AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38563

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38563.t1 MTR_3g102220 94.526 475 21 2 1 471 1 474 0.0 888
MS.gene38563.t1 MTR_1g018840 70.860 477 130 4 1 471 1 474 0.0 680
MS.gene38563.t1 MTR_1g018840 71.749 446 117 4 1 440 1 443 0.0 640
MS.gene38563.t1 MTR_1g107550 65.668 434 140 4 26 456 26 453 0.0 573
MS.gene38563.t1 MTR_4g094918 65.169 356 104 4 14 365 9 348 8.42e-170 482
MS.gene38563.t1 MTR_3g112430 51.861 403 176 6 48 444 31 421 8.89e-135 396
MS.gene38563.t1 MTR_3g116080 50.986 355 162 5 8 360 5 349 4.16e-122 360
MS.gene38563.t1 MTR_3g075390 50.409 367 153 9 12 367 6 354 4.54e-119 353
MS.gene38563.t1 MTR_4g104370 50.556 360 164 8 17 371 6 356 2.20e-115 343
MS.gene38563.t1 MTR_2g016180 43.021 437 229 8 39 462 37 466 2.75e-115 348
MS.gene38563.t1 MTR_2g016270 42.563 437 216 9 39 462 37 451 2.30e-112 340
MS.gene38563.t1 MTR_4g080730 54.808 312 129 8 49 357 36 338 5.37e-112 334
MS.gene38563.t1 MTR_5g022560 52.351 319 137 7 46 357 32 342 8.97e-112 333
MS.gene38563.t1 MTR_4g079470 52.025 321 138 8 44 357 32 343 1.40e-111 333
MS.gene38563.t1 MTR_4g079770 52.025 321 138 8 44 357 32 343 2.07e-111 333
MS.gene38563.t1 MTR_4g080700 54.662 311 131 7 49 357 36 338 2.98e-111 332
MS.gene38563.t1 MTR_4g079440 47.175 354 172 6 10 358 1 344 9.76e-111 331
MS.gene38563.t1 MTR_4g047610 52.532 316 132 8 52 357 34 341 1.89e-110 330
MS.gene38563.t1 MTR_4g079800 51.402 321 140 8 44 357 32 343 1.84e-109 328
MS.gene38563.t1 MTR_4g107930 51.562 320 137 8 48 357 32 343 1.22e-108 326
MS.gene38563.t1 MTR_2g090890 51.282 312 142 4 49 359 35 337 3.99e-108 324
MS.gene38563.t1 MTR_2g075830 49.284 349 152 10 15 357 10 339 1.29e-103 313
MS.gene38563.t1 MTR_4g080360 45.810 358 168 8 8 358 3 341 1.66e-100 305
MS.gene38563.t1 MTR_2g083930 49.682 314 145 7 53 358 35 343 7.58e-99 301
MS.gene38563.t1 MTR_7g079230 43.889 360 173 10 1 357 1 334 2.29e-88 273
MS.gene38563.t1 MTR_7g078600 49.355 310 139 10 53 358 42 337 2.31e-88 273
MS.gene38563.t1 MTR_2g015850 49.667 300 136 10 65 358 73 363 2.27e-85 266
MS.gene38563.t1 MTR_4g065077 42.424 363 177 13 11 359 13 357 1.83e-79 251
MS.gene38563.t1 MTR_2g015920 38.503 374 208 13 5 366 3 366 4.48e-72 233
MS.gene38563.t1 MTR_8g086470 39.444 360 176 12 11 359 29 357 8.27e-69 224
MS.gene38563.t1 MTR_2g015930 38.420 367 198 14 8 359 6 359 7.00e-65 213
MS.gene38563.t1 MTR_4g071060 36.857 350 193 8 6 338 3 341 3.58e-64 212
MS.gene38563.t1 MTR_4g125300 42.517 294 150 10 72 358 67 348 5.28e-64 211
MS.gene38563.t1 MTR_2g067900 41.304 322 162 13 53 358 16 326 1.38e-63 209
MS.gene38563.t1 MTR_1g023210 39.796 294 155 7 62 338 57 345 2.22e-63 209
MS.gene38563.t1 MTR_2g067560 41.429 350 172 15 50 379 13 349 4.17e-60 212
MS.gene38563.t1 MTR_2g064475 37.249 349 164 15 50 356 13 348 7.57e-57 192
MS.gene38563.t1 MTR_1g023810 45.740 223 107 8 140 356 47 261 1.64e-53 181
MS.gene38563.t1 MTR_2g066980 37.538 325 142 14 53 357 34 317 2.78e-53 182
MS.gene38563.t1 MTR_1g094135 32.749 342 197 9 46 366 46 375 4.70e-51 177
MS.gene38563.t1 MTR_7g078630 39.796 294 127 9 32 313 690 945 2.20e-50 184
MS.gene38563.t1 MTR_4g072790 34.593 344 175 12 4 338 3 305 5.98e-49 171
MS.gene38563.t1 MTR_4g072340 34.483 348 176 11 3 338 2 309 1.38e-48 170
MS.gene38563.t1 MTR_4g073660 34.402 343 179 10 6 338 2 308 2.12e-48 169
MS.gene38563.t1 MTR_2g016380 39.381 226 119 5 239 448 9 232 1.09e-43 154
MS.gene38563.t1 MTR_7g078580 55.238 105 44 3 260 363 4 106 1.62e-31 117
MS.gene38563.t1 MTR_1g025450 41.379 174 80 5 140 310 53 207 4.24e-31 126
MS.gene38563.t1 MTR_7g079130 56.989 93 38 2 267 358 6 97 3.96e-28 107
MS.gene38563.t1 MTR_2g015840 39.259 135 77 3 45 177 25 156 1.97e-26 108
MS.gene38563.t1 MTR_2g015840 44.954 109 57 3 250 357 164 270 2.24e-26 108
MS.gene38563.t1 MTR_7g111060 27.358 318 187 13 67 350 23 330 4.61e-24 103
MS.gene38563.t1 MTR_3g029560 34.112 214 108 9 153 358 49 237 1.74e-20 90.9
MS.gene38563.t1 MTR_7g078310 40.559 143 74 6 95 234 113 247 2.07e-20 91.3
MS.gene38563.t1 MTR_7g111050 29.210 291 159 15 103 360 63 339 7.68e-20 91.3
MS.gene38563.t1 MTR_2g047960 48.750 80 41 0 150 229 6 85 4.41e-19 82.4
MS.gene38563.t1 MTR_8g087510 36.923 130 76 5 183 310 23 148 9.48e-17 78.2
MS.gene38563.t1 MTR_7g111050 29.032 248 136 13 103 319 58 296 3.27e-13 70.5
MS.gene38563.t1 MTR_7g079260 46.575 73 21 2 284 355 7 62 5.03e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38563.t1 AT1G47128 65.517 464 152 6 9 471 6 462 0.0 607
MS.gene38563.t1 AT5G43060 66.447 456 143 6 8 460 7 455 0.0 604
MS.gene38563.t1 AT3G19390 55.111 450 180 10 10 456 8 438 5.99e-173 494
MS.gene38563.t1 AT4G36880 62.029 345 124 4 27 364 23 367 2.38e-153 441
MS.gene38563.t1 AT1G09850 50.743 404 185 6 48 449 27 418 1.70e-141 413
MS.gene38563.t1 AT4G23520 54.261 352 147 7 10 359 11 350 2.83e-134 392
MS.gene38563.t1 AT3G19400 62.112 322 109 9 44 359 35 349 6.12e-134 391
MS.gene38563.t1 AT4G11310 53.911 358 155 6 5 359 3 353 5.82e-131 384
MS.gene38563.t1 AT4G11320 54.017 361 153 7 7 359 5 360 1.67e-130 382
MS.gene38563.t1 AT4G11320 54.017 361 153 7 7 359 5 360 1.67e-130 382
MS.gene38563.t1 AT3G48340 50.413 363 164 5 10 367 1 352 3.22e-122 361
MS.gene38563.t1 AT4G35350 50.286 350 165 4 10 359 13 353 6.48e-118 350
MS.gene38563.t1 AT1G20850 57.439 289 121 2 72 359 67 354 8.14e-117 347
MS.gene38563.t1 AT5G50260 53.517 327 139 6 45 365 30 349 9.44e-114 339
MS.gene38563.t1 AT3G48350 47.790 362 167 7 10 364 3 349 6.57e-110 330
MS.gene38563.t1 AT1G06260 47.324 355 168 6 6 359 7 343 2.66e-108 325
MS.gene38563.t1 AT5G45890 50.000 310 143 6 55 357 40 344 3.26e-104 315
MS.gene38563.t1 AT3G43960 52.083 336 147 12 42 370 30 358 2.57e-101 308
MS.gene38563.t1 AT3G19400 61.569 255 86 8 44 292 35 283 1.75e-97 295
MS.gene38563.t1 AT2G27420 43.132 364 175 11 8 358 3 347 1.28e-93 287
MS.gene38563.t1 AT3G49340 47.619 315 147 9 53 358 35 340 8.97e-93 285
MS.gene38563.t1 AT2G34080 42.210 353 178 8 13 358 11 344 8.63e-92 283
MS.gene38563.t1 AT4G35350 48.561 278 135 3 10 287 13 282 1.56e-85 265
MS.gene38563.t1 AT1G29080 39.718 355 191 10 12 358 6 345 3.35e-84 263
MS.gene38563.t1 AT1G29090 40.385 364 192 11 4 358 7 354 8.76e-83 259
MS.gene38563.t1 AT3G48350 44.637 289 140 5 10 292 3 277 1.73e-73 234
MS.gene38563.t1 AT1G29110 36.441 354 196 9 13 358 1 333 4.78e-71 229
MS.gene38563.t1 AT4G39090 38.870 301 159 7 53 336 51 343 4.24e-64 212
MS.gene38563.t1 AT3G45310 42.321 293 152 8 72 358 75 356 1.23e-63 210
MS.gene38563.t1 AT5G60360 42.230 296 148 11 72 358 75 356 1.39e-63 210
MS.gene38563.t1 AT3G45310 42.321 293 151 9 72 358 75 355 2.52e-61 204
MS.gene38563.t1 AT5G60360 41.554 296 149 11 72 358 75 355 3.25e-61 204
MS.gene38563.t1 AT5G60360 42.857 273 142 9 72 337 75 340 1.55e-60 202
MS.gene38563.t1 AT2G21430 34.012 344 199 8 10 336 8 340 5.00e-60 201
MS.gene38563.t1 AT4G16190 34.375 352 202 8 10 338 5 350 3.44e-56 191
MS.gene38563.t1 AT3G54940 33.129 326 196 7 31 338 26 347 3.13e-52 181
MS.gene38563.t1 AT3G54940 34.498 229 139 4 55 274 50 276 1.05e-37 139
MS.gene38563.t1 AT1G02305 28.070 285 167 13 94 350 59 333 2.09e-21 95.9
MS.gene38563.t1 AT4G01610 27.152 302 179 15 78 350 41 330 2.16e-19 89.7
MS.gene38563.t1 AT4G01610 26.490 302 181 15 78 350 41 330 1.33e-17 84.7
MS.gene38563.t1 AT1G02300 27.358 212 125 8 161 350 146 350 1.59e-14 75.5

Find 130 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAAATGGAGTTGATTAT+TGG 0.228751 3.1:-81193652 MS.gene38563:CDS
GGAGGAGATGGTCCAGGATT+TGG 0.245379 3.1:+81193491 None:intergenic
CTGGTCTTTGTCCTTCCAAT+TGG 0.250747 3.1:+81196338 None:intergenic
GAGGAGATGGTCCAGGATTT+GGG 0.260610 3.1:+81193492 None:intergenic
GCTAAACTGCACTGGCCTTT+TGG 0.274256 3.1:-81192993 MS.gene38563:CDS
ATTCCTCCAATCAACAGATT+TGG 0.278810 3.1:+81196277 None:intergenic
CCTTCCAATTGGGTCAATCT+TGG 0.302486 3.1:+81196349 None:intergenic
TTCCTCCAATCAACAGATTT+GGG 0.337168 3.1:+81196278 None:intergenic
GTTGGGTATGGAACAGAAAA+TGG 0.361875 3.1:-81193665 MS.gene38563:CDS
AGGTTGCGATGGCGGACTTA+TGG 0.367299 3.1:-81194582 MS.gene38563:CDS
TGGTCTTTGTCCTTCCAATT+GGG 0.369130 3.1:+81196339 None:intergenic
CAGAGTAAGGATAATCCATT+TGG 0.374697 3.1:-81193041 MS.gene38563:CDS
TGTTGTTGTGTACTTGGAAT+TGG 0.377882 3.1:-81193407 MS.gene38563:CDS
AATTGCCCAAATCTGTTGAT+TGG 0.381743 3.1:-81196283 MS.gene38563:CDS
GGTAAGAGCTGGGGAGAATC+AGG 0.382333 3.1:-81193611 MS.gene38563:CDS
TCCATTGCCTTCACTCCAAA+TGG 0.390378 3.1:+81193026 None:intergenic
TTTCAAGGCTAACTCATCAT+AGG 0.392211 3.1:+81194323 None:intergenic
ACTACTTGTTGTTGTGTACT+TGG 0.392980 3.1:-81193413 MS.gene38563:CDS
TGATGAGTTAGCCTTGAAAA+AGG 0.393101 3.1:-81194319 MS.gene38563:CDS
GACCATGGTGTTACCGTTGT+TGG 0.394945 3.1:-81193683 MS.gene38563:CDS
AACTTCCTTGGTCTTTGACT+TGG 0.395186 3.1:+81196240 None:intergenic
TTCACCAAGGGACCTGTCTC+AGG 0.395806 3.1:-81193286 MS.gene38563:CDS
AACTTACGGATACATATAAC+TGG 0.399300 3.1:+81194244 None:intergenic
GGCAATTTGTCACCAACGCT+TGG 0.406197 3.1:+81196299 None:intergenic
GGAACCAAGATTGACCCAAT+TGG 0.414918 3.1:-81196353 MS.gene38563:CDS
CCCACGCAGACAAATCTTCA+TGG 0.415518 3.1:-81196598 MS.gene38563:CDS
ATTGGATAGTAAGAAATTCA+TGG 0.423583 3.1:-81193634 MS.gene38563:CDS
ACCATGGTGTTACCGTTGTT+GGG 0.427319 3.1:-81193682 MS.gene38563:CDS
GCTTCAATGGCAACACTGAT+TGG 0.431683 3.1:+81194282 None:intergenic
AGAGTACCGGTCTAGGTACT+TGG 0.432842 3.1:-81196375 MS.gene38563:CDS
AAAGGCCAGTGCAGTTTAGC+TGG 0.435726 3.1:+81192996 None:intergenic
TCAACAATTGCTGCAGTTGA+AGG 0.436695 3.1:-81194683 MS.gene38563:CDS
CATACAAGGTTGGGTTGAAC+CGG 0.439030 3.1:-81196418 MS.gene38563:CDS
TTCACTATCAGAACAAGAAC+TGG 0.442677 3.1:-81194630 MS.gene38563:CDS
GGTGTTACCGTTGTTGGGTA+TGG 0.442710 3.1:-81193677 MS.gene38563:CDS
TTCAATTGATGACTACGAAC+AGG 0.444920 3.1:-81194352 MS.gene38563:CDS
CTTCTCAGCAACATTTGCCT+TGG 0.448842 3.1:-81196648 MS.gene38563:CDS
AGAACTTACCACAACTTCCT+TGG 0.449633 3.1:+81196228 None:intergenic
TTCCCTACCACCAGCTTCAA+TGG 0.456425 3.1:+81194269 None:intergenic
TCAACCCAACCTTGTATGTC+CGG 0.460815 3.1:+81196423 None:intergenic
TATCCCTATCGTGGCGTTGA+TGG 0.462446 3.1:-81194506 MS.gene38563:CDS
GAAATTCATGGGGTAAGAGC+TGG 0.471932 3.1:-81193622 MS.gene38563:CDS
CCCTTGGTGAATGTTGCAAA+TGG 0.474942 3.1:+81193298 None:intergenic
GTCTTCCTATCCCATAAAGA+AGG 0.476257 3.1:-81193525 MS.gene38563:CDS
TTGGATAGTAAGAAATTCAT+GGG 0.479691 3.1:-81193633 MS.gene38563:CDS
TTGGCCCTTCTTTATGGGAT+AGG 0.486791 3.1:+81193520 None:intergenic
CGTTGCTAAGATCAGCGAAC+CGG 0.498812 3.1:+81196399 None:intergenic
TTACCCTGAGACAGGTCCCT+TGG 0.501613 3.1:+81193282 None:intergenic
ATGGGGATGTTGTCCTCTTG+AGG 0.503559 3.1:-81193369 MS.gene38563:CDS
ATCAGTGTTGCCATTGAAGC+TGG 0.504683 3.1:-81194279 MS.gene38563:CDS
GGTATATTCACAGGAAAATG+TGG 0.504752 3.1:-81193716 MS.gene38563:CDS
ACGAGCACAATGCTGAAAAC+CGG 0.505973 3.1:-81196442 MS.gene38563:CDS
AAATTCATGGGGTAAGAGCT+GGG 0.510565 3.1:-81193621 MS.gene38563:CDS
AAAACCGGACATACAAGGTT+GGG 0.510867 3.1:-81196427 MS.gene38563:CDS
ATCTCATTCTGACCTCCAAA+AGG 0.511131 3.1:+81192978 None:intergenic
TGCCCAAATCTGTTGATTGG+AGG 0.511810 3.1:-81196280 MS.gene38563:CDS
CAACAATTGCTGCAGTTGAA+GGG 0.513307 3.1:-81194682 MS.gene38563:CDS
CAACATAGACGAAAGCGAAA+AGG 0.520153 3.1:-81196507 MS.gene38563:CDS
CAAACGGTTGGTGGGTTCAC+AGG 0.523709 3.1:+81193464 None:intergenic
AGAATCAGGCTATGTAAGAA+TGG 0.528174 3.1:-81193597 MS.gene38563:CDS
CCATGAAGATTTGTCTGCGT+GGG 0.529942 3.1:+81196598 None:intergenic
ACTGTGATATCTACTACAAA+CGG 0.532542 3.1:+81193448 None:intergenic
AATCTAGCAACAAGCGTGGC+AGG 0.532543 3.1:-81193569 MS.gene38563:CDS
TCTGTTGATTGGAGGAATCA+AGG 0.534268 3.1:-81196272 MS.gene38563:CDS
TATCTACTACAAACGGTTGG+TGG 0.536068 3.1:+81193455 None:intergenic
TTTACCATCAACGCCACGAT+AGG 0.536522 3.1:+81194502 None:intergenic
TGCTGAAAACCGGACATACA+AGG 0.539893 3.1:-81196432 MS.gene38563:CDS
TGTAGCATTTACCCTGAGAC+AGG 0.542876 3.1:+81193274 None:intergenic
GTTGGTGGGTTCACAGGTGA+AGG 0.544235 3.1:+81193470 None:intergenic
GGATAATCCATTTGGAGTGA+AGG 0.546745 3.1:-81193033 MS.gene38563:CDS
TTTAAATGAAGGGAGCTGCT+GGG 0.548412 3.1:-81194711 MS.gene38563:intron
TTTGAGTTCATTATAAACAA+TGG 0.552648 3.1:-81194551 MS.gene38563:CDS
ATCTTAGCAACGAAGAGTAC+CGG 0.553613 3.1:-81196388 MS.gene38563:CDS
TGGAGCATAACGATTGCTCC+TGG 0.557522 3.1:+81196319 None:intergenic
TGTGCTCGTCTATGAACTTG+AGG 0.559695 3.1:+81196456 None:intergenic
GCAACGAAGAGTACCGGTCT+AGG 0.560358 3.1:-81196382 MS.gene38563:CDS
GTCAAAGACCAAGGAAGTTG+TGG 0.561678 3.1:-81196236 MS.gene38563:intron
GGGATTAACAAGATAGTCAC+AGG 0.565200 3.1:-81194662 MS.gene38563:CDS
GAAAACCGGACATACAAGGT+TGG 0.567992 3.1:-81196428 MS.gene38563:CDS
GGTGAAGGAGGAGATGGTCC+AGG 0.571654 3.1:+81193485 None:intergenic
GTTAATGCAGGTTGCGATGG+CGG 0.572329 3.1:-81194590 MS.gene38563:CDS
CAGCAGACTGCAGCCTCAAG+AGG 0.572739 3.1:+81193356 None:intergenic
TTACCATCAACGCCACGATA+GGG 0.574845 3.1:+81194503 None:intergenic
AAGGCTAACTCATCATAGGC+AGG 0.575627 3.1:+81194327 None:intergenic
AATCGTTATGCTCCAAGCGT+TGG 0.579034 3.1:-81196311 MS.gene38563:CDS
ATCTACTACAAACGGTTGGT+GGG 0.580238 3.1:+81193456 None:intergenic
TGCCATTGAAGCTGGTGGTA+GGG 0.580570 3.1:-81194271 MS.gene38563:CDS
ACAGTTAATGCAGGTTGCGA+TGG 0.581307 3.1:-81194593 MS.gene38563:CDS
ACAAGCGTGGCAGGTAAATG+TGG 0.582854 3.1:-81193560 MS.gene38563:CDS
ATTGTTTATAATGAACTCAA+AGG 0.583026 3.1:+81194553 None:intergenic
GAACTCCAGCTAAACTGCAC+TGG 0.583723 3.1:-81193001 MS.gene38563:CDS
TTCACAGGTGAAGGAGGAGA+TGG 0.584350 3.1:+81193479 None:intergenic
CCTTGGTGAATGTTGCAAAT+GGG 0.585245 3.1:+81193299 None:intergenic
GAGGAGTGGCGCGTGAAGCA+CGG 0.586775 3.1:-81196545 MS.gene38563:CDS
GGTGGGTTCACAGGTGAAGG+AGG 0.590702 3.1:+81193473 None:intergenic
GAGTTCATTATAAACAATGG+TGG 0.593504 3.1:-81194548 MS.gene38563:CDS
TGGTAAATGTGATCAATACA+AGG 0.597847 3.1:-81194486 MS.gene38563:intron
TCCATTTGGAGTGAAGGCAA+TGG 0.600766 3.1:-81193027 MS.gene38563:CDS
AGGAGATGGTCCAGGATTTG+GGG 0.608482 3.1:+81193493 None:intergenic
GAGTACCGGTCTAGGTACTT+GGG 0.611103 3.1:-81196374 MS.gene38563:CDS
TTCTGTTCCATACCCAACAA+CGG 0.611724 3.1:+81193670 None:intergenic
CCATTTGCAACATTCACCAA+GGG 0.613478 3.1:-81193298 MS.gene38563:CDS
CCAAGATTGACCCAATTGGA+AGG 0.613736 3.1:-81196349 MS.gene38563:CDS
TGTGACAGAACAGTTAATGC+AGG 0.614081 3.1:-81194602 MS.gene38563:CDS
GCCATGAAGATTTGTCTGCG+TGG 0.614353 3.1:+81196597 None:intergenic
TTGCCATTGAAGCTGGTGGT+AGG 0.615387 3.1:-81194272 MS.gene38563:CDS
TGATATCTACTACAAACGGT+TGG 0.615529 3.1:+81193452 None:intergenic
CCCATTTGCAACATTCACCA+AGG 0.618869 3.1:-81193299 MS.gene38563:CDS
TGGTTCCCAAGTACCTAGAC+CGG 0.622633 3.1:+81196369 None:intergenic
GGAAATGATAGACATATCCA+AGG 0.622761 3.1:+81196631 None:intergenic
ACGATCAAGATAAATAACAT+TGG 0.630041 3.1:+81196680 None:intergenic
TCTTCCTATCCCATAAAGAA+GGG 0.630892 3.1:-81193524 MS.gene38563:CDS
TTCATGGCGTAGTGACAAAG+AGG 0.632333 3.1:-81196582 MS.gene38563:CDS
CAATTGGAAGGACAAAGACC+AGG 0.635684 3.1:-81196337 MS.gene38563:CDS
TCACCAAGGGACCTGTCTCA+GGG 0.637588 3.1:-81193285 MS.gene38563:intron
TAAAGACTATGTACGAGGAG+TGG 0.644931 3.1:-81196559 MS.gene38563:CDS
GTATATTCACAGGAAAATGT+GGG 0.649822 3.1:-81193715 MS.gene38563:CDS
TTGCAAATGGGATAGTCATG+AGG 0.655589 3.1:+81193311 None:intergenic
AATTCATGGGGTAAGAGCTG+GGG 0.658294 3.1:-81193620 MS.gene38563:CDS
ACCCAACAACGGTAACACCA+TGG 0.674055 3.1:+81193681 None:intergenic
GTGGTCCAAGTCAAAGACCA+AGG 0.674979 3.1:-81196245 MS.gene38563:CDS
TTGGAGGAATCAAGGTGCTG+TGG 0.684642 3.1:-81196264 MS.gene38563:CDS
TGGTGGTATTGACAGCGATG+AGG 0.693529 3.1:-81194531 MS.gene38563:CDS
GATGAGGATTATCCCTATCG+TGG 0.699238 3.1:-81194515 MS.gene38563:CDS
GGAGATGGTCCAGGATTTGG+GGG 0.699912 3.1:+81193494 None:intergenic
TGTGGGACAGCATTAGACCA+TGG 0.705102 3.1:-81193698 MS.gene38563:CDS
TGGATAGTAAGAAATTCATG+GGG 0.710961 3.1:-81193632 MS.gene38563:CDS
ACGTAATCTAGCAACAAGCG+TGG 0.711518 3.1:-81193573 MS.gene38563:CDS
AGTGTTGCCATTGAAGCTGG+TGG 0.717173 3.1:-81194276 MS.gene38563:CDS
AGAGGTAAAGACTATGTACG+AGG 0.762500 3.1:-81196564 MS.gene38563:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTATTTTTTTAACC+CGG + chr3.1:81194773-81194792 None:intergenic 10.0%
!!! TTTTTTCTTTTTTAAATGAA+GGG - chr3.1:81194948-81194967 MS.gene38563:intron 10.0%
!!! TTTTTTTCTTTTTTAAATGA+AGG - chr3.1:81194947-81194966 MS.gene38563:intron 10.0%
!! AAATTAAATGACTTATAATG+TGG + chr3.1:81194049-81194068 None:intergenic 15.0%
!! ATTATTAAACTTATAGTGTT+TGG + chr3.1:81194490-81194509 None:intergenic 15.0%
!! CCTTTCAAAAAAAAAAAAAA+CGG + chr3.1:81194441-81194460 None:intergenic 15.0%
!! TGAAAGATAATATAAAAAAG+TGG + chr3.1:81194352-81194371 None:intergenic 15.0%
!! TGAAAGATAATTTAAAAAAG+TGG + chr3.1:81194245-81194264 None:intergenic 15.0%
!!! AGTCAAATAATTTTTTTGAT+AGG + chr3.1:81195767-81195786 None:intergenic 15.0%
!!! TACTGATTAGATTAAATATA+AGG + chr3.1:81195571-81195590 None:intergenic 15.0%
!!! TACTTATTTGTTTTTAACAA+AGG - chr3.1:81194672-81194691 MS.gene38563:CDS 15.0%
!!! TATTTTTTACATTATGGTTA+AGG - chr3.1:81194574-81194593 MS.gene38563:CDS 15.0%
!! AAAAAAGAAAAAAAGAGTAG+AGG + chr3.1:81194941-81194960 None:intergenic 20.0%
!! AAGTTAGAATAAGAAACTTA+CGG + chr3.1:81195442-81195461 None:intergenic 20.0%
!! ACACGTAATAGATATAAATA+TGG + chr3.1:81194007-81194026 None:intergenic 20.0%
!! AGAAAACTATAAGCAATTAT+TGG + chr3.1:81195263-81195282 None:intergenic 20.0%
!! ATAGCTCATAAAATTAATGA+AGG - chr3.1:81194827-81194846 MS.gene38563:intron 20.0%
!! ATAGTGTTTGGAAAAATTAA+CGG + chr3.1:81194478-81194497 None:intergenic 20.0%
!! ATTGTTTATAATGAACTCAA+AGG + chr3.1:81195119-81195138 None:intergenic 20.0%
!! CCATAATGTAAAAAATACAA+CGG + chr3.1:81194571-81194590 None:intergenic 20.0%
!! TAAATATGCACTATTTGAAT+TGG - chr3.1:81196596-81196615 MS.gene38563:CDS 20.0%
!! TAGCTCATAAAATTAATGAA+GGG - chr3.1:81194828-81194847 MS.gene38563:intron 20.0%
!! TTCAATCAATCACATTAAAT+AGG - chr3.1:81194144-81194163 MS.gene38563:intron 20.0%
!!! AAATTTTGCAGCATATTATT+TGG - chr3.1:81196494-81196513 MS.gene38563:CDS 20.0%
!!! AATTTTGCAGCATATTATTT+GGG - chr3.1:81196495-81196514 MS.gene38563:CDS 20.0%
!!! AATTTTTGTAAATCACTCTA+TGG + chr3.1:81194212-81194231 None:intergenic 20.0%
!!! CCGTTTTTTTTTTTTTTGAA+AGG - chr3.1:81194438-81194457 MS.gene38563:intron 20.0%
!!! GATAATATTGTTTGCTAAAT+AGG - chr3.1:81194272-81194291 MS.gene38563:CDS 20.0%
!!! GATAGAATTTTATGTTTTCA+AGG - chr3.1:81193912-81193931 MS.gene38563:intron 20.0%
!!! GGTATTTTTAGAGATATTTT+AGG - chr3.1:81194165-81194184 MS.gene38563:intron 20.0%
!!! TATTTGTTTTTAACAAAGGT+TGG - chr3.1:81194676-81194695 MS.gene38563:CDS 20.0%
!!! TTACTATTGATTATCCAAAA+TGG + chr3.1:81194740-81194759 None:intergenic 20.0%
!!! TTCTTCAATTTTTGATTGTA+GGG - chr3.1:81193631-81193650 MS.gene38563:CDS 20.0%
!!! TTTAGAATAGTATCAACAAT+TGG + chr3.1:81193575-81193594 None:intergenic 20.0%
!!! TTTGAGTTCATTATAAACAA+TGG - chr3.1:81195118-81195137 MS.gene38563:intron 20.0%
!!! TTTTTTTACAATTGATCTAG+TGG - chr3.1:81193665-81193684 MS.gene38563:CDS 20.0%
! AATCAGTACATATGTGAATT+TGG - chr3.1:81195583-81195602 MS.gene38563:intron 25.0%
! AATGAGAACAAGTAATTGTA+GGG - chr3.1:81193759-81193778 MS.gene38563:intron 25.0%
! ACGATCAAGATAAATAACAT+TGG + chr3.1:81192992-81193011 None:intergenic 25.0%
! ATTGGATAGTAAGAAATTCA+TGG - chr3.1:81196035-81196054 MS.gene38563:intron 25.0%
! GTACTGTATGAATTATGATT+AGG + chr3.1:81195494-81195513 None:intergenic 25.0%
! GTTATTCACAAGAATTTACA+AGG - chr3.1:81195822-81195841 MS.gene38563:intron 25.0%
! GTTTCTTATTCTAACTTACT+CGG - chr3.1:81195445-81195464 MS.gene38563:intron 25.0%
! TATTCACCGAAAAAAAATGA+AGG + chr3.1:81194890-81194909 None:intergenic 25.0%
! TGATTAACAGCATAAGTATT+TGG - chr3.1:81195671-81195690 MS.gene38563:intron 25.0%
! TTCTCATTGTTACAATCTAA+TGG + chr3.1:81193747-81193766 None:intergenic 25.0%
! TTGGATAGTAAGAAATTCAT+GGG - chr3.1:81196036-81196055 MS.gene38563:intron 25.0%
!! AATAGTAATTGACATTTTCC+GGG - chr3.1:81194752-81194771 MS.gene38563:intron 25.0%
!! ATTTTATAATGCCAATAACC+TGG - chr3.1:81194862-81194881 MS.gene38563:intron 25.0%
!! ATTTTGCAGCATATTATTTG+GGG - chr3.1:81196496-81196515 MS.gene38563:CDS 25.0%
!! CAATAGTAATTGACATTTTC+CGG - chr3.1:81194751-81194770 MS.gene38563:intron 25.0%
!! TACTTATCACAATTTTTGCA+GGG - chr3.1:81195932-81195951 MS.gene38563:intron 25.0%
!!! AATTTTTGTAAAGCACTCTA+TGG + chr3.1:81194319-81194338 None:intergenic 25.0%
!!! CCGTTGTATTTTTTACATTA+TGG - chr3.1:81194568-81194587 MS.gene38563:CDS 25.0%
!!! GCATTAAGTTGATTATATTG+AGG - chr3.1:81193791-81193810 MS.gene38563:intron 25.0%
!!! GTTCTTCAATTTTTGATTGT+AGG - chr3.1:81193630-81193649 MS.gene38563:CDS 25.0%
!!! TGACACTTTTGTTAGTTTAA+AGG + chr3.1:81196463-81196482 None:intergenic 25.0%
!!! TTTTTTTTTTTTTGTGCGTG+TGG - chr3.1:81193498-81193517 MS.gene38563:CDS 25.0%
AAAAATCTACCATCAAATGC+TGG + chr3.1:81193843-81193862 None:intergenic 30.0%
AACAGCATAAGTATTTGGTA+AGG - chr3.1:81195676-81195695 MS.gene38563:intron 30.0%
AACTTACGGATACATATAAC+TGG + chr3.1:81195428-81195447 None:intergenic 30.0%
AATGCTGGAATTATTCACTT+AGG + chr3.1:81193828-81193847 None:intergenic 30.0%
ACACATATATATGACACACT+TGG - chr3.1:81196421-81196440 MS.gene38563:CDS 30.0%
ACAGCATAAGTATTTGGTAA+GGG - chr3.1:81195677-81195696 MS.gene38563:intron 30.0%
ACTGTGATATCTACTACAAA+CGG + chr3.1:81196224-81196243 None:intergenic 30.0%
ACTTACAGTTGAAAGAGATT+AGG + chr3.1:81195609-81195628 None:intergenic 30.0%
ATGCAAAGTTAAGTCTTCAA+TGG + chr3.1:81196566-81196585 None:intergenic 30.0%
CAATGAGAACAAGTAATTGT+AGG - chr3.1:81193758-81193777 MS.gene38563:intron 30.0%
GAGTTCATTATAAACAATGG+TGG - chr3.1:81195121-81195140 MS.gene38563:intron 30.0%
GTATATTCACAGGAAAATGT+GGG - chr3.1:81195954-81195973 MS.gene38563:intron 30.0%
TACTCTAACAAAGTGAATGA+GGG + chr3.1:81193547-81193566 None:intergenic 30.0%
TCATTTCTGCACATTCTTAT+TGG - chr3.1:81195644-81195663 MS.gene38563:intron 30.0%
TGAATAATTCCAGCATTTGA+TGG - chr3.1:81193831-81193850 MS.gene38563:intron 30.0%
TGCAAAGTTAAGTCTTCAAT+GGG + chr3.1:81196565-81196584 None:intergenic 30.0%
TGGATAGTAAGAAATTCATG+GGG - chr3.1:81196037-81196056 MS.gene38563:intron 30.0%
TGGTAAATGTGATCAATACA+AGG - chr3.1:81195183-81195202 MS.gene38563:intron 30.0%
TTACTCTAACAAAGTGAATG+AGG + chr3.1:81193548-81193567 None:intergenic 30.0%
! CAGAAAATGGAGTTGATTAT+TGG - chr3.1:81196017-81196036 MS.gene38563:intron 30.0%
! CTACTTATCACAATTTTTGC+AGG - chr3.1:81195931-81195950 MS.gene38563:intron 30.0%
! CTATTGATTATCCAAAATGG+TGG + chr3.1:81194737-81194756 None:intergenic 30.0%
!! TGGAAAACTTTGCTTTTCAT+GGG - chr3.1:81196282-81196301 MS.gene38563:CDS 30.0%
!! TTGGAAAACTTTGCTTTTCA+TGG - chr3.1:81196281-81196300 MS.gene38563:CDS 30.0%
!!! CTGGTTCCTTCATTTTTTTT+CGG - chr3.1:81194881-81194900 MS.gene38563:intron 30.0%
!!! GAATTGCTTTCTTTGTTTTC+TGG - chr3.1:81195897-81195916 MS.gene38563:intron 30.0%
!!! TAGGAGCTTTTATTTTACTC+CGG + chr3.1:81195475-81195494 None:intergenic 30.0%
!!! TTTCTTTGTTTTCTGGCTTT+AGG - chr3.1:81195904-81195923 MS.gene38563:intron 30.0%
AAATGAAGGAACCAGGTTAT+TGG + chr3.1:81194876-81194895 None:intergenic 35.0%
AATTGCCCAAATCTGTTGAT+TGG - chr3.1:81193386-81193405 MS.gene38563:CDS 35.0%
AGAATCAGGCTATGTAAGAA+TGG - chr3.1:81196072-81196091 MS.gene38563:intron 35.0%
AGTAATTGTAGGGACTAAAG+TGG - chr3.1:81193769-81193788 MS.gene38563:intron 35.0%
ATATGACACACTTGGCATTA+TGG - chr3.1:81196429-81196448 MS.gene38563:CDS 35.0%
ATTCATACAGTACGAGTAGA+AGG - chr3.1:81195501-81195520 MS.gene38563:intron 35.0%
ATTCCTCCAATCAACAGATT+TGG + chr3.1:81193395-81193414 None:intergenic 35.0%
CAGAGTAAGGATAATCCATT+TGG - chr3.1:81196628-81196647 MS.gene38563:CDS 35.0%
CGAAAAAAAATGAAGGAACC+AGG + chr3.1:81194883-81194902 None:intergenic 35.0%
CTAGCAAATGTACTTTCAGA+AGG + chr3.1:81195848-81195867 None:intergenic 35.0%
GGAAATGATAGACATATCCA+AGG + chr3.1:81193041-81193060 None:intergenic 35.0%
GGTATATTCACAGGAAAATG+TGG - chr3.1:81195953-81195972 MS.gene38563:intron 35.0%
TCTTCCTATCCCATAAAGAA+GGG - chr3.1:81196145-81196164 MS.gene38563:intron 35.0%
TGAAATCTCGAATTCGAACT+CGG + chr3.1:81193701-81193720 None:intergenic 35.0%
TGACTTATAATGTGGCAATG+TGG + chr3.1:81194041-81194060 None:intergenic 35.0%
TGATATCTACTACAAACGGT+TGG + chr3.1:81196220-81196239 None:intergenic 35.0%
TGTTGTTGTGTACTTGGAAT+TGG - chr3.1:81196262-81196281 MS.gene38563:CDS 35.0%
TTCACTATCAGAACAAGAAC+TGG - chr3.1:81195039-81195058 MS.gene38563:intron 35.0%
TTCATACAGTACGAGTAGAA+GGG - chr3.1:81195502-81195521 MS.gene38563:intron 35.0%
TTCCTCCAATCAACAGATTT+GGG + chr3.1:81193394-81193413 None:intergenic 35.0%
TTGGTTTATCTTGCAGAGTA+AGG - chr3.1:81196615-81196634 MS.gene38563:CDS 35.0%
TTTCAAGGCTAACTCATCAT+AGG + chr3.1:81195349-81195368 None:intergenic 35.0%
! TTAACAAAGGTTGGTTGAGT+TGG - chr3.1:81194685-81194704 MS.gene38563:CDS 35.0%
! TTCAATTGATGACTACGAAC+AGG - chr3.1:81195317-81195336 MS.gene38563:intron 35.0%
! TTTGATTGTAGGGACTCTTT+TGG - chr3.1:81193641-81193660 MS.gene38563:CDS 35.0%
! TTTTTGCAGGGTATATTCAC+AGG - chr3.1:81195944-81195963 MS.gene38563:intron 35.0%
!! ACTACTTGTTGTTGTGTACT+TGG - chr3.1:81196256-81196275 MS.gene38563:CDS 35.0%
!! ATTAGCTACAGCCTTTTTCA+AGG + chr3.1:81195364-81195383 None:intergenic 35.0%
!! GGAAAACTTTGCTTTTCATG+GGG - chr3.1:81196283-81196302 MS.gene38563:CDS 35.0%
!! TGATGAGTTAGCCTTGAAAA+AGG - chr3.1:81195350-81195369 MS.gene38563:intron 35.0%
AAAACCGGACATACAAGGTT+GGG - chr3.1:81193242-81193261 MS.gene38563:intron 40.0%
AAATTCATGGGGTAAGAGCT+GGG - chr3.1:81196048-81196067 MS.gene38563:intron 40.0%
AGAACTTACCACAACTTCCT+TGG + chr3.1:81193444-81193463 None:intergenic 40.0%
AGAGGTAAAGACTATGTACG+AGG - chr3.1:81193105-81193124 MS.gene38563:intron 40.0%
ATCTACTACAAACGGTTGGT+GGG + chr3.1:81196216-81196235 None:intergenic 40.0%
ATCTCATTCTGACCTCCAAA+AGG + chr3.1:81196694-81196713 None:intergenic 40.0%
CAACAATTGCTGCAGTTGAA+GGG - chr3.1:81194987-81195006 MS.gene38563:intron 40.0%
CAACATAGACGAAAGCGAAA+AGG - chr3.1:81193162-81193181 MS.gene38563:intron 40.0%
CCATTTGCAACATTCACCAA+GGG - chr3.1:81196371-81196390 MS.gene38563:CDS 40.0%
CCTAAGAAGTTAGAAGTCAG+AGG - chr3.1:81195703-81195722 MS.gene38563:intron 40.0%
CCTCTGACTTCTAACTTCTT+AGG + chr3.1:81195706-81195725 None:intergenic 40.0%
CCTTGGTGAATGTTGCAAAT+GGG + chr3.1:81196373-81196392 None:intergenic 40.0%
CTTATAATGTGGCAATGTGG+TGG + chr3.1:81194038-81194057 None:intergenic 40.0%
GAAATCTCGAATTCGAACTC+GGG + chr3.1:81193700-81193719 None:intergenic 40.0%
GGCTAGAGTTAGTAAGTTAG+TGG + chr3.1:81195746-81195765 None:intergenic 40.0%
GGGATTAACAAGATAGTCAC+AGG - chr3.1:81195007-81195026 MS.gene38563:intron 40.0%
GTCTTCCTATCCCATAAAGA+AGG - chr3.1:81196144-81196163 MS.gene38563:intron 40.0%
GTTGGGTATGGAACAGAAAA+TGG - chr3.1:81196004-81196023 MS.gene38563:intron 40.0%
TAAAGACTATGTACGAGGAG+TGG - chr3.1:81193110-81193129 MS.gene38563:intron 40.0%
TATCTACTACAAACGGTTGG+TGG + chr3.1:81196217-81196236 None:intergenic 40.0%
TCAACAATTGCTGCAGTTGA+AGG - chr3.1:81194986-81195005 MS.gene38563:intron 40.0%
TGGTCTTTGTCCTTCCAATT+GGG + chr3.1:81193333-81193352 None:intergenic 40.0%
TGTGACAGAACAGTTAATGC+AGG - chr3.1:81195067-81195086 MS.gene38563:intron 40.0%
TTCTGTTCCATACCCAACAA+CGG + chr3.1:81196002-81196021 None:intergenic 40.0%
TTGCAAATGGGATAGTCATG+AGG + chr3.1:81196361-81196380 None:intergenic 40.0%
TTTAAATGAAGGGAGCTGCT+GGG - chr3.1:81194958-81194977 MS.gene38563:intron 40.0%
! AACTTCCTTGGTCTTTGACT+TGG + chr3.1:81193432-81193451 None:intergenic 40.0%
! ATCTTAGCAACGAAGAGTAC+CGG - chr3.1:81193281-81193300 MS.gene38563:intron 40.0%
! ATTTTCCCTGTCAGTTGAGT+TGG + chr3.1:81194646-81194665 None:intergenic 40.0%
! GGATAATCCATTTGGAGTGA+AGG - chr3.1:81196636-81196655 MS.gene38563:CDS 40.0%
! TCTGTTGATTGGAGGAATCA+AGG - chr3.1:81193397-81193416 MS.gene38563:CDS 40.0%
! TTTTAAATGAAGGGAGCTGC+TGG - chr3.1:81194957-81194976 MS.gene38563:intron 40.0%
!! GGATTTTGGCCCTTCTTTAT+GGG + chr3.1:81196157-81196176 None:intergenic 40.0%
AAGGCTAACTCATCATAGGC+AGG + chr3.1:81195345-81195364 None:intergenic 45.0%
AATCGTTATGCTCCAAGCGT+TGG - chr3.1:81193358-81193377 MS.gene38563:CDS 45.0%
AATTCATGGGGTAAGAGCTG+GGG - chr3.1:81196049-81196068 MS.gene38563:intron 45.0%
ACAGTTAATGCAGGTTGCGA+TGG - chr3.1:81195076-81195095 MS.gene38563:intron 45.0%
ACGAGCACAATGCTGAAAAC+CGG - chr3.1:81193227-81193246 MS.gene38563:intron 45.0%
ACGTAATCTAGCAACAAGCG+TGG - chr3.1:81196096-81196115 MS.gene38563:intron 45.0%
ATAATGTGGCAATGTGGTGG+AGG + chr3.1:81194035-81194054 None:intergenic 45.0%
ATCAGTGTTGCCATTGAAGC+TGG - chr3.1:81195390-81195409 MS.gene38563:intron 45.0%
CAATTGGAAGGACAAAGACC+AGG - chr3.1:81193332-81193351 MS.gene38563:CDS 45.0%
CCAAGATTGACCCAATTGGA+AGG - chr3.1:81193320-81193339 MS.gene38563:CDS 45.0%
CCATGAAGATTTGTCTGCGT+GGG + chr3.1:81193074-81193093 None:intergenic 45.0%
CCCATTTGCAACATTCACCA+AGG - chr3.1:81196370-81196389 MS.gene38563:CDS 45.0%
CCCTTGGTGAATGTTGCAAA+TGG + chr3.1:81196374-81196393 None:intergenic 45.0%
CCTTCCAATTGGGTCAATCT+TGG + chr3.1:81193323-81193342 None:intergenic 45.0%
CTTCTCAGCAACATTTGCCT+TGG - chr3.1:81193021-81193040 MS.gene38563:CDS 45.0%
GAAAACCGGACATACAAGGT+TGG - chr3.1:81193241-81193260 MS.gene38563:intron 45.0%
GAAATTCATGGGGTAAGAGC+TGG - chr3.1:81196047-81196066 MS.gene38563:intron 45.0%
GATGAGGATTATCCCTATCG+TGG - chr3.1:81195154-81195173 MS.gene38563:intron 45.0%
GCTTCAATGGCAACACTGAT+TGG + chr3.1:81195390-81195409 None:intergenic 45.0%
GGAACCAAGATTGACCCAAT+TGG - chr3.1:81193316-81193335 MS.gene38563:CDS 45.0%
GTCAAAGACCAAGGAAGTTG+TGG - chr3.1:81193433-81193452 MS.gene38563:CDS 45.0%
TACCACCAACTCAACTGACA+GGG - chr3.1:81194638-81194657 MS.gene38563:CDS 45.0%
TCAACCCAACCTTGTATGTC+CGG + chr3.1:81193249-81193268 None:intergenic 45.0%
TCCATTGCCTTCACTCCAAA+TGG + chr3.1:81196646-81196665 None:intergenic 45.0%
TGCTGAAAACCGGACATACA+AGG - chr3.1:81193237-81193256 MS.gene38563:intron 45.0%
TGTAGCATTTACCCTGAGAC+AGG + chr3.1:81196398-81196417 None:intergenic 45.0%
TGTGCTCGTCTATGAACTTG+AGG + chr3.1:81193216-81193235 None:intergenic 45.0%
TTACCATCAACGCCACGATA+GGG + chr3.1:81195169-81195188 None:intergenic 45.0%
TTAGTGGTTACGCTGAATCG+TGG + chr3.1:81195730-81195749 None:intergenic 45.0%
TTCATGGCGTAGTGACAAAG+AGG - chr3.1:81193087-81193106 MS.gene38563:intron 45.0%
TTGGCCCTTCTTTATGGGAT+AGG + chr3.1:81196152-81196171 None:intergenic 45.0%
TTTACCATCAACGCCACGAT+AGG + chr3.1:81195170-81195189 None:intergenic 45.0%
! CTGGTCTTTGTCCTTCCAAT+TGG + chr3.1:81193334-81193353 None:intergenic 45.0%
! TCCATTTGGAGTGAAGGCAA+TGG - chr3.1:81196642-81196661 MS.gene38563:CDS 45.0%
! TGCCCAAATCTGTTGATTGG+AGG - chr3.1:81193389-81193408 MS.gene38563:CDS 45.0%
!! AAAGGTTGGTTGAGTTGGTG+AGG - chr3.1:81194690-81194709 MS.gene38563:CDS 45.0%
!! ACCATGGTGTTACCGTTGTT+GGG - chr3.1:81195987-81196006 MS.gene38563:intron 45.0%
!! CATACAAGGTTGGGTTGAAC+CGG - chr3.1:81193251-81193270 MS.gene38563:intron 45.0%
!! GGGATTTTGGCCCTTCTTTA+TGG + chr3.1:81196158-81196177 None:intergenic 45.0%
!!! ACATTTTTAAAATTTTAAAT+AGG - chr3.1:81194792-81194811 MS.gene38563:intron 5.0%
AAAGGCCAGTGCAGTTTAGC+TGG + chr3.1:81196676-81196695 None:intergenic 50.0%
AATCTAGCAACAAGCGTGGC+AGG - chr3.1:81196100-81196119 MS.gene38563:intron 50.0%
ACAAGCGTGGCAGGTAAATG+TGG - chr3.1:81196109-81196128 MS.gene38563:intron 50.0%
ACCCAACAACGGTAACACCA+TGG + chr3.1:81195991-81196010 None:intergenic 50.0%
AGGAGATGGTCCAGGATTTG+GGG + chr3.1:81196179-81196198 None:intergenic 50.0%
AGTGTTGCCATTGAAGCTGG+TGG - chr3.1:81195393-81195412 MS.gene38563:intron 50.0%
ATGGGGATGTTGTCCTCTTG+AGG - chr3.1:81196300-81196319 MS.gene38563:CDS 50.0%
CAAAATGGTGGTCTTCTCGC+TGG + chr3.1:81194725-81194744 None:intergenic 50.0%
CCCACGCAGACAAATCTTCA+TGG - chr3.1:81193071-81193090 MS.gene38563:intron 50.0%
CGTTGCTAAGATCAGCGAAC+CGG + chr3.1:81193273-81193292 None:intergenic 50.0%
GAACTCCAGCTAAACTGCAC+TGG - chr3.1:81196668-81196687 MS.gene38563:CDS 50.0%
GAGGAGATGGTCCAGGATTT+GGG + chr3.1:81196180-81196199 None:intergenic 50.0%
GCCATGAAGATTTGTCTGCG+TGG + chr3.1:81193075-81193094 None:intergenic 50.0%
GGCAATTTGTCACCAACGCT+TGG + chr3.1:81193373-81193392 None:intergenic 50.0%
GTACCACCAACTCAACTGAC+AGG - chr3.1:81194637-81194656 MS.gene38563:CDS 50.0%
GTGGTCCAAGTCAAAGACCA+AGG - chr3.1:81193424-81193443 MS.gene38563:CDS 50.0%
GTTAATGCAGGTTGCGATGG+CGG - chr3.1:81195079-81195098 MS.gene38563:intron 50.0%
TGCCATTGAAGCTGGTGGTA+GGG - chr3.1:81195398-81195417 MS.gene38563:intron 50.0%
TGGAGCATAACGATTGCTCC+TGG + chr3.1:81193353-81193372 None:intergenic 50.0%
TGGTTCCCAAGTACCTAGAC+CGG + chr3.1:81193303-81193322 None:intergenic 50.0%
TGTGGGACAGCATTAGACCA+TGG - chr3.1:81195971-81195990 MS.gene38563:intron 50.0%
TTCACAGGTGAAGGAGGAGA+TGG + chr3.1:81196193-81196212 None:intergenic 50.0%
TTCCCTACCACCAGCTTCAA+TGG + chr3.1:81195403-81195422 None:intergenic 50.0%
TTGCCATTGAAGCTGGTGGT+AGG - chr3.1:81195397-81195416 MS.gene38563:intron 50.0%
! CAGCGAGAAGACCACCATTT+TGG - chr3.1:81194723-81194742 MS.gene38563:intron 50.0%
! GGTGTTACCGTTGTTGGGTA+TGG - chr3.1:81195992-81196011 MS.gene38563:intron 50.0%
! GTCCAGGATTTGGGGGATTT+TGG + chr3.1:81196171-81196190 None:intergenic 50.0%
! TATCCCTATCGTGGCGTTGA+TGG - chr3.1:81195163-81195182 MS.gene38563:intron 50.0%
! TTCTAACTTACTCGGCTCGC+CGG - chr3.1:81195453-81195472 MS.gene38563:intron 50.0%
!! AGAGTACCGGTCTAGGTACT+TGG - chr3.1:81193294-81193313 MS.gene38563:CDS 50.0%
!! GACCATGGTGTTACCGTTGT+TGG - chr3.1:81195986-81196005 MS.gene38563:intron 50.0%
!! GAGTACCGGTCTAGGTACTT+GGG - chr3.1:81193295-81193314 MS.gene38563:CDS 50.0%
!! GTCTGCGTGGGTTTTGTCAT+AGG + chr3.1:81193062-81193081 None:intergenic 50.0%
!! TGGTGGTATTGACAGCGATG+AGG - chr3.1:81195138-81195157 MS.gene38563:intron 50.0%
!! TTCCCTGTCAGTTGAGTTGG+TGG + chr3.1:81194643-81194662 None:intergenic 50.0%
!! TTGGAGGAATCAAGGTGCTG+TGG - chr3.1:81193405-81193424 MS.gene38563:CDS 50.0%
!!! AAACTGCACTGGCCTTTTGG+AGG - chr3.1:81196679-81196698 MS.gene38563:CDS 50.0%
!!! GCTAAACTGCACTGGCCTTT+TGG - chr3.1:81196676-81196695 MS.gene38563:CDS 50.0%
GGAGATGGTCCAGGATTTGG+GGG + chr3.1:81196178-81196197 None:intergenic 55.0%
GGAGGAGATGGTCCAGGATT+TGG + chr3.1:81196181-81196200 None:intergenic 55.0%
GGCCAAAATCCCCCAAATCC+TGG - chr3.1:81196166-81196185 MS.gene38563:intron 55.0%
GGTAAGAGCTGGGGAGAATC+AGG - chr3.1:81196058-81196077 MS.gene38563:intron 55.0%
TCACCAAGGGACCTGTCTCA+GGG - chr3.1:81196384-81196403 MS.gene38563:CDS 55.0%
TTACCCTGAGACAGGTCCCT+TGG + chr3.1:81196390-81196409 None:intergenic 55.0%
TTCACCAAGGGACCTGTCTC+AGG - chr3.1:81196383-81196402 MS.gene38563:CDS 55.0%
!! AGGTTGCGATGGCGGACTTA+TGG - chr3.1:81195087-81195106 MS.gene38563:intron 55.0%
!! CAAACGGTTGGTGGGTTCAC+AGG + chr3.1:81196208-81196227 None:intergenic 55.0%
!! GCAACGAAGAGTACCGGTCT+AGG - chr3.1:81193287-81193306 MS.gene38563:CDS 55.0%
!! GTTGGTGGGTTCACAGGTGA+AGG + chr3.1:81196202-81196221 None:intergenic 55.0%
CAGCAGACTGCAGCCTCAAG+AGG + chr3.1:81196316-81196335 None:intergenic 60.0%
GGTGAAGGAGGAGATGGTCC+AGG + chr3.1:81196187-81196206 None:intergenic 60.0%
! GGTGGGTTCACAGGTGAAGG+AGG + chr3.1:81196199-81196218 None:intergenic 60.0%
GAGGAGTGGCGCGTGAAGCA+CGG - chr3.1:81193124-81193143 MS.gene38563:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 81192965 81196726 81192965 ID=MS.gene38563
chr3.1 mRNA 81192965 81196726 81192965 ID=MS.gene38563.t1;Parent=MS.gene38563
chr3.1 exon 81196237 81196726 81196237 ID=MS.gene38563.t1.exon1;Parent=MS.gene38563.t1
chr3.1 CDS 81196237 81196726 81196237 ID=cds.MS.gene38563.t1;Parent=MS.gene38563.t1
chr3.1 exon 81194487 81194722 81194487 ID=MS.gene38563.t1.exon2;Parent=MS.gene38563.t1
chr3.1 CDS 81194487 81194722 81194487 ID=cds.MS.gene38563.t1;Parent=MS.gene38563.t1
chr3.1 exon 81194251 81194391 81194251 ID=MS.gene38563.t1.exon3;Parent=MS.gene38563.t1
chr3.1 CDS 81194251 81194391 81194251 ID=cds.MS.gene38563.t1;Parent=MS.gene38563.t1
chr3.1 exon 81193286 81193738 81193286 ID=MS.gene38563.t1.exon4;Parent=MS.gene38563.t1
chr3.1 CDS 81193286 81193738 81193286 ID=cds.MS.gene38563.t1;Parent=MS.gene38563.t1
chr3.1 exon 81192965 81193060 81192965 ID=MS.gene38563.t1.exon5;Parent=MS.gene38563.t1
chr3.1 CDS 81192965 81193060 81192965 ID=cds.MS.gene38563.t1;Parent=MS.gene38563.t1
Gene Sequence

>MS.gene38563

ATGGGTTCTAATTCTAATAGATCACCAATGTTATTTATCTTGATCGTGTTCACGCTCTTCTCAGCAACATTTGCCTTGGATATGTCTATCATTTCCTATGACAAAACCCACGCAGACAAATCTTCATGGCGTAGTGACAAAGAGGTAAAGACTATGTACGAGGAGTGGCGCGTGAAGCACGGAAAGCTCAATAACAACAACATAGACGAAAGCGAAAAGGATAAGAGATTTGAAATCTTCAAAGACAACCTCAAGTTCATAGACGAGCACAATGCTGAAAACCGGACATACAAGGTTGGGTTGAACCGGTTCGCTGATCTTAGCAACGAAGAGTACCGGTCTAGGTACTTGGGAACCAAGATTGACCCAATTGGAAGGACAAAGACCAGGAGCAATCGTTATGCTCCAAGCGTTGGTGACAAATTGCCCAAATCTGTTGATTGGAGGAATCAAGGTGCTGTGGTCCAAGTCAAAGACCAAGGAAGTTGTGGTAAGTTCTACTCGTTTAACTATTGTCTTTGTGTACTTTTTTTTTTTTTTTTTTTTGTGCGTGTGGTTACATTGTCTTATTATGTTAGTCCCTCATTCACTTTGTTAGAGTAAATATCCAATTGTTGATACTATTCTAAAATGATTTTTGAAATTGTAAAATTTAAATTAAATTCGTTCTTCAATTTTTGATTGTAGGGACTCTTTTGGCTTTTTTTACAATTGATCTAGTGGCTAGTACATCCCGAGTTCGAATTCGAGATTTCACATAAAATATACTCGCAATTAAACCATTAGATTGTAACAATGAGAACAAGTAATTGTAGGGACTAAAGTGGCATTAAGTTGATTATATTGAGGATGAGTTCGAACCTAAGTGAATAATTCCAGCATTTGATGGTAGATTTTTAATATTTCATGAATCGTTTTAGAACATTGTTAATATGATTGCTTAGATTGATAGAATTTTATGTTTTCAAGGACTAAAACAATTATGTTTATATGTATAAATTTTTGTAAAAATATTAATTGATGTTCAAAAATATCAAGTCCATATTTATATCTATTACGTGTTACTTCCTCCACCACATTGCCACATTATAAGTCATTTAATTTTTTTTAATAAATTATAAATCATTTAAAATAGAGATTAATTTCTATACATCGACATAAAACTTTTTTGCATATGCATTCAATCAATCACATTAAATAGGTATTTTTAGAGATATTTTAGGAAATAAACTAAAAATGTAGCACCATAGAGTGATTTACAAAAATTATGAATTATTCCACTTTTTTAAATTATCTTTCATTAGATAGATAATATTGTTTGCTAAATAGGAAATAAACTAAAAATGTAGCACCATAGAGTGCTTTACAAAAATTATGAATTATTCCACTTTTTTATATTATCTTTCATTAGATAATATTGTTTGCTAAAATAATTTATATCACGAGACTTATAATATTTATCATTTAGTTTAACCGTTTTTTTTTTTTTTGAAAGGATCATTTAGTTTAACCGTTAATTTTTCCAAACACTATAAGTTTAATAATTAACTTATCTACTATTTGTTATCTGCTATAAGATAGCTTATTTTTTTATCAAACAGAGCCGTTGTATTTTTTACATTATGGTTAAGGTAGACACTAAACATGAAATGTTTCTAAATGAGTAAATTTTGTACCACCAACTCAACTGACAGGGAAAATGTCGATTACTTATTTGTTTTTAACAAAGGTTGGTTGAGTTGGTGAGGAGTTCAACTCCAGCGAGAAGACCACCATTTTGGATAATCAATAGTAATTGACATTTTCCGGGTTAAAAAAATAAAATTAACATTTTTAAAATTTTAAATAGGATAAATTTTAGAATAGCTCATAAAATTAATGAAGGGTGTGAATATATATTTTATAATGCCAATAACCTGGTTCCTTCATTTTTTTTCGGTGAATATAGATACTGTTCTGCAACTAACTGAGATCCTCTACTCTTTTTTTCTTTTTTAAATGAAGGGAGCTGCTGGGCTTTTTCAACAATTGCTGCAGTTGAAGGGATTAACAAGATAGTCACAGGAGAGCTTGTTTCACTATCAGAACAAGAACTGGTTGATTGTGACAGAACAGTTAATGCAGGTTGCGATGGCGGACTTATGGAATATGCCTTTGAGTTCATTATAAACAATGGTGGTATTGACAGCGATGAGGATTATCCCTATCGTGGCGTTGATGGTAAATGTGATCAATACAAGGTTAGTTAGTCTTCATTTTTTGATGAATTAACAACTGCTTGTAATATTTCTCACTCCAATAATTGCTTATAGTTTTCTCTGCTGTCTTGTCTCAGAAAAATGCTAGAGTTGTTTCAATTGATGACTACGAACAGGTTCCTGCCTATGATGAGTTAGCCTTGAAAAAGGCTGTAGCTAATCAGCCAATCAGTGTTGCCATTGAAGCTGGTGGTAGGGAATTCCAGTTATATGTATCCGTAAGTTTCTTATTCTAACTTACTCGGCTCGCCGGAGTAAAATAAAAGCTCCTAATCATAATTCATACAGTACGAGTAGAAGGGAAAGAGTCGAAACTAGTAATGCATGCTAAAGCATAAAATTGTGCCTTATATTTAATCTAATCAGTACATATGTGAATTTGGCCTAATCTCTTTCAACTGTAAGTTAGATTGATATGTAATCATTTCTGCACATTCTTATTGGACTATGATTAACAGCATAAGTATTTGGTAAGGGACACCTAAGAAGTTAGAAGTCAGAGGTCCACGATTCAGCGTAACCACTAACTTACTAACTCTAGCCTATCAAAAAAATTATTTGACTATGATACTTGAATTATTATTGTTGTTGTTATTTCTGTTATTCACAAGAATTTACAAGGCCTTCTGAAAGTACATTTGCTAGACTCTCTTGTACGTATAACGTATCTATGTGAATTGCTTTCTTTGTTTTCTGGCTTTAGGTATTCTACTTATCACAATTTTTGCAGGGTATATTCACAGGAAAATGTGGGACAGCATTAGACCATGGTGTTACCGTTGTTGGGTATGGAACAGAAAATGGAGTTGATTATTGGATAGTAAGAAATTCATGGGGTAAGAGCTGGGGAGAATCAGGCTATGTAAGAATGGAACGTAATCTAGCAACAAGCGTGGCAGGTAAATGTGGAATTGCAATGCAGTCTTCCTATCCCATAAAGAAGGGCCAAAATCCCCCAAATCCTGGACCATCTCCTCCTTCACCTGTGAACCCACCAACCGTTTGTAGTAGATATCACAGTTGTGCTTCAAGCACTACTTGTTGTTGTGTACTTGGAATTGGAAAACTTTGCTTTTCATGGGGATGTTGTCCTCTTGAGGCTGCAGTCTGCTGTAAAGATCACTCAAGTTGTTGTCCTCATGACTATCCCATTTGCAACATTCACCAAGGGACCTGTCTCAGGGTAAATGCTACACACACACATATATATGACACACTTGGCATTATGGCATATTTTCCTTTAAACTAACAAAAGTGTCAGAAAACGTGTTAAATTTTGCAGCATATTATTTGGGGAAGACTTTTTCTTAGAATAGATAGATAAATATATACTGAGTTTCCCATTGAAGACTTAACTTTGCATTATCACTAAATAAATATGCACTATTTGAATTGGTTTATCTTGCAGAGTAAGGATAATCCATTTGGAGTGAAGGCAATGGAGAGAACTCCAGCTAAACTGCACTGGCCTTTTGGAGGTCAGAATGAGATAAATATTGCTTAA
Protein sequence

>MS.gene38563.t1

MGSNSNRSPMLFILIVFTLFSATFALDMSIISYDKTHADKSSWRSDKEVKTMYEEWRVKHGKLNNNNIDESEKDKRFEIFKDNLKFIDEHNAENRTYKVGLNRFADLSNEEYRSRYLGTKIDPIGRTKTRSNRYAPSVGDKLPKSVDWRNQGAVVQVKDQGSCGSCWAFSTIAAVEGINKIVTGELVSLSEQELVDCDRTVNAGCDGGLMEYAFEFIINNGGIDSDEDYPYRGVDGKCDQYKKNARVVSIDDYEQVPAYDELALKKAVANQPISVAIEAGGREFQLYVSGIFTGKCGTALDHGVTVVGYGTENGVDYWIVRNSWGKSWGESGYVRMERNLATSVAGKCGIAMQSSYPIKKGQNPPNPGPSPPSPVNPPTVCSRYHSCASSTTCCCVLGIGKLCFSWGCCPLEAAVCCKDHSSCCPHDYPICNIHQGTCLRSKDNPFGVKAMERTPAKLHWPFGGQNEINIA