AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37690.t1 MTR_1g102720 98.585 212 3 0 1 212 2 213 1.39e-159 439
MS.gene37690.t1 MTR_7g095690 71.292 209 55 2 9 212 3 211 2.76e-109 312
MS.gene37690.t1 MTR_5g098250 36.150 213 128 1 8 212 2 214 1.01e-39 135
MS.gene37690.t1 MTR_5g098250 36.150 213 128 1 8 212 1 213 1.02e-39 135
MS.gene37690.t1 MTR_3g060210 32.178 202 132 2 8 208 12 209 2.41e-32 116
MS.gene37690.t1 MTR_3g072600 27.778 144 101 2 65 205 70 213 1.96e-14 69.7
MS.gene37690.t1 MTR_8g088940 28.082 146 100 2 65 205 62 207 9.74e-13 65.1
MS.gene37690.t1 MTR_8g088980 28.571 140 95 2 71 205 19 158 2.27e-12 63.2
MS.gene37690.t1 MTR_2g007210 23.913 184 132 4 26 205 23 202 1.36e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37690.t1 AT3G22845 79.907 214 41 2 1 212 1 214 1.39e-128 361
MS.gene37690.t1 AT3G22845 76.119 134 30 2 1 132 1 134 4.83e-71 214
MS.gene37690.t1 AT3G07680 32.512 203 136 1 10 212 7 208 6.01e-33 118
MS.gene37690.t1 AT1G57620 26.168 214 143 6 1 205 1 208 1.80e-16 75.1
MS.gene37690.t1 AT1G09580 29.586 169 111 3 45 205 45 213 1.55e-15 72.8
MS.gene37690.t1 AT1G21900 22.886 201 144 4 13 205 15 212 5.11e-12 63.2

Find 48 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGACAAATTTCAATTTA+AGG 0.133646 1.1:-73728678 MS.gene37690:CDS
TACGAAGGGGATACCGTTTC+GGG 0.172344 1.1:-73729940 MS.gene37690:CDS
CAGATGTTCCTTTGATATCT+TGG 0.236681 1.1:+73728699 None:intergenic
CATGTAGAACATACCATCTT+TGG 0.243131 1.1:+73728547 None:intergenic
AATTTATACATTCCGTGTAC+TGG 0.328863 1.1:+73728653 None:intergenic
TTGATGGTTTGCAGAGCATT+TGG 0.346873 1.1:-73728362 MS.gene37690:intron
ACGGTCTCAGGTGTTGAGTA+TGG 0.356849 1.1:+73728617 None:intergenic
TTACGAAGGGGATACCGTTT+CGG 0.363134 1.1:-73729941 MS.gene37690:CDS
CAAGATATCAAAGGAACATC+TGG 0.393409 1.1:-73728698 MS.gene37690:CDS
CACTGCAAGTCATGTACATC+AGG 0.429992 1.1:-73727991 MS.gene37690:CDS
GTGGATGGTGTTGATGTGTT+TGG 0.436991 1.1:-73730040 MS.gene37690:CDS
CGTGTTATCTTCTACACTGT+TGG 0.459757 1.1:-73728043 MS.gene37690:CDS
ATTTATACATTCCGTGTACT+GGG 0.462322 1.1:+73728654 None:intergenic
TATCTGCAGGTAACATCTCC+TGG 0.475966 1.1:-73728734 MS.gene37690:intron
TGCCGAGCTCAGAGAGGCAT+TGG 0.476042 1.1:-73728320 MS.gene37690:CDS
TCACCCTGGCATTGATTTCA+CGG 0.481893 1.1:-73729875 MS.gene37690:intron
GAAATCAATGCCAGGGTGAT+CGG 0.508098 1.1:+73729879 None:intergenic
CAATTTAAGGCCCCAGTACA+CGG 0.513678 1.1:-73728665 MS.gene37690:CDS
TTCCAATGCCTCTCTGAGCT+CGG 0.524751 1.1:+73728318 None:intergenic
GAGCATGACCTTGCCAAAGA+TGG 0.530671 1.1:-73728560 MS.gene37690:intron
GTTTCTTTCTATATCCATGT+TGG 0.530932 1.1:-73728596 MS.gene37690:CDS
CGGTCTCAGGTGTTGAGTAT+GGG 0.533708 1.1:+73728618 None:intergenic
ATATAGAAAGAAACGGTCTC+AGG 0.535926 1.1:+73728605 None:intergenic
CGGAACTCCAGAAAATATCA+TGG 0.549085 1.1:+73729899 None:intergenic
ATGAGTATGTGCTTTACGAA+GGG 0.567800 1.1:-73729954 MS.gene37690:CDS
TTGGCAAGGTCATGCTCAGA+GGG 0.569730 1.1:+73728566 None:intergenic
ATGCCACTGACTTGCTGAAG+AGG 0.577922 1.1:+73727966 None:intergenic
GACAACAAAATTCCCCGAAA+CGG 0.580687 1.1:+73729927 None:intergenic
CTTACCGTGAAATCAATGCC+AGG 0.583610 1.1:+73729871 None:intergenic
CACTAACAGCAGCCAACAGA+AGG 0.587296 1.1:+73728014 None:intergenic
TGTTGGAGAGTACCTTCTGT+TGG 0.587408 1.1:-73728026 MS.gene37690:CDS
TCTTGGACAACATTACCTCC+AGG 0.591309 1.1:+73728716 None:intergenic
AATGTTGTCCAAGATATCAA+AGG 0.595153 1.1:-73728707 MS.gene37690:CDS
TATGAGTATGTGCTTTACGA+AGG 0.595805 1.1:-73729955 MS.gene37690:CDS
CAGAGGGAATATGACCAACA+TGG 0.605526 1.1:+73728582 None:intergenic
AACATGGATATAGAAAGAAA+CGG 0.606163 1.1:+73728598 None:intergenic
ACTTGAGAGCTCGAGATGCA+AGG 0.627861 1.1:-73728273 MS.gene37690:CDS
GCGCCTCTTCAGCAAGTCAG+TGG 0.632298 1.1:-73727969 MS.gene37690:CDS
TTCTGGAGTTCCGATCACCC+TGG 0.637663 1.1:-73729889 MS.gene37690:CDS
TGAGTATGTGCTTTACGAAG+GGG 0.643837 1.1:-73729953 MS.gene37690:CDS
AGAACATACCATCTTTGGCA+AGG 0.653070 1.1:+73728552 None:intergenic
TTTATACATTCCGTGTACTG+GGG 0.658699 1.1:+73728655 None:intergenic
TTACCGTGAAATCAATGCCA+GGG 0.659563 1.1:+73729872 None:intergenic
TTTGGCAAGGTCATGCTCAG+AGG 0.659698 1.1:+73728565 None:intergenic
TGATGGAGGGGACTCAAACA+CGG 0.671358 1.1:+73727939 None:intergenic
ACGAAGGGGATACCGTTTCG+GGG 0.686401 1.1:-73729939 MS.gene37690:CDS
TAAAATTGCCGAGCTCAGAG+AGG 0.738112 1.1:-73728326 MS.gene37690:CDS
CTGCAGGTAACATCTCCTGG+AGG 0.743481 1.1:-73728731 MS.gene37690:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTTAATGAATGATTAT+TGG - chr1.1:73728599-73728618 MS.gene37690:CDS 15.0%
!! TACAAAACAATATGAAAATT+CGG + chr1.1:73729227-73729246 None:intergenic 15.0%
!! TTCATTATAATAACAAATGA+TGG + chr1.1:73729161-73729180 None:intergenic 15.0%
!!! TATTTTATTTTCCTATGTTT+TGG - chr1.1:73729607-73729626 MS.gene37690:intron 15.0%
!! AAAACTTAATCACATTTAAG+TGG + chr1.1:73728558-73728577 None:intergenic 20.0%
!! AATTCAACAAATTATGAACT+GGG + chr1.1:73728255-73728274 None:intergenic 20.0%
!! ACAAAACAATATGAAAATTC+GGG + chr1.1:73729226-73729245 None:intergenic 20.0%
!! AGTAAGTAAGAATAAAAGAA+GGG + chr1.1:73729912-73729931 None:intergenic 20.0%
!! ATTCATTAAATCATACAAAG+TGG + chr1.1:73728593-73728612 None:intergenic 20.0%
!! TAATTCAACAAATTATGAAC+TGG + chr1.1:73728256-73728275 None:intergenic 20.0%
!! TTGTGAACATATATGATATA+TGG - chr1.1:73729850-73729869 MS.gene37690:intron 20.0%
!!! CTACTTTGAAAATTCAATTT+TGG - chr1.1:73729810-73729829 MS.gene37690:intron 20.0%
!!! TTTAGTATTTTATTCCCATT+TGG - chr1.1:73728900-73728919 MS.gene37690:intron 20.0%
! AACATGGATATAGAAAGAAA+CGG + chr1.1:73729420-73729439 None:intergenic 25.0%
! AATTGATATAATGCAGCTTA+AGG + chr1.1:73728535-73728554 None:intergenic 25.0%
! ATCAAAATTGCACAGAAAAA+CGG + chr1.1:73728191-73728210 None:intergenic 25.0%
! ATTACGATTTATGAAGTCAT+TGG - chr1.1:73728272-73728291 MS.gene37690:CDS 25.0%
! ATTCAACAAATTATGAACTG+GGG + chr1.1:73728254-73728273 None:intergenic 25.0%
! GAGTAAGTAAGAATAAAAGA+AGG + chr1.1:73729913-73729932 None:intergenic 25.0%
! GCTAGCTAGTATTATATTAT+AGG - chr1.1:73729121-73729140 MS.gene37690:intron 25.0%
! GGTAAAAGATAAACACTTAA+AGG - chr1.1:73728865-73728884 MS.gene37690:intron 25.0%
! GTTTACAATAATGTTACAGA+AGG + chr1.1:73728641-73728660 None:intergenic 25.0%
! TGAATATAGAATTGAGGTTT+AGG - chr1.1:73728432-73728451 MS.gene37690:intron 25.0%
! TGGAGACAAATTTCAATTTA+AGG - chr1.1:73729337-73729356 MS.gene37690:intron 25.0%
! TGTAACTGAATATAGAATTG+AGG - chr1.1:73728426-73728445 MS.gene37690:intron 25.0%
! TTACGATTTATGAAGTCATT+GGG - chr1.1:73728273-73728292 MS.gene37690:CDS 25.0%
!!! CGGCAATTTTAACATTAATT+GGG + chr1.1:73729680-73729699 None:intergenic 25.0%
!!! CTTTATTTTGTGCACTTAAA+TGG - chr1.1:73728949-73728968 MS.gene37690:intron 25.0%
!!! GAAGTTTTTTTTATGCCTAT+AGG - chr1.1:73728463-73728482 MS.gene37690:intron 25.0%
!!! TATTTTTAGGGTGTTTAAGA+GGG - chr1.1:73728336-73728355 MS.gene37690:CDS 25.0%
!!! TCGGCAATTTTAACATTAAT+TGG + chr1.1:73729681-73729700 None:intergenic 25.0%
!!! TTATTTTTAGGGTGTTTAAG+AGG - chr1.1:73728335-73728354 MS.gene37690:CDS 25.0%
AATGATTATTGGTGAATCCT+TGG - chr1.1:73728610-73728629 MS.gene37690:CDS 30.0%
AATGTTGTCCAAGATATCAA+AGG - chr1.1:73729308-73729327 MS.gene37690:intron 30.0%
AATTTATACATTCCGTGTAC+TGG + chr1.1:73729365-73729384 None:intergenic 30.0%
AGGCATAAAAAAAACTTCCT+TGG + chr1.1:73728461-73728480 None:intergenic 30.0%
AGGCTTGACTATATTGTTAT+TGG - chr1.1:73729036-73729055 MS.gene37690:intron 30.0%
AGTAGAACAATGAAAGTTGA+TGG + chr1.1:73729795-73729814 None:intergenic 30.0%
ATTTATACATTCCGTGTACT+GGG + chr1.1:73729364-73729383 None:intergenic 30.0%
GAAAAGAAAACTACTTACTG+TGG + chr1.1:73729773-73729792 None:intergenic 30.0%
GAAAATATAATCAAGCCAAC+AGG + chr1.1:73728513-73728532 None:intergenic 30.0%
GCAAACCATCAAAGTTTAAA+CGG + chr1.1:73729645-73729664 None:intergenic 30.0%
GTTTCTTTCTATATCCATGT+TGG - chr1.1:73729419-73729438 MS.gene37690:intron 30.0%
TACGATTTATGAAGTCATTG+GGG - chr1.1:73728274-73728293 MS.gene37690:CDS 30.0%
TCAATTTGATCAATCCATGT+TGG - chr1.1:73728752-73728771 MS.gene37690:intron 30.0%
TTCTTGACATTTCTGATGAA+TGG - chr1.1:73729575-73729594 MS.gene37690:intron 30.0%
! ACATTTCTTTTTCCCCATTT+CGG - chr1.1:73729875-73729894 MS.gene37690:intron 30.0%
! ACTATATTGTTATTGGCTGT+GGG - chr1.1:73729043-73729062 MS.gene37690:intron 30.0%
! CTTTTGTATATAGCAAACTG+CGG - chr1.1:73728993-73729012 MS.gene37690:intron 30.0%
! TAAGAATAAAAGAAGGGTAC+AGG + chr1.1:73729906-73729925 None:intergenic 30.0%
! TTGGTCTTTAGTTTACCTAT+AGG + chr1.1:73728481-73728500 None:intergenic 30.0%
! TTTGTATTTTGCTTTGGTGA+GGG - chr1.1:73728299-73728318 MS.gene37690:CDS 30.0%
AAAAGAAAAACGCGAAGATG+TGG - chr1.1:73727956-73727975 MS.gene37690:CDS 35.0%
ACCATCAAAGTTTAAACGGA+AGG + chr1.1:73729641-73729660 None:intergenic 35.0%
AGGCAAGATAACCAAAACAT+AGG + chr1.1:73729621-73729640 None:intergenic 35.0%
ATATAGAAAGAAACGGTCTC+AGG + chr1.1:73729413-73729432 None:intergenic 35.0%
ATGAGTATGTGCTTTACGAA+GGG - chr1.1:73728061-73728080 MS.gene37690:CDS 35.0%
CAAGATATCAAAGGAACATC+TGG - chr1.1:73729317-73729336 MS.gene37690:intron 35.0%
CAGATGTTCCTTTGATATCT+TGG + chr1.1:73729319-73729338 None:intergenic 35.0%
CATGTAGAACATACCATCTT+TGG + chr1.1:73729471-73729490 None:intergenic 35.0%
CTTGAGACATAGATACATTG+AGG - chr1.1:73729016-73729035 MS.gene37690:intron 35.0%
GAAATGTCAAGAAGTAAGTC+AGG + chr1.1:73729568-73729587 None:intergenic 35.0%
GATCTTTGTTAGTGCGTAAT+AGG - chr1.1:73728723-73728742 MS.gene37690:CDS 35.0%
TAGAAAGTGATGACTGAAGA+TGG - chr1.1:73728823-73728842 MS.gene37690:intron 35.0%
TATGAGTATGTGCTTTACGA+AGG - chr1.1:73728060-73728079 MS.gene37690:CDS 35.0%
TGCAGATAACTGCGAAAATT+AGG + chr1.1:73729269-73729288 None:intergenic 35.0%
TTTATACATTCCGTGTACTG+GGG + chr1.1:73729363-73729382 None:intergenic 35.0%
! AATAAAAGAAGGGTACAGGT+AGG + chr1.1:73729902-73729921 None:intergenic 35.0%
! GACTATATTGTTATTGGCTG+TGG - chr1.1:73729042-73729061 MS.gene37690:intron 35.0%
! GTATTTTATTCCCATTTGGC+TGG - chr1.1:73728904-73728923 MS.gene37690:intron 35.0%
! GTTTGTATTTTGCTTTGGTG+AGG - chr1.1:73728298-73728317 MS.gene37690:CDS 35.0%
! TAATTTTCGCAGTTATCTGC+AGG - chr1.1:73729268-73729287 MS.gene37690:intron 35.0%
! TCGTTGACCATGATATTTTC+TGG - chr1.1:73728109-73728128 MS.gene37690:intron 35.0%
AAAACCTCCTTCAAGCATAG+GGG + chr1.1:73729083-73729102 None:intergenic 40.0%
AATATCAGCACCAGCCAAAT+GGG + chr1.1:73728917-73728936 None:intergenic 40.0%
AATTGAGGTTTAGGTGTCCA+AGG - chr1.1:73728441-73728460 MS.gene37690:intron 40.0%
ACAAAACCTCCTTCAAGCAT+AGG + chr1.1:73729085-73729104 None:intergenic 40.0%
ACAAATTATGAACTGGGGCA+AGG + chr1.1:73728249-73728268 None:intergenic 40.0%
AGAACATACCATCTTTGGCA+AGG + chr1.1:73729466-73729485 None:intergenic 40.0%
AGATGGTTGAAGGTAGGAAT+AGG - chr1.1:73728840-73728859 MS.gene37690:intron 40.0%
CAAAACCTCCTTCAAGCATA+GGG + chr1.1:73729084-73729103 None:intergenic 40.0%
CATTTCTGATGAATGGTCTG+AGG - chr1.1:73729582-73729601 MS.gene37690:intron 40.0%
CGGAACTCCAGAAAATATCA+TGG + chr1.1:73728119-73728138 None:intergenic 40.0%
CGTGTTATCTTCTACACTGT+TGG - chr1.1:73729972-73729991 MS.gene37690:CDS 40.0%
GACAACAAAATTCCCCGAAA+CGG + chr1.1:73728091-73728110 None:intergenic 40.0%
GATGGTTGAAGGTAGGAATA+GGG - chr1.1:73728841-73728860 MS.gene37690:intron 40.0%
GCCTTCCGTTTAAACTTTGA+TGG - chr1.1:73729637-73729656 MS.gene37690:intron 40.0%
GGTATGTTCTACATGAAAGC+AGG - chr1.1:73729476-73729495 MS.gene37690:intron 40.0%
TGAGTATGTGCTTTACGAAG+GGG - chr1.1:73728062-73728081 MS.gene37690:CDS 40.0%
TGATGACTGAAGATGGTTGA+AGG - chr1.1:73728830-73728849 MS.gene37690:intron 40.0%
TGCACAGAAAAACGGAATTG+TGG + chr1.1:73728183-73728202 None:intergenic 40.0%
TTACCGTGAAATCAATGCCA+GGG + chr1.1:73728146-73728165 None:intergenic 40.0%
! CTCGTCTAGTACTGAAACTT+TGG - chr1.1:73728660-73728679 MS.gene37690:CDS 40.0%
! TTGATGGTTTGCAGAGCATT+TGG - chr1.1:73729653-73729672 MS.gene37690:intron 40.0%
!! GGGGTGTTTGTATTTTGCTT+TGG - chr1.1:73728293-73728312 MS.gene37690:CDS 40.0%
!! GGTGCTGATATTCAAATGGA+TGG - chr1.1:73728925-73728944 MS.gene37690:intron 40.0%
!!! ACAAGTGCTGACGTTCATTT+TGG + chr1.1:73728686-73728705 None:intergenic 40.0%
!!! ACGTCAGCACTTGTTTTGTT+CGG - chr1.1:73728692-73728711 MS.gene37690:CDS 40.0%
ACAAACACGCTGATCCAACA+TGG + chr1.1:73728769-73728788 None:intergenic 45.0%
CACTGCAAGTCATGTACATC+AGG - chr1.1:73730024-73730043 MS.gene37690:CDS 45.0%
CAGAGGGAATATGACCAACA+TGG + chr1.1:73729436-73729455 None:intergenic 45.0%
CTTACCGTGAAATCAATGCC+AGG + chr1.1:73728147-73728166 None:intergenic 45.0%
GAAAAACGCGAAGATGTGGA+TGG - chr1.1:73727960-73727979 MS.gene37690:CDS 45.0%
GAAATCAATGCCAGGGTGAT+CGG + chr1.1:73728139-73728158 None:intergenic 45.0%
GAATATCAGCACCAGCCAAA+TGG + chr1.1:73728918-73728937 None:intergenic 45.0%
GACCAAAAAGAGTTGCCTGT+TGG - chr1.1:73728495-73728514 MS.gene37690:intron 45.0%
GACTGAAGATGGTTGAAGGT+AGG - chr1.1:73728834-73728853 MS.gene37690:intron 45.0%
TAAAATTGCCGAGCTCAGAG+AGG - chr1.1:73729689-73729708 MS.gene37690:intron 45.0%
TATCTGCAGGTAACATCTCC+TGG - chr1.1:73729281-73729300 MS.gene37690:intron 45.0%
TCTTGGACAACATTACCTCC+AGG + chr1.1:73729302-73729321 None:intergenic 45.0%
TTACGAAGGGGATACCGTTT+CGG - chr1.1:73728074-73728093 MS.gene37690:intron 45.0%
TTGGTTACCCCTATGCTTGA+AGG - chr1.1:73729073-73729092 MS.gene37690:intron 45.0%
! AGCCAACAGGCAACTCTTTT+TGG + chr1.1:73728500-73728519 None:intergenic 45.0%
! CAATTTAAGGCCCCAGTACA+CGG - chr1.1:73729350-73729369 MS.gene37690:intron 45.0%
!! GGCTGGTGCTGATATTCAAA+TGG - chr1.1:73728921-73728940 MS.gene37690:intron 45.0%
!! GTGGATGGTGTTGATGTGTT+TGG - chr1.1:73727975-73727994 MS.gene37690:CDS 45.0%
!! TCACCCTGGCATTGATTTCA+CGG - chr1.1:73728140-73728159 MS.gene37690:intron 45.0%
!! TGTTACAGAAGGTACTGCCA+AGG + chr1.1:73728630-73728649 None:intergenic 45.0%
!! TGTTGGAGAGTACCTTCTGT+TGG - chr1.1:73729989-73730008 MS.gene37690:CDS 45.0%
!!! AAAAATGTTTTTTTATTTTT+AGG - chr1.1:73728323-73728342 MS.gene37690:CDS 5.0%
!!! AAAATGTTTTTTTATTTTTA+GGG - chr1.1:73728324-73728343 MS.gene37690:CDS 5.0%
ACTTGAGAGCTCGAGATGCA+AGG - chr1.1:73729742-73729761 MS.gene37690:intron 50.0%
ATTGGCTGTGGGAGTCTCAT+TGG - chr1.1:73729054-73729073 MS.gene37690:intron 50.0%
CACTAACAGCAGCCAACAGA+AGG + chr1.1:73730004-73730023 None:intergenic 50.0%
GAGCATGACCTTGCCAAAGA+TGG - chr1.1:73729455-73729474 MS.gene37690:intron 50.0%
GGTACAGGTAGGACCGAAAT+GGG + chr1.1:73729891-73729910 None:intergenic 50.0%
GGTTGAAGGTAGGAATAGGG+AGG - chr1.1:73728844-73728863 MS.gene37690:intron 50.0%
GTACAGGTAGGACCGAAATG+GGG + chr1.1:73729890-73729909 None:intergenic 50.0%
GTTACCCCTATGCTTGAAGG+AGG - chr1.1:73729076-73729095 MS.gene37690:intron 50.0%
TACGAAGGGGATACCGTTTC+GGG - chr1.1:73728075-73728094 MS.gene37690:intron 50.0%
TTCCAATGCCTCTCTGAGCT+CGG + chr1.1:73729700-73729719 None:intergenic 50.0%
TTGGCAAGGTCATGCTCAGA+GGG + chr1.1:73729452-73729471 None:intergenic 50.0%
TTTGGCAAGGTCATGCTCAG+AGG + chr1.1:73729453-73729472 None:intergenic 50.0%
!! ACGGTCTCAGGTGTTGAGTA+TGG + chr1.1:73729401-73729420 None:intergenic 50.0%
!! ATGCCACTGACTTGCTGAAG+AGG + chr1.1:73730052-73730071 None:intergenic 50.0%
!! CGGTCTCAGGTGTTGAGTAT+GGG + chr1.1:73729400-73729419 None:intergenic 50.0%
ACGAAGGGGATACCGTTTCG+GGG - chr1.1:73728076-73728095 MS.gene37690:intron 55.0%
CTGCAGGTAACATCTCCTGG+AGG - chr1.1:73729284-73729303 MS.gene37690:intron 55.0%
GGGTACAGGTAGGACCGAAA+TGG + chr1.1:73729892-73729911 None:intergenic 55.0%
!! TTCTGGAGTTCCGATCACCC+TGG - chr1.1:73728126-73728145 MS.gene37690:intron 55.0%
GCGCCTCTTCAGCAAGTCAG+TGG - chr1.1:73730046-73730065 MS.gene37690:CDS 60.0%
! TGCCGAGCTCAGAGAGGCAT+TGG - chr1.1:73729695-73729714 MS.gene37690:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 73727952 73730085 73727952 ID=MS.gene37690
chr1.1 mRNA 73727952 73730085 73727952 ID=MS.gene37690.t1;Parent=MS.gene37690
chr1.1 exon 73729876 73730085 73729876 ID=MS.gene37690.t1.exon1;Parent=MS.gene37690.t1
chr1.1 CDS 73729876 73730085 73729876 ID=cds.MS.gene37690.t1;Parent=MS.gene37690.t1
chr1.1 exon 73728561 73728747 73728561 ID=MS.gene37690.t1.exon2;Parent=MS.gene37690.t1
chr1.1 CDS 73728561 73728747 73728561 ID=cds.MS.gene37690.t1;Parent=MS.gene37690.t1
chr1.1 exon 73728263 73728370 73728263 ID=MS.gene37690.t1.exon3;Parent=MS.gene37690.t1
chr1.1 CDS 73728263 73728370 73728263 ID=cds.MS.gene37690.t1;Parent=MS.gene37690.t1
chr1.1 exon 73727952 73728085 73727952 ID=MS.gene37690.t1.exon4;Parent=MS.gene37690.t1
chr1.1 CDS 73727952 73728085 73727952 ID=cds.MS.gene37690.t1;Parent=MS.gene37690.t1
Gene Sequence

>MS.gene37690

ATGGAAAAGAAAAACGCGAAGATGTGGATGGTGTTGATGTGTTTGGTGTTTATCTTCGTTGATCGAATTGAATCGTTATCTGTAACTGTGCAAGACGTTGAATGTCTCTATGAGTATGTGCTTTACGAAGGGGATACCGTTTCGGGGAATTTTGTTGTCGTTGACCATGATATTTTCTGGAGTTCCGATCACCCTGGCATTGATTTCACGGTAAGTCGAATCTCAATTCCACAATTCCGTTTTTCTGTGCAATTTTGATATTTTTTTATTGTTTTTTTTTATCTTATGCGATTGCCTTGCCCCAGTTCATAATTTGTTGAATTACGATTTATGAAGTCATTGGGGTGTTTGTATTTTGCTTTGGTGAGGGAAAAAATGTTTTTTTATTTTTAGGGTGTTTAAGAGGGATTTTGATGTGTCATATAATGAAGATCAATTATTATTCATGTAGCTTTGAATCATATATAATGATACTGTAACTGAATATAGAATTGAGGTTTAGGTGTCCAAGGAAGTTTTTTTTATGCCTATAGGTAAACTAAAGACCAAAAAGAGTTGCCTGTTGGCTTGATTATATTTTCCTTAAGCTGCATTATATCAATTCCACTTAAATGTGATTAAGTTTTATTATATCAATTCCACTTTGTATGATTTAATGAATGATTATTGGTGAATCCTTGGCAGTACCTTCTGTAACATTATTGTAAACTCGTCTAGTACTGAAACTTTGGCCAAAATGAACGTCAGCACTTGTTTTGTTCGGATGTAACTGATCTTTGTTAGTGCGTAATAGGATTAAATCAATTTGATCAATCCATGTTGGATCAGCGTGTTTGTGAGTTATATAAATCAGAACATGAAAATTGAATCGTAGAAAGTGATGACTGAAGATGGTTGAAGGTAGGAATAGGGAGGTAAAAGATAAACACTTAAAGGACATCATGTATTTTTAGTATTTTATTCCCATTTGGCTGGTGCTGATATTCAAATGGATGGTCTTTATTTTGTGCACTTAAATGGATTTATTCTCAAGCTTTTATGCTTTTGTATATAGCAAACTGCGGCTTGAGACATAGATACATTGAGGCTTGACTATATTGTTATTGGCTGTGGGAGTCTCATTGGTTACCCCTATGCTTGAAGGAGGTTTTGTGTGAAAAATGATGTGTGCTAGCTAGTATTATATTATAGGAACAACAGTTGAAGCCATCATTTGTTATTATAATGAATCTATTATTGCTTACTAATCAGACTCAGTTCAGAATGACATACCCGAATTTTCATATTGTTTTGTAACTTTAGCTTTTCAGATATCCTAATTTTCGCAGTTATCTGCAGGTAACATCTCCTGGAGGTAATGTTGTCCAAGATATCAAAGGAACATCTGGAGACAAATTTCAATTTAAGGCCCCAGTACACGGAATGTATAAATTTTGTTTTCATAACCCATACTCAACACCTGAGACCGTTTCTTTCTATATCCATGTTGGTCATATTCCCTCTGAGCATGACCTTGCCAAAGATGGTATGTTCTACATGAAAGCAGGCTCTTTTAATTTATTACACTATCATATTACTATATTCATTTGTTGAAGTGTTAAATTTACTATTTACCTGACTTACTTCTTGACATTTCTGATGAATGGTCTGAGGTCTATTTTATTTTCCTATGTTTTGGTTATCTTGCCTTCCGTTTAAACTTTGATGGTTTGCAGAGCATTTGGACCCAATTAATGTTAAAATTGCCGAGCTCAGAGAGGCATTGGAATCTGTTACAGCTGAACAAAAGTACTTGAGAGCTCGAGATGCAAGGCATCGCCACAGTAAGTAGTTTTCTTTTCCATCAACTTTCATTGTTCTACTTTGAAAATTCAATTTTGGTAGTCTTGTCATCATTCTTGTGAACATATATGATATATGGACACATTTCTTTTTCCCCATTTCGGTCCTACCTGTACCCTTCTTTTATTCTTACTTACTCAACGCTGTGTTGTTTGTAGCGAACGAGAGTACACATAAGCGTGTTATCTTCTACACTGTTGGAGAGTACCTTCTGTTGGCTGCTGTTAGTGCACTGCAAGTCATGTACATCAGGCGCCTCTTCAGCAAGTCAGTGGCATACAACCGTGTTTGA
Protein sequence

>MS.gene37690.t1

MEKKNAKMWMVLMCLVFIFVDRIESLSVTVQDVECLYEYVLYEGDTVSGNFVVVDHDIFWSSDHPGIDFTVTSPGGNVVQDIKGTSGDKFQFKAPVHGMYKFCFHNPYSTPETVSFYIHVGHIPSEHDLAKDEHLDPINVKIAELREALESVTAEQKYLRARDARHRHTNESTHKRVIFYTVGEYLLLAAVSALQVMYIRRLFSKSVAYNRV