447.t1 | O82307 | 46.7 | 257 | 102 | 7 | 28 | 256 | 64 | 313 | 1.3e-58 | 228.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37447.t1 | G7J714 | 95.3 | 278 | 11 | 1 | 1 | 276 | 1 | 278 | 5.0e-157 | 563.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene37447.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052011 | MS.gene37447 | 0.830378 | 3.04E-55 | -1.69E-46 |
| MS.gene053169 | MS.gene37447 | -0.818128 | 2.30E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene37447 | -0.804026 | 2.63E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene37447 | -0.834234 | 3.37E-56 | -1.69E-46 |
| MS.gene056902 | MS.gene37447 | -0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene37447 | -0.81695 | 4.25E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37447.t1 | MTR_3g103960 | 95.324 | 278 | 11 | 1 | 1 | 276 | 1 | 278 | 0.0 | 546 |
| MS.gene37447.t1 | MTR_8g102100 | 44.479 | 326 | 107 | 9 | 24 | 276 | 52 | 376 | 2.35e-76 | 237 |
| MS.gene37447.t1 | MTR_6g090380 | 44.918 | 305 | 112 | 9 | 23 | 275 | 76 | 376 | 4.52e-74 | 231 |
| MS.gene37447.t1 | MTR_5g071070 | 64.912 | 114 | 39 | 1 | 43 | 156 | 138 | 250 | 9.64e-53 | 181 |
| MS.gene37447.t1 | MTR_4g078660 | 66.972 | 109 | 35 | 1 | 49 | 157 | 56 | 163 | 1.99e-52 | 174 |
| MS.gene37447.t1 | MTR_5g071070 | 57.664 | 137 | 51 | 2 | 43 | 173 | 220 | 355 | 4.59e-52 | 181 |
| MS.gene37447.t1 | MTR_7g092070 | 60.294 | 136 | 50 | 2 | 43 | 175 | 254 | 388 | 4.66e-52 | 181 |
| MS.gene37447.t1 | MTR_2g090605 | 68.571 | 105 | 32 | 1 | 53 | 157 | 77 | 180 | 7.40e-51 | 172 |
| MS.gene37447.t1 | MTR_3g070880 | 49.704 | 169 | 81 | 2 | 16 | 181 | 126 | 293 | 2.81e-49 | 170 |
| MS.gene37447.t1 | MTR_3g029590 | 48.876 | 178 | 76 | 5 | 43 | 219 | 254 | 417 | 4.47e-49 | 173 |
| MS.gene37447.t1 | MTR_5g082830 | 64.035 | 114 | 40 | 1 | 43 | 156 | 207 | 319 | 5.30e-48 | 169 |
| MS.gene37447.t1 | MTR_1g075890 | 59.690 | 129 | 50 | 2 | 43 | 171 | 219 | 345 | 5.15e-47 | 166 |
| MS.gene37447.t1 | MTR_3g435680 | 50.000 | 158 | 64 | 5 | 31 | 175 | 122 | 277 | 1.10e-45 | 158 |
| MS.gene37447.t1 | MTR_1g050438 | 60.550 | 109 | 42 | 1 | 48 | 156 | 223 | 330 | 1.63e-45 | 161 |
| MS.gene37447.t1 | MTR_0728s0020 | 60.550 | 109 | 42 | 1 | 48 | 156 | 239 | 346 | 2.75e-45 | 161 |
| MS.gene37447.t1 | MTR_3g435590 | 37.398 | 246 | 138 | 6 | 43 | 276 | 228 | 469 | 1.52e-44 | 157 |
| MS.gene37447.t1 | MTR_3g464270 | 44.872 | 156 | 82 | 2 | 52 | 207 | 8 | 159 | 1.72e-40 | 144 |
| MS.gene37447.t1 | MTR_3g464260 | 45.270 | 148 | 45 | 4 | 39 | 177 | 183 | 303 | 3.16e-29 | 116 |
| MS.gene37447.t1 | MTR_3g464290 | 56.977 | 86 | 35 | 2 | 43 | 127 | 90 | 174 | 2.21e-27 | 110 |
| MS.gene37447.t1 | MTR_3g464280 | 31.250 | 192 | 67 | 4 | 39 | 202 | 165 | 319 | 9.31e-22 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37447.t1 | AT4G29190 | 45.833 | 288 | 100 | 10 | 43 | 275 | 69 | 355 | 5.71e-69 | 217 |
| MS.gene37447.t1 | AT2G19810 | 41.411 | 326 | 130 | 9 | 10 | 275 | 34 | 358 | 6.85e-69 | 217 |
| MS.gene37447.t1 | AT2G25900 | 47.660 | 235 | 89 | 6 | 49 | 256 | 86 | 313 | 8.19e-65 | 205 |
| MS.gene37447.t1 | AT2G25900 | 47.660 | 235 | 89 | 6 | 49 | 256 | 86 | 313 | 8.19e-65 | 205 |
| MS.gene37447.t1 | AT1G03790 | 51.205 | 166 | 78 | 1 | 12 | 177 | 44 | 206 | 4.15e-56 | 185 |
| MS.gene37447.t1 | AT5G44260 | 63.636 | 121 | 41 | 1 | 37 | 157 | 47 | 164 | 1.52e-53 | 178 |
| MS.gene37447.t1 | AT2G40140 | 44.053 | 227 | 94 | 4 | 43 | 256 | 204 | 410 | 2.28e-52 | 180 |
| MS.gene37447.t1 | AT2G40140 | 44.053 | 227 | 94 | 4 | 43 | 256 | 204 | 410 | 2.28e-52 | 180 |
| MS.gene37447.t1 | AT2G41900 | 60.902 | 133 | 50 | 2 | 43 | 175 | 251 | 381 | 8.17e-51 | 177 |
| MS.gene37447.t1 | AT5G58620 | 63.158 | 114 | 41 | 1 | 43 | 156 | 199 | 311 | 3.06e-50 | 174 |
| MS.gene37447.t1 | AT5G12850 | 62.281 | 114 | 42 | 1 | 43 | 156 | 247 | 359 | 1.29e-49 | 174 |
| MS.gene37447.t1 | AT3G55980 | 55.147 | 136 | 60 | 1 | 43 | 178 | 201 | 335 | 7.34e-49 | 170 |
| MS.gene37447.t1 | AT3G55980 | 55.147 | 136 | 60 | 1 | 43 | 178 | 268 | 402 | 2.45e-48 | 170 |
| MS.gene37447.t1 | AT5G07500 | 60.177 | 113 | 44 | 1 | 48 | 160 | 47 | 158 | 1.14e-47 | 159 |
Find 80 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTGTTGTGTTCCATTC+AGG | 0.185975 | 3.4:-91252952 | None:intergenic |
| GCCAAAATCTATGCAAAATT+TGG | 0.227605 | 3.4:+91253657 | MS.gene37447:CDS |
| TTGGCTTCATGAGGAGTGTT+AGG | 0.270195 | 3.4:+91253505 | MS.gene37447:CDS |
| TGCCCGGAGTTTCGCAAATT+AGG | 0.270671 | 3.4:+91253219 | MS.gene37447:CDS |
| TCCGCAACCCATCCAATATC+AGG | 0.272913 | 3.4:-91253720 | None:intergenic |
| TCTCAGATGGGTTCTGTGTT+TGG | 0.301160 | 3.4:+91253549 | MS.gene37447:CDS |
| TCGGTCCCTGTCCCTGATAT+TGG | 0.350163 | 3.4:+91253708 | MS.gene37447:CDS |
| GTAACGACGGAACCCTTTGC+CGG | 0.351954 | 3.4:+91253328 | MS.gene37447:CDS |
| AAACTATGAAGGGGTTTCTA+TGG | 0.361016 | 3.4:+91253605 | MS.gene37447:CDS |
| TGAATTCGAACATTCGGAAT+TGG | 0.372764 | 3.4:-91253080 | None:intergenic |
| CTCAAACGATGGTGTTGTTT+CGG | 0.374036 | 3.4:+91253689 | MS.gene37447:CDS |
| AAACTCCGGGCAAGGATTGC+CGG | 0.383876 | 3.4:-91253208 | None:intergenic |
| TGGCTTCATGAGGAGTGTTA+GGG | 0.417289 | 3.4:+91253506 | MS.gene37447:CDS |
| GGTGATGAAACAAATGATTC+TGG | 0.419935 | 3.4:-91253411 | None:intergenic |
| GAAACCCCTTCATAGTTTGA+TGG | 0.429345 | 3.4:-91253600 | None:intergenic |
| ATTGTGTTGTGTTCCATTCA+GGG | 0.430094 | 3.4:-91252951 | None:intergenic |
| CTATGTCATTTGAAATGAAA+TGG | 0.449117 | 3.4:-91252996 | None:intergenic |
| TCTGTGTTTGGTTCTCCACC+AGG | 0.450591 | 3.4:+91253561 | MS.gene37447:CDS |
| GAACTTTGAATTCGAACATT+CGG | 0.452223 | 3.4:-91253086 | None:intergenic |
| TCCCTGTCCCTGATATTGGA+TGG | 0.452555 | 3.4:+91253712 | MS.gene37447:CDS |
| TCTATGGAGAGGGTGGAATC+AGG | 0.458742 | 3.4:+91253621 | MS.gene37447:CDS |
| AGCAAACTCGTCGCCGGCAA+AGG | 0.462993 | 3.4:-91253341 | None:intergenic |
| AGTCTTCCATCAAACTATGA+AGG | 0.470405 | 3.4:+91253594 | MS.gene37447:CDS |
| GATTCTTGCCACTTTGCTCA+TGG | 0.472931 | 3.4:+91253258 | MS.gene37447:CDS |
| TGTCCTAATTTGCGAAACTC+CGG | 0.493268 | 3.4:-91253222 | None:intergenic |
| ACCTCGATACGGTGTCCCTC+CGG | 0.499369 | 3.4:+91253464 | MS.gene37447:CDS |
| CCCTGTCCCTGATATTGGAT+GGG | 0.503425 | 3.4:+91253713 | MS.gene37447:CDS |
| GTCATTTGAAATGAAATGGT+TGG | 0.505715 | 3.4:-91252992 | None:intergenic |
| GCAAACTCGTCGCCGGCAAA+GGG | 0.507995 | 3.4:-91253340 | None:intergenic |
| GAAATGAAATGGTTGGAGAA+TGG | 0.518175 | 3.4:-91252985 | None:intergenic |
| ACTAATTCCCTCACGTTCAC+CGG | 0.518657 | 3.4:-91253483 | None:intergenic |
| CTACTCCGGCAATCCTTGCC+CGG | 0.523473 | 3.4:+91253203 | MS.gene37447:CDS |
| ACAGAACCCATCTGAGATAC+CGG | 0.527743 | 3.4:-91253543 | None:intergenic |
| ACCCATCCAATATCAGGGAC+AGG | 0.527836 | 3.4:-91253714 | None:intergenic |
| ACAAAGCTGAGTTCTGTAAC+GGG | 0.529200 | 3.4:-91253307 | None:intergenic |
| ATGAAGGGGTTTCTATGGAG+AGG | 0.530332 | 3.4:+91253610 | MS.gene37447:CDS |
| CCCTGATATTGGATGGGTTG+CGG | 0.534129 | 3.4:+91253719 | MS.gene37447:CDS |
| AAAGTGGCAAGAATCACCTT+TGG | 0.537660 | 3.4:-91253250 | None:intergenic |
| ATGGAGTCCGGTATCTCAGA+TGG | 0.538705 | 3.4:+91253536 | MS.gene37447:CDS |
| GGAGAATCAAGAACTGAAGT+AGG | 0.540667 | 3.4:-91253432 | None:intergenic |
| GTCCTAATTTGCGAAACTCC+GGG | 0.542282 | 3.4:-91253221 | None:intergenic |
| GTCTTCCATCAAACTATGAA+GGG | 0.551277 | 3.4:+91253595 | MS.gene37447:CDS |
| CAAACCTTAAAATCCCTGAA+TGG | 0.551949 | 3.4:+91252938 | MS.gene37447:CDS |
| GGGAATTAGTTGGCTTCATG+AGG | 0.558865 | 3.4:+91253496 | MS.gene37447:CDS |
| AATTTGCGAAACTCCGGGCA+AGG | 0.560424 | 3.4:-91253216 | None:intergenic |
| ATTGGTCTGTTGAGAAAACA+TGG | 0.569270 | 3.4:-91253062 | None:intergenic |
| ACACCGTATCGAGGTTTCCT+CGG | 0.574430 | 3.4:-91253456 | None:intergenic |
| TAGGGTTGATGAATGGAGTC+CGG | 0.576489 | 3.4:+91253524 | MS.gene37447:CDS |
| TACAAAGCTGAGTTCTGTAA+CGG | 0.577054 | 3.4:-91253308 | None:intergenic |
| AGGGGTTTCTATGGAGAGGG+TGG | 0.581223 | 3.4:+91253614 | MS.gene37447:CDS |
| GTGTCCCTCCGGTGAACGTG+AGG | 0.581697 | 3.4:+91253475 | MS.gene37447:CDS |
| CAAAGAAGCAAACTCGTCGC+CGG | 0.584023 | 3.4:-91253347 | None:intergenic |
| GTGAACGTGAGGGAATTAGT+TGG | 0.588119 | 3.4:+91253486 | MS.gene37447:CDS |
| AACGTGGTAGGTCTCATGAC+TGG | 0.591872 | 3.4:+91253118 | MS.gene37447:CDS |
| TCTGTTGAGAAAACATGGAT+TGG | 0.594271 | 3.4:-91253057 | None:intergenic |
| GGAGTGTTAGGGTTGATGAA+TGG | 0.595988 | 3.4:+91253517 | MS.gene37447:CDS |
| AAATTAGGACACTGCACCAA+AGG | 0.596122 | 3.4:+91253234 | MS.gene37447:CDS |
| TTCGAAAATGCCAACGTGGT+AGG | 0.602152 | 3.4:+91253106 | MS.gene37447:CDS |
| AGCTGAGTTCTGTAACGGGA+AGG | 0.612629 | 3.4:-91253303 | None:intergenic |
| GTGTTTGGTTCTCCACCAGG+TGG | 0.617183 | 3.4:+91253564 | MS.gene37447:CDS |
| TGGAGTCCGGTATCTCAGAT+GGG | 0.620816 | 3.4:+91253537 | MS.gene37447:CDS |
| CCGCAACCCATCCAATATCA+GGG | 0.621198 | 3.4:-91253719 | None:intergenic |
| TCTTCCATCAAACTATGAAG+GGG | 0.627249 | 3.4:+91253596 | MS.gene37447:CDS |
| GGTAGATTGAACTCAAACGA+TGG | 0.627699 | 3.4:+91253678 | MS.gene37447:CDS |
| ATTCCCTCACGTTCACCGGA+GGG | 0.629594 | 3.4:-91253479 | None:intergenic |
| CCTCCGAGGAAACCTCGATA+CGG | 0.630315 | 3.4:+91253453 | MS.gene37447:CDS |
| AGAACTCAGCTTTGTAACGA+CGG | 0.632022 | 3.4:+91253315 | MS.gene37447:CDS |
| GTGAAGCGTTATTTGAGACA+CGG | 0.632246 | 3.4:-91253389 | None:intergenic |
| CAGTTCTTGATTCTCCTCCG+AGG | 0.634516 | 3.4:+91253439 | MS.gene37447:CDS |
| AATTCCCTCACGTTCACCGG+AGG | 0.638441 | 3.4:-91253480 | None:intergenic |
| GATTGTCCATACTCTCATCC+CGG | 0.639508 | 3.4:+91253144 | MS.gene37447:CDS |
| TGAAGGGGTTTCTATGGAGA+GGG | 0.646493 | 3.4:+91253611 | MS.gene37447:CDS |
| CCCATCCAATATCAGGGACA+GGG | 0.654742 | 3.4:-91253713 | None:intergenic |
| TGTCCCTCCGGTGAACGTGA+GGG | 0.657063 | 3.4:+91253476 | MS.gene37447:CDS |
| TGGTAGGTCTCATGACTGGA+CGG | 0.659097 | 3.4:+91253122 | MS.gene37447:CDS |
| ACCGGAGGGACACCGTATCG+AGG | 0.671631 | 3.4:-91253465 | None:intergenic |
| AGTCATGAGACCTACCACGT+TGG | 0.672854 | 3.4:-91253116 | None:intergenic |
| ATGGAACACAACACAATACG+AGG | 0.674097 | 3.4:+91252957 | MS.gene37447:CDS |
| CCGTATCGAGGTTTCCTCGG+AGG | 0.710192 | 3.4:-91253453 | None:intergenic |
| AAAGTTCGAAAATGCCAACG+TGG | 0.760484 | 3.4:+91253102 | MS.gene37447:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCAAATTTTGCATAGATTT+TGG | - | chr3.4:91253661-91253680 | None:intergenic | 25.0% |
| !! | CTATGTCATTTGAAATGAAA+TGG | - | chr3.4:91252999-91253018 | None:intergenic | 25.0% |
| GAACTTTGAATTCGAACATT+CGG | - | chr3.4:91253089-91253108 | None:intergenic | 30.0% | |
| GCCAAAATCTATGCAAAATT+TGG | + | chr3.4:91253657-91253676 | MS.gene37447:CDS | 30.0% | |
| ! | GTCATTTGAAATGAAATGGT+TGG | - | chr3.4:91252995-91253014 | None:intergenic | 30.0% |
| AAACTATGAAGGGGTTTCTA+TGG | + | chr3.4:91253605-91253624 | MS.gene37447:CDS | 35.0% | |
| AGTCTTCCATCAAACTATGA+AGG | + | chr3.4:91253594-91253613 | MS.gene37447:CDS | 35.0% | |
| ATTGTGTTGTGTTCCATTCA+GGG | - | chr3.4:91252954-91252973 | None:intergenic | 35.0% | |
| CAAACCTTAAAATCCCTGAA+TGG | + | chr3.4:91252938-91252957 | MS.gene37447:CDS | 35.0% | |
| CCTCAAAAATACAACTACTC+CGG | + | chr3.4:91253189-91253208 | MS.gene37447:CDS | 35.0% | |
| GAAATGAAATGGTTGGAGAA+TGG | - | chr3.4:91252988-91253007 | None:intergenic | 35.0% | |
| GGTGATGAAACAAATGATTC+TGG | - | chr3.4:91253414-91253433 | None:intergenic | 35.0% | |
| GTCTTCCATCAAACTATGAA+GGG | + | chr3.4:91253595-91253614 | MS.gene37447:CDS | 35.0% | |
| TACAAAGCTGAGTTCTGTAA+CGG | - | chr3.4:91253311-91253330 | None:intergenic | 35.0% | |
| TATTGTGTTGTGTTCCATTC+AGG | - | chr3.4:91252955-91252974 | None:intergenic | 35.0% | |
| TCTGTTGAGAAAACATGGAT+TGG | - | chr3.4:91253060-91253079 | None:intergenic | 35.0% | |
| TCTTCCATCAAACTATGAAG+GGG | + | chr3.4:91253596-91253615 | MS.gene37447:CDS | 35.0% | |
| TGAATTCGAACATTCGGAAT+TGG | - | chr3.4:91253083-91253102 | None:intergenic | 35.0% | |
| ! | ATTGGTCTGTTGAGAAAACA+TGG | - | chr3.4:91253065-91253084 | None:intergenic | 35.0% |
| ! | TGTTCCATTCAGGGATTTTA+AGG | - | chr3.4:91252945-91252964 | None:intergenic | 35.0% |
| !! | CGGAGTAGTTGTATTTTTGA+GGG | - | chr3.4:91253191-91253210 | None:intergenic | 35.0% |
| !!! | CATTCAGGGATTTTAAGGTT+TGG | - | chr3.4:91252940-91252959 | None:intergenic | 35.0% |
| AAAGTGGCAAGAATCACCTT+TGG | - | chr3.4:91253253-91253272 | None:intergenic | 40.0% | |
| AAAGTTCGAAAATGCCAACG+TGG | + | chr3.4:91253102-91253121 | MS.gene37447:CDS | 40.0% | |
| AAATTAGGACACTGCACCAA+AGG | + | chr3.4:91253234-91253253 | MS.gene37447:CDS | 40.0% | |
| ACAAAGCTGAGTTCTGTAAC+GGG | - | chr3.4:91253310-91253329 | None:intergenic | 40.0% | |
| ATGGAACACAACACAATACG+AGG | + | chr3.4:91252957-91252976 | MS.gene37447:CDS | 40.0% | |
| CAAAAACACCATGAGCAAAG+TGG | - | chr3.4:91253269-91253288 | None:intergenic | 40.0% | |
| GAAACCCCTTCATAGTTTGA+TGG | - | chr3.4:91253603-91253622 | None:intergenic | 40.0% | |
| GGAGAATCAAGAACTGAAGT+AGG | - | chr3.4:91253435-91253454 | None:intergenic | 40.0% | |
| GGTAGATTGAACTCAAACGA+TGG | + | chr3.4:91253678-91253697 | MS.gene37447:CDS | 40.0% | |
| ! | AGAACTCAGCTTTGTAACGA+CGG | + | chr3.4:91253315-91253334 | MS.gene37447:CDS | 40.0% |
| ! | GTGAAGCGTTATTTGAGACA+CGG | - | chr3.4:91253392-91253411 | None:intergenic | 40.0% |
| ! | TGTCCTAATTTGCGAAACTC+CGG | - | chr3.4:91253225-91253244 | None:intergenic | 40.0% |
| !! | CCGGAGTAGTTGTATTTTTG+AGG | - | chr3.4:91253192-91253211 | None:intergenic | 40.0% |
| !! | CTCAAACGATGGTGTTGTTT+CGG | + | chr3.4:91253689-91253708 | MS.gene37447:CDS | 40.0% |
| !! | CTCATGGTGTTTTTGAATGC+TGG | + | chr3.4:91253274-91253293 | MS.gene37447:CDS | 40.0% |
| !! | TGTATTTTTGAGGGTCTCTC+CGG | - | chr3.4:91253182-91253201 | None:intergenic | 40.0% |
| ACTAATTCCCTCACGTTCAC+CGG | - | chr3.4:91253486-91253505 | None:intergenic | 45.0% | |
| AGACTCAAAAAACCACCTGG+TGG | - | chr3.4:91253579-91253598 | None:intergenic | 45.0% | |
| ATGAAGGGGTTTCTATGGAG+AGG | + | chr3.4:91253610-91253629 | MS.gene37447:CDS | 45.0% | |
| GATTGTCCATACTCTCATCC+CGG | + | chr3.4:91253144-91253163 | MS.gene37447:CDS | 45.0% | |
| GGAAGACTCAAAAAACCACC+TGG | - | chr3.4:91253582-91253601 | None:intergenic | 45.0% | |
| GTGAACGTGAGGGAATTAGT+TGG | + | chr3.4:91253486-91253505 | MS.gene37447:CDS | 45.0% | |
| TGAAGGGGTTTCTATGGAGA+GGG | + | chr3.4:91253611-91253630 | MS.gene37447:CDS | 45.0% | |
| TTCGAAAATGCCAACGTGGT+AGG | + | chr3.4:91253106-91253125 | MS.gene37447:CDS | 45.0% | |
| ! | ACAGAACCCATCTGAGATAC+CGG | - | chr3.4:91253546-91253565 | None:intergenic | 45.0% |
| ! | GGGAATTAGTTGGCTTCATG+AGG | + | chr3.4:91253496-91253515 | MS.gene37447:CDS | 45.0% |
| ! | GTCCTAATTTGCGAAACTCC+GGG | - | chr3.4:91253224-91253243 | None:intergenic | 45.0% |
| ! | TCTCAGATGGGTTCTGTGTT+TGG | + | chr3.4:91253549-91253568 | MS.gene37447:CDS | 45.0% |
| !! | GATTCTTGCCACTTTGCTCA+TGG | + | chr3.4:91253258-91253277 | MS.gene37447:CDS | 45.0% |
| !! | GGAGTGTTAGGGTTGATGAA+TGG | + | chr3.4:91253517-91253536 | MS.gene37447:CDS | 45.0% |
| !! | TAGGGTTGATGAATGGAGTC+CGG | + | chr3.4:91253524-91253543 | MS.gene37447:CDS | 45.0% |
| !! | TGGCTTCATGAGGAGTGTTA+GGG | + | chr3.4:91253506-91253525 | MS.gene37447:CDS | 45.0% |
| !! | TTGGCTTCATGAGGAGTGTT+AGG | + | chr3.4:91253505-91253524 | MS.gene37447:CDS | 45.0% |
| AACGTGGTAGGTCTCATGAC+TGG | + | chr3.4:91253118-91253137 | MS.gene37447:CDS | 50.0% | |
| AATTTGCGAAACTCCGGGCA+AGG | - | chr3.4:91253219-91253238 | None:intergenic | 50.0% | |
| ACACCGTATCGAGGTTTCCT+CGG | - | chr3.4:91253459-91253478 | None:intergenic | 50.0% | |
| ACCCATCCAATATCAGGGAC+AGG | - | chr3.4:91253717-91253736 | None:intergenic | 50.0% | |
| AGTCATGAGACCTACCACGT+TGG | - | chr3.4:91253119-91253138 | None:intergenic | 50.0% | |
| ATGGAGTCCGGTATCTCAGA+TGG | + | chr3.4:91253536-91253555 | MS.gene37447:CDS | 50.0% | |
| CAAAGAAGCAAACTCGTCGC+CGG | - | chr3.4:91253350-91253369 | None:intergenic | 50.0% | |
| CAGTTCTTGATTCTCCTCCG+AGG | + | chr3.4:91253439-91253458 | MS.gene37447:CDS | 50.0% | |
| CCCATCCAATATCAGGGACA+GGG | - | chr3.4:91253716-91253735 | None:intergenic | 50.0% | |
| CCCTGTCCCTGATATTGGAT+GGG | + | chr3.4:91253713-91253732 | MS.gene37447:CDS | 50.0% | |
| CCGCAACCCATCCAATATCA+GGG | - | chr3.4:91253722-91253741 | None:intergenic | 50.0% | |
| TCCCTGTCCCTGATATTGGA+TGG | + | chr3.4:91253712-91253731 | MS.gene37447:CDS | 50.0% | |
| TCCGCAACCCATCCAATATC+AGG | - | chr3.4:91253723-91253742 | None:intergenic | 50.0% | |
| TCTATGGAGAGGGTGGAATC+AGG | + | chr3.4:91253621-91253640 | MS.gene37447:CDS | 50.0% | |
| TGCCCGGAGTTTCGCAAATT+AGG | + | chr3.4:91253219-91253238 | MS.gene37447:CDS | 50.0% | |
| TGGAGTCCGGTATCTCAGAT+GGG | + | chr3.4:91253537-91253556 | MS.gene37447:CDS | 50.0% | |
| TGGTAGGTCTCATGACTGGA+CGG | + | chr3.4:91253122-91253141 | MS.gene37447:CDS | 50.0% | |
| ! | AGCTGAGTTCTGTAACGGGA+AGG | - | chr3.4:91253306-91253325 | None:intergenic | 50.0% |
| ! | TTTTCGCCGGGATGAGAGTA+TGG | - | chr3.4:91253153-91253172 | None:intergenic | 50.0% |
| !! | CCCTGATATTGGATGGGTTG+CGG | + | chr3.4:91253719-91253738 | MS.gene37447:CDS | 50.0% |
| !! | TCTGTGTTTGGTTCTCCACC+AGG | + | chr3.4:91253561-91253580 | MS.gene37447:CDS | 50.0% |
| AAACTCCGGGCAAGGATTGC+CGG | - | chr3.4:91253211-91253230 | None:intergenic | 55.0% | |
| AATTCCCTCACGTTCACCGG+AGG | - | chr3.4:91253483-91253502 | None:intergenic | 55.0% | |
| AGGGGTTTCTATGGAGAGGG+TGG | + | chr3.4:91253614-91253633 | MS.gene37447:CDS | 55.0% | |
| ATTCCCTCACGTTCACCGGA+GGG | - | chr3.4:91253482-91253501 | None:intergenic | 55.0% | |
| CCTCCGAGGAAACCTCGATA+CGG | + | chr3.4:91253453-91253472 | MS.gene37447:CDS | 55.0% | |
| GTAACGACGGAACCCTTTGC+CGG | + | chr3.4:91253328-91253347 | MS.gene37447:CDS | 55.0% | |
| TCGGTCCCTGTCCCTGATAT+TGG | + | chr3.4:91253708-91253727 | MS.gene37447:CDS | 55.0% | |
| !! | GTGTTTGGTTCTCCACCAGG+TGG | + | chr3.4:91253564-91253583 | MS.gene37447:CDS | 55.0% |
| ACCTCGATACGGTGTCCCTC+CGG | + | chr3.4:91253464-91253483 | MS.gene37447:CDS | 60.0% | |
| AGCAAACTCGTCGCCGGCAA+AGG | - | chr3.4:91253344-91253363 | None:intergenic | 60.0% | |
| ATCCCGGCGAAAAAGCTCGC+CGG | + | chr3.4:91253160-91253179 | MS.gene37447:CDS | 60.0% | |
| CCGTATCGAGGTTTCCTCGG+AGG | - | chr3.4:91253456-91253475 | None:intergenic | 60.0% | |
| CTACTCCGGCAATCCTTGCC+CGG | + | chr3.4:91253203-91253222 | MS.gene37447:CDS | 60.0% | |
| GCAAACTCGTCGCCGGCAAA+GGG | - | chr3.4:91253343-91253362 | None:intergenic | 60.0% | |
| TGTCCCTCCGGTGAACGTGA+GGG | + | chr3.4:91253476-91253495 | MS.gene37447:CDS | 60.0% | |
| !!! | TCTCCGGCGAGCTTTTTCGC+CGG | - | chr3.4:91253166-91253185 | None:intergenic | 60.0% |
| ACCGGAGGGACACCGTATCG+AGG | - | chr3.4:91253468-91253487 | None:intergenic | 65.0% | |
| GTGTCCCTCCGGTGAACGTG+AGG | + | chr3.4:91253475-91253494 | MS.gene37447:CDS | 65.0% | |
| !!! | CTCCGGCGAGCTTTTTCGCC+GGG | - | chr3.4:91253165-91253184 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 91252925 | 91253755 | 91252925 | ID=MS.gene37447 |
| chr3.4 | mRNA | 91252925 | 91253755 | 91252925 | ID=MS.gene37447.t1;Parent=MS.gene37447 |
| chr3.4 | exon | 91252925 | 91253755 | 91252925 | ID=MS.gene37447.t1.exon1;Parent=MS.gene37447.t1 |
| chr3.4 | CDS | 91252925 | 91253755 | 91252925 | ID=cds.MS.gene37447.t1;Parent=MS.gene37447.t1 |
| Gene Sequence |
| Protein sequence |
