Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37862.t1 | XP_013467478.1 | 73.7 | 1205 | 278 | 3 | 1 | 1167 | 1 | 1204 | 0.00E+00 | 1550.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37862.t1 | Q56YN8 | 60.6 | 1204 | 434 | 4 | 1 | 1165 | 1 | 1203 | 0.0e+00 | 1280.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37862.t1 | A0A072VIT6 | 73.7 | 1205 | 278 | 3 | 1 | 1167 | 25 | 1228 | 0.0e+00 | 1550.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056169 | MS.gene37862 | PPI |
| MS.gene45748 | MS.gene37862 | PPI |
| MS.gene036083 | MS.gene37862 | PPI |
| MS.gene024068 | MS.gene37862 | PPI |
| MS.gene016667 | MS.gene37862 | PPI |
| MS.gene033508 | MS.gene37862 | PPI |
| MS.gene058789 | MS.gene37862 | PPI |
| MS.gene95250 | MS.gene37862 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37862.t1 | MTR_1g051825 | 81.577 | 1205 | 183 | 4 | 1 | 1167 | 1 | 1204 | 0.0 | 1907 |
| MS.gene37862.t1 | MTR_1g051825 | 81.577 | 1205 | 183 | 4 | 1 | 1167 | 25 | 1228 | 0.0 | 1905 |
| MS.gene37862.t1 | MTR_3g110058 | 60.929 | 581 | 170 | 7 | 122 | 699 | 1 | 527 | 0.0 | 632 |
| MS.gene37862.t1 | MTR_3g110055 | 61.589 | 453 | 129 | 6 | 698 | 1106 | 3 | 454 | 6.87e-163 | 493 |
| MS.gene37862.t1 | MTR_8g037325 | 24.124 | 1256 | 759 | 40 | 1 | 1149 | 1 | 1169 | 1.00e-58 | 221 |
| MS.gene37862.t1 | MTR_5g086975 | 79.851 | 134 | 21 | 2 | 223 | 352 | 36 | 167 | 3.31e-56 | 197 |
| MS.gene37862.t1 | MTR_5g086975 | 79.348 | 92 | 6 | 1 | 412 | 503 | 168 | 246 | 3.20e-38 | 145 |
| MS.gene37862.t1 | MTR_5g087290 | 94.805 | 77 | 4 | 0 | 427 | 503 | 1 | 77 | 1.59e-44 | 157 |
| MS.gene37862.t1 | MTR_8g072890 | 22.970 | 788 | 476 | 24 | 1 | 715 | 14 | 743 | 2.15e-28 | 124 |
| MS.gene37862.t1 | MTR_7g091420 | 26.425 | 386 | 231 | 11 | 1 | 360 | 9 | 367 | 1.03e-17 | 87.4 |
| MS.gene37862.t1 | MTR_0003s0460 | 23.468 | 669 | 398 | 23 | 523 | 1108 | 509 | 1146 | 2.26e-16 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37862.t1 | AT2G27170 | 63.154 | 1205 | 404 | 4 | 1 | 1166 | 1 | 1204 | 0.0 | 1483 |
| MS.gene37862.t1 | AT2G27170 | 63.154 | 1205 | 404 | 4 | 1 | 1166 | 1 | 1204 | 0.0 | 1483 |
| MS.gene37862.t1 | AT2G27170 | 61.217 | 1052 | 369 | 3 | 1 | 1014 | 1 | 1051 | 0.0 | 1256 |
| MS.gene37862.t1 | AT2G27170 | 61.217 | 1052 | 369 | 3 | 1 | 1014 | 1 | 1051 | 0.0 | 1256 |
| MS.gene37862.t1 | AT3G47460 | 25.040 | 1254 | 750 | 44 | 1 | 1149 | 1 | 1169 | 3.84e-61 | 229 |
| MS.gene37862.t1 | AT3G47460 | 24.940 | 1251 | 752 | 44 | 1 | 1149 | 1 | 1166 | 1.50e-60 | 227 |
| MS.gene37862.t1 | AT5G62410 | 24.803 | 762 | 462 | 25 | 1 | 704 | 1 | 709 | 2.71e-41 | 166 |
| MS.gene37862.t1 | AT5G62410 | 30.233 | 215 | 124 | 4 | 935 | 1149 | 981 | 1169 | 6.58e-16 | 84.0 |
| MS.gene37862.t1 | AT5G48600 | 25.068 | 367 | 220 | 11 | 1 | 329 | 24 | 373 | 2.80e-15 | 82.0 |
| MS.gene37862.t1 | AT5G48600 | 25.068 | 367 | 220 | 11 | 1 | 329 | 24 | 373 | 2.92e-15 | 81.6 |
| MS.gene37862.t1 | AT3G54670 | 22.006 | 718 | 416 | 25 | 3 | 652 | 11 | 652 | 1.40e-12 | 73.2 |
Find 194 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCAGGTCTTTGATTTCA+TGG | 0.149613 | 5.3:-70175722 | None:intergenic |
| TGCAAAGATCAAAACATTTC+TGG | 0.157693 | 5.3:+70172773 | MS.gene37862:CDS |
| AATTTCAGCATTCTGCTTAA+TGG | 0.166386 | 5.3:-70174635 | None:intergenic |
| AGTCCAAGAGTCGGGAATTT+AGG | 0.180530 | 5.3:+70175977 | MS.gene37862:CDS |
| AAAGTTGCCGACAAAATATT+TGG | 0.181301 | 5.3:+70185358 | MS.gene37862:CDS |
| CCTTGTTGTACAACATAATA+TGG | 0.190231 | 5.3:-70167542 | None:intergenic |
| TTGAACTTCTTTCTTATATA+TGG | 0.197464 | 5.3:-70168024 | None:intergenic |
| AAGCAACAAGCTCCTCTTTC+AGG | 0.249675 | 5.3:-70175737 | None:intergenic |
| AAGTATTAATATTTGTTCTA+TGG | 0.253455 | 5.3:-70171598 | None:intergenic |
| TAACAAGTTCATTAATCTTT+TGG | 0.253995 | 5.3:-70175333 | None:intergenic |
| AAGAGTATACCAAGAAAATA+AGG | 0.255492 | 5.3:+70176359 | MS.gene37862:CDS |
| GCACTTTCAAAGGTGTTTCT+AGG | 0.266104 | 5.3:+70182576 | MS.gene37862:CDS |
| TGTTATATTATAGGTCCTTA+TGG | 0.278779 | 5.3:+70171778 | MS.gene37862:intron |
| TTACCAACACAGTTAACTTT+AGG | 0.286165 | 5.3:-70164422 | None:intergenic |
| AGAAGACTCGATGGATGAAC+TGG | 0.307826 | 5.3:+70169827 | MS.gene37862:CDS |
| CAGGTTAGCAACTCAATAAT+TGG | 0.323752 | 5.3:-70172806 | None:intergenic |
| GCAAGTGCATTAGAAAATAA+TGG | 0.330160 | 5.3:-70175448 | None:intergenic |
| TCCACAAATGCAGATAAAAC+TGG | 0.333767 | 5.3:-70165887 | None:intergenic |
| CAAGTTCAGAGAATACTTCT+TGG | 0.334898 | 5.3:-70182604 | None:intergenic |
| CAAATTATTCTCCAAATCAT+TGG | 0.343404 | 5.3:-70169522 | None:intergenic |
| AACAGTTATCTGCAAGAATC+TGG | 0.344787 | 5.3:+70174384 | MS.gene37862:CDS |
| TAAGCTGTTCAATCTGATTC+TGG | 0.349659 | 5.3:-70175608 | None:intergenic |
| CAGAGTCTTTCATCAAGGTT+AGG | 0.353698 | 5.3:-70167680 | None:intergenic |
| TTTCAACATGTTCATTAAAC+AGG | 0.356991 | 5.3:+70164148 | None:intergenic |
| CAGACACAAAATGCTGAATA+AGG | 0.357538 | 5.3:+70185457 | MS.gene37862:CDS |
| TCGGCAACTTTCACTAACTC+TGG | 0.367201 | 5.3:-70185346 | None:intergenic |
| TACCAAGAAAATAAGGGAAC+TGG | 0.370065 | 5.3:+70176366 | MS.gene37862:CDS |
| CGAGTATAATAGAAAACTTC+AGG | 0.372965 | 5.3:+70176275 | MS.gene37862:intron |
| CAAAACATTTCTGGTGTTCA+TGG | 0.377818 | 5.3:+70172782 | MS.gene37862:CDS |
| TCAGGAAGATGCTAATGAAT+TGG | 0.385056 | 5.3:+70176293 | MS.gene37862:CDS |
| AAGTTGCCGACAAAATATTT+GGG | 0.390982 | 5.3:+70185359 | MS.gene37862:CDS |
| TTGGACTTACTGAAGGAAAT+AGG | 0.391036 | 5.3:+70167708 | MS.gene37862:CDS |
| TAGAACAAATATTAATACTT+TGG | 0.396866 | 5.3:+70171601 | MS.gene37862:CDS |
| TTCTAATGCACTTGCGAAGA+AGG | 0.400121 | 5.3:+70175456 | MS.gene37862:CDS |
| GTCCAAGAGTCGGGAATTTA+GGG | 0.400647 | 5.3:+70175978 | MS.gene37862:CDS |
| TGCTCTAGAATTCATTAATC+AGG | 0.401763 | 5.3:+70185432 | MS.gene37862:CDS |
| ATGACATCATCAGAACTCTT+TGG | 0.407533 | 5.3:-70173218 | None:intergenic |
| CAGTCCATGAAGCAGTTGTC+GGG | 0.415100 | 5.3:+70184593 | MS.gene37862:CDS |
| ACATGAGAAATCCAATGATT+TGG | 0.415421 | 5.3:+70169511 | MS.gene37862:CDS |
| TGCTAATGAATTGGAGCAAC+TGG | 0.416178 | 5.3:+70176302 | MS.gene37862:CDS |
| CATAGATATGATCCGGCGCC+TGG | 0.419512 | 5.3:+70185282 | MS.gene37862:intron |
| AGTCTTGATCATGCAATTCC+TGG | 0.420007 | 5.3:+70171867 | MS.gene37862:CDS |
| TAATACTTTGGAATTTCAAA+TGG | 0.428465 | 5.3:+70171613 | MS.gene37862:CDS |
| ATTAGACCGTTCACATAACT+TGG | 0.429263 | 5.3:-70171636 | None:intergenic |
| CTCCCTAAATTCCCGACTCT+TGG | 0.429741 | 5.3:-70175980 | None:intergenic |
| GGAGATTGTTGATCTTGAAC+AGG | 0.433134 | 5.3:+70170298 | MS.gene37862:CDS |
| AACTGAAGTGATGAATTTGC+TGG | 0.436238 | 5.3:+70167493 | MS.gene37862:CDS |
| ATGAATTTGCTGGAAAGTGC+TGG | 0.437241 | 5.3:+70167503 | MS.gene37862:CDS |
| GCAGTTGGTGCTAATGGATC+TGG | 0.438920 | 5.3:+70165534 | MS.gene37862:intron |
| AGTATTCTCTGAACTTGTAC+AGG | 0.442344 | 5.3:+70182610 | MS.gene37862:CDS |
| CGAACTTCCTCTCATCTTGA+AGG | 0.443872 | 5.3:-70171682 | None:intergenic |
| TTGAAAATAATGCAGGATAC+AGG | 0.445527 | 5.3:+70167768 | MS.gene37862:CDS |
| TGAACCAGACCATCATATAT+AGG | 0.445765 | 5.3:-70169861 | None:intergenic |
| AGAAGAAAAGAAAGCGGGGT+TGG | 0.450534 | 5.3:+70175861 | MS.gene37862:CDS |
| AGAATCAGATTGAACAGCTT+AGG | 0.450820 | 5.3:+70175610 | MS.gene37862:CDS |
| TTGAAGTTACTGCAGGAAAC+AGG | 0.452589 | 5.3:+70172852 | MS.gene37862:CDS |
| AAATTCAATTTCTTTAAAAG+AGG | 0.455404 | 5.3:-70173242 | None:intergenic |
| TCAAAAGCATCTGATGTCAA+TGG | 0.456925 | 5.3:-70176391 | None:intergenic |
| CAGTCCTATATATGATGGTC+TGG | 0.457209 | 5.3:+70169857 | MS.gene37862:CDS |
| GGTAGCTCGTACCAATGGTT+TGG | 0.459742 | 5.3:+70174420 | MS.gene37862:CDS |
| AGAGTATACCAAGAAAATAA+GGG | 0.463899 | 5.3:+70176360 | MS.gene37862:CDS |
| GAATCAGATTGAACAGCTTA+GGG | 0.472638 | 5.3:+70175611 | MS.gene37862:CDS |
| TTCATTCTCTCTGCTCCATA+AGG | 0.473244 | 5.3:-70171793 | None:intergenic |
| AATCTTTAATATTCCTCCGT+TGG | 0.474032 | 5.3:-70176700 | None:intergenic |
| GTATGGCAAAGATAAGTGTA+AGG | 0.477924 | 5.3:-70184637 | None:intergenic |
| AGTCCTAAAGTTAACTGTGT+TGG | 0.484406 | 5.3:+70164419 | MS.gene37862:CDS |
| TGCTGATACTTCAGAAACCT+TGG | 0.484543 | 5.3:-70169462 | None:intergenic |
| TGACGAGATTGATGCAGCAT+TGG | 0.484807 | 5.3:+70184691 | MS.gene37862:CDS |
| TGACAAGCAGAGAAAATCCT+TGG | 0.487457 | 5.3:+70167995 | MS.gene37862:CDS |
| CTTATATATGGCATATTCCA+AGG | 0.488141 | 5.3:-70168012 | None:intergenic |
| GGAGCGTTTACTCTGTTAAG+TGG | 0.496993 | 5.3:-70173182 | None:intergenic |
| CTACGCTCCAGCTTTCAGTC+AGG | 0.498620 | 5.3:+70173274 | MS.gene37862:CDS |
| CAAAAGCATCTGATGTCAAT+GGG | 0.501917 | 5.3:-70176390 | None:intergenic |
| CAGAAAGAAGAAAAGAAAGC+GGG | 0.502800 | 5.3:+70175856 | MS.gene37862:intron |
| GAATCTGGATGTGGCTTCAA+AGG | 0.507465 | 5.3:+70174399 | MS.gene37862:CDS |
| AAAATCAGTCCTATATATGA+TGG | 0.509132 | 5.3:+70169852 | MS.gene37862:CDS |
| TCGTGATCAGTGGCTTCAAA+AGG | 0.510625 | 5.3:+70170277 | MS.gene37862:CDS |
| TGCTGGATCACATCTCTGTA+TGG | 0.512327 | 5.3:-70184654 | None:intergenic |
| TCTGGTTATGATGACGAAGA+AGG | 0.516884 | 5.3:+70182646 | MS.gene37862:CDS |
| TTCTCTTTACAGGAAGGGGC+TGG | 0.517867 | 5.3:+70165860 | MS.gene37862:intron |
| TCAATAGAACGCACTTTCAA+AGG | 0.519121 | 5.3:+70182566 | MS.gene37862:CDS |
| GTGCACTTACGCCGGACGAT+TGG | 0.519177 | 5.3:+70167287 | MS.gene37862:CDS |
| GATGAAAGACTCTGAGCGAT+TGG | 0.520602 | 5.3:+70167689 | MS.gene37862:CDS |
| AGAGTCTTTCATCAAGGTTA+GGG | 0.524684 | 5.3:-70167679 | None:intergenic |
| GAGGAGAAGAAAACAAGAGC+TGG | 0.526816 | 5.3:+70175906 | MS.gene37862:CDS |
| CGGCAACTTTCACTAACTCT+GGG | 0.529170 | 5.3:-70185345 | None:intergenic |
| ACTGCAGTTGAAGTTACTGC+AGG | 0.531496 | 5.3:+70172845 | MS.gene37862:CDS |
| CCCGCTGGATTTGCTTCCTG+AGG | 0.533814 | 5.3:-70184104 | None:intergenic |
| GAAGAGGGTTGAATACAGTT+CGG | 0.534510 | 5.3:+70172744 | MS.gene37862:CDS |
| AAGCTAACCTGACTGAAAGC+TGG | 0.536188 | 5.3:-70173281 | None:intergenic |
| TCAAGACAAGGATGGTCCTC+AGG | 0.537494 | 5.3:+70184088 | MS.gene37862:CDS |
| GAGTGTGTGCTGTGTCTGCC+AGG | 0.538151 | 5.3:-70185300 | None:intergenic |
| TGAAAGTTTGAAAATAATGC+AGG | 0.538235 | 5.3:+70167761 | MS.gene37862:CDS |
| TTGCAAGAATGACCGTATTG+AGG | 0.539251 | 5.3:+70175758 | MS.gene37862:CDS |
| TGTTGCTGAGTCCAAGAGTC+GGG | 0.540554 | 5.3:+70175969 | MS.gene37862:CDS |
| TGACTTCCATAGATATGATC+CGG | 0.540649 | 5.3:+70185275 | MS.gene37862:intron |
| ACAGTCCATGAAGCAGTTGT+CGG | 0.541919 | 5.3:+70184592 | MS.gene37862:CDS |
| AGACAAGCTGAACTTGATGC+AGG | 0.548754 | 5.3:+70176836 | MS.gene37862:CDS |
| CAGAGATAGAAGAGCTTAAG+CGG | 0.550019 | 5.3:+70175398 | MS.gene37862:CDS |
| AGTATTCTTTATCAAAAGCA+AGG | 0.550710 | 5.3:+70170224 | MS.gene37862:CDS |
| TCGCTCAGAGTCTTTCATCA+AGG | 0.551421 | 5.3:-70167685 | None:intergenic |
| GTATTTAGACAAGAGGTTGA+AGG | 0.551926 | 5.3:+70167929 | MS.gene37862:CDS |
| GTGCTGTGTCTGCCAGGCGC+CGG | 0.552037 | 5.3:-70185294 | None:intergenic |
| TTCACTCAATAACCTCAATA+CGG | 0.553023 | 5.3:-70175770 | None:intergenic |
| GCTCTCTTCAAACATGATGC+AGG | 0.553902 | 5.3:+70170322 | MS.gene37862:CDS |
| CCATATTATGTTGTACAACA+AGG | 0.554517 | 5.3:+70167542 | MS.gene37862:CDS |
| CCACAGTACAGAACTGCTGT+TGG | 0.558872 | 5.3:+70184716 | MS.gene37862:CDS |
| AGAACTTACGAAGTGAGGAT+AGG | 0.559469 | 5.3:+70165737 | MS.gene37862:CDS |
| CGGGAATTTAGGGAGGCTAA+AGG | 0.559624 | 5.3:+70175988 | MS.gene37862:CDS |
| TTGTACAGTATTTAGACAAG+AGG | 0.560584 | 5.3:+70167922 | MS.gene37862:CDS |
| ATCAGCAAAGATGTATAATG+AGG | 0.561897 | 5.3:+70169478 | MS.gene37862:CDS |
| CCTCAGGAAGCAAATCCAGC+GGG | 0.563921 | 5.3:+70184104 | MS.gene37862:CDS |
| GTCCATGAAGCAGTTGTCGG+GGG | 0.564381 | 5.3:+70184595 | MS.gene37862:CDS |
| TGAAATCAAAGACCTGAAAG+AGG | 0.570561 | 5.3:+70175725 | MS.gene37862:CDS |
| TAATTCAGACAATCGTATCC+TGG | 0.573639 | 5.3:+70165922 | MS.gene37862:CDS |
| ACTGAGAGCAGAAGTTGAGA+AGG | 0.575102 | 5.3:+70171836 | MS.gene37862:CDS |
| TCAAAGGTAGCTCGTACCAA+TGG | 0.575939 | 5.3:+70174415 | MS.gene37862:CDS |
| CTTTCAGAACTTACGAAGTG+AGG | 0.578183 | 5.3:+70165732 | MS.gene37862:CDS |
| CCACAAATGCAGATAAAACT+GGG | 0.578954 | 5.3:-70165886 | None:intergenic |
| TTGGACTGCATAACACTGGA+AGG | 0.580092 | 5.3:+70174439 | MS.gene37862:CDS |
| TCTGTGATCATAAAATCCTC+CGG | 0.586231 | 5.3:-70174587 | None:intergenic |
| GATAGAAGAAGCTCGGACCA+AGG | 0.587012 | 5.3:+70169445 | MS.gene37862:intron |
| TGTTATGCAGTCCAAACCAT+TGG | 0.589083 | 5.3:-70174431 | None:intergenic |
| ACCAAGAAAATAAGGGAACT+GGG | 0.589324 | 5.3:+70176367 | MS.gene37862:CDS |
| GATACAAATAGAAGACTCGA+TGG | 0.590774 | 5.3:+70169818 | MS.gene37862:CDS |
| TGTCTAAATACTGTACAACT+TGG | 0.591371 | 5.3:-70167917 | None:intergenic |
| GGGAGAGTAGAAAAGTACAT+TGG | 0.591452 | 5.3:+70184125 | MS.gene37862:CDS |
| TGAATTTGCTGGAAAGTGCT+GGG | 0.591574 | 5.3:+70167504 | MS.gene37862:CDS |
| CGGCTTAATGTTGAAATGCA+TGG | 0.593116 | 5.3:+70171554 | MS.gene37862:CDS |
| CCTCTGTGGCAATTTGCTCT+CGG | 0.593832 | 5.3:-70164391 | None:intergenic |
| AGTTGCCGACAAAATATTTG+GGG | 0.597473 | 5.3:+70185360 | MS.gene37862:CDS |
| ATGTGCAGGATGTAAGAAGA+GGG | 0.599871 | 5.3:+70172729 | MS.gene37862:intron |
| TATCTGCAAGAATCTGGATG+TGG | 0.602042 | 5.3:+70174390 | MS.gene37862:CDS |
| TGCTCAGCTTAAGCTTGCAG+AGG | 0.602093 | 5.3:+70168049 | MS.gene37862:CDS |
| CTCTTTGGATAAGTGACATG+TGG | 0.603179 | 5.3:-70173203 | None:intergenic |
| AGTCCATGAAGCAGTTGTCG+GGG | 0.604876 | 5.3:+70184594 | MS.gene37862:CDS |
| AGAGATAGAAGAGCTTAAGC+GGG | 0.605946 | 5.3:+70175399 | MS.gene37862:CDS |
| TTATGTTGTACAACAAGGAA+AGG | 0.607085 | 5.3:+70167547 | MS.gene37862:CDS |
| AGCTGACGGAAGAAATTGAA+CGG | 0.609550 | 5.3:+70171534 | MS.gene37862:CDS |
| GTACTAGAGTTTATGAAGAG+AGG | 0.609666 | 5.3:+70167733 | MS.gene37862:CDS |
| ACTTGTTACTGAGCAGCAGA+AGG | 0.609999 | 5.3:+70175348 | MS.gene37862:CDS |
| GTAAAGCTGCTCGTGATCAG+TGG | 0.610771 | 5.3:+70170267 | MS.gene37862:CDS |
| AAATGGCCAAGTTATGTGAA+CGG | 0.610792 | 5.3:+70171630 | MS.gene37862:CDS |
| GTATTCTCTGAACTTGTACA+GGG | 0.613150 | 5.3:+70182611 | MS.gene37862:CDS |
| ATGTTGCTGAGTCCAAGAGT+CGG | 0.613347 | 5.3:+70175968 | MS.gene37862:CDS |
| TGAGCGATTGGACTTACTGA+AGG | 0.613609 | 5.3:+70167701 | MS.gene37862:CDS |
| ATTTAGGGAGGCTAAAGGAT+CGG | 0.617723 | 5.3:+70175993 | MS.gene37862:CDS |
| CTAATCTAACCACTAATCTG+AGG | 0.619781 | 5.3:+70175887 | MS.gene37862:CDS |
| TAATATCAGTGCTAGATCAA+CGG | 0.620213 | 5.3:+70182534 | MS.gene37862:CDS |
| TATGGCAAAGATAAGTGTAA+GGG | 0.620771 | 5.3:-70184636 | None:intergenic |
| TGTCTCTGAATAGGTTGACA+AGG | 0.622083 | 5.3:+70167259 | MS.gene37862:intron |
| TGAAATTATTCACATCAAAG+AGG | 0.623573 | 5.3:+70174651 | MS.gene37862:CDS |
| ATTCTCTGAACTTGTACAGG+GGG | 0.623659 | 5.3:+70182613 | MS.gene37862:CDS |
| ATCACTCAACACGAAACGAA+TGG | 0.624342 | 5.3:-70165707 | None:intergenic |
| TGGTTGTGATACGGATATCG+AGG | 0.624988 | 5.3:+70171574 | MS.gene37862:CDS |
| TGGTTTGGACTGCATAACAC+TGG | 0.626774 | 5.3:+70174435 | MS.gene37862:CDS |
| CTCTGAATAGGTTGACAAGG+AGG | 0.627364 | 5.3:+70167262 | MS.gene37862:intron |
| CATTGATCATTTAACACCAG+AGG | 0.629638 | 5.3:+70175674 | MS.gene37862:CDS |
| TGAAATGCATGGTTGTGATA+CGG | 0.629757 | 5.3:+70171565 | MS.gene37862:CDS |
| AAGGCGGCCTTCAAGATGAG+AGG | 0.631004 | 5.3:+70171675 | MS.gene37862:CDS |
| GAGAAGAAAACAAGAGCTGG+AGG | 0.633335 | 5.3:+70175909 | MS.gene37862:CDS |
| TCTCAGATGTCGCATTAACA+CGG | 0.637280 | 5.3:-70185405 | None:intergenic |
| TTGGACATGATAGGTACCAA+CGG | 0.638694 | 5.3:+70176684 | MS.gene37862:intron |
| ATCAGTGCTAGATCAACGGA+AGG | 0.640353 | 5.3:+70182538 | MS.gene37862:CDS |
| TATTGAAAAGCGACAAACAA+CGG | 0.641765 | 5.3:+70169592 | MS.gene37862:CDS |
| AATGTGCAGGATGTAAGAAG+AGG | 0.642397 | 5.3:+70172728 | MS.gene37862:intron |
| GAGGTTGAAGGAACTAGATG+CGG | 0.643064 | 5.3:+70167941 | MS.gene37862:CDS |
| TAATGAATTGGAGCAACTGG+TGG | 0.645969 | 5.3:+70176305 | MS.gene37862:CDS |
| AGGAGGAAGTGCACTTACGC+CGG | 0.651963 | 5.3:+70167279 | MS.gene37862:CDS |
| GAAGACTCGATGGATGAACT+GGG | 0.652269 | 5.3:+70169828 | MS.gene37862:CDS |
| GTACATTGGAGTGAAAGTGA+AGG | 0.655358 | 5.3:+70184139 | MS.gene37862:CDS |
| TGAACTTGATGCAGGAGATG+AGG | 0.656346 | 5.3:+70176844 | MS.gene37862:CDS |
| AATTATTCACATCAAAGAGG+AGG | 0.657337 | 5.3:+70174654 | MS.gene37862:CDS |
| TAGACTAATGAAGAACGAGA+AGG | 0.658964 | 5.3:+70170196 | MS.gene37862:intron |
| GGTTGTGATACGGATATCGA+GGG | 0.663956 | 5.3:+70171575 | MS.gene37862:CDS |
| GCAGAAAGAAGAAAAGAAAG+CGG | 0.664155 | 5.3:+70175855 | MS.gene37862:intron |
| CCGAGAGCAAATTGCCACAG+AGG | 0.667879 | 5.3:+70164391 | MS.gene37862:CDS |
| GATGATGATCAAGACAAGGA+TGG | 0.675733 | 5.3:+70184080 | MS.gene37862:CDS |
| TATTCTCTGAACTTGTACAG+GGG | 0.676095 | 5.3:+70182612 | MS.gene37862:CDS |
| TCCATGAAGCAGTTGTCGGG+GGG | 0.684006 | 5.3:+70184596 | MS.gene37862:CDS |
| CAAGAGTCGGGAATTTAGGG+AGG | 0.685337 | 5.3:+70175981 | MS.gene37862:CDS |
| CCAACAGCAGTTCTGTACTG+TGG | 0.690057 | 5.3:-70184716 | None:intergenic |
| TCCTCAGGAAGCAAATCCAG+CGG | 0.691538 | 5.3:+70184103 | MS.gene37862:CDS |
| CAACTTTCACTAACTCTGGG+CGG | 0.692843 | 5.3:-70185342 | None:intergenic |
| GACTTACTGAAGGAAATAGG+TGG | 0.698794 | 5.3:+70167711 | MS.gene37862:CDS |
| TTTAGGACTGAAATCCTCTG+TGG | 0.701010 | 5.3:-70164405 | None:intergenic |
| TCATCATAACCAGATGACCA+TGG | 0.701743 | 5.3:-70182637 | None:intergenic |
| AATGAATTGGAGCAACTGGT+GGG | 0.704461 | 5.3:+70176306 | MS.gene37862:CDS |
| TTCTCTGAACTTGTACAGGG+GGG | 0.709062 | 5.3:+70182614 | MS.gene37862:CDS |
| CTCAGGAAGCAAATCCAGCG+GGG | 0.718149 | 5.3:+70184105 | MS.gene37862:CDS |
| TGATGATGATGATCAAGACA+AGG | 0.722714 | 5.3:+70184076 | MS.gene37862:CDS |
| AGAAAGAAGAAAAGAAAGCG+GGG | 0.725332 | 5.3:+70175857 | MS.gene37862:intron |
| TGCTTGTAGGTGAAATCACG+TGG | 0.754236 | 5.3:+70175579 | MS.gene37862:intron |
| GACATGATAGGTACCAACGG+AGG | 0.763583 | 5.3:+70176687 | MS.gene37862:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 70164155 | 70185477 | 70164155 | ID=MS.gene37862 |
| chr5.3 | mRNA | 70164155 | 70185477 | 70164155 | ID=MS.gene37862.t1;Parent=MS.gene37862 |
| chr5.3 | exon | 70164155 | 70164169 | 70164155 | ID=MS.gene37862.t1.exon1;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70164155 | 70164169 | 70164155 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70164365 | 70164440 | 70164365 | ID=MS.gene37862.t1.exon2;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70164365 | 70164440 | 70164365 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70165538 | 70165576 | 70165538 | ID=MS.gene37862.t1.exon3;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70165538 | 70165576 | 70165538 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70165707 | 70165774 | 70165707 | ID=MS.gene37862.t1.exon4;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70165707 | 70165774 | 70165707 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70165872 | 70165943 | 70165872 | ID=MS.gene37862.t1.exon5;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70165872 | 70165943 | 70165872 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70167272 | 70167351 | 70167272 | ID=MS.gene37862.t1.exon6;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70167272 | 70167351 | 70167272 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70167490 | 70167568 | 70167490 | ID=MS.gene37862.t1.exon7;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70167490 | 70167568 | 70167490 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70167672 | 70167789 | 70167672 | ID=MS.gene37862.t1.exon8;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70167672 | 70167789 | 70167672 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70167895 | 70168070 | 70167895 | ID=MS.gene37862.t1.exon9;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70167895 | 70168070 | 70167895 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70169446 | 70169691 | 70169446 | ID=MS.gene37862.t1.exon10;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70169446 | 70169691 | 70169446 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70169786 | 70169907 | 70169786 | ID=MS.gene37862.t1.exon11;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70169786 | 70169907 | 70169786 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70170199 | 70170343 | 70170199 | ID=MS.gene37862.t1.exon12;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70170199 | 70170343 | 70170199 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70171527 | 70171699 | 70171527 | ID=MS.gene37862.t1.exon13;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70171527 | 70171699 | 70171527 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70171791 | 70171890 | 70171791 | ID=MS.gene37862.t1.exon14;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70171791 | 70171890 | 70171791 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70172737 | 70172873 | 70172737 | ID=MS.gene37862.t1.exon15;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70172737 | 70172873 | 70172737 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70173091 | 70173295 | 70173091 | ID=MS.gene37862.t1.exon16;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70173091 | 70173295 | 70173091 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70174373 | 70174460 | 70174373 | ID=MS.gene37862.t1.exon17;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70174373 | 70174460 | 70174373 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70174557 | 70174687 | 70174557 | ID=MS.gene37862.t1.exon18;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70174557 | 70174687 | 70174557 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70175328 | 70175477 | 70175328 | ID=MS.gene37862.t1.exon19;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70175328 | 70175477 | 70175328 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70175588 | 70175779 | 70175588 | ID=MS.gene37862.t1.exon20;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70175588 | 70175779 | 70175588 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70175859 | 70176042 | 70175859 | ID=MS.gene37862.t1.exon21;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70175859 | 70176042 | 70175859 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70176287 | 70176416 | 70176287 | ID=MS.gene37862.t1.exon22;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70176287 | 70176416 | 70176287 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70176697 | 70176865 | 70176697 | ID=MS.gene37862.t1.exon23;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70176697 | 70176865 | 70176697 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70182521 | 70182667 | 70182521 | ID=MS.gene37862.t1.exon24;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70182521 | 70182667 | 70182521 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70184065 | 70184160 | 70184065 | ID=MS.gene37862.t1.exon25;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70184065 | 70184160 | 70184065 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70184566 | 70184740 | 70184566 | ID=MS.gene37862.t1.exon26;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70184566 | 70184740 | 70184566 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| chr5.3 | exon | 70185287 | 70185477 | 70185287 | ID=MS.gene37862.t1.exon27;Parent=MS.gene37862.t1 |
| chr5.3 | CDS | 70185287 | 70185477 | 70185287 | ID=cds.MS.gene37862.t1;Parent=MS.gene37862.t1 |
| Gene Sequence |
| Protein sequence |
