AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37657

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37657.t1 MTR_4g009690 96.319 326 12 0 1 326 1 326 0.0 646
MS.gene37657.t1 MTR_4g009040 94.769 325 17 0 1 325 1 325 0.0 635
MS.gene37657.t1 MTR_4g009040 93.617 329 17 1 1 325 1 329 0.0 629
MS.gene37657.t1 MTR_4g009690 96.012 326 12 1 1 326 1 325 0.0 617
MS.gene37657.t1 MTR_4g006940 46.914 324 160 4 4 323 11 326 6.69e-91 275
MS.gene37657.t1 MTR_2g104960 47.619 315 156 3 13 323 20 329 6.77e-89 270
MS.gene37657.t1 MTR_4g006940 49.819 277 131 3 4 280 11 279 1.15e-83 254
MS.gene37657.t1 MTR_4g006940 49.819 277 131 3 4 280 11 279 1.15e-83 254
MS.gene37657.t1 MTR_5g072620 41.875 320 178 3 10 323 2 319 4.20e-82 251
MS.gene37657.t1 MTR_3g005170 42.357 314 171 7 13 319 10 320 3.05e-76 237
MS.gene37657.t1 MTR_2g101330 40.881 318 184 4 12 325 4 321 1.00e-75 236
MS.gene37657.t1 MTR_4g077100 42.271 317 171 8 11 319 9 321 2.95e-74 232
MS.gene37657.t1 MTR_3g005210 42.138 318 174 7 9 319 2 316 3.19e-74 231
MS.gene37657.t1 MTR_8g062440 42.547 322 172 9 11 324 6 322 6.57e-73 228
MS.gene37657.t1 MTR_4g077130 41.956 317 172 8 11 319 7 319 1.29e-72 228
MS.gene37657.t1 MTR_8g062440 42.724 323 171 10 11 324 6 323 3.77e-72 226
MS.gene37657.t1 MTR_2g028620 41.231 325 181 5 8 324 5 327 7.83e-72 226
MS.gene37657.t1 MTR_3g031650 38.365 318 192 2 10 323 2 319 8.77e-71 223
MS.gene37657.t1 MTR_8g062110 42.271 317 170 8 11 319 7 318 3.68e-70 221
MS.gene37657.t1 MTR_8g062110 42.138 318 171 8 10 319 15 327 4.11e-70 221
MS.gene37657.t1 MTR_3g005170 43.542 271 146 6 13 279 10 277 1.67e-69 218
MS.gene37657.t1 MTR_4g077100 43.590 273 147 6 11 279 9 278 2.46e-68 215
MS.gene37657.t1 MTR_2g028620 46.667 255 129 4 8 257 5 257 9.94e-66 209
MS.gene37657.t1 MTR_8g062440 44.776 268 140 7 11 274 6 269 3.90e-65 208
MS.gene37657.t1 MTR_5g056600 35.625 320 195 5 12 323 3 319 1.07e-64 207
MS.gene37657.t1 MTR_3g031650 38.806 268 163 1 10 276 2 269 6.09e-64 204
MS.gene37657.t1 MTR_3g005170 38.535 314 152 7 13 319 10 289 1.36e-63 203
MS.gene37657.t1 MTR_1g022440 37.267 322 187 11 13 323 8 325 1.86e-63 204
MS.gene37657.t1 MTR_8g062110 41.463 287 153 7 11 293 7 282 2.12e-63 202
MS.gene37657.t1 MTR_8g062110 42.804 271 147 6 11 277 7 273 3.08e-63 202
MS.gene37657.t1 MTR_1g022445 36.335 322 190 10 13 323 8 325 3.25e-60 196
MS.gene37657.t1 MTR_4g092080 37.651 332 181 11 11 322 12 337 1.70e-55 184
MS.gene37657.t1 MTR_4g081440 33.811 349 202 11 1 325 8 351 4.94e-50 170
MS.gene37657.t1 MTR_7g074880 33.746 323 200 7 12 323 7 326 2.83e-49 167
MS.gene37657.t1 MTR_7g074820 35.168 327 193 10 12 323 7 329 4.67e-49 167
MS.gene37657.t1 MTR_4g081440 33.429 347 207 10 1 325 12 356 5.40e-49 167
MS.gene37657.t1 MTR_7g074730 33.538 325 200 9 12 323 7 328 3.70e-48 164
MS.gene37657.t1 MTR_7g074850 32.822 326 202 9 12 323 7 329 2.38e-45 157
MS.gene37657.t1 MTR_4g023730 36.119 335 187 12 8 323 3 329 6.32e-44 153
MS.gene37657.t1 MTR_7g074710 33.739 329 192 12 12 323 7 326 3.90e-43 151
MS.gene37657.t1 MTR_8g062710 75.532 94 13 1 12 105 19 102 6.75e-41 139
MS.gene37657.t1 MTR_0164s0070 53.543 127 57 2 12 136 4 130 4.21e-36 129
MS.gene37657.t1 MTR_8g062110 35.652 230 137 6 101 323 11 236 1.98e-35 129
MS.gene37657.t1 MTR_5g029990 31.169 308 172 10 13 303 12 296 8.00e-34 126
MS.gene37657.t1 MTR_7g074870 32.028 281 179 7 52 323 11 288 7.77e-33 123
MS.gene37657.t1 MTR_2g013230 29.738 343 201 13 12 323 7 340 1.61e-29 115
MS.gene37657.t1 MTR_8g062708 81.250 64 12 0 218 281 5 68 2.12e-29 109
MS.gene37657.t1 MTR_8g062110 35.556 180 110 4 101 277 11 187 8.75e-29 110
MS.gene37657.t1 MTR_6g406250 30.418 263 174 4 13 269 55 314 2.16e-28 113
MS.gene37657.t1 MTR_7g117190 29.358 327 201 12 12 312 6 328 9.51e-28 110
MS.gene37657.t1 MTR_2g013250 29.290 338 205 13 12 321 6 337 1.73e-27 110
MS.gene37657.t1 MTR_7g117190 30.690 290 172 11 12 276 6 291 2.30e-27 109
MS.gene37657.t1 MTR_6g406250 31.937 191 126 2 13 199 55 245 4.14e-24 99.4
MS.gene37657.t1 MTR_2g013260 28.613 346 197 14 12 321 7 338 2.05e-22 96.3
MS.gene37657.t1 MTR_2g013260 29.667 300 163 12 12 277 7 292 1.69e-20 90.1
MS.gene37657.t1 MTR_0685s0030 33.750 160 98 3 165 319 2 158 1.78e-20 87.0
MS.gene37657.t1 MTR_3g011130 35.897 117 70 4 104 216 30 145 2.79e-15 72.4
MS.gene37657.t1 MTR_0685s0030 33.043 115 76 1 165 279 2 115 6.90e-15 70.5
MS.gene37657.t1 MTR_3g101500 26.496 351 201 13 11 324 2 332 1.16e-13 71.2
MS.gene37657.t1 MTR_3g101500 30.435 253 150 11 11 257 2 234 2.29e-13 70.1
MS.gene37657.t1 MTR_3g101500 32.812 192 106 10 11 199 2 173 1.75e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37657.t1 AT2G33590 66.134 313 105 1 12 323 8 320 4.35e-145 412
MS.gene37657.t1 AT2G33600 63.898 313 112 1 12 323 8 320 3.17e-132 379
MS.gene37657.t1 AT1G76470 55.975 318 135 2 11 323 5 322 6.04e-115 335
MS.gene37657.t1 AT1G80820 45.455 319 165 3 9 323 4 317 5.27e-86 262
MS.gene37657.t1 AT1G51410 45.031 322 165 8 11 324 7 324 3.77e-83 254
MS.gene37657.t1 AT1G09510 47.059 323 161 7 8 323 3 322 9.72e-83 253
MS.gene37657.t1 AT1G15950 44.654 318 167 3 10 323 10 322 2.77e-81 250
MS.gene37657.t1 AT1G15950 44.654 318 167 3 10 323 10 322 2.77e-81 250
MS.gene37657.t1 AT5G19440 43.505 331 174 8 1 324 1 325 4.81e-80 246
MS.gene37657.t1 AT1G80820 48.897 272 134 2 9 280 4 270 6.96e-79 242
MS.gene37657.t1 AT1G15950 44.481 308 162 3 10 313 10 312 6.55e-78 241
MS.gene37657.t1 AT1G15950 47.826 276 139 2 10 285 10 280 2.64e-77 238
MS.gene37657.t1 AT1G15950 48.352 273 136 2 10 282 10 277 3.56e-77 238
MS.gene37657.t1 AT1G15950 48.339 271 135 2 10 280 10 275 4.66e-76 235
MS.gene37657.t1 AT5G58490 41.587 315 180 2 13 323 9 323 1.34e-75 235
MS.gene37657.t1 AT2G02400 39.117 317 183 5 13 323 6 318 1.84e-75 234
MS.gene37657.t1 AT1G09490 41.693 319 178 6 11 323 6 322 1.16e-73 230
MS.gene37657.t1 AT4G35420 40.432 324 176 7 12 325 7 323 1.09e-72 228
MS.gene37657.t1 AT1G66800 44.688 320 163 8 11 323 6 318 2.01e-72 227
MS.gene37657.t1 AT1G09480 42.320 319 176 6 11 323 6 322 6.67e-72 226
MS.gene37657.t1 AT1G09480 42.320 319 176 6 11 323 53 369 1.62e-71 226
MS.gene37657.t1 AT1G09500 41.667 324 180 6 8 323 3 325 3.10e-71 224
MS.gene37657.t1 AT1G09500 44.649 271 146 4 8 275 3 272 1.77e-68 215
MS.gene37657.t1 AT5G42800 38.720 328 186 10 7 323 2 325 4.19e-64 207
MS.gene37657.t1 AT1G09490 39.146 281 164 5 48 323 13 291 7.13e-57 186
MS.gene37657.t1 AT1G09500 39.929 283 162 5 48 323 10 291 2.67e-54 179
MS.gene37657.t1 AT1G68540 33.228 316 204 4 15 323 6 321 1.23e-52 176
MS.gene37657.t1 AT1G25460 33.333 315 203 4 15 323 6 319 1.22e-51 173
MS.gene37657.t1 AT2G45400 34.731 334 186 11 13 323 40 364 3.02e-47 163
MS.gene37657.t1 AT4G27250 33.735 332 192 10 1 312 1 324 4.15e-46 159
MS.gene37657.t1 AT1G61720 34.627 335 197 12 10 326 10 340 4.30e-45 157
MS.gene37657.t1 AT4G27250 33.728 338 194 10 1 312 1 334 4.83e-45 157
MS.gene37657.t1 AT1G15950 40.179 224 130 1 104 323 1 224 5.56e-44 151
MS.gene37657.t1 AT2G23910 32.609 276 168 6 14 282 11 275 1.51e-41 146
MS.gene37657.t1 AT2G45400 35.088 285 161 8 13 280 40 317 2.77e-41 146
MS.gene37657.t1 AT2G23910 32.830 265 161 5 14 272 11 264 2.88e-41 145
MS.gene37657.t1 AT2G23910 32.830 265 161 5 14 272 11 264 4.81e-41 145
MS.gene37657.t1 AT4G30470 34.074 270 158 6 14 274 11 269 2.78e-39 140
MS.gene37657.t1 AT2G45400 32.075 318 184 12 27 323 1 307 1.10e-35 131
MS.gene37657.t1 AT2G45400 38.249 217 117 6 13 216 40 252 4.29e-33 123
MS.gene37657.t1 AT2G23910 32.018 228 139 4 50 272 14 230 6.00e-31 118
MS.gene37657.t1 AT1G68540 31.401 207 138 2 121 323 8 214 4.55e-30 114
MS.gene37657.t1 AT5G14700 32.482 274 166 8 9 269 51 318 1.81e-28 113
MS.gene37657.t1 AT5G14700 32.093 215 134 5 10 214 52 264 6.92e-23 96.7

Find 65 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGTCCTACTCTTGTTT+TGG 0.178833 4.2:-91111841 MS.gene37657:CDS
TCATCAATCGCTTTATCTTT+TGG 0.246957 4.2:+91112171 None:intergenic
CTCAGAGAAACTGCAAAGTT+TGG 0.267800 4.2:-91110581 MS.gene37657:CDS
TTCAGCAAGTGTTCATATTT+CGG 0.273006 4.2:+91112665 None:intergenic
AATAAGAAGGTGTGTGTAAC+TGG 0.296410 4.2:-91113654 MS.gene37657:CDS
CGCTATCGTCACACGAGATT+TGG 0.313010 4.2:-91111198 MS.gene37657:CDS
ATATGAACACTTGCTGAAAC+TGG 0.323661 4.2:-91112660 MS.gene37657:CDS
CTGAATTTCGCGAAAAGAAC+TGG 0.329580 4.2:-91111879 MS.gene37657:CDS
TTCGTTGGGTACTTGTAGTT+TGG 0.331532 4.2:+91111152 None:intergenic
ACTCTTTAAAGCAGATATCT+TGG 0.332879 4.2:-91112615 MS.gene37657:CDS
CTGTTCTTCTGCTTCTGTCT+TGG 0.343397 4.2:+91111905 None:intergenic
AAAGTTTGGGTTGGAAATTC+AGG 0.345192 4.2:-91110567 MS.gene37657:CDS
TATAAAGTTACCTCAGGATT+AGG 0.352578 4.2:+91112512 None:intergenic
CAAGACAGAAGCAGAAGAAC+AGG 0.371007 4.2:-91111904 MS.gene37657:CDS
AACCAAGCTACTTGCGTTTG+TGG 0.374252 4.2:+91111800 None:intergenic
TTTGTGGTTGACTGTAAAAT+TGG 0.377992 4.2:+91111816 None:intergenic
GAAAATGAAGCTTACTTCGT+TGG 0.382161 4.2:+91111137 None:intergenic
CTTAGAAGGCTGTGACTCAT+TGG 0.384842 4.2:-91111324 MS.gene37657:intron
TCCGTTTACTCCGCAATTGT+TGG 0.399978 4.2:-91112584 MS.gene37657:CDS
TCAGAGAAACTGCAAAGTTT+GGG 0.410030 4.2:-91110580 MS.gene37657:CDS
TCCATGGACAAAGTAACCTT+TGG 0.412376 4.2:+91113587 None:intergenic
TCCAACAATTGCGGAGTAAA+CGG 0.413187 4.2:+91112583 None:intergenic
CATTGGAGAATAAGCTTCGT+TGG 0.422203 4.2:-91111307 MS.gene37657:CDS
TGACTCTGTTGAGAGCTATA+AGG 0.425631 4.2:-91110524 MS.gene37657:CDS
TATCTGCTTTAAAGAGTGTA+AGG 0.426168 4.2:+91112621 None:intergenic
AAAATGAAGCTTACTTCGTT+GGG 0.445192 4.2:+91111138 None:intergenic
AAGCGATTGATGAATCTTGT+TGG 0.449691 4.2:-91112161 MS.gene37657:CDS
CATGGAACTGTTAGAGAGCC+TGG 0.466759 4.2:-91113570 MS.gene37657:intron
TCCAAAGGTTACTTTGTCCA+TGG 0.474794 4.2:-91113588 MS.gene37657:CDS
GGTACAACTGTTGAAGGTAC+AGG 0.487565 4.2:+91112533 None:intergenic
ATGAGAATCACGAGGCAAAC+GGG 0.492326 4.2:-91111241 MS.gene37657:CDS
TTAGCAGTTCCCTTCACTGC+AGG 0.496393 4.2:+91112279 None:intergenic
AAGGTGTGTGTAACTGGAGC+AGG 0.505575 4.2:-91113648 MS.gene37657:CDS
CAGGAGGGTTTGTAGCATCA+TGG 0.506329 4.2:-91113629 MS.gene37657:CDS
GGATTAGGTACAACTGTTGA+AGG 0.511645 4.2:+91112527 None:intergenic
AGAAACTGCAAAGTTTGGGT+TGG 0.515747 4.2:-91110576 MS.gene37657:CDS
TATGAGAATCACGAGGCAAA+CGG 0.517667 4.2:-91111242 MS.gene37657:CDS
GGGTTGGAAATTCAGGCCAT+TGG 0.519755 4.2:-91110560 MS.gene37657:CDS
GTTGAGAGCTATAAGGAAGC+TGG 0.520202 4.2:-91110517 MS.gene37657:CDS
GTTAAGCTTCTTCTTTCCAA+AGG 0.521805 4.2:-91113603 MS.gene37657:CDS
TTGGAAATTCAGGCCATTGG+AGG 0.526899 4.2:-91110557 MS.gene37657:CDS
AGGAGATAATGGAAACAAGT+GGG 0.540632 4.2:-91113689 None:intergenic
TGCTATTAGCTATATTGAGA+TGG 0.540718 4.2:-91110623 MS.gene37657:intron
TCAATGAGTGTTTCCTCCAA+TGG 0.543548 4.2:+91110544 None:intergenic
AACCACAAACGCAAGTAGCT+TGG 0.545980 4.2:-91111802 MS.gene37657:CDS
CAGGCTCTCTAACAGTTCCA+TGG 0.553939 4.2:+91113571 None:intergenic
GTGATTGAGCCTGCAGTGAA+GGG 0.570026 4.2:-91112288 MS.gene37657:CDS
GGAGATAATGGAAACAAGTG+GGG 0.572345 4.2:-91113688 None:intergenic
ATTGGTCCCAAAACAAGAGT+AGG 0.572490 4.2:+91111834 None:intergenic
GTGTGTGTAACTGGAGCAGG+AGG 0.579894 4.2:-91113645 MS.gene37657:CDS
TATCGTCACACGAGATTTGG+TGG 0.581985 4.2:-91111195 MS.gene37657:CDS
AGTGATTGAGCCTGCAGTGA+AGG 0.582476 4.2:-91112289 MS.gene37657:CDS
GAGGAGATAATGGAAACAAG+TGG 0.583352 4.2:-91113690 None:intergenic
AAGGTACAGGGCTAGCAACA+TGG 0.584108 4.2:+91112546 None:intergenic
GGGTGTTAATAACAATAAGA+AGG 0.597736 4.2:-91113667 MS.gene37657:CDS
AGACTACTGCAAAAGTACTC+AGG 0.607907 4.2:-91112130 MS.gene37657:intron
TGTAGTTGATGCAATACTGT+TGG 0.608013 4.2:-91111267 MS.gene37657:CDS
TGCACTGCATCCAACAATTG+CGG 0.621267 4.2:+91112574 None:intergenic
GTACAACTGTTGAAGGTACA+GGG 0.621515 4.2:+91112534 None:intergenic
AGCTTGTCTCAAAGCTAATG+TGG 0.639403 4.2:-91112247 MS.gene37657:CDS
GAGATAATGGAAACAAGTGG+GGG 0.650626 4.2:-91113687 None:intergenic
GAAAAGAACTGGACTTAACG+TGG 0.670351 4.2:-91111868 MS.gene37657:CDS
AACAGTTGTACCTAATCCTG+AGG 0.672409 4.2:-91112522 MS.gene37657:intron
TGTGTGTAACTGGAGCAGGA+GGG 0.744318 4.2:-91113644 MS.gene37657:CDS
GTTGGCTTATGAGAATCACG+AGG 0.795304 4.2:-91111249 MS.gene37657:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATTGAAAATTAAC+AGG + chr4.2:91110657-91110676 None:intergenic 10.0%
!!! TTTTTAATAAGAATTTGATA+AGG + chr4.2:91112439-91112458 None:intergenic 10.0%
!! AAGAATTTCATTACTATATA+TGG - chr4.2:91110773-91110792 MS.gene37657:intron 15.0%
!! AGGATTAAATATATATCTAT+CGG + chr4.2:91111114-91111133 None:intergenic 15.0%
!! ATACAAAGGAAAAAAAAATA+GGG - chr4.2:91111180-91111199 MS.gene37657:CDS 15.0%
!! ACATCTCAAATATATATACA+AGG + chr4.2:91111134-91111153 None:intergenic 20.0%
!! CCAATGATAATTTGATAAAA+CGG + chr4.2:91113437-91113456 None:intergenic 20.0%
!! CTGATAATATTTAAATTTCG+AGG + chr4.2:91113088-91113107 None:intergenic 20.0%
!! GATACAAAGGAAAAAAAAAT+AGG - chr4.2:91111179-91111198 MS.gene37657:CDS 20.0%
!! TCAAAAGAATAAGAAAATAG+AGG + chr4.2:91111439-91111458 None:intergenic 20.0%
!!! CTTTATCTTTTGGTAAATTA+GGG + chr4.2:91112001-91112020 None:intergenic 20.0%
!!! TATGTATCCATAAATTTGTT+TGG + chr4.2:91110858-91110877 None:intergenic 20.0%
!!! TCATTTAAACAATTAGCTTT+TGG + chr4.2:91110935-91110954 None:intergenic 20.0%
!!! TCTATTTTCTTATTCTTTTG+AGG - chr4.2:91111438-91111457 MS.gene37657:intron 20.0%
!!! TCTTATGTTTTTGACATTAA+CGG + chr4.2:91111083-91111102 None:intergenic 20.0%
!!! TTTGGGCTTTAATATTTATT+TGG - chr4.2:91112549-91112568 MS.gene37657:CDS 20.0%
! AAGAGTCATTTACTACAATT+TGG + chr4.2:91111260-91111279 None:intergenic 25.0%
! ACTATATATGGAAAGAAACA+AGG - chr4.2:91110785-91110804 MS.gene37657:intron 25.0%
! AGAATGTCCAAACAAATTTA+TGG - chr4.2:91110848-91110867 MS.gene37657:intron 25.0%
! AGAGTCATTTACTACAATTT+GGG + chr4.2:91111259-91111278 None:intergenic 25.0%
! ATTTGATAAGGCATATTAGT+AGG + chr4.2:91112427-91112446 None:intergenic 25.0%
! GAGATATCAATAATTGTATC+AGG - chr4.2:91113237-91113256 MS.gene37657:intron 25.0%
! TATAACATGTTGTCTGTTTA+AGG + chr4.2:91111319-91111338 None:intergenic 25.0%
! TGCAATCATCAAATCTATAT+AGG + chr4.2:91113515-91113534 None:intergenic 25.0%
!! ATTTACTACAATTTGGGATT+TGG + chr4.2:91111253-91111272 None:intergenic 25.0%
!! CCGTTTTATCAAATTATCAT+TGG - chr4.2:91113434-91113453 MS.gene37657:intron 25.0%
!! CTTCACCATTATATTGTTTT+GGG - chr4.2:91112687-91112706 MS.gene37657:intron 25.0%
!! GCTTTATCTTTTGGTAAATT+AGG + chr4.2:91112002-91112021 None:intergenic 25.0%
!! TTGATTTTAAACACATGTGT+CGG + chr4.2:91113409-91113428 None:intergenic 25.0%
!!! ATTTTAGTCCCTAAAATTGA+AGG + chr4.2:91110901-91110920 None:intergenic 25.0%
!!! TTCAATTTTAGGGACTAAAA+TGG - chr4.2:91110900-91110919 MS.gene37657:intron 25.0%
AAAATGAAGCTTACTTCGTT+GGG + chr4.2:91113044-91113063 None:intergenic 30.0%
AAACAATATAATGGTGAAGC+AGG + chr4.2:91112686-91112705 None:intergenic 30.0%
AATTGAGCTTTACATGACAA+TGG + chr4.2:91111284-91111303 None:intergenic 30.0%
ACATAACAGATTCAGAGTTT+GGG - chr4.2:91112532-91112551 MS.gene37657:CDS 30.0%
AGTCCTATGATGGTAATAAA+TGG + chr4.2:91111015-91111034 None:intergenic 30.0%
CATACAAGATTGAAACATGA+AGG + chr4.2:91112777-91112796 None:intergenic 30.0%
CATCCATTTATTACCATCAT+AGG - chr4.2:91111009-91111028 MS.gene37657:intron 30.0%
CTGAAAATCTTTCAACTTAC+TGG + chr4.2:91111766-91111785 None:intergenic 30.0%
GAAAAACTGCAAGTAATGTT+GGG - chr4.2:91113289-91113308 MS.gene37657:intron 30.0%
GACACTACTATCATATCATA+AGG + chr4.2:91112122-91112141 None:intergenic 30.0%
GGGTGTTAATAACAATAAGA+AGG - chr4.2:91110512-91110531 MS.gene37657:CDS 30.0%
GTATTGCCATACACTTATAA+CGG + chr4.2:91112659-91112678 None:intergenic 30.0%
TACATAACAGATTCAGAGTT+TGG - chr4.2:91112531-91112550 MS.gene37657:CDS 30.0%
TATAAAGTTACCTCAGGATT+AGG + chr4.2:91111670-91111689 None:intergenic 30.0%
TGCTATTAGCTATATTGAGA+TGG - chr4.2:91113556-91113575 MS.gene37657:intron 30.0%
TTCAGCAAGTGTTCATATTT+CGG + chr4.2:91111517-91111536 None:intergenic 30.0%
TTCATCTTGTCTTTCTTAGA+AGG - chr4.2:91112841-91112860 MS.gene37657:intron 30.0%
TTTGTGGTTGACTGTAAAAT+TGG + chr4.2:91112366-91112385 None:intergenic 30.0%
! GCTTCACCATTATATTGTTT+TGG - chr4.2:91112686-91112705 MS.gene37657:intron 30.0%
! GTTCTCGTCAAACTTTTAAA+AGG - chr4.2:91112399-91112418 MS.gene37657:intron 30.0%
! TCATCAATCGCTTTATCTTT+TGG + chr4.2:91112011-91112030 None:intergenic 30.0%
! TGTGATAGCCTTCAATTTTA+GGG - chr4.2:91110890-91110909 MS.gene37657:intron 30.0%
! TTGTGATAGCCTTCAATTTT+AGG - chr4.2:91110889-91110908 MS.gene37657:intron 30.0%
! TTTTAGCCGTTATAAGTGTA+TGG - chr4.2:91112650-91112669 MS.gene37657:CDS 30.0%
!! ACTCTTTAAAGCAGATATCT+TGG - chr4.2:91111564-91111583 MS.gene37657:intron 30.0%
!! TATCTGCTTTAAAGAGTGTA+AGG + chr4.2:91111561-91111580 None:intergenic 30.0%
!! TTTGTATACAAGTGTTGAAG+AGG - chr4.2:91111402-91111421 MS.gene37657:intron 30.0%
!!! ATTTGTCCTACTCTTGTTTT+GGG - chr4.2:91112339-91112358 MS.gene37657:intron 30.0%
!!! CATTATATTGTTTTGGGAGT+CGG - chr4.2:91112693-91112712 MS.gene37657:intron 30.0%
AACATGTTGTCTGTTTAAGG+TGG + chr4.2:91111316-91111335 None:intergenic 35.0%
AACGAAGTCAATCATTGATG+AGG - chr4.2:91113188-91113207 MS.gene37657:intron 35.0%
AAGCGATTGATGAATCTTGT+TGG - chr4.2:91112018-91112037 MS.gene37657:intron 35.0%
ACAATGCGAGTTAAAATCCT+TGG - chr4.2:91112478-91112497 MS.gene37657:intron 35.0%
ATATAATGGTGAAGCAGGTA+TGG + chr4.2:91112681-91112700 None:intergenic 35.0%
ATGAGATGAGAAATAGTACC+AGG + chr4.2:91110630-91110649 None:intergenic 35.0%
ATGGAAAGAAACAAGGCTTA+AGG - chr4.2:91110792-91110811 MS.gene37657:intron 35.0%
CGACTCCCAAAACAATATAA+TGG + chr4.2:91112695-91112714 None:intergenic 35.0%
GAAAATGAAGCTTACTTCGT+TGG + chr4.2:91113045-91113064 None:intergenic 35.0%
GAACGTTATAAAGTTACCTC+AGG + chr4.2:91111676-91111695 None:intergenic 35.0%
GGAAAAACTGCAAGTAATGT+TGG - chr4.2:91113288-91113307 MS.gene37657:intron 35.0%
GTTAAGCTTCTTCTTTCCAA+AGG - chr4.2:91110576-91110595 MS.gene37657:CDS 35.0%
TCAGAGAAACTGCAAAGTTT+GGG - chr4.2:91113599-91113618 MS.gene37657:CDS 35.0%
! AATAAGAAGGTGTGTGTAAC+TGG - chr4.2:91110525-91110544 MS.gene37657:CDS 35.0%
! AGTTCTTTTCGCGAAATTCA+GGG + chr4.2:91112301-91112320 None:intergenic 35.0%
! ATATGAACACTTGCTGAAAC+TGG - chr4.2:91111519-91111538 MS.gene37657:intron 35.0%
! TCTAACATGTGTCGATACAA+AGG - chr4.2:91111166-91111185 MS.gene37657:CDS 35.0%
! TGTAGTTGATGCAATACTGT+TGG - chr4.2:91112912-91112931 MS.gene37657:intron 35.0%
!! AAAGTTTGGGTTGGAAATTC+AGG - chr4.2:91113612-91113631 MS.gene37657:CDS 35.0%
!! CATTTGTCCTACTCTTGTTT+TGG - chr4.2:91112338-91112357 MS.gene37657:intron 35.0%
!!! GGATTTTAACTCGCATTGTA+CGG + chr4.2:91112477-91112496 None:intergenic 35.0%
!!! TGGTTCTAGTTTTGCTTTTG+TGG - chr4.2:91111730-91111749 MS.gene37657:intron 35.0%
!!! TGTCACTTCAGACTTTTTCA+TGG + chr4.2:91111837-91111856 None:intergenic 35.0%
AAAGCAAAACTAGAACCACG+CGG + chr4.2:91111728-91111747 None:intergenic 40.0%
AACAGTTGTACCTAATCCTG+AGG - chr4.2:91111657-91111676 MS.gene37657:intron 40.0%
AGAAACTGCAAAGTTTGGGT+TGG - chr4.2:91113603-91113622 MS.gene37657:CDS 40.0%
AGCTTGTCTCAAAGCTAATG+TGG - chr4.2:91111932-91111951 MS.gene37657:intron 40.0%
AGTGTCGTCGAAATTGTTCA+TGG - chr4.2:91111796-91111815 MS.gene37657:CDS 40.0%
ATTGGTCCCAAAACAAGAGT+AGG + chr4.2:91112348-91112367 None:intergenic 40.0%
CATTGGAGAATAAGCTTCGT+TGG - chr4.2:91112872-91112891 MS.gene37657:intron 40.0%
CTCAGAGAAACTGCAAAGTT+TGG - chr4.2:91113598-91113617 MS.gene37657:CDS 40.0%
CTGAATTTCGCGAAAAGAAC+TGG - chr4.2:91112300-91112319 MS.gene37657:intron 40.0%
GAAAAGAACTGGACTTAACG+TGG - chr4.2:91112311-91112330 MS.gene37657:intron 40.0%
GACACATGTTAGACACTTCT+TGG + chr4.2:91111159-91111178 None:intergenic 40.0%
GGATTAGGTACAACTGTTGA+AGG + chr4.2:91111655-91111674 None:intergenic 40.0%
GTAGCAACTTGCAAAACTAG+AGG - chr4.2:91110969-91110988 MS.gene37657:intron 40.0%
GTATTCAAAGCTTAATCCGC+AGG - chr4.2:91111863-91111882 MS.gene37657:CDS 40.0%
GTCTCTATGTTGACACGAAT+CGG + chr4.2:91111229-91111248 None:intergenic 40.0%
TAATTTGATATGTCACCGCG+TGG - chr4.2:91111710-91111729 MS.gene37657:intron 40.0%
TATGAGAATCACGAGGCAAA+CGG - chr4.2:91112937-91112956 MS.gene37657:intron 40.0%
TCAATGAGTGTTTCCTCCAA+TGG + chr4.2:91113638-91113657 None:intergenic 40.0%
TCCAACAATTGCGGAGTAAA+CGG + chr4.2:91111599-91111618 None:intergenic 40.0%
TCCATGGACAAAGTAACCTT+TGG + chr4.2:91110595-91110614 None:intergenic 40.0%
TGACTCTGTTGAGAGCTATA+AGG - chr4.2:91113655-91113674 MS.gene37657:CDS 40.0%
TGGCATAACAATACCAGTTC+TGG + chr4.2:91112257-91112276 None:intergenic 40.0%
TTCGTTGGGTACTTGTAGTT+TGG + chr4.2:91113030-91113049 None:intergenic 40.0%
! CAGTTCTTTTCGCGAAATTC+AGG + chr4.2:91112302-91112321 None:intergenic 40.0%
! CATTGTAGCATCGAAACTTC+AGG - chr4.2:91113347-91113366 MS.gene37657:intron 40.0%
! GACACTTTTCGTGTGAGTAT+CGG - chr4.2:91111202-91111221 MS.gene37657:CDS 40.0%
! GTACAACTGTTGAAGGTACA+GGG + chr4.2:91111648-91111667 None:intergenic 40.0%
! GTTGTCTGTTTAAGGTGGTT+TGG + chr4.2:91111311-91111330 None:intergenic 40.0%
! TCCAAAGGTTACTTTGTCCA+TGG - chr4.2:91110591-91110610 MS.gene37657:CDS 40.0%
! TTGAAGGTGTATCTTGTGTC+CGG - chr4.2:91113370-91113389 MS.gene37657:intron 40.0%
!! AGACTACTGCAAAAGTACTC+AGG - chr4.2:91112049-91112068 MS.gene37657:intron 40.0%
AACCAAGCTACTTGCGTTTG+TGG + chr4.2:91112382-91112401 None:intergenic 45.0%
AACCACAAACGCAAGTAGCT+TGG - chr4.2:91112377-91112396 MS.gene37657:intron 45.0%
AATCCTTGGTCATGTGACAG+TGG - chr4.2:91112492-91112511 MS.gene37657:intron 45.0%
ACTGTCGAGTCATGAGAATG+AGG - chr4.2:91113263-91113282 MS.gene37657:intron 45.0%
ATGAGAATCACGAGGCAAAC+GGG - chr4.2:91112938-91112957 MS.gene37657:intron 45.0%
CAAGACAGAAGCAGAAGAAC+AGG - chr4.2:91112275-91112294 MS.gene37657:CDS 45.0%
CTGTTCTTCTGCTTCTGTCT+TGG + chr4.2:91112277-91112296 None:intergenic 45.0%
CTTAGAAGGCTGTGACTCAT+TGG - chr4.2:91112855-91112874 MS.gene37657:intron 45.0%
GTTGAGAGCTATAAGGAAGC+TGG - chr4.2:91113662-91113681 MS.gene37657:CDS 45.0%
TATCGTCACACGAGATTTGG+TGG - chr4.2:91112984-91113003 MS.gene37657:intron 45.0%
TCCGTTTACTCCGCAATTGT+TGG - chr4.2:91111595-91111614 MS.gene37657:intron 45.0%
TCGAGTCATGAGAATGAGGA+AGG - chr4.2:91113267-91113286 MS.gene37657:intron 45.0%
TGCACTGCATCCAACAATTG+CGG + chr4.2:91111608-91111627 None:intergenic 45.0%
TGTCGCATATGATCCAGAAC+TGG - chr4.2:91112241-91112260 MS.gene37657:CDS 45.0%
TTCAAAGCTTAATCCGCAGG+TGG - chr4.2:91111866-91111885 MS.gene37657:CDS 45.0%
TTGGAAATTCAGGCCATTGG+AGG - chr4.2:91113622-91113641 MS.gene37657:CDS 45.0%
! GGTACAACTGTTGAAGGTAC+AGG + chr4.2:91111649-91111668 None:intergenic 45.0%
! GTTGGCTTATGAGAATCACG+AGG - chr4.2:91112930-91112949 MS.gene37657:intron 45.0%
!! CAGTGTTGACTTGTACGTGT+CGG + chr4.2:91111038-91111057 None:intergenic 45.0%
!! GCATCGAAACTTCAGGTTGA+AGG - chr4.2:91113354-91113373 MS.gene37657:intron 45.0%
AAGGTGTGTGTAACTGGAGC+AGG - chr4.2:91110531-91110550 MS.gene37657:CDS 50.0%
ACACCACTGTCACATGACCA+AGG + chr4.2:91112498-91112517 None:intergenic 50.0%
AGCGTATGTCTGACAACTGC+AGG - chr4.2:91111487-91111506 MS.gene37657:intron 50.0%
AGTGATTGAGCCTGCAGTGA+AGG - chr4.2:91111890-91111909 MS.gene37657:CDS 50.0%
CAGCGTGTCAATGTCGTGTT+CGG - chr4.2:91113460-91113479 MS.gene37657:intron 50.0%
CAGGAGGGTTTGTAGCATCA+TGG - chr4.2:91110550-91110569 MS.gene37657:CDS 50.0%
CAGGCTCTCTAACAGTTCCA+TGG + chr4.2:91110611-91110630 None:intergenic 50.0%
CATGGAACTGTTAGAGAGCC+TGG - chr4.2:91110609-91110628 MS.gene37657:CDS 50.0%
CGCTATCGTCACACGAGATT+TGG - chr4.2:91112981-91113000 MS.gene37657:intron 50.0%
CTGCAAGTAATGTTGGGCGA+TGG - chr4.2:91113295-91113314 MS.gene37657:intron 50.0%
GGGTTGGAAATTCAGGCCAT+TGG - chr4.2:91113619-91113638 MS.gene37657:CDS 50.0%
GTGATTGAGCCTGCAGTGAA+GGG - chr4.2:91111891-91111910 MS.gene37657:CDS 50.0%
TACGTGTCGGAGTCCTATGA+TGG + chr4.2:91111025-91111044 None:intergenic 50.0%
TGTGTGTAACTGGAGCAGGA+GGG - chr4.2:91110535-91110554 MS.gene37657:CDS 50.0%
TTAGCAGTTCCCTTCACTGC+AGG + chr4.2:91111903-91111922 None:intergenic 50.0%
! AAGGTACAGGGCTAGCAACA+TGG + chr4.2:91111636-91111655 None:intergenic 50.0%
GGCTCAATCACTTCCACCTG+CGG + chr4.2:91111882-91111901 None:intergenic 55.0%
GTGTGTGTAACTGGAGCAGG+AGG - chr4.2:91110534-91110553 MS.gene37657:CDS 55.0%
TGTCGGTATCGTCTCGATGC+CGG + chr4.2:91113392-91113411 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 91110498 91113703 91110498 ID=MS.gene37657
chr4.2 mRNA 91110498 91113703 91110498 ID=MS.gene37657.t1;Parent=MS.gene37657
chr4.2 exon 91113571 91113703 91113571 ID=MS.gene37657.t1.exon1;Parent=MS.gene37657.t1
chr4.2 CDS 91113571 91113703 91113571 ID=cds.MS.gene37657.t1;Parent=MS.gene37657.t1
chr4.2 exon 91112523 91112692 91112523 ID=MS.gene37657.t1.exon2;Parent=MS.gene37657.t1
chr4.2 CDS 91112523 91112692 91112523 ID=cds.MS.gene37657.t1;Parent=MS.gene37657.t1
chr4.2 exon 91112131 91112316 91112131 ID=MS.gene37657.t1.exon3;Parent=MS.gene37657.t1
chr4.2 CDS 91112131 91112316 91112131 ID=cds.MS.gene37657.t1;Parent=MS.gene37657.t1
chr4.2 exon 91111781 91111943 91111781 ID=MS.gene37657.t1.exon4;Parent=MS.gene37657.t1
chr4.2 CDS 91111781 91111943 91111781 ID=cds.MS.gene37657.t1;Parent=MS.gene37657.t1
chr4.2 exon 91111152 91111341 91111152 ID=MS.gene37657.t1.exon5;Parent=MS.gene37657.t1
chr4.2 CDS 91111152 91111341 91111152 ID=cds.MS.gene37657.t1;Parent=MS.gene37657.t1
chr4.2 exon 91110498 91110636 91110498 ID=MS.gene37657.t1.exon6;Parent=MS.gene37657.t1
chr4.2 CDS 91110498 91110636 91110498 ID=cds.MS.gene37657.t1;Parent=MS.gene37657.t1
Gene Sequence

>MS.gene37657

ATGGAAACAAGTGGGGGTGTTAATAACAATAAGAAGGTGTGTGTAACTGGAGCAGGAGGGTTTGTAGCATCATGGCTTGTTAAGCTTCTTCTTTCCAAAGGTTACTTTGTCCATGGAACTGTTAGAGAGCCTGGTACTATTTCTCATCTCATTATTCCTGTTAATTTTCAATTTTTTTAGAATTAATTATAAATATCTTAATTGTTATTGAGAAATATTCTAATACATTGTTGTTAATGTTATATATGTATAGTATACGTTTATTTTAGTAAGCAAAGAATTTCATTACTATATATGGAAAGAAACAAGGCTTAAGGACATGTAATTTTGATGCTGTAAGAGAGATTAAGAGAATGTCCAAACAAATTTATGGATACATACTCTATACAACTTGTGATAGCCTTCAATTTTAGGGACTAAAATGGTGATTCAATCCAAAAGCTAATTGTTTAAATGAAAGTCAACTAATACGTAGCAACTTGCAAAACTAGAGGAAATTAACAATATATCTCATCCATTTATTACCATCATAGGACTCCGACACGTACAAGTCAACACTGTTAATGTCAAAAACATAGAACACCGTTAATGTCAAAAACATAAGACACTGACTCCGATAGATATATATTTAATCCTTGTATATATATTTGAGATGTGTCCAAGAAGTGTCTAACATGTGTCGATACAAAGGAAAAAAAAATAGGGACACTTTTCGTGTGAGTATCGGACCGATTCGTGTCAACATAGAGACGCCAAATCCCAAATTGTAGTAAATGACTCTTGCCATTGTCATGTAAAGCTCAATTCAGACCAAACCACCTTAAACAGACAACATGTTATACTTGTATATGTAATATAAATTGTTGATTTTTCATTATTAGCTAATACTTTGTTAGTATACTATTTTGTATACAAGTGTTGAAGAGGATGTTGTTATGCCTCTATTTTCTTATTCTTTTGAGGTACGAGTGTTGTTGCGATTCATTTGAAGCGTATGTCTGACAACTGCAGGTAGTCCGAAATATGAACACTTGCTGAAACTGGAGAAAGCTTCTGAGAACCTTACACTCTTTAAAGCAGATATCTTGGATTACGAATCCGTTTACTCCGCAATTGTTGGATGCAGTGCAGTTTTCCATGTTGCTAGCCCTGTACCTTCAACAGTTGTACCTAATCCTGAGGTAACTTTATAACGTTCTCTTATATGCAGACTAATTTGATATGTCACCGCGTGGTTCTAGTTTTGCTTTTGTGGTGAAAAGACACCAGTAAGTTGAAAGATTTTCAGCTTATCAATCAGTGTCGTCGAAATTGTTCATGGTAGTAAACACGACATCCATGAAAAAGTCTGAAGTGACAAATAATGTATTCAAAGCTTAATCCGCAGGTGGAAGTGATTGAGCCTGCAGTGAAGGGAACTGCTAATGTACTTGAAGCTTGTCTCAAAGCTAATGTGGAACGTGTCGTCTTTGTATCATCTGTAGCTGCTGTTGCTATCAACCCTAATTTACCAAAAGATAAAGCGATTGATGAATCTTGTTGGTCTGACAAAGACTACTGCAAAAGTACTCAGGTCACTAAGATTTTATTATATCTGTGCATGACATAAATGTATCATTAGCCTTATGATATGATAGTAGTGTCTGTTATACAATTTTTTATTCAGATGTTTAAGTTGCAAAATATGCTATATTGCTATGTTTCAATCGTCATAGAATTTTGTGTTATGTAAATGAACTTATGTGTCGCATATGATCCAGAACTGGTATTGTTATGCCAAGACAGAAGCAGAAGAACAGGCCCTGAATTTCGCGAAAAGAACTGGACTTAACGTGGTAAGCATTTGTCCTACTCTTGTTTTGGGACCAATTTTACAGTCAACCACAAACGCAAGTAGCTTGGTTCTCGTCAAACTTTTAAAAGGTACCTACTAATATGCCTTATCAAATTCTTATTAAAAAATGCATGTTTATGAACCGTACAATGCGAGTTAAAATCCTTGGTCATGTGACAGTGGTGTTTGATTTTTAGTTTACATAACAGATTCAGAGTTTGGGCTTTAATATTTATTTGGATATTATGTTTGAATATTAGTAGCAAATTTGATGATTAATTATAAATATGTGTGTTTAGTTTTGTGCATTCTTCTATTTTTTAGCCGTTATAAGTGTATGGCAATACCATACCTGCTTCACCATTATATTGTTTTGGGAGTCGGCTGCTACGCTACGCTATCTTCTACTAACTAGATAGATCATGAATTATGTATGAATATGCCTTCATGTTTCAATCTTGTATGAATATTAAAAATTACTTTAAATATTAAAATTACTTTTCATGTTATTCATCTTGTCTTTCTTAGAAGGCTGTGACTCATTGGAGAATAAGCTTCGTTGGATTGTTGACGTACGAGATGTAGTTGATGCAATACTGTTGGCTTATGAGAATCACGAGGCAAACGGGAGATACATTTGCACTTCACACGCTATCGTCACACGAGATTTGGTGGAGAGATTGAAGAGTACATATCCAAACTACAAGTACCCAACGAAGTAAGCTTCATTTTCTAAAGTAGTAGTCATAAACTCCTCGAAATTTAAATATTATCAGTAATTTTAATAATATCAAGATATATATGAAATATGTAAGAAATGTAAAAAAATAAGAGAATTTGTTTTTAACATAAAACTAACGAAGTCAATCATTGATGAGGAGATTATATGTTAAGCAAGTTCTTGTGAGATATCAATAATTGTATCAGGAAAACTGTCGAGTCATGAGAATGAGGAAGGAAAAACTGCAAGTAATGTTGGGCGATGGAGTACTAGCAGTGTCAATATTAATAGTTGCATTGTAGCATCGAAACTTCAGGTTGAAGGTGTATCTTGTGTCCGGCATCGAGACGATACCGACACATGTGTTTAAAATCAATACTTCCGTTTTATCAAATTATCATTGGTGTCAGCGTGTCAATGTCGTGTTCGGTGAATGTGTCAGTGTTTCGTAGCTACTTGCCTATATAGATTTGATGATTGCAATCTTATGTTAATGTTTTCATTGCTATTAGCTATATTGAGATGGATGATTACAAAATGCTGAGCTCAGAGAAACTGCAAAGTTTGGGTTGGAAATTCAGGCCATTGGAGGAAACACTCATTGACTCTGTTGAGAGCTATAAGGAAGCTGGACTACTTCAATCAGAATAA
Protein sequence

>MS.gene37657.t1

METSGGVNNNKKVCVTGAGGFVASWLVKLLLSKGYFVHGTVREPGSPKYEHLLKLEKASENLTLFKADILDYESVYSAIVGCSAVFHVASPVPSTVVPNPEVEVIEPAVKGTANVLEACLKANVERVVFVSSVAAVAINPNLPKDKAIDESCWSDKDYCKSTQNWYCYAKTEAEEQALNFAKRTGLNVVSICPTLVLGPILQSTTNASSLVLVKLLKEGCDSLENKLRWIVDVRDVVDAILLAYENHEANGRYICTSHAIVTRDLVERLKSTYPNYKYPTNYIEMDDYKMLSSEKLQSLGWKFRPLEETLIDSVESYKEAGLLQSE