Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38278.t1 | AET00800.1 | 96.5 | 344 | 12 | 0 | 1 | 344 | 74 | 417 | 1.20E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38278.t1 | Q55C80 | 29.6 | 371 | 211 | 12 | 7 | 340 | 10 | 367 | 1.1e-38 | 162.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38278.t1 | B7FK54 | 96.5 | 344 | 12 | 0 | 1 | 344 | 1 | 344 | 8.6e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055808 | MS.gene38278 | 0.829591 | 4.73E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene38278 | 0.802644 | 5.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38278 | MS.gene067859 | PPI |
| MS.gene38278 | MS.gene41778 | PPI |
| MS.gene38278 | MS.gene042467 | PPI |
| MS.gene08162 | MS.gene38278 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38278.t1 | MTR_5g096040 | 96.512 | 344 | 12 | 0 | 1 | 344 | 74 | 417 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38278.t1 | AT5G63010 | 60.116 | 346 | 128 | 4 | 1 | 344 | 1 | 338 | 4.64e-153 | 434 |
Find 87 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAGTTAATAAGGTATT+TGG | 0.087837 | 5.3:-77686961 | None:intergenic |
| TTTGCAATTGTTGCTATTAA+AGG | 0.230758 | 5.3:+77687132 | MS.gene38278:CDS |
| TGATATCCATCAGCCAAATT+TGG | 0.233877 | 5.3:+77686810 | MS.gene38278:CDS |
| GAACTCTAAGGTCCACAAAA+TGG | 0.247499 | 5.3:+77686906 | MS.gene38278:CDS |
| ATCATAGCTTCCAGTTAATA+AGG | 0.268520 | 5.3:-77686968 | None:intergenic |
| TAACTCTATGTGCTTGTATC+TGG | 0.275517 | 5.3:+77686651 | MS.gene38278:CDS |
| CTAATTGAAGTCTCATTAAC+AGG | 0.277252 | 5.3:-77687030 | None:intergenic |
| GACCCAAATACCTTATTAAC+TGG | 0.308590 | 5.3:+77686958 | MS.gene38278:CDS |
| CTTCATCCAAGGCCTTGTTT+TGG | 0.318096 | 5.3:+77687089 | MS.gene38278:CDS |
| GAGCCAGTATATACCAAATT+TGG | 0.327127 | 5.3:-77686823 | None:intergenic |
| TTAGCTTAGGTGGAGGAGTT+TGG | 0.334473 | 5.3:+77687049 | MS.gene38278:CDS |
| TTCTCTTCATGAATCCAATC+TGG | 0.334547 | 5.3:+77686735 | MS.gene38278:CDS |
| CTCTTCTTGTATTTCCAGAT+TGG | 0.335556 | 5.3:-77686749 | None:intergenic |
| TTCCAGTTAATAAGGTATTT+GGG | 0.361076 | 5.3:-77686960 | None:intergenic |
| CAGCCAAATTTGGTATATAC+TGG | 0.372578 | 5.3:+77686820 | MS.gene38278:CDS |
| CTTTCTATGACAAACTTGTC+AGG | 0.398507 | 5.3:+77687277 | MS.gene38278:CDS |
| GTAGCACATTGCTATTTAGA+AGG | 0.402998 | 5.3:+77685188 | MS.gene38278:CDS |
| TGAAATGCTTCCAGATCTAC+TGG | 0.403251 | 5.3:-77685300 | None:intergenic |
| TCTTGTATTTAAGAACTCTA+AGG | 0.412316 | 5.3:+77686894 | MS.gene38278:CDS |
| AGAGTTCTTAAATACAAGAT+TGG | 0.418020 | 5.3:-77686890 | None:intergenic |
| TTGGCTGCTTGCATGCATAA+TGG | 0.422100 | 5.3:+77687108 | MS.gene38278:CDS |
| CAAAACAAGGCCTTGGATGA+AGG | 0.427193 | 5.3:-77687088 | None:intergenic |
| AATGAGACTTCAATTAGCTT+AGG | 0.435668 | 5.3:+77687036 | MS.gene38278:CDS |
| ATGCTGGATGGTTGCTCTGA+TGG | 0.442200 | 5.3:+77685473 | MS.gene38278:CDS |
| GGTGACCAACCCAGTAGATC+TGG | 0.445031 | 5.3:+77685290 | MS.gene38278:CDS |
| AACTCTAAGGTCCACAAAAT+GGG | 0.447471 | 5.3:+77686907 | MS.gene38278:CDS |
| CTATGTGCTTGTATCTGGAT+TGG | 0.464602 | 5.3:+77686656 | MS.gene38278:CDS |
| ATGACAAACTTGTCAGGGTA+TGG | 0.475765 | 5.3:+77687283 | MS.gene38278:CDS |
| GCTTAGGTGGAGGAGTTTGG+AGG | 0.486854 | 5.3:+77687052 | MS.gene38278:CDS |
| ACCTTCTTGTAGTGTGTAAG+TGG | 0.489791 | 5.3:-77685270 | None:intergenic |
| AAGCACGATTCCCTTGCATA+TGG | 0.490141 | 5.3:+77687186 | MS.gene38278:CDS |
| CTTAGGTGGAGGAGTTTGGA+GGG | 0.500724 | 5.3:+77687053 | MS.gene38278:CDS |
| AAGCAGCCAAAACAAGGCCT+TGG | 0.510827 | 5.3:-77687095 | None:intergenic |
| TTCACTCTTTAATATTGAAG+CGG | 0.521384 | 5.3:+77685319 | MS.gene38278:CDS |
| TATATACCAAATTTGGCTGA+TGG | 0.522943 | 5.3:-77686816 | None:intergenic |
| AAAACAAGGCCTTGGATGAA+GGG | 0.528136 | 5.3:-77687087 | None:intergenic |
| AGGCGACAAAGCTGAAGTGT+TGG | 0.538419 | 5.3:+77687152 | MS.gene38278:CDS |
| AAAGAGCAAGTAGCAACTAC+TGG | 0.540443 | 5.3:-77687258 | None:intergenic |
| GCCAGTCTGCTCCATATGCA+AGG | 0.541177 | 5.3:-77687197 | None:intergenic |
| ATAAAGTGGAATCCACCTGC+AGG | 0.543383 | 5.3:+77685395 | MS.gene38278:CDS |
| GAGACTTCAATTAGCTTAGG+TGG | 0.547687 | 5.3:+77687039 | MS.gene38278:CDS |
| TTTAATATTGAAGCGGACAC+AGG | 0.552003 | 5.3:+77685326 | MS.gene38278:CDS |
| TCATCCACATCCATCACAGT+AGG | 0.553375 | 5.3:+77686685 | MS.gene38278:CDS |
| AAAGGACTTATGTTCCCTGC+AGG | 0.554338 | 5.3:-77685410 | None:intergenic |
| GGACTTATGTTCCCTGCAGG+TGG | 0.557853 | 5.3:-77685407 | None:intergenic |
| TTCTTAAATACAAGATTGGA+AGG | 0.558501 | 5.3:-77686886 | None:intergenic |
| TTAGGTCAAGCAGATGCTGA+TGG | 0.559666 | 5.3:+77685434 | MS.gene38278:CDS |
| GGTTGCTCTGATGGAATACA+AGG | 0.562141 | 5.3:+77685482 | MS.gene38278:CDS |
| ATGATGAATACTTGAGGGTG+TGG | 0.565089 | 5.3:+77686986 | MS.gene38278:CDS |
| ATCAGAAAGCCCTACTGTGA+TGG | 0.567016 | 5.3:-77686695 | None:intergenic |
| TACAAGATAATATCATTACA+TGG | 0.572100 | 5.3:-77687309 | None:intergenic |
| ATACTTGAGAATTAAGATGC+TGG | 0.572344 | 5.3:+77685457 | MS.gene38278:CDS |
| TATGGAGCAGACTGGCAGAA+AGG | 0.573876 | 5.3:+77687204 | MS.gene38278:CDS |
| ACATTGTGGTGCCCATTATG+TGG | 0.577351 | 5.3:-77685236 | None:intergenic |
| ATCTGGAAATACAAGAAGAG+TGG | 0.579291 | 5.3:+77686752 | MS.gene38278:CDS |
| TTTCTATGACAAACTTGTCA+GGG | 0.580064 | 5.3:+77687278 | MS.gene38278:CDS |
| TGCTTCCAGATCTACTGGGT+TGG | 0.580660 | 5.3:-77685295 | None:intergenic |
| GCATGCAAGCAGCCAAAACA+AGG | 0.587727 | 5.3:-77687101 | None:intergenic |
| TTTATAGTGAGGAGACTAGT+GGG | 0.588794 | 5.3:+77685363 | MS.gene38278:CDS |
| AATAAGGTATTTGGGTCATG+AGG | 0.593807 | 5.3:-77686952 | None:intergenic |
| ACTTCAATTAGCTTAGGTGG+AGG | 0.594290 | 5.3:+77687042 | MS.gene38278:CDS |
| AAGCTATGATGAATACTTGA+GGG | 0.595787 | 5.3:+77686981 | MS.gene38278:CDS |
| AAGCCCTACTGTGATGGATG+TGG | 0.596404 | 5.3:-77686689 | None:intergenic |
| TGGCTGATGGATATCAAATG+AGG | 0.602475 | 5.3:-77686803 | None:intergenic |
| AAGCATCATCCCTTCATCCA+AGG | 0.604040 | 5.3:+77687078 | MS.gene38278:CDS |
| GGAAATACAAGAAGAGTGGA+AGG | 0.610010 | 5.3:+77686756 | MS.gene38278:CDS |
| TCCACTTACACACTACAAGA+AGG | 0.610467 | 5.3:+77685269 | MS.gene38278:CDS |
| GAGAAGTAAATCACATGGGA+GGG | 0.611106 | 5.3:+77687226 | MS.gene38278:CDS |
| GAAGCTATGATGAATACTTG+AGG | 0.614708 | 5.3:+77686980 | MS.gene38278:CDS |
| CCAGTCTGCTCCATATGCAA+GGG | 0.615600 | 5.3:-77687196 | None:intergenic |
| CATCCACATCCATCACAGTA+GGG | 0.616744 | 5.3:+77686686 | MS.gene38278:CDS |
| AGAAGGTAATGCAGATGCTG+TGG | 0.618373 | 5.3:+77685205 | MS.gene38278:CDS |
| ACTGTGATGGATGTGGATGA+AGG | 0.619011 | 5.3:-77686682 | None:intergenic |
| CCCTTGCATATGGAGCAGAC+TGG | 0.623412 | 5.3:+77687196 | MS.gene38278:CDS |
| GGAGAAGTAAATCACATGGG+AGG | 0.623635 | 5.3:+77687225 | MS.gene38278:CDS |
| ACAAACTTGTCAGGGTATGG+AGG | 0.625101 | 5.3:+77687286 | MS.gene38278:CDS |
| ATCACAGTAGGGCTTTCTGA+TGG | 0.627183 | 5.3:+77686697 | MS.gene38278:CDS |
| ACAACAAAACTTGCAATCGT+CGG | 0.634703 | 5.3:-77686845 | None:intergenic |
| GTTTATAGTGAGGAGACTAG+TGG | 0.636171 | 5.3:+77685362 | MS.gene38278:CDS |
| TTGAGAATTAAGATGCTGGA+TGG | 0.643048 | 5.3:+77685461 | MS.gene38278:CDS |
| TGATGAATACTTGAGGGTGT+GGG | 0.648470 | 5.3:+77686987 | MS.gene38278:CDS |
| TGGATACAGCTAAAACATTG+TGG | 0.659617 | 5.3:-77685250 | None:intergenic |
| TAAAGTGGAATCCACCTGCA+GGG | 0.661286 | 5.3:+77685396 | MS.gene38278:CDS |
| GCTTGACACAGTTTATAGTG+AGG | 0.668101 | 5.3:+77685352 | MS.gene38278:CDS |
| GAAAGGAGAAGTAAATCACA+TGG | 0.686537 | 5.3:+77687221 | MS.gene38278:CDS |
| GAAATGCTTCCAGATCTACT+GGG | 0.705745 | 5.3:-77685299 | None:intergenic |
| AAAGGAGAAGTAAATCACAT+GGG | 0.735171 | 5.3:+77687222 | MS.gene38278:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATACAATTAAAAATAAT+AGG | - | chr5.3:77686314-77686333 | None:intergenic | 10.0% |
| !! | AAGTCTAGAAATAAATTATA+CGG | + | chr5.3:77685584-77685603 | MS.gene38278:intron | 15.0% |
| !! | AATAAAAAACAAACTAGAAA+TGG | - | chr5.3:77686113-77686132 | None:intergenic | 15.0% |
| !!! | TTCTAGTTTGTTTTTTATTT+TGG | + | chr5.3:77686114-77686133 | MS.gene38278:intron | 15.0% |
| !!! | TTTTAATTGTATCAAAGATT+TGG | + | chr5.3:77686319-77686338 | MS.gene38278:intron | 15.0% |
| !! | AAACTCAATTATATAAGAGA+TGG | - | chr5.3:77686247-77686266 | None:intergenic | 20.0% |
| !! | AAGGTAGTTATAAATTTCAT+AGG | - | chr5.3:77686277-77686296 | None:intergenic | 20.0% |
| !! | AATTATATAAGAGATGGTAA+AGG | - | chr5.3:77686241-77686260 | None:intergenic | 20.0% |
| !! | ACTATAGCATTATAATAAAG+CGG | + | chr5.3:77685726-77685745 | MS.gene38278:intron | 20.0% |
| !! | AGGTAGTTATAAATTTCATA+GGG | - | chr5.3:77686276-77686295 | None:intergenic | 20.0% |
| !! | CTAAATTGTTATGAATTTGA+TGG | + | chr5.3:77686588-77686607 | MS.gene38278:intron | 20.0% |
| !! | GTTAAAAATATGTAAAAGTG+AGG | - | chr5.3:77685900-77685919 | None:intergenic | 20.0% |
| !! | TACAAGATAATATCATTACA+TGG | - | chr5.3:77687312-77687331 | None:intergenic | 20.0% |
| !! | TTTAGAAATGAAAGAATCAA+GGG | - | chr5.3:77685521-77685540 | None:intergenic | 20.0% |
| !!! | TTCTAAAACACTATTTTCAT+TGG | + | chr5.3:77685534-77685553 | MS.gene38278:intron | 20.0% |
| !!! | TTTTAGAAATGAAAGAATCA+AGG | - | chr5.3:77685522-77685541 | None:intergenic | 20.0% |
| ! | AAATATAGTATAGCTCTTCT+AGG | + | chr5.3:77686186-77686205 | MS.gene38278:intron | 25.0% |
| ! | AAATATGTAAAAGTGAGGTT+TGG | - | chr5.3:77685895-77685914 | None:intergenic | 25.0% |
| ! | AAGATTAACTGTAATGTAGA+AGG | - | chr5.3:77686452-77686471 | None:intergenic | 25.0% |
| ! | AATAAAATGTAACTCAGCAA+AGG | - | chr5.3:77686564-77686583 | None:intergenic | 25.0% |
| ! | AATATAGTATAGCTCTTCTA+GGG | + | chr5.3:77686187-77686206 | MS.gene38278:intron | 25.0% |
| ! | AGAGTTCTTAAATACAAGAT+TGG | - | chr5.3:77686893-77686912 | None:intergenic | 25.0% |
| ! | ATATATATCTTATAGCTAGC+TGG | + | chr5.3:77686360-77686379 | MS.gene38278:intron | 25.0% |
| ! | GGTAGTTATAAATTTCATAG+GGG | - | chr5.3:77686275-77686294 | None:intergenic | 25.0% |
| ! | GTAGTTATAAATTTCATAGG+GGG | - | chr5.3:77686274-77686293 | None:intergenic | 25.0% |
| ! | TACAAAGAAACATTAATACG+TGG | - | chr5.3:77686488-77686507 | None:intergenic | 25.0% |
| ! | TCTTGTATTTAAGAACTCTA+AGG | + | chr5.3:77686894-77686913 | MS.gene38278:CDS | 25.0% |
| ! | TTCACTCTTTAATATTGAAG+CGG | + | chr5.3:77685319-77685338 | MS.gene38278:CDS | 25.0% |
| ! | TTCTTAAATACAAGATTGGA+AGG | - | chr5.3:77686889-77686908 | None:intergenic | 25.0% |
| !! | ACTATTGAATTTACGTCTTT+TGG | - | chr5.3:77685840-77685859 | None:intergenic | 25.0% |
| !! | ATAACTACCTTCTAATTTGT+TGG | + | chr5.3:77686286-77686305 | MS.gene38278:intron | 25.0% |
| !! | TAGAAGGTTGTATTTTGTAA+TGG | - | chr5.3:77686436-77686455 | None:intergenic | 25.0% |
| !! | TTCCAGTTAATAAGGTATTT+GGG | - | chr5.3:77686963-77686982 | None:intergenic | 25.0% |
| !! | TTTGCAATTGTTGCTATTAA+AGG | + | chr5.3:77687132-77687151 | MS.gene38278:CDS | 25.0% |
| AAAGGAGAAGTAAATCACAT+GGG | + | chr5.3:77687222-77687241 | MS.gene38278:CDS | 30.0% | |
| AAGAAACATTAATACGTGGA+AGG | - | chr5.3:77686484-77686503 | None:intergenic | 30.0% | |
| AAGCTATGATGAATACTTGA+GGG | + | chr5.3:77686981-77687000 | MS.gene38278:CDS | 30.0% | |
| ATACTTGAGAATTAAGATGC+TGG | + | chr5.3:77685457-77685476 | MS.gene38278:CDS | 30.0% | |
| ATCATAGCTTCCAGTTAATA+AGG | - | chr5.3:77686971-77686990 | None:intergenic | 30.0% | |
| CTAATTGAAGTCTCATTAAC+AGG | - | chr5.3:77687033-77687052 | None:intergenic | 30.0% | |
| TATATACCAAATTTGGCTGA+TGG | - | chr5.3:77686819-77686838 | None:intergenic | 30.0% | |
| TCATATATCAGTGTCATGAT+GGG | - | chr5.3:77685936-77685955 | None:intergenic | 30.0% | |
| TTCCACTGCAAATTTATCAA+GGG | - | chr5.3:77685803-77685822 | None:intergenic | 30.0% | |
| TTTCCACTGCAAATTTATCA+AGG | - | chr5.3:77685804-77685823 | None:intergenic | 30.0% | |
| TTTCTATGACAAACTTGTCA+GGG | + | chr5.3:77687278-77687297 | MS.gene38278:CDS | 30.0% | |
| ! | AATGAGACTTCAATTAGCTT+AGG | + | chr5.3:77687036-77687055 | MS.gene38278:CDS | 30.0% |
| ! | AGGAATGCAATATTTTTCCA+TGG | - | chr5.3:77686544-77686563 | None:intergenic | 30.0% |
| ! | ATTGTTATGAATTTGATGGC+AGG | + | chr5.3:77686592-77686611 | MS.gene38278:intron | 30.0% |
| ! | CTTCCAGTTAATAAGGTATT+TGG | - | chr5.3:77686964-77686983 | None:intergenic | 30.0% |
| ! | TTGTTATGAATTTGATGGCA+GGG | + | chr5.3:77686593-77686612 | MS.gene38278:intron | 30.0% |
| !!! | TTTTTTTTTCCCCGATTTCT+TGG | + | chr5.3:77685988-77686007 | MS.gene38278:intron | 30.0% |
| AATTATACGGTACTTACCCT+CGG | + | chr5.3:77685597-77685616 | MS.gene38278:intron | 35.0% | |
| ACAACAAAACTTGCAATCGT+CGG | - | chr5.3:77686848-77686867 | None:intergenic | 35.0% | |
| ATAGGCACCAACAAATTAGA+AGG | - | chr5.3:77686296-77686315 | None:intergenic | 35.0% | |
| ATCTGGAAATACAAGAAGAG+TGG | + | chr5.3:77686752-77686771 | MS.gene38278:CDS | 35.0% | |
| ATGGCAAGAATGAATAACAG+AGG | + | chr5.3:77686040-77686059 | MS.gene38278:intron | 35.0% | |
| CAGCCAAATTTGGTATATAC+TGG | + | chr5.3:77686820-77686839 | MS.gene38278:CDS | 35.0% | |
| CTCATATATCAGTGTCATGA+TGG | - | chr5.3:77685937-77685956 | None:intergenic | 35.0% | |
| CTCTTCTTGTATTTCCAGAT+TGG | - | chr5.3:77686752-77686771 | None:intergenic | 35.0% | |
| CTTTCTATGACAAACTTGTC+AGG | + | chr5.3:77687277-77687296 | MS.gene38278:CDS | 35.0% | |
| GAAAGGAGAAGTAAATCACA+TGG | + | chr5.3:77687221-77687240 | MS.gene38278:CDS | 35.0% | |
| GAAGCTATGATGAATACTTG+AGG | + | chr5.3:77686980-77686999 | MS.gene38278:CDS | 35.0% | |
| GAATAACAGAGGAGTTTGAT+TGG | + | chr5.3:77686051-77686070 | MS.gene38278:intron | 35.0% | |
| GACCCAAATACCTTATTAAC+TGG | + | chr5.3:77686958-77686977 | MS.gene38278:CDS | 35.0% | |
| GAGCCAGTATATACCAAATT+TGG | - | chr5.3:77686826-77686845 | None:intergenic | 35.0% | |
| TAACTCTATGTGCTTGTATC+TGG | + | chr5.3:77686651-77686670 | MS.gene38278:CDS | 35.0% | |
| TACCCTTGATAAATTTGCAG+TGG | + | chr5.3:77685798-77685817 | MS.gene38278:intron | 35.0% | |
| TGATATCCATCAGCCAAATT+TGG | + | chr5.3:77686810-77686829 | MS.gene38278:CDS | 35.0% | |
| TGGATACAGCTAAAACATTG+TGG | - | chr5.3:77685253-77685272 | None:intergenic | 35.0% | |
| TTACAGATCGCAGAAAATAG+CGG | - | chr5.3:77685764-77685783 | None:intergenic | 35.0% | |
| TTCTCTTCATGAATCCAATC+TGG | + | chr5.3:77686735-77686754 | MS.gene38278:CDS | 35.0% | |
| TTGAGAATTAAGATGCTGGA+TGG | + | chr5.3:77685461-77685480 | MS.gene38278:CDS | 35.0% | |
| TTTAATATTGAAGCGGACAC+AGG | + | chr5.3:77685326-77685345 | MS.gene38278:CDS | 35.0% | |
| TTTATAGTGAGGAGACTAGT+GGG | + | chr5.3:77685363-77685382 | MS.gene38278:CDS | 35.0% | |
| ! | AATAAGGTATTTGGGTCATG+AGG | - | chr5.3:77686955-77686974 | None:intergenic | 35.0% |
| ! | AGGCACATGATTTTGAACTT+TGG | + | chr5.3:77686776-77686795 | MS.gene38278:CDS | 35.0% |
| ! | ATGGTTCAGTATGTGTTTTG+CGG | - | chr5.3:77686094-77686113 | None:intergenic | 35.0% |
| ! | ATTTTCCTTCCAAGAAATCG+GGG | - | chr5.3:77686000-77686019 | None:intergenic | 35.0% |
| ! | CATTTTCCTTCCAAGAAATC+GGG | - | chr5.3:77686001-77686020 | None:intergenic | 35.0% |
| ! | GCATTTTCCTTCCAAGAAAT+CGG | - | chr5.3:77686002-77686021 | None:intergenic | 35.0% |
| ! | GTGGGATTTTCGATATAAAG+TGG | + | chr5.3:77685381-77685400 | MS.gene38278:CDS | 35.0% |
| ! | TGCAATATTTTTCCATGGCA+AGG | - | chr5.3:77686539-77686558 | None:intergenic | 35.0% |
| ! | TGTTATGAATTTGATGGCAG+GGG | + | chr5.3:77686594-77686613 | MS.gene38278:intron | 35.0% |
| ! | TTGTTGATTAGCAGCTATTG+TGG | + | chr5.3:77685702-77685721 | MS.gene38278:intron | 35.0% |
| ! | TTTGGTTTCTCTACATGCAA+AGG | + | chr5.3:77686337-77686356 | MS.gene38278:intron | 35.0% |
| !! | AACTCTAAGGTCCACAAAAT+GGG | + | chr5.3:77686907-77686926 | MS.gene38278:CDS | 35.0% |
| !! | GTAGCACATTGCTATTTAGA+AGG | + | chr5.3:77685188-77685207 | MS.gene38278:CDS | 35.0% |
| !! | TGGAGTTTTGTCCACATAAT+GGG | + | chr5.3:77685225-77685244 | MS.gene38278:CDS | 35.0% |
| !!! | ACGATTGCAAGTTTTGTTGT+TGG | + | chr5.3:77686848-77686867 | MS.gene38278:CDS | 35.0% |
| !!! | AGTTTTGTTGTTGGGATTTG+CGG | + | chr5.3:77686857-77686876 | MS.gene38278:CDS | 35.0% |
| !!! | CGATTGCAAGTTTTGTTGTT+GGG | + | chr5.3:77686849-77686868 | MS.gene38278:CDS | 35.0% |
| !!! | GGGAACATAAGTCCTTTTTT+AGG | + | chr5.3:77685416-77685435 | MS.gene38278:CDS | 35.0% |
| AAAACAAGGCCTTGGATGAA+GGG | - | chr5.3:77687090-77687109 | None:intergenic | 40.0% | |
| AAAGAGCAAGTAGCAACTAC+TGG | - | chr5.3:77687261-77687280 | None:intergenic | 40.0% | |
| ACCTTCTTGTAGTGTGTAAG+TGG | - | chr5.3:77685273-77685292 | None:intergenic | 40.0% | |
| ATGACAAACTTGTCAGGGTA+TGG | + | chr5.3:77687283-77687302 | MS.gene38278:CDS | 40.0% | |
| ATGATGAATACTTGAGGGTG+TGG | + | chr5.3:77686986-77687005 | MS.gene38278:CDS | 40.0% | |
| CCGTTATTTGACAAAACCGA+GGG | - | chr5.3:77685616-77685635 | None:intergenic | 40.0% | |
| CTATGTGCTTGTATCTGGAT+TGG | + | chr5.3:77686656-77686675 | MS.gene38278:CDS | 40.0% | |
| CTCTGATGGAATACAAGGTA+TGG | + | chr5.3:77685487-77685506 | MS.gene38278:intron | 40.0% | |
| CTGAACATTACGAACAGTGA+TGG | + | chr5.3:77686021-77686040 | MS.gene38278:intron | 40.0% | |
| GAAATGCTTCCAGATCTACT+GGG | - | chr5.3:77685302-77685321 | None:intergenic | 40.0% | |
| GAGAAGTAAATCACATGGGA+GGG | + | chr5.3:77687226-77687245 | MS.gene38278:CDS | 40.0% | |
| GATAAAAGCAGTGACATGTG+CGG | + | chr5.3:77686508-77686527 | MS.gene38278:intron | 40.0% | |
| GCATCTGCTTGACCTAAAAA+AGG | - | chr5.3:77685431-77685450 | None:intergenic | 40.0% | |
| GCTTGACACAGTTTATAGTG+AGG | + | chr5.3:77685352-77685371 | MS.gene38278:CDS | 40.0% | |
| GGAAATACAAGAAGAGTGGA+AGG | + | chr5.3:77686756-77686775 | MS.gene38278:CDS | 40.0% | |
| GTTTATAGTGAGGAGACTAG+TGG | + | chr5.3:77685362-77685381 | MS.gene38278:CDS | 40.0% | |
| TCCACTTACACACTACAAGA+AGG | + | chr5.3:77685269-77685288 | MS.gene38278:CDS | 40.0% | |
| TGAAATGCTTCCAGATCTAC+TGG | - | chr5.3:77685303-77685322 | None:intergenic | 40.0% | |
| TGTCTGCAAGAATGCATACA+TGG | - | chr5.3:77686147-77686166 | None:intergenic | 40.0% | |
| ! | ACTTCAATTAGCTTAGGTGG+AGG | + | chr5.3:77687042-77687061 | MS.gene38278:CDS | 40.0% |
| ! | GAGACTTCAATTAGCTTAGG+TGG | + | chr5.3:77687039-77687058 | MS.gene38278:CDS | 40.0% |
| ! | TGATGAATACTTGAGGGTGT+GGG | + | chr5.3:77686987-77687006 | MS.gene38278:CDS | 40.0% |
| ! | TGCAAGTAACACCCATTTTG+TGG | - | chr5.3:77686921-77686940 | None:intergenic | 40.0% |
| ! | TGGCTGATGGATATCAAATG+AGG | - | chr5.3:77686806-77686825 | None:intergenic | 40.0% |
| ! | TGGTTCAGTATGTGTTTTGC+GGG | - | chr5.3:77686093-77686112 | None:intergenic | 40.0% |
| ! | TTTTTCCCCGATTTCTTGGA+AGG | + | chr5.3:77685992-77686011 | MS.gene38278:intron | 40.0% |
| !! | CCCTCGGTTTTGTCAAATAA+CGG | + | chr5.3:77685613-77685632 | MS.gene38278:intron | 40.0% |
| !! | GAACTCTAAGGTCCACAAAA+TGG | + | chr5.3:77686906-77686925 | MS.gene38278:CDS | 40.0% |
| !! | GTGGAGTTTTGTCCACATAA+TGG | + | chr5.3:77685224-77685243 | MS.gene38278:CDS | 40.0% |
| !!! | GTTTTGTTGTTGGGATTTGC+GGG | + | chr5.3:77686858-77686877 | MS.gene38278:CDS | 40.0% |
| AAAGGACTTATGTTCCCTGC+AGG | - | chr5.3:77685413-77685432 | None:intergenic | 45.0% | |
| AAGCACGATTCCCTTGCATA+TGG | + | chr5.3:77687186-77687205 | MS.gene38278:CDS | 45.0% | |
| AAGCATCATCCCTTCATCCA+AGG | + | chr5.3:77687078-77687097 | MS.gene38278:CDS | 45.0% | |
| ACAAACTTGTCAGGGTATGG+AGG | + | chr5.3:77687286-77687305 | MS.gene38278:CDS | 45.0% | |
| ACATTGTGGTGCCCATTATG+TGG | - | chr5.3:77685239-77685258 | None:intergenic | 45.0% | |
| AGAAGGTAATGCAGATGCTG+TGG | + | chr5.3:77685205-77685224 | MS.gene38278:CDS | 45.0% | |
| AGCTAGCTGGATATGCACTT+GGG | + | chr5.3:77686373-77686392 | MS.gene38278:intron | 45.0% | |
| ATAAAGTGGAATCCACCTGC+AGG | + | chr5.3:77685395-77685414 | MS.gene38278:CDS | 45.0% | |
| ATAACGGCGCTATAGCATAG+CGG | + | chr5.3:77685629-77685648 | MS.gene38278:intron | 45.0% | |
| ATCACAGTAGGGCTTTCTGA+TGG | + | chr5.3:77686697-77686716 | MS.gene38278:CDS | 45.0% | |
| ATCAGAAAGCCCTACTGTGA+TGG | - | chr5.3:77686698-77686717 | None:intergenic | 45.0% | |
| CAAAACAAGGCCTTGGATGA+AGG | - | chr5.3:77687091-77687110 | None:intergenic | 45.0% | |
| CATCCACATCCATCACAGTA+GGG | + | chr5.3:77686686-77686705 | MS.gene38278:CDS | 45.0% | |
| GCCGTTATTTGACAAAACCG+AGG | - | chr5.3:77685617-77685636 | None:intergenic | 45.0% | |
| GGAGAAGTAAATCACATGGG+AGG | + | chr5.3:77687225-77687244 | MS.gene38278:CDS | 45.0% | |
| GGCATTTCCTACTCTCACAA+CGG | - | chr5.3:77685874-77685893 | None:intergenic | 45.0% | |
| GGTTGCTCTGATGGAATACA+AGG | + | chr5.3:77685482-77685501 | MS.gene38278:CDS | 45.0% | |
| TAAAGTGGAATCCACCTGCA+GGG | + | chr5.3:77685396-77685415 | MS.gene38278:CDS | 45.0% | |
| TAGCTAGCTGGATATGCACT+TGG | + | chr5.3:77686372-77686391 | MS.gene38278:intron | 45.0% | |
| TCATCCACATCCATCACAGT+AGG | + | chr5.3:77686685-77686704 | MS.gene38278:CDS | 45.0% | |
| TTAGCTTAGGTGGAGGAGTT+TGG | + | chr5.3:77687049-77687068 | MS.gene38278:CDS | 45.0% | |
| TTAGGTCAAGCAGATGCTGA+TGG | + | chr5.3:77685434-77685453 | MS.gene38278:CDS | 45.0% | |
| TTGGCTGCTTGCATGCATAA+TGG | + | chr5.3:77687108-77687127 | MS.gene38278:CDS | 45.0% | |
| ! | ATGTGTTTTGCGGGAATCAC+AGG | - | chr5.3:77686084-77686103 | None:intergenic | 45.0% |
| !! | ACTGTGATGGATGTGGATGA+AGG | - | chr5.3:77686685-77686704 | None:intergenic | 45.0% |
| !! | CAGTGTCATGATGGGTTTCT+AGG | - | chr5.3:77685928-77685947 | None:intergenic | 45.0% |
| !!! | CTTCATCCAAGGCCTTGTTT+TGG | + | chr5.3:77687089-77687108 | MS.gene38278:CDS | 45.0% |
| !!! | TTACGTCTTTTGGAGCTCTG+TGG | - | chr5.3:77685830-77685849 | None:intergenic | 45.0% |
| AACTGCTCCGTTGTGAGAGT+AGG | + | chr5.3:77685864-77685883 | MS.gene38278:intron | 50.0% | |
| AAGCAGCCAAAACAAGGCCT+TGG | - | chr5.3:77687098-77687117 | None:intergenic | 50.0% | |
| AGGCGACAAAGCTGAAGTGT+TGG | + | chr5.3:77687152-77687171 | MS.gene38278:CDS | 50.0% | |
| ATGCTGGATGGTTGCTCTGA+TGG | + | chr5.3:77685473-77685492 | MS.gene38278:CDS | 50.0% | |
| CCAGTCTGCTCCATATGCAA+GGG | - | chr5.3:77687199-77687218 | None:intergenic | 50.0% | |
| CTTAGGTGGAGGAGTTTGGA+GGG | + | chr5.3:77687053-77687072 | MS.gene38278:CDS | 50.0% | |
| GCATGCAAGCAGCCAAAACA+AGG | - | chr5.3:77687104-77687123 | None:intergenic | 50.0% | |
| TATGGAGCAGACTGGCAGAA+AGG | + | chr5.3:77687204-77687223 | MS.gene38278:CDS | 50.0% | |
| TGCTTCCAGATCTACTGGGT+TGG | - | chr5.3:77685298-77685317 | None:intergenic | 50.0% | |
| ! | ACTTGGGCACTTTTCTCAGG+AGG | + | chr5.3:77686389-77686408 | MS.gene38278:intron | 50.0% |
| ! | GGCACTTTTCTCAGGAGGAT+TGG | + | chr5.3:77686394-77686413 | MS.gene38278:intron | 50.0% |
| ! | TGCACTTGGGCACTTTTCTC+AGG | + | chr5.3:77686386-77686405 | MS.gene38278:intron | 50.0% |
| !! | AAGCCCTACTGTGATGGATG+TGG | - | chr5.3:77686692-77686711 | None:intergenic | 50.0% |
| CCCTTGCATATGGAGCAGAC+TGG | + | chr5.3:77687196-77687215 | MS.gene38278:CDS | 55.0% | |
| GCCAGTCTGCTCCATATGCA+AGG | - | chr5.3:77687200-77687219 | None:intergenic | 55.0% | |
| GCTTAGGTGGAGGAGTTTGG+AGG | + | chr5.3:77687052-77687071 | MS.gene38278:CDS | 55.0% | |
| GGACTTATGTTCCCTGCAGG+TGG | - | chr5.3:77685410-77685429 | None:intergenic | 55.0% | |
| GGTGACCAACCCAGTAGATC+TGG | + | chr5.3:77685290-77685309 | MS.gene38278:CDS | 55.0% | |
| TGTGCGGATGTGCCTTGCCA+TGG | + | chr5.3:77686524-77686543 | MS.gene38278:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 77685182 | 77687332 | 77685182 | ID=MS.gene38278 |
| chr5.3 | mRNA | 77685182 | 77687332 | 77685182 | ID=MS.gene38278.t1;Parent=MS.gene38278 |
| chr5.3 | exon | 77685182 | 77685503 | 77685182 | ID=MS.gene38278.t1.exon1;Parent=MS.gene38278.t1 |
| chr5.3 | CDS | 77685182 | 77685503 | 77685182 | ID=cds.MS.gene38278.t1;Parent=MS.gene38278.t1 |
| chr5.3 | exon | 77686614 | 77687332 | 77686614 | ID=MS.gene38278.t1.exon2;Parent=MS.gene38278.t1 |
| chr5.3 | CDS | 77686614 | 77687332 | 77686614 | ID=cds.MS.gene38278.t1;Parent=MS.gene38278.t1 |
| Gene Sequence |
| Protein sequence |
