AlfalfaGEDB | MS.gene38679

M. sativa cultivar XinJiangDaYe / MS.gene38679

KEGG: K14495
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38679.t1	XP_013461725.1	94.9	178	5	1	1	178	1	174	1.80E-81	312

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38679.t1	Q9STX3	60.0	155	39	1	24	178	16	147	1.5e-44	180.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38679.t1	I3T3Z8	94.9	178	5	1	1	178	1	174	1.3e-81	312.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049711	MS.gene38679	0.808398	3.16E-50	-1.69E-46
MS.gene051201	MS.gene38679	0.831563	1.56E-55	-1.69E-46
MS.gene051279	MS.gene38679	0.821945	3.08E-53	-1.69E-46
MS.gene052016	MS.gene38679	0.802753	4.83E-49	-1.69E-46
MS.gene052463	MS.gene38679	0.821203	4.58E-53	-1.69E-46
MS.gene054178	MS.gene38679	0.818932	1.51E-52	-1.69E-46
MS.gene056677	MS.gene38679	0.800435	1.44E-48	-1.69E-46
MS.gene05686	MS.gene38679	0.809741	1.63E-50	-1.69E-46
MS.gene058289	MS.gene38679	0.81537	9.57E-52	-1.69E-46
MS.gene059965	MS.gene38679	0.819679	1.02E-52	-1.69E-46

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38679.t1	MTR_3g102470	94.944	178	5	1	1	178	1	174	3.66e-123	344
MS.gene38679.t1	MTR_7g014710	90.000	40	4	0	1	40	1	40	1.32e-17	74.7

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38679.t1	AT4G24210	60.000	155	39	1	24	178	16	147	1.59e-61	187
MS.gene38679.t1	AT5G48170	28.346	127	66	3	45	171	32	133	1.96e-11	59.7

Showing 1 to 2 of 2 entries

Previous1Next

Find 21 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAAACAGTGGGCTAACAC+TGG	0.611464	3.3:-84685383	MS.gene38679:CDS
ACCTCGTTTGGGAAAAGACG+AGG	0.618915	3.3:-84685192	MS.gene38679:CDS
AGCTGATCTGTACAAAACAG+TGG	0.655674	3.3:-84685394	MS.gene38679:CDS
ATGTTCTTCTTCATCATCAT+GGG	0.407721	3.3:-84685249	MS.gene38679:CDS
CAGTGGGCTAACACTGGCTG+TGG	0.598913	3.3:-84685377	MS.gene38679:CDS
CATGTTCTTCTTCATCATCA+TGG	0.373154	3.3:-84685250	MS.gene38679:CDS
CGATCTGTTGTTCTTGCTCT+TGG	0.347661	3.3:-84685341	MS.gene38679:CDS
CTAGTTGTGTGAACAAACAA+TGG	0.693160	3.3:-84685448	MS.gene38679:CDS
CTGCACAAGATGAGAGACTT+TGG	0.406241	3.3:-84685418	MS.gene38679:CDS
GACCTTATCACTTGTGGTAT+TGG	0.306662	3.3:+84685224	None:intergenic

Showing 1 to 10 of 21 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGTTCTTCTTCATCATCAT+GGG	-	chr3.3:84685507-84685526	MS.gene38679:CDS	30.0%
TGAAGACAGAAAAATGAAGA+GGG	-	chr3.3:84685150-84685169	MS.gene38679:CDS	30.0%
CATGTTCTTCTTCATCATCA+TGG	-	chr3.3:84685506-84685525	MS.gene38679:CDS	35.0%
CTAGTTGTGTGAACAAACAA+TGG	-	chr3.3:84685308-84685327	MS.gene38679:CDS	35.0%
GTGAAGACAGAAAAATGAAG+AGG	-	chr3.3:84685149-84685168	MS.gene38679:CDS	35.0%
TGTTCTTCTTCATCATCATG+GGG	-	chr3.3:84685508-84685527	MS.gene38679:CDS	35.0%
AGCTGATCTGTACAAAACAG+TGG	-	chr3.3:84685362-84685381	MS.gene38679:CDS	40.0%
CAGAAAAATGAAGAGGGTGA+AGG	-	chr3.3:84685156-84685175	MS.gene38679:CDS	40.0%
GACCTTATCACTTGTGGTAT+TGG	+	chr3.3:84685535-84685554	None:intergenic	40.0%
GCTGATCTGTACAAAACAGT+GGG	-	chr3.3:84685363-84685382	MS.gene38679:CDS	40.0%

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	84685121	84685657	84685121	ID=MS.gene38679
chr3.3	mRNA	84685121	84685657	84685121	ID=MS.gene38679.t1;Parent=MS.gene38679
chr3.3	exon	84685121	84685657	84685121	ID=MS.gene38679.t1.exon1;Parent=MS.gene38679.t1
chr3.3	CDS	84685121	84685657	84685121	ID=cds.MS.gene38679.t1;Parent=MS.gene38679.t1

Gene Sequence

>MS.gene38679

ATGAAGCGTTCACTTTCATCAGCAACCAGTGAAGACAGAAAAATGAAGAGGGTGAAGGAAGAAGAAAGCGATGAAAACAGTGAAAAAATTGATGGGGTTTGTGAGAAGAATCGAGGGCTAGCGAGTTTTGACGAGAATATGTTGTTTGAAGTTCTGAAACACGTTGACGCAAAGACTTTAGCTATGTCTAGTTGTGTGAACAAACAATGGCACAAAACTGCACAAGATGAGAGACTTTGGGAGCTGATCTGTACAAAACAGTGGGCTAACACTGGCTGTGGTGAACAACAGTTACGATCTGTTGTTCTTGCTCTTGGTGGATTTCGTCGTCTTCATTCTCTTTATCTTTTACCTCTTTCAAAGCCTCAAACATCATCATCATCATCATGTTCTTCTTCATCATCATGGGGTCCAATACCACAAGTGATAAGGTCTAAGCCTTTACCTCGTTTGGGAAAAGACGAGGTTCATCTCTCACTTTCACTTCTCTCTATTCGTTATTACGAGAAGATGAATTTCAACAACAGAAACCTATGA

Protein sequence

>MS.gene38679.t1

MKRSLSSATSEDRKMKRVKEEESDENSEKIDGVCEKNRGLASFDENMLFEVLKHVDAKTLAMSSCVNKQWHKTAQDERLWELICTKQWANTGCGEQQLRSVVLALGGFRRLHSLYLLPLSKPQTSSSSSCSSSSSWGPIPQVIRSKPLPRLGKDEVHLSLSLLSIRYYEKMNFNNRNL