Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37641.t1 | AFK46072.1 | 84.9 | 325 | 13 | 1 | 1 | 289 | 1 | 325 | 3.30E-149 | 537.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37641.t1 | Q9SAH9 | 41.5 | 318 | 139 | 5 | 11 | 287 | 6 | 317 | 2.7e-59 | 230.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37641.t1 | I3T0N0 | 84.9 | 325 | 13 | 1 | 1 | 289 | 1 | 325 | 2.4e-149 | 537.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene96654 | MS.gene37641 | PPI |
MS.gene37641 | MS.gene65685 | PPI |
MS.gene37641 | MS.gene053809 | PPI |
MS.gene37641 | MS.gene63037 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37641.t1 | MTR_4g009690 | 84.923 | 325 | 14 | 1 | 1 | 290 | 1 | 325 | 0.0 | 550 |
MS.gene37641.t1 | MTR_4g009690 | 84.663 | 326 | 14 | 1 | 1 | 290 | 1 | 326 | 0.0 | 550 |
MS.gene37641.t1 | MTR_4g009040 | 84.923 | 325 | 13 | 1 | 1 | 289 | 1 | 325 | 0.0 | 550 |
MS.gene37641.t1 | MTR_4g009040 | 83.891 | 329 | 13 | 2 | 1 | 289 | 1 | 329 | 0.0 | 545 |
MS.gene37641.t1 | MTR_4g006940 | 43.827 | 324 | 134 | 6 | 4 | 287 | 11 | 326 | 4.36e-78 | 241 |
MS.gene37641.t1 | MTR_2g104960 | 43.175 | 315 | 134 | 4 | 13 | 287 | 20 | 329 | 5.16e-76 | 235 |
MS.gene37641.t1 | MTR_4g006940 | 46.520 | 273 | 102 | 5 | 4 | 240 | 11 | 275 | 1.16e-70 | 219 |
MS.gene37641.t1 | MTR_4g006940 | 46.520 | 273 | 102 | 5 | 4 | 240 | 11 | 275 | 1.16e-70 | 219 |
MS.gene37641.t1 | MTR_2g101330 | 38.679 | 318 | 155 | 5 | 12 | 289 | 4 | 321 | 9.80e-65 | 206 |
MS.gene37641.t1 | MTR_5g072620 | 37.618 | 319 | 155 | 4 | 11 | 287 | 3 | 319 | 1.05e-64 | 206 |
MS.gene37641.t1 | MTR_8g062440 | 39.185 | 319 | 149 | 8 | 11 | 287 | 6 | 321 | 2.30e-60 | 195 |
MS.gene37641.t1 | MTR_3g005170 | 38.217 | 314 | 148 | 8 | 13 | 283 | 10 | 320 | 1.37e-59 | 193 |
MS.gene37641.t1 | MTR_8g062440 | 39.375 | 320 | 148 | 9 | 11 | 287 | 6 | 322 | 1.66e-59 | 192 |
MS.gene37641.t1 | MTR_4g077100 | 38.801 | 317 | 146 | 10 | 11 | 283 | 9 | 321 | 4.75e-59 | 191 |
MS.gene37641.t1 | MTR_8g062110 | 38.730 | 315 | 148 | 8 | 11 | 283 | 7 | 318 | 3.96e-58 | 189 |
MS.gene37641.t1 | MTR_4g077130 | 39.024 | 328 | 146 | 11 | 1 | 283 | 1 | 319 | 4.49e-58 | 189 |
MS.gene37641.t1 | MTR_8g062110 | 38.730 | 315 | 148 | 8 | 11 | 283 | 16 | 327 | 4.90e-58 | 189 |
MS.gene37641.t1 | MTR_3g031650 | 35.110 | 319 | 163 | 4 | 11 | 287 | 3 | 319 | 7.66e-58 | 188 |
MS.gene37641.t1 | MTR_3g005210 | 37.736 | 318 | 152 | 8 | 9 | 283 | 2 | 316 | 1.01e-57 | 188 |
MS.gene37641.t1 | MTR_2g028620 | 36.810 | 326 | 158 | 9 | 8 | 288 | 5 | 327 | 5.32e-57 | 186 |
MS.gene37641.t1 | MTR_4g077100 | 39.852 | 271 | 120 | 8 | 11 | 241 | 9 | 276 | 1.45e-53 | 176 |
MS.gene37641.t1 | MTR_3g005170 | 39.033 | 269 | 121 | 7 | 13 | 241 | 10 | 275 | 2.93e-53 | 175 |
MS.gene37641.t1 | MTR_8g062440 | 40.602 | 266 | 118 | 6 | 11 | 238 | 6 | 269 | 9.28e-53 | 175 |
MS.gene37641.t1 | MTR_2g028620 | 37.374 | 297 | 135 | 7 | 8 | 255 | 5 | 299 | 3.46e-52 | 173 |
MS.gene37641.t1 | MTR_5g056600 | 33.333 | 318 | 165 | 6 | 14 | 287 | 5 | 319 | 5.73e-52 | 173 |
MS.gene37641.t1 | MTR_3g031650 | 35.206 | 267 | 136 | 2 | 11 | 240 | 3 | 269 | 2.14e-51 | 170 |
MS.gene37641.t1 | MTR_8g062110 | 37.544 | 285 | 131 | 7 | 11 | 257 | 7 | 282 | 2.76e-51 | 170 |
MS.gene37641.t1 | MTR_8g062110 | 38.662 | 269 | 125 | 6 | 11 | 241 | 7 | 273 | 4.28e-51 | 169 |
MS.gene37641.t1 | MTR_1g022440 | 33.956 | 321 | 163 | 10 | 13 | 287 | 8 | 325 | 9.23e-51 | 170 |
MS.gene37641.t1 | MTR_3g005170 | 34.395 | 314 | 129 | 8 | 13 | 283 | 10 | 289 | 1.70e-47 | 160 |
MS.gene37641.t1 | MTR_1g022445 | 32.710 | 321 | 167 | 9 | 13 | 287 | 8 | 325 | 2.30e-47 | 161 |
MS.gene37641.t1 | MTR_8g062710 | 75.000 | 96 | 14 | 1 | 10 | 105 | 17 | 102 | 1.11e-41 | 140 |
MS.gene37641.t1 | MTR_4g092080 | 33.735 | 332 | 160 | 11 | 10 | 286 | 11 | 337 | 3.14e-41 | 145 |
MS.gene37641.t1 | MTR_0164s0070 | 37.395 | 238 | 90 | 4 | 12 | 242 | 4 | 189 | 5.71e-41 | 141 |
MS.gene37641.t1 | MTR_4g081440 | 31.503 | 346 | 178 | 10 | 1 | 289 | 8 | 351 | 5.82e-40 | 142 |
MS.gene37641.t1 | MTR_4g081440 | 31.412 | 347 | 178 | 10 | 1 | 289 | 12 | 356 | 1.12e-39 | 142 |
MS.gene37641.t1 | MTR_7g074710 | 32.012 | 328 | 169 | 12 | 9 | 287 | 4 | 326 | 1.44e-38 | 138 |
MS.gene37641.t1 | MTR_4g023730 | 33.033 | 333 | 164 | 12 | 8 | 287 | 3 | 329 | 2.11e-38 | 138 |
MS.gene37641.t1 | MTR_7g074730 | 31.193 | 327 | 173 | 9 | 10 | 287 | 5 | 328 | 3.39e-38 | 137 |
MS.gene37641.t1 | MTR_7g074820 | 32.523 | 329 | 169 | 10 | 9 | 287 | 4 | 329 | 3.58e-38 | 137 |
MS.gene37641.t1 | MTR_7g074880 | 30.982 | 326 | 175 | 9 | 9 | 287 | 4 | 326 | 3.88e-38 | 137 |
MS.gene37641.t1 | MTR_7g074850 | 29.787 | 329 | 178 | 9 | 9 | 287 | 4 | 329 | 5.91e-35 | 129 |
MS.gene37641.t1 | MTR_5g029990 | 30.000 | 300 | 150 | 9 | 13 | 267 | 12 | 296 | 2.01e-28 | 110 |
MS.gene37641.t1 | MTR_8g062708 | 83.929 | 56 | 9 | 0 | 189 | 244 | 12 | 67 | 7.59e-25 | 96.7 |
MS.gene37641.t1 | MTR_7g074870 | 28.826 | 281 | 152 | 8 | 52 | 287 | 11 | 288 | 3.63e-23 | 96.7 |
MS.gene37641.t1 | MTR_2g013230 | 34.054 | 185 | 103 | 7 | 7 | 178 | 2 | 180 | 2.75e-20 | 89.7 |
MS.gene37641.t1 | MTR_6g406250 | 28.137 | 263 | 150 | 4 | 10 | 233 | 52 | 314 | 3.83e-20 | 89.4 |
MS.gene37641.t1 | MTR_7g117190 | 36.667 | 150 | 84 | 6 | 12 | 154 | 6 | 151 | 1.08e-19 | 87.8 |
MS.gene37641.t1 | MTR_7g117190 | 36.667 | 150 | 84 | 6 | 12 | 154 | 6 | 151 | 1.19e-19 | 87.4 |
MS.gene37641.t1 | MTR_2g013260 | 37.821 | 156 | 84 | 7 | 7 | 154 | 2 | 152 | 1.30e-19 | 87.8 |
MS.gene37641.t1 | MTR_2g013260 | 37.821 | 156 | 84 | 7 | 7 | 154 | 2 | 152 | 1.35e-19 | 87.0 |
MS.gene37641.t1 | MTR_2g013250 | 35.870 | 184 | 101 | 8 | 7 | 178 | 1 | 179 | 3.47e-19 | 86.7 |
MS.gene37641.t1 | MTR_6g406250 | 31.148 | 183 | 122 | 2 | 10 | 188 | 52 | 234 | 5.00e-19 | 84.7 |
MS.gene37641.t1 | MTR_8g062110 | 29.213 | 178 | 88 | 4 | 101 | 241 | 11 | 187 | 2.56e-17 | 78.6 |
MS.gene37641.t1 | MTR_4g077150 | 34.483 | 145 | 76 | 6 | 103 | 245 | 21 | 148 | 3.59e-15 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37641.t1 | AT2G33590 | 57.278 | 316 | 98 | 1 | 9 | 287 | 5 | 320 | 1.90e-125 | 360 |
MS.gene37641.t1 | AT2G33600 | 54.859 | 319 | 107 | 1 | 6 | 287 | 2 | 320 | 3.29e-113 | 330 |
MS.gene37641.t1 | AT1G76470 | 50.470 | 319 | 117 | 4 | 10 | 287 | 4 | 322 | 6.28e-93 | 278 |
MS.gene37641.t1 | AT1G80820 | 40.752 | 319 | 144 | 4 | 9 | 287 | 4 | 317 | 2.33e-74 | 231 |
MS.gene37641.t1 | AT1G15950 | 40.063 | 317 | 145 | 5 | 11 | 287 | 11 | 322 | 1.34e-70 | 222 |
MS.gene37641.t1 | AT1G15950 | 40.063 | 317 | 145 | 5 | 11 | 287 | 11 | 322 | 1.34e-70 | 222 |
MS.gene37641.t1 | AT1G09510 | 42.236 | 322 | 142 | 7 | 8 | 287 | 3 | 322 | 3.62e-68 | 215 |
MS.gene37641.t1 | AT1G80820 | 43.382 | 272 | 113 | 3 | 9 | 244 | 4 | 270 | 3.69e-67 | 211 |
MS.gene37641.t1 | AT1G15950 | 39.739 | 307 | 140 | 5 | 11 | 277 | 11 | 312 | 4.73e-67 | 212 |
MS.gene37641.t1 | AT1G15950 | 42.545 | 275 | 117 | 4 | 11 | 249 | 11 | 280 | 1.97e-66 | 209 |
MS.gene37641.t1 | AT1G15950 | 43.015 | 272 | 114 | 4 | 11 | 246 | 11 | 277 | 3.11e-66 | 209 |
MS.gene37641.t1 | AT1G15950 | 42.963 | 270 | 113 | 4 | 11 | 244 | 11 | 275 | 2.84e-65 | 206 |
MS.gene37641.t1 | AT1G51410 | 40.557 | 323 | 144 | 9 | 10 | 288 | 6 | 324 | 1.96e-64 | 205 |
MS.gene37641.t1 | AT4G35420 | 38.199 | 322 | 154 | 7 | 10 | 289 | 5 | 323 | 2.17e-62 | 200 |
MS.gene37641.t1 | AT5G19440 | 39.564 | 321 | 148 | 8 | 11 | 288 | 8 | 325 | 2.64e-62 | 200 |
MS.gene37641.t1 | AT1G66800 | 41.066 | 319 | 140 | 9 | 11 | 287 | 6 | 318 | 2.02e-61 | 197 |
MS.gene37641.t1 | AT1G09490 | 38.050 | 318 | 155 | 6 | 11 | 287 | 6 | 322 | 3.23e-61 | 197 |
MS.gene37641.t1 | AT5G58490 | 37.188 | 320 | 161 | 3 | 8 | 287 | 4 | 323 | 3.17e-60 | 194 |
MS.gene37641.t1 | AT1G09480 | 38.994 | 318 | 152 | 6 | 11 | 287 | 6 | 322 | 9.50e-60 | 193 |
MS.gene37641.t1 | AT1G09480 | 38.994 | 318 | 152 | 6 | 11 | 287 | 53 | 369 | 2.13e-59 | 194 |
MS.gene37641.t1 | AT2G02400 | 33.750 | 320 | 166 | 7 | 10 | 287 | 3 | 318 | 5.13e-58 | 189 |
MS.gene37641.t1 | AT1G09500 | 38.006 | 321 | 154 | 8 | 11 | 287 | 6 | 325 | 3.35e-56 | 184 |
MS.gene37641.t1 | AT1G09500 | 39.925 | 268 | 121 | 5 | 11 | 239 | 6 | 272 | 1.36e-52 | 173 |
MS.gene37641.t1 | AT5G42800 | 35.780 | 327 | 161 | 9 | 7 | 287 | 2 | 325 | 6.87e-52 | 174 |
MS.gene37641.t1 | AT1G09490 | 35.000 | 280 | 141 | 5 | 48 | 287 | 13 | 291 | 1.27e-44 | 153 |
MS.gene37641.t1 | AT1G68540 | 30.696 | 316 | 176 | 5 | 15 | 287 | 6 | 321 | 6.20e-40 | 142 |
MS.gene37641.t1 | AT1G09500 | 35.336 | 283 | 139 | 7 | 48 | 287 | 10 | 291 | 1.30e-39 | 140 |
MS.gene37641.t1 | AT1G25460 | 31.429 | 315 | 173 | 6 | 15 | 287 | 6 | 319 | 3.76e-39 | 139 |
MS.gene37641.t1 | AT1G61720 | 32.024 | 331 | 171 | 11 | 11 | 289 | 11 | 339 | 4.45e-38 | 137 |
MS.gene37641.t1 | AT2G45400 | 32.628 | 331 | 161 | 11 | 13 | 287 | 40 | 364 | 1.46e-37 | 136 |
MS.gene37641.t1 | AT4G27250 | 31.402 | 328 | 169 | 10 | 1 | 276 | 1 | 324 | 5.12e-37 | 134 |
MS.gene37641.t1 | AT4G27250 | 30.473 | 338 | 169 | 10 | 1 | 276 | 1 | 334 | 2.07e-35 | 130 |
MS.gene37641.t1 | AT1G15950 | 33.482 | 224 | 109 | 3 | 104 | 287 | 1 | 224 | 2.18e-33 | 122 |
MS.gene37641.t1 | AT2G23910 | 29.496 | 278 | 142 | 7 | 7 | 238 | 1 | 270 | 4.67e-32 | 120 |
MS.gene37641.t1 | AT2G23910 | 29.496 | 278 | 142 | 7 | 7 | 238 | 1 | 270 | 5.15e-32 | 120 |
MS.gene37641.t1 | AT2G23910 | 28.525 | 305 | 162 | 8 | 7 | 263 | 1 | 297 | 5.31e-32 | 120 |
MS.gene37641.t1 | AT2G45400 | 32.975 | 279 | 133 | 8 | 13 | 241 | 40 | 314 | 5.37e-32 | 121 |
MS.gene37641.t1 | AT2G45400 | 40.212 | 189 | 96 | 6 | 13 | 188 | 40 | 224 | 5.48e-29 | 111 |
MS.gene37641.t1 | AT4G30470 | 29.963 | 267 | 137 | 6 | 14 | 238 | 11 | 269 | 6.34e-29 | 112 |
MS.gene37641.t1 | AT2G45400 | 29.841 | 315 | 159 | 12 | 27 | 287 | 1 | 307 | 7.71e-26 | 104 |
MS.gene37641.t1 | AT2G23910 | 27.801 | 241 | 124 | 5 | 50 | 248 | 14 | 246 | 5.54e-22 | 93.2 |
MS.gene37641.t1 | AT5G14700 | 29.213 | 267 | 140 | 8 | 13 | 233 | 55 | 318 | 4.78e-17 | 80.9 |
MS.gene37641.t1 | AT5G14700 | 31.720 | 186 | 115 | 5 | 13 | 188 | 55 | 238 | 3.22e-15 | 74.7 |
Find 62 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATCAATCGCTTTATCTTT+TGG | 0.244785 | 4.2:-90651687 | None:intergenic |
CTCAGAGAAACTGCAAAGTT+TGG | 0.267800 | 4.2:+90653146 | MS.gene37641:CDS |
TTCAGCAAGTGTTCATATTT+CGG | 0.273006 | 4.2:-90651192 | None:intergenic |
AAGAAGAAGGTGTGTGTAAC+TGG | 0.304763 | 4.2:+90649897 | MS.gene37641:CDS |
ATATGAACACTTGCTGAAAC+TGG | 0.323661 | 4.2:+90651197 | MS.gene37641:CDS |
CACTATCGTCACACGAGATT+TGG | 0.336161 | 4.2:+90652560 | MS.gene37641:CDS |
CTGTTCTTCTGCTTCTGTCT+TGG | 0.343397 | 4.2:-90651898 | None:intergenic |
AAAGTTTGGGTTGGAAATTC+AGG | 0.345192 | 4.2:+90653160 | MS.gene37641:CDS |
CTTCGTATGGTACTTGTAGT+TGG | 0.352333 | 4.2:-90652607 | None:intergenic |
ACTCTTCAAAGCAGATATCT+TGG | 0.353367 | 4.2:+90651242 | MS.gene37641:CDS |
CTGGATTTCGCGAAAAGAAC+TGG | 0.363819 | 4.2:+90651924 | MS.gene37641:CDS |
CAAGACAGAAGCAGAAGAAC+AGG | 0.371007 | 4.2:+90651899 | MS.gene37641:CDS |
CGTAGTTGATGCAATACTAT+TGG | 0.378535 | 4.2:+90652491 | MS.gene37641:CDS |
AGAAACATTACCTCAGGATT+AGG | 0.383683 | 4.2:-90651345 | None:intergenic |
TCCGTTTACTCCGCAATTGT+TGG | 0.399978 | 4.2:+90651273 | MS.gene37641:CDS |
TCAGAGAAACTGCAAAGTTT+GGG | 0.410030 | 4.2:+90653147 | MS.gene37641:CDS |
TCCATGGACAAAGTAACCTT+TGG | 0.412376 | 4.2:-90649964 | None:intergenic |
TCCAACAATTGCGGAGTAAA+CGG | 0.413187 | 4.2:-90651274 | None:intergenic |
TGACTCTGTTGAGAGCTATA+AGG | 0.425631 | 4.2:+90653203 | MS.gene37641:CDS |
TTCGTATGGTACTTGTAGTT+GGG | 0.426034 | 4.2:-90652606 | None:intergenic |
AAGCGATTGATGAGTCTTGT+TGG | 0.452091 | 4.2:+90651697 | MS.gene37641:CDS |
CATTGGAGAATAAGTTTCGT+TGG | 0.455684 | 4.2:+90652451 | MS.gene37641:intron |
TATCTGCTTTGAAGAGTGTA+AGG | 0.460836 | 4.2:-90651236 | None:intergenic |
CATGGAACTGTTAGAGAGCC+TGG | 0.466759 | 4.2:+90649981 | MS.gene37641:CDS |
TCCAAAGGTTACTTTGTCCA+TGG | 0.474794 | 4.2:+90649963 | MS.gene37641:CDS |
AGAAGCAGAAGAACAGGCCC+TGG | 0.487109 | 4.2:+90651905 | MS.gene37641:CDS |
GGTACAACTGTTGAAGGTAC+AGG | 0.487565 | 4.2:-90651324 | None:intergenic |
GGAGGCTGGATTACTTCAAT+CGG | 0.490044 | 4.2:+90653224 | MS.gene37641:CDS |
GTGATTGAGCCTGCAGTGAC+GGG | 0.498748 | 4.2:+90651570 | MS.gene37641:CDS |
AAGGTGTGTGTAACTGGAGC+AGG | 0.505575 | 4.2:+90649903 | MS.gene37641:CDS |
CAGGAGGGTTTGTAGCATCA+TGG | 0.506329 | 4.2:+90649922 | MS.gene37641:CDS |
GGATTAGGTACAACTGTTGA+AGG | 0.511645 | 4.2:-90651330 | None:intergenic |
TTAGCAGTTCCCGTCACTGC+AGG | 0.514005 | 4.2:-90651579 | None:intergenic |
AGAAACTGCAAAGTTTGGGT+TGG | 0.515747 | 4.2:+90653151 | MS.gene37641:CDS |
AAACTGAAGCTTACTTCGTA+TGG | 0.515995 | 4.2:-90652620 | None:intergenic |
GGGTTGGAAATTCAGGCCAT+TGG | 0.519755 | 4.2:+90653167 | MS.gene37641:CDS |
TATCGTCACACGAGATTTGG+TGG | 0.521160 | 4.2:+90652563 | MS.gene37641:CDS |
GTTAAGCTTCTTCTTTCCAA+AGG | 0.521805 | 4.2:+90649948 | MS.gene37641:CDS |
GTTGAGAGCTATAAGGAGGC+TGG | 0.522498 | 4.2:+90653210 | MS.gene37641:CDS |
TTGGAAATTCAGGCCATTGG+AGG | 0.526899 | 4.2:+90653170 | MS.gene37641:CDS |
TCAATGAGTGTTTCCTCCAA+TGG | 0.543548 | 4.2:-90653183 | None:intergenic |
AGGAGATAATGGAAACAAGT+GGG | 0.545788 | 4.2:+90649862 | None:intergenic |
CAGGCTCTCTAACAGTTCCA+TGG | 0.553939 | 4.2:-90649980 | None:intergenic |
ATGAGAATCACAAGGCAGGC+GGG | 0.566882 | 4.2:+90652517 | MS.gene37641:CDS |
GTGTGTGTAACTGGAGCAGG+AGG | 0.579894 | 4.2:+90649906 | MS.gene37641:CDS |
GAGGAGATAATGGAAACAAG+TGG | 0.582460 | 4.2:+90649861 | None:intergenic |
AAGGTACAGGGCTAGCAACA+TGG | 0.584108 | 4.2:-90651311 | None:intergenic |
AGTGATTGAGCCTGCAGTGA+CGG | 0.593594 | 4.2:+90651569 | MS.gene37641:CDS |
GCTTATGAGAATCACAAGGC+AGG | 0.595581 | 4.2:+90652513 | MS.gene37641:CDS |
TGCTGGCAGCTATATTGAGA+TGG | 0.610431 | 4.2:+90653104 | MS.gene37641:intron |
GGGTGTTAATAACAAGAAGA+AGG | 0.612023 | 4.2:+90649884 | MS.gene37641:CDS |
TATGAGAATCACAAGGCAGG+CGG | 0.620932 | 4.2:+90652516 | MS.gene37641:CDS |
TGCACTGCATCCAACAATTG+CGG | 0.621267 | 4.2:-90651283 | None:intergenic |
GTACAACTGTTGAAGGTACA+GGG | 0.621515 | 4.2:-90651323 | None:intergenic |
GGAGATAATGGAAACAAGTG+GGG | 0.623500 | 4.2:+90649863 | None:intergenic |
AGCTTGTCTCAAAGCTAATG+TGG | 0.639403 | 4.2:+90651611 | MS.gene37641:CDS |
CTCTGTTGAGAGCTATAAGG+AGG | 0.642841 | 4.2:+90653206 | MS.gene37641:CDS |
GAAAAGAACTGGACTTAACG+TGG | 0.670351 | 4.2:+90651935 | MS.gene37641:CDS |
AACAGTTGTACCTAATCCTG+AGG | 0.672409 | 4.2:+90651335 | MS.gene37641:CDS |
GAGATAATGGAAACAAGTGG+GGG | 0.689150 | 4.2:+90649864 | None:intergenic |
TGTGTGTAACTGGAGCAGGA+GGG | 0.744318 | 4.2:+90649907 | MS.gene37641:CDS |
ATTGGCTTATGAGAATCACA+AGG | 0.744545 | 4.2:+90652509 | MS.gene37641:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATCTTAAATATATATAC+AGG | - | chr4.2:90650663-90650682 | None:intergenic | 10.0% |
!!! | ATGTATTCTTTTTTTTTTTT+TGG | + | chr4.2:90650119-90650138 | MS.gene37641:intron | 10.0% |
!!! | CTAATAATATTTAATTTAAG+TGG | - | chr4.2:90652669-90652688 | None:intergenic | 10.0% |
!!! | TGAAATTTGTTAAATTATAA+TGG | - | chr4.2:90652355-90652374 | None:intergenic | 10.0% |
!!! | TTTTTAATAAGAATTTGATA+AGG | - | chr4.2:90652044-90652063 | None:intergenic | 10.0% |
!! | AAGAATTTCATTATTATACA+TGG | + | chr4.2:90650347-90650366 | MS.gene37641:intron | 15.0% |
!! | ATTATTTACTTTGTCTTATA+AGG | + | chr4.2:90650991-90651010 | MS.gene37641:intron | 15.0% |
!!! | ATTTGAAGTTTTAAGAAATA+TGG | - | chr4.2:90651045-90651064 | None:intergenic | 15.0% |
!!! | TAATATTTAATTTAAGTGGT+TGG | - | chr4.2:90652665-90652684 | None:intergenic | 15.0% |
!! | ATTATACATGGAAAGAAATA+AGG | + | chr4.2:90650359-90650378 | MS.gene37641:intron | 20.0% |
!! | CATAACTTCTATAAAATACT+TGG | + | chr4.2:90652128-90652147 | MS.gene37641:intron | 20.0% |
!! | CTTATTTAACACAAAATTCT+TGG | - | chr4.2:90651839-90651858 | None:intergenic | 20.0% |
!! | TATCATTATCATGTAAAACA+AGG | - | chr4.2:90652104-90652123 | None:intergenic | 20.0% |
!!! | AGTATTTTATAGAAGTTATG+TGG | - | chr4.2:90652128-90652147 | None:intergenic | 20.0% |
!!! | ATTTGTTAAATTATAATGGC+AGG | - | chr4.2:90652351-90652370 | None:intergenic | 20.0% |
!!! | CTTTATCTTTTGGTAAATTA+GGG | - | chr4.2:90651680-90651699 | None:intergenic | 20.0% |
!!! | GTTCTCATCAAAATTTTAAA+AGG | + | chr4.2:90652004-90652023 | MS.gene37641:intron | 20.0% |
!!! | TGATACATACTTCAATTTTA+GGG | + | chr4.2:90650443-90650462 | MS.gene37641:intron | 20.0% |
!!! | TTGATACATACTTCAATTTT+AGG | + | chr4.2:90650442-90650461 | MS.gene37641:intron | 20.0% |
! | AATTATTAATATGCCCTTCA+TGG | + | chr4.2:90652299-90652318 | MS.gene37641:intron | 25.0% |
! | ACATGTTTACTAGAATTTGT+AGG | - | chr4.2:90650915-90650934 | None:intergenic | 25.0% |
! | ACTGTTAATGTCAAAAACAT+AGG | + | chr4.2:90650607-90650626 | MS.gene37641:intron | 25.0% |
! | ATAGAAGTCATTAATTAGTG+AGG | + | chr4.2:90652768-90652787 | MS.gene37641:intron | 25.0% |
! | ATTATTAATATGCCCTTCAT+GGG | + | chr4.2:90652300-90652319 | MS.gene37641:intron | 25.0% |
! | CCAATGACAATTTGAAAAAA+CGG | - | chr4.2:90652989-90653008 | None:intergenic | 25.0% |
! | GTAAGAAATGTGAAAGATAA+GGG | + | chr4.2:90652723-90652742 | MS.gene37641:intron | 25.0% |
! | TCAAAAGAATGAAAGAATAG+AGG | - | chr4.2:90651117-90651136 | None:intergenic | 25.0% |
! | TGTAAGAAATGTGAAAGATA+AGG | + | chr4.2:90652722-90652741 | MS.gene37641:intron | 25.0% |
! | TTCATCTTGTCTTTATTAGA+AGG | + | chr4.2:90652420-90652439 | MS.gene37641:intron | 25.0% |
! | TTTGTATAGAATTGTAGAAG+AGG | + | chr4.2:90651080-90651099 | MS.gene37641:intron | 25.0% |
!! | GCTTTATCTTTTGGTAAATT+AGG | - | chr4.2:90651681-90651700 | None:intergenic | 25.0% |
!! | TATGTTAAAGTTTTCATTGC+TGG | + | chr4.2:90653087-90653106 | MS.gene37641:intron | 25.0% |
!! | TCTATTCTTTCATTCTTTTG+AGG | + | chr4.2:90651116-90651135 | MS.gene37641:intron | 25.0% |
!!! | TCATTTAGACAATTAGCTTT+TGG | - | chr4.2:90650488-90650507 | None:intergenic | 25.0% |
!!! | TTCAATTTTAGGGACTAAAA+TGG | + | chr4.2:90650453-90650472 | MS.gene37641:intron | 25.0% |
!!! | TTTTAGCCTTTATAAGTGTA+TGG | + | chr4.2:90652191-90652210 | MS.gene37641:intron | 25.0% |
AACATTAGAAACATTACCTC+AGG | - | chr4.2:90651354-90651373 | None:intergenic | 30.0% | |
ACTTGCTTGTATAGATTTGA+TGG | + | chr4.2:90653055-90653074 | MS.gene37641:intron | 30.0% | |
AGACTACTGCAAAAATACTA+AGG | + | chr4.2:90651728-90651747 | MS.gene37641:CDS | 30.0% | |
ATGGAAAGAAATAAGGCTTA+AGG | + | chr4.2:90650366-90650385 | MS.gene37641:intron | 30.0% | |
ATTTGATAAGGCGTATTAGT+AGG | - | chr4.2:90652032-90652051 | None:intergenic | 30.0% | |
GATTCATTTGATGTGTATGT+CGG | + | chr4.2:90651154-90651173 | MS.gene37641:intron | 30.0% | |
TCAAATCTATACAAGCAAGT+AGG | - | chr4.2:90653055-90653074 | None:intergenic | 30.0% | |
TCTCTACTAGAATAACAAGT+TGG | + | chr4.2:90650885-90650904 | MS.gene37641:intron | 30.0% | |
TTATTAATATGCCCTTCATG+GGG | + | chr4.2:90652301-90652320 | MS.gene37641:intron | 30.0% | |
TTCAGCAAGTGTTCATATTT+CGG | - | chr4.2:90651195-90651214 | None:intergenic | 30.0% | |
TTTGTGGTTGACTGTAAAAT+TGG | - | chr4.2:90651971-90651990 | None:intergenic | 30.0% | |
! | TCATCAATCGCTTTATCTTT+TGG | - | chr4.2:90651690-90651709 | None:intergenic | 30.0% |
!! | AACTTGTTATTCTAGTAGAG+AGG | - | chr4.2:90650886-90650905 | None:intergenic | 30.0% |
!!! | CCGTTTTTTCAAATTGTCAT+TGG | + | chr4.2:90652986-90653005 | MS.gene37641:intron | 30.0% |
!!! | TGTCACTTCATACTTTTTCA+TGG | - | chr4.2:90651516-90651535 | None:intergenic | 30.0% |
AAACTGAAGCTTACTTCGTA+TGG | - | chr4.2:90652623-90652642 | None:intergenic | 35.0% | |
AACCAAGCTACTTGAATTTG+TGG | - | chr4.2:90651987-90652006 | None:intergenic | 35.0% | |
AACCACAAATTCAAGTAGCT+TGG | + | chr4.2:90651982-90652001 | MS.gene37641:intron | 35.0% | |
AATACTTGGTCATGTAACAG+TGG | + | chr4.2:90652142-90652161 | MS.gene37641:intron | 35.0% | |
ACTCTTCAAAGCAGATATCT+TGG | + | chr4.2:90651242-90651261 | MS.gene37641:CDS | 35.0% | |
AGAAACATTACCTCAGGATT+AGG | - | chr4.2:90651348-90651367 | None:intergenic | 35.0% | |
ATACTTGAAGCATAATCTGC+AGG | + | chr4.2:90651542-90651561 | MS.gene37641:intron | 35.0% | |
ATGAGATGAGAAATAGTACC+AGG | - | chr4.2:90650002-90650021 | None:intergenic | 35.0% | |
CATTGGAGAATAAGTTTCGT+TGG | + | chr4.2:90652451-90652470 | MS.gene37641:intron | 35.0% | |
CTGACAATCTTTCAACTTAC+TGG | - | chr4.2:90651445-90651464 | None:intergenic | 35.0% | |
CTTCACCGTTATATTGTTCT+GGG | + | chr4.2:90652229-90652248 | MS.gene37641:intron | 35.0% | |
GGGTGTTAATAACAAGAAGA+AGG | + | chr4.2:90649884-90649903 | MS.gene37641:CDS | 35.0% | |
GGTTGAAAACAGAACACAAA+GGG | - | chr4.2:90650823-90650842 | None:intergenic | 35.0% | |
GTATGGCCATACACTTATAA+AGG | - | chr4.2:90652200-90652219 | None:intergenic | 35.0% | |
GTTAAGCTTCTTCTTTCCAA+AGG | + | chr4.2:90649948-90649967 | MS.gene37641:CDS | 35.0% | |
TATTTGGAAAGGTCACATAC+AGG | - | chr4.2:90650856-90650875 | None:intergenic | 35.0% | |
TCAGAGAAACTGCAAAGTTT+GGG | + | chr4.2:90653147-90653166 | MS.gene37641:CDS | 35.0% | |
TGGTTGAAAACAGAACACAA+AGG | - | chr4.2:90650824-90650843 | None:intergenic | 35.0% | |
TTCGTATGGTACTTGTAGTT+GGG | - | chr4.2:90652609-90652628 | None:intergenic | 35.0% | |
TTGACTGTAAAATTGGTCGA+TGG | - | chr4.2:90651964-90651983 | None:intergenic | 35.0% | |
TTGAGTCATGAGAACAACAA+AGG | + | chr4.2:90652844-90652863 | MS.gene37641:intron | 35.0% | |
TTGCAAGTAATGTTGTTCGA+TGG | + | chr4.2:90652872-90652891 | MS.gene37641:intron | 35.0% | |
! | ATATGAACACTTGCTGAAAC+TGG | + | chr4.2:90651197-90651216 | MS.gene37641:CDS | 35.0% |
! | ATTGGCTTATGAGAATCACA+AGG | + | chr4.2:90652509-90652528 | MS.gene37641:CDS | 35.0% |
! | CGTAGTTGATGCAATACTAT+TGG | + | chr4.2:90652491-90652510 | MS.gene37641:CDS | 35.0% |
! | CTACTAGAATAACAAGTTGG+TGG | + | chr4.2:90650888-90650907 | MS.gene37641:intron | 35.0% |
! | TTTTGCAAGTTGCTACGTAT+TGG | - | chr4.2:90650518-90650537 | None:intergenic | 35.0% |
!! | AAAGTTTGGGTTGGAAATTC+AGG | + | chr4.2:90653160-90653179 | MS.gene37641:CDS | 35.0% |
!! | AGCTTCAGTTTCTAAAGTAG+TGG | + | chr4.2:90652632-90652651 | MS.gene37641:intron | 35.0% |
!! | ATTGGTGTCAGTATTGTGTT+TGG | + | chr4.2:90653004-90653023 | MS.gene37641:intron | 35.0% |
!! | TATCTGCTTTGAAGAGTGTA+AGG | - | chr4.2:90651239-90651258 | None:intergenic | 35.0% |
!!! | TTTTTTTTTGGCTTTCGCAC+CGG | + | chr4.2:90650131-90650150 | MS.gene37641:intron | 35.0% |
AACAGTTGTACCTAATCCTG+AGG | + | chr4.2:90651335-90651354 | MS.gene37641:CDS | 40.0% | |
AAGGCAAAACTAGAACCACA+CGG | - | chr4.2:90651407-90651426 | None:intergenic | 40.0% | |
AGAAACTGCAAAGTTTGGGT+TGG | + | chr4.2:90653151-90653170 | MS.gene37641:CDS | 40.0% | |
AGCTTGTCTCAAAGCTAATG+TGG | + | chr4.2:90651611-90651630 | MS.gene37641:CDS | 40.0% | |
ATTAGAAGGCTGTGACACAT+TGG | + | chr4.2:90652434-90652453 | MS.gene37641:intron | 40.0% | |
ATTAGTCATCCACCATTGGT+GGG | - | chr4.2:90650164-90650183 | None:intergenic | 40.0% | |
CCGAAAAATATCCCCATGAA+GGG | - | chr4.2:90652315-90652334 | None:intergenic | 40.0% | |
CCTATGATGGTCATAAATGG+AGG | - | chr4.2:90650565-90650584 | None:intergenic | 40.0% | |
CCTCCATTTATGACCATCAT+AGG | + | chr4.2:90650562-90650581 | MS.gene37641:intron | 40.0% | |
CGACTCCCAGAACAATATAA+CGG | - | chr4.2:90652237-90652256 | None:intergenic | 40.0% | |
CTCAGAGAAACTGCAAAGTT+TGG | + | chr4.2:90653146-90653165 | MS.gene37641:CDS | 40.0% | |
CTGTAAGAGAGATCAAGAGA+AGG | + | chr4.2:90650405-90650424 | MS.gene37641:intron | 40.0% | |
CTTCACATATGATCCAGAAC+TGG | + | chr4.2:90651865-90651884 | MS.gene37641:intron | 40.0% | |
CTTCGTATGGTACTTGTAGT+TGG | - | chr4.2:90652610-90652629 | None:intergenic | 40.0% | |
CTTTGTAGCTTCAAAACCTC+AGG | + | chr4.2:90652899-90652918 | MS.gene37641:intron | 40.0% | |
GAAAAGAACTGGACTTAACG+TGG | + | chr4.2:90651935-90651954 | MS.gene37641:CDS | 40.0% | |
GAACAATATAACGGTGAAGC+AGG | - | chr4.2:90652228-90652247 | None:intergenic | 40.0% | |
GAGGCTTGAACTATTTGGAA+AGG | - | chr4.2:90650867-90650886 | None:intergenic | 40.0% | |
GCTTCACCGTTATATTGTTC+TGG | + | chr4.2:90652228-90652247 | MS.gene37641:intron | 40.0% | |
GGATTAGGTACAACTGTTGA+AGG | - | chr4.2:90651333-90651352 | None:intergenic | 40.0% | |
GGTCCTATGATGGTCATAAA+TGG | - | chr4.2:90650568-90650587 | None:intergenic | 40.0% | |
GTAGAGAGGCTTGAACTATT+TGG | - | chr4.2:90650872-90650891 | None:intergenic | 40.0% | |
TAATTTGATACGTCACCGTG+TGG | + | chr4.2:90651389-90651408 | MS.gene37641:intron | 40.0% | |
TCAATGAGTGTTTCCTCCAA+TGG | - | chr4.2:90653186-90653205 | None:intergenic | 40.0% | |
TCCAACAATTGCGGAGTAAA+CGG | - | chr4.2:90651277-90651296 | None:intergenic | 40.0% | |
TCCATGGACAAAGTAACCTT+TGG | - | chr4.2:90649967-90649986 | None:intergenic | 40.0% | |
TGACTCTGTTGAGAGCTATA+AGG | + | chr4.2:90653203-90653222 | MS.gene37641:CDS | 40.0% | |
TGGCATAACAATACCAGTTC+TGG | - | chr4.2:90651881-90651900 | None:intergenic | 40.0% | |
! | AAGAAGAAGGTGTGTGTAAC+TGG | + | chr4.2:90649897-90649916 | MS.gene37641:CDS | 40.0% |
! | AAGCGATTGATGAGTCTTGT+TGG | + | chr4.2:90651697-90651716 | MS.gene37641:CDS | 40.0% |
! | AGTTCTTTTCGCGAAATCCA+GGG | - | chr4.2:90651925-90651944 | None:intergenic | 40.0% |
! | CCCTTCATGGGGATATTTTT+CGG | + | chr4.2:90652312-90652331 | MS.gene37641:intron | 40.0% |
! | GTACAACTGTTGAAGGTACA+GGG | - | chr4.2:90651326-90651345 | None:intergenic | 40.0% |
! | TCCAAAGGTTACTTTGTCCA+TGG | + | chr4.2:90649963-90649982 | MS.gene37641:CDS | 40.0% |
!! | CGTTATATTGTTCTGGGAGT+CGG | + | chr4.2:90652235-90652254 | MS.gene37641:intron | 40.0% |
!!! | TGGTTCTAGTTTTGCCTTCA+TGG | + | chr4.2:90651409-90651428 | MS.gene37641:intron | 40.0% |
AATACCGGGTTCGATTCCTA+GGG | - | chr4.2:90650231-90650250 | None:intergenic | 45.0% | |
AGTGAGGCGATCATCTGTTA+AGG | + | chr4.2:90652784-90652803 | MS.gene37641:intron | 45.0% | |
CAAGACAGAAGCAGAAGAAC+AGG | + | chr4.2:90651899-90651918 | MS.gene37641:CDS | 45.0% | |
CACTATCGTCACACGAGATT+TGG | + | chr4.2:90652560-90652579 | MS.gene37641:CDS | 45.0% | |
CTCTGTTGAGAGCTATAAGG+AGG | + | chr4.2:90653206-90653225 | MS.gene37641:CDS | 45.0% | |
CTGGATTTCGCGAAAAGAAC+TGG | + | chr4.2:90651924-90651943 | MS.gene37641:CDS | 45.0% | |
CTGTTCTTCTGCTTCTGTCT+TGG | - | chr4.2:90651901-90651920 | None:intergenic | 45.0% | |
CTTGAAGCATAATCTGCAGG+TGG | + | chr4.2:90651545-90651564 | MS.gene37641:intron | 45.0% | |
GAAAGGTCACATACAGGTCA+TGG | - | chr4.2:90650850-90650869 | None:intergenic | 45.0% | |
GACACACGTTAGACACTTCT+TGG | - | chr4.2:90650696-90650715 | None:intergenic | 45.0% | |
GCCGAAAAATATCCCCATGA+AGG | - | chr4.2:90652316-90652335 | None:intergenic | 45.0% | |
GCTTATGAGAATCACAAGGC+AGG | + | chr4.2:90652513-90652532 | MS.gene37641:CDS | 45.0% | |
GGAGGCTGGATTACTTCAAT+CGG | + | chr4.2:90653224-90653243 | MS.gene37641:CDS | 45.0% | |
TATAACGGTGAAGCAGGTAG+TGG | - | chr4.2:90652222-90652241 | None:intergenic | 45.0% | |
TATCGTCACACGAGATTTGG+TGG | + | chr4.2:90652563-90652582 | MS.gene37641:CDS | 45.0% | |
TATGAGAATCACAAGGCAGG+CGG | + | chr4.2:90652516-90652535 | MS.gene37641:CDS | 45.0% | |
TCACATACAGGTCATGGAGT+TGG | - | chr4.2:90650844-90650863 | None:intergenic | 45.0% | |
TCCGTTTACTCCGCAATTGT+TGG | + | chr4.2:90651273-90651292 | MS.gene37641:CDS | 45.0% | |
TGCACTGCATCCAACAATTG+CGG | - | chr4.2:90651286-90651305 | None:intergenic | 45.0% | |
TGCTGGCAGCTATATTGAGA+TGG | + | chr4.2:90653104-90653123 | MS.gene37641:intron | 45.0% | |
TTGGAAATTCAGGCCATTGG+AGG | + | chr4.2:90653170-90653189 | MS.gene37641:CDS | 45.0% | |
! | CAGTTCTTTTCGCGAAATCC+AGG | - | chr4.2:90651926-90651945 | None:intergenic | 45.0% |
! | CTGGTGTCTTTTCACCATGA+AGG | - | chr4.2:90651426-90651445 | None:intergenic | 45.0% |
! | GATTAGTCATCCACCATTGG+TGG | - | chr4.2:90650165-90650184 | None:intergenic | 45.0% |
! | GGTACAACTGTTGAAGGTAC+AGG | - | chr4.2:90651327-90651346 | None:intergenic | 45.0% |
!! | CCAATGGTGGATGACTAATC+CGG | + | chr4.2:90650165-90650184 | MS.gene37641:intron | 45.0% |
!! | GCTTCAAAACCTCAGGTTGA+AGG | + | chr4.2:90652906-90652925 | MS.gene37641:intron | 45.0% |
!! | AAAAAAAATTGAAAATTAAT+AGG | - | chr4.2:90650029-90650048 | None:intergenic | 5.0% |
AAGGTGTGTGTAACTGGAGC+AGG | + | chr4.2:90649903-90649922 | MS.gene37641:CDS | 50.0% | |
ACCATCATAGGACCCTGACA+CGG | + | chr4.2:90650574-90650593 | MS.gene37641:intron | 50.0% | |
AGTGATTGAGCCTGCAGTGA+CGG | + | chr4.2:90651569-90651588 | MS.gene37641:CDS | 50.0% | |
ATACCGGGTTCGATTCCTAG+GGG | - | chr4.2:90650230-90650249 | None:intergenic | 50.0% | |
ATGAGAATCACAAGGCAGGC+GGG | + | chr4.2:90652517-90652536 | MS.gene37641:CDS | 50.0% | |
CAGGAGGGTTTGTAGCATCA+TGG | + | chr4.2:90649922-90649941 | MS.gene37641:CDS | 50.0% | |
CAGGCTCTCTAACAGTTCCA+TGG | - | chr4.2:90649983-90650002 | None:intergenic | 50.0% | |
CATGGAACTGTTAGAGAGCC+TGG | + | chr4.2:90649981-90650000 | MS.gene37641:CDS | 50.0% | |
CTAATCCGGCTCATGCGTAA+AGG | + | chr4.2:90650179-90650198 | MS.gene37641:intron | 50.0% | |
GAATACCGGGTTCGATTCCT+AGG | - | chr4.2:90650232-90650251 | None:intergenic | 50.0% | |
GACTCGTGTCGAATACAGAG+AGG | + | chr4.2:90650757-90650776 | MS.gene37641:intron | 50.0% | |
GGGTTGGAAATTCAGGCCAT+TGG | + | chr4.2:90653167-90653186 | MS.gene37641:CDS | 50.0% | |
GTTGAGAGCTATAAGGAGGC+TGG | + | chr4.2:90653210-90653229 | MS.gene37641:CDS | 50.0% | |
TGTGTATGTCGGACAACTGC+AGG | + | chr4.2:90651165-90651184 | MS.gene37641:intron | 50.0% | |
TGTGTGTAACTGGAGCAGGA+GGG | + | chr4.2:90649907-90649926 | MS.gene37641:CDS | 50.0% | |
! | AAGGTACAGGGCTAGCAACA+TGG | - | chr4.2:90651314-90651333 | None:intergenic | 50.0% |
! | ATCGTGTTGATGCCTGACAC+CGG | - | chr4.2:90652937-90652956 | None:intergenic | 50.0% |
! | CTCCTTCTAAGGATGTACCC+GGG | - | chr4.2:90650255-90650274 | None:intergenic | 50.0% |
! | GCTCCTTCTAAGGATGTACC+CGG | - | chr4.2:90650256-90650275 | None:intergenic | 50.0% |
! | TCCTTCTAAGGATGTACCCG+GGG | - | chr4.2:90650254-90650273 | None:intergenic | 50.0% |
!! | AGTGTTGACTTGTCCGTGTC+AGG | - | chr4.2:90650590-90650609 | None:intergenic | 50.0% |
!! | CCGGATTAGTCATCCACCAT+TGG | - | chr4.2:90650168-90650187 | None:intergenic | 50.0% |
!! | GTGTTGACTTGTCCGTGTCA+GGG | - | chr4.2:90650589-90650608 | None:intergenic | 50.0% |
AATCGAACCCGGTATTCCCC+GGG | + | chr4.2:90650235-90650254 | MS.gene37641:intron | 55.0% | |
AGAAGCAGAAGAACAGGCCC+TGG | + | chr4.2:90651905-90651924 | MS.gene37641:CDS | 55.0% | |
AGGATGTACCCGGGGAATAC+CGG | - | chr4.2:90650246-90650265 | None:intergenic | 55.0% | |
CCAAGTTGCTTGCGCTCTAG+TGG | - | chr4.2:90650285-90650304 | None:intergenic | 55.0% | |
CCACTAGAGCGCAAGCAACT+TGG | + | chr4.2:90650282-90650301 | MS.gene37641:intron | 55.0% | |
GAATCGAACCCGGTATTCCC+CGG | + | chr4.2:90650234-90650253 | MS.gene37641:intron | 55.0% | |
GCATGCCTTTACGCATGAGC+CGG | - | chr4.2:90650187-90650206 | None:intergenic | 55.0% | |
GTGATTGAGCCTGCAGTGAC+GGG | + | chr4.2:90651570-90651589 | MS.gene37641:CDS | 55.0% | |
GTGGCAAGGAGCTCCTTCTA+AGG | - | chr4.2:90650266-90650285 | None:intergenic | 55.0% | |
GTGTGTGTAACTGGAGCAGG+AGG | + | chr4.2:90649906-90649925 | MS.gene37641:CDS | 55.0% | |
TACCGGGTTCGATTCCTAGG+GGG | - | chr4.2:90650229-90650248 | None:intergenic | 55.0% | |
TCCCCGGGTACATCCTTAGA+AGG | + | chr4.2:90650250-90650269 | MS.gene37641:intron | 55.0% | |
TCCGTGTCAGGGTCCTATGA+TGG | - | chr4.2:90650578-90650597 | None:intergenic | 55.0% | |
TTAGCAGTTCCCGTCACTGC+AGG | - | chr4.2:90651582-90651601 | None:intergenic | 55.0% | |
TTCCCCCTAGGAATCGAACC+CGG | + | chr4.2:90650224-90650243 | MS.gene37641:intron | 55.0% | |
TTCCTAGGGGGAACAACGCT+TGG | - | chr4.2:90650217-90650236 | None:intergenic | 55.0% | |
TTGCTTGCGCTCTAGTGGCA+AGG | - | chr4.2:90650280-90650299 | None:intergenic | 55.0% | |
! | ACCATTGGTGGGTCGGAAAC+CGG | - | chr4.2:90650153-90650172 | None:intergenic | 55.0% |
! | ATGCGTAAAGGCATGCGCAC+TGG | + | chr4.2:90650191-90650210 | MS.gene37641:intron | 55.0% |
! | CGGTGAAGCAGGTAGTGGTA+TGG | - | chr4.2:90652217-90652236 | None:intergenic | 55.0% |
! | GTCATCCACCATTGGTGGGT+CGG | - | chr4.2:90650160-90650179 | None:intergenic | 55.0% |
! | TTGAAGGTGTGTCCGGTGTC+AGG | + | chr4.2:90652922-90652941 | MS.gene37641:intron | 55.0% |
!! | CCTCAGGTTGAAGGTGTGTC+CGG | + | chr4.2:90652915-90652934 | MS.gene37641:intron | 55.0% |
CCGGACACACCTTCAACCTG+AGG | - | chr4.2:90652918-90652937 | None:intergenic | 60.0% | |
GGATGTACCCGGGGAATACC+GGG | - | chr4.2:90650245-90650264 | None:intergenic | 60.0% | |
GGTTTCCGACCCACCAATGG+TGG | + | chr4.2:90650152-90650171 | MS.gene37641:intron | 60.0% | |
! | ACCGGTTTCCGACCCACCAA+TGG | + | chr4.2:90650149-90650168 | MS.gene37641:intron | 60.0% |
! | GGCCAAGCGTTGTTCCCCCT+AGG | + | chr4.2:90650212-90650231 | MS.gene37641:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 90649870 | 90653251 | 90649870 | ID=MS.gene37641 |
chr4.2 | mRNA | 90649870 | 90653251 | 90649870 | ID=MS.gene37641.t1;Parent=MS.gene37641 |
chr4.2 | exon | 90649870 | 90650002 | 90649870 | ID=MS.gene37641.t1.exon1;Parent=MS.gene37641.t1 |
chr4.2 | CDS | 90649870 | 90650002 | 90649870 | ID=cds.MS.gene37641.t1;Parent=MS.gene37641.t1 |
chr4.2 | exon | 90651187 | 90651356 | 90651187 | ID=MS.gene37641.t1.exon2;Parent=MS.gene37641.t1 |
chr4.2 | CDS | 90651187 | 90651356 | 90651187 | ID=cds.MS.gene37641.t1;Parent=MS.gene37641.t1 |
chr4.2 | exon | 90651564 | 90651749 | 90651564 | ID=MS.gene37641.t1.exon3;Parent=MS.gene37641.t1 |
chr4.2 | CDS | 90651564 | 90651749 | 90651564 | ID=cds.MS.gene37641.t1;Parent=MS.gene37641.t1 |
chr4.2 | exon | 90651882 | 90651956 | 90651882 | ID=MS.gene37641.t1.exon4;Parent=MS.gene37641.t1 |
chr4.2 | CDS | 90651882 | 90651956 | 90651882 | ID=cds.MS.gene37641.t1;Parent=MS.gene37641.t1 |
chr4.2 | exon | 90652459 | 90652628 | 90652459 | ID=MS.gene37641.t1.exon5;Parent=MS.gene37641.t1 |
chr4.2 | CDS | 90652459 | 90652628 | 90652459 | ID=cds.MS.gene37641.t1;Parent=MS.gene37641.t1 |
chr4.2 | exon | 90653113 | 90653251 | 90653113 | ID=MS.gene37641.t1.exon6;Parent=MS.gene37641.t1 |
chr4.2 | CDS | 90653113 | 90653251 | 90653113 | ID=cds.MS.gene37641.t1;Parent=MS.gene37641.t1 |
Gene Sequence |
Protein sequence |