Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39556.t1 | XP_013456900.1 | 95.5 | 286 | 9 | 2 | 1 | 282 | 1 | 286 | 2.80E-145 | 524.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39556.t1 | Q8GYB1 | 78.2 | 216 | 45 | 2 | 60 | 274 | 71 | 285 | 2.9e-90 | 333.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39556.t1 | A0A072UNI2 | 95.5 | 286 | 9 | 2 | 1 | 282 | 1 | 286 | 2.0e-145 | 524.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049499 | MS.gene39556 | 0.803981 | 2.69E-49 | -1.69E-46 |
| MS.gene050556 | MS.gene39556 | 0.817094 | 3.94E-52 | -1.69E-46 |
| MS.gene051490 | MS.gene39556 | 0.807496 | 4.91E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene39556 | 0.833755 | 4.44E-56 | -1.69E-46 |
| MS.gene059170 | MS.gene39556 | 0.809897 | 1.51E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene39556 | 0.822967 | 1.78E-53 | -1.69E-46 |
| MS.gene060870 | MS.gene39556 | 0.802079 | 6.65E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene39556 | 0.807708 | 4.43E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39556.t1 | MTR_4g087905 | 95.455 | 286 | 9 | 2 | 1 | 282 | 1 | 286 | 0.0 | 550 |
| MS.gene39556.t1 | MTR_2g015380 | 55.556 | 243 | 79 | 4 | 27 | 269 | 2 | 215 | 6.09e-91 | 269 |
| MS.gene39556.t1 | MTR_2g015380 | 46.091 | 243 | 62 | 5 | 27 | 269 | 2 | 175 | 5.08e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39556.t1 | AT1G28960 | 70.775 | 284 | 77 | 4 | 3 | 281 | 10 | 292 | 4.60e-135 | 384 |
| MS.gene39556.t1 | AT1G28960 | 70.775 | 284 | 77 | 4 | 3 | 281 | 10 | 292 | 4.60e-135 | 384 |
| MS.gene39556.t1 | AT1G28960 | 70.775 | 284 | 77 | 4 | 3 | 281 | 10 | 292 | 4.60e-135 | 384 |
| MS.gene39556.t1 | AT1G28960 | 71.480 | 277 | 73 | 4 | 3 | 274 | 10 | 285 | 4.53e-133 | 378 |
| MS.gene39556.t1 | AT1G28960 | 71.480 | 277 | 73 | 4 | 3 | 274 | 10 | 285 | 4.53e-133 | 378 |
| MS.gene39556.t1 | AT2G33980 | 68.421 | 247 | 71 | 3 | 30 | 274 | 18 | 259 | 2.10e-115 | 332 |
| MS.gene39556.t1 | AT2G33980 | 68.421 | 247 | 71 | 3 | 30 | 274 | 18 | 259 | 2.10e-115 | 332 |
| MS.gene39556.t1 | AT2G33980 | 68.421 | 247 | 71 | 3 | 30 | 274 | 18 | 259 | 8.29e-115 | 332 |
| MS.gene39556.t1 | AT2G33980 | 68.421 | 247 | 71 | 3 | 30 | 274 | 18 | 259 | 1.30e-114 | 333 |
| MS.gene39556.t1 | AT5G45940 | 61.376 | 189 | 69 | 2 | 85 | 269 | 29 | 217 | 8.63e-79 | 238 |
| MS.gene39556.t1 | AT5G45940 | 63.281 | 128 | 44 | 1 | 85 | 209 | 29 | 156 | 4.90e-51 | 165 |
| MS.gene39556.t1 | AT5G45940 | 64.286 | 126 | 42 | 1 | 85 | 207 | 29 | 154 | 1.26e-50 | 164 |
Find 72 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTGTGGAACTTTGAATT+TGG | 0.148694 | 4.2:-23338318 | None:intergenic |
| TGAATCATGGTAGCTGATTC+AGG | 0.246118 | 4.2:-23336034 | None:intergenic |
| GTAACAACATTGACTAGTTT+TGG | 0.246703 | 4.2:-23336593 | None:intergenic |
| TTCTTAGGACTAAATTTATC+TGG | 0.253323 | 4.2:-23336061 | None:intergenic |
| CGAGAGGCAGAAGAGGAAAT+TGG | 0.270083 | 4.2:+23336563 | MS.gene39556:CDS |
| TCTTGAACCATTCTTGTCTA+AGG | 0.274255 | 4.2:+23336619 | MS.gene39556:CDS |
| CTCTGTTCCAAAACATCTTC+AGG | 0.287071 | 4.2:-23335968 | None:intergenic |
| TGGCAAAGTTGTTTCTCAAT+TGG | 0.304222 | 4.2:+23336006 | MS.gene39556:CDS |
| ATCAAAACAGCAGCTTTCTT+AGG | 0.317340 | 4.2:-23336076 | None:intergenic |
| ACCTGTGGAACTTTGAATTT+GGG | 0.326845 | 4.2:-23338317 | None:intergenic |
| GGCAAAGTTGTTTCTCAATT+GGG | 0.351294 | 4.2:+23336007 | MS.gene39556:CDS |
| AAGGTGATGATGGGGATCTA+AGG | 0.355981 | 4.2:+23336110 | MS.gene39556:CDS |
| TTGGTGACAGATACTGTTCT+TGG | 0.364656 | 4.2:-23335857 | None:intergenic |
| CGATGACAGGAACTACTCTT+AGG | 0.397188 | 4.2:-23337938 | None:intergenic |
| TGCAGCCCTAATCAAAATTC+CGG | 0.409951 | 4.2:-23338252 | None:intergenic |
| TCAGGAGGAGAGAGAGTGGA+TGG | 0.414184 | 4.2:+23338154 | MS.gene39556:CDS |
| CCTTCCTCCGCTTTCCCACC+AGG | 0.426104 | 4.2:-23336512 | None:intergenic |
| GAAAGCGGAGGAAGGGGATA+AGG | 0.452799 | 4.2:+23336520 | MS.gene39556:CDS |
| TGTTTATTTGAAGGTGATGA+TGG | 0.461797 | 4.2:+23336100 | MS.gene39556:CDS |
| ACCTGAGTGAGTAGAGAGCT+TGG | 0.464566 | 4.2:-23336155 | None:intergenic |
| AATACTGATTCCACTTCTGC+AGG | 0.466410 | 4.2:-23338002 | None:intergenic |
| ACTTCTGCAGGATTCAGAAC+AGG | 0.470641 | 4.2:-23337990 | None:intergenic |
| TGGTGGGAAAGCGGAGGAAG+GGG | 0.473889 | 4.2:+23336514 | MS.gene39556:CDS |
| GCTTTAAGCAGGATGAAAAT+CGG | 0.478548 | 4.2:+23338129 | MS.gene39556:intron |
| CCTGGTGGGAAAGCGGAGGA+AGG | 0.480967 | 4.2:+23336512 | MS.gene39556:CDS |
| TCCAAAACATCTTCAGGAAA+AGG | 0.484289 | 4.2:-23335962 | None:intergenic |
| GAGAGGCAGAAGAGGAAATT+GGG | 0.494487 | 4.2:+23336564 | MS.gene39556:CDS |
| TGTTCTGAATCCTGCAGAAG+TGG | 0.496762 | 4.2:+23337992 | MS.gene39556:CDS |
| CTGGTGGGAAAGCGGAGGAA+GGG | 0.497359 | 4.2:+23336513 | MS.gene39556:CDS |
| GCAGGATGAAAATCGGAGTC+AGG | 0.500021 | 4.2:+23338136 | MS.gene39556:intron |
| ACCTTGAGAAACATTTCTAA+AGG | 0.505593 | 4.2:-23338032 | None:intergenic |
| TCCCAAATTCAAAGTTCCAC+AGG | 0.509189 | 4.2:+23338316 | MS.gene39556:CDS |
| CTGCATCAATTGTGTACAAA+CGG | 0.513281 | 4.2:+23338270 | MS.gene39556:CDS |
| CTCATATGGGGATTGACTGC+CGG | 0.519065 | 4.2:+23338233 | MS.gene39556:CDS |
| GGAAGAAGAATCCATGACTT+TGG | 0.522178 | 4.2:-23335876 | None:intergenic |
| GGCAGAAGAGGAAATTGGGT+TGG | 0.528513 | 4.2:+23336568 | MS.gene39556:CDS |
| ATGGATTCTTCTTCCAGTGG+TGG | 0.530689 | 4.2:+23335884 | MS.gene39556:CDS |
| TCATGAAGTATGCCGATGAC+AGG | 0.534330 | 4.2:-23337951 | None:intergenic |
| CAGGAGGAGAGAGAGTGGAT+GGG | 0.539082 | 4.2:+23338155 | MS.gene39556:CDS |
| GGAGTCAGGAGGAGAGAGAG+TGG | 0.541128 | 4.2:+23338150 | MS.gene39556:CDS |
| GTTTATTTGAAGGTGATGAT+GGG | 0.545292 | 4.2:+23336101 | MS.gene39556:CDS |
| ACCTTTAGAAATGTTTCTCA+AGG | 0.548045 | 4.2:+23338031 | MS.gene39556:CDS |
| GGATTCTGCTCTATGAAAGC+CGG | 0.548477 | 4.2:-23338296 | None:intergenic |
| AGGTGATGATGGGGATCTAA+GGG | 0.549052 | 4.2:+23336111 | MS.gene39556:CDS |
| TGCAAAACGAGAGGCAGAAG+AGG | 0.549211 | 4.2:+23336556 | MS.gene39556:CDS |
| ATCTCAGAGACTTCTTGCGT+TGG | 0.549765 | 4.2:+23335907 | MS.gene39556:CDS |
| AGTTCCACAGGTTGTAAGCA+AGG | 0.560370 | 4.2:+23338328 | MS.gene39556:CDS |
| CTATCCTTGCTTACAACCTG+TGG | 0.562710 | 4.2:-23338332 | None:intergenic |
| ATAGATACCTTAGACAAGAA+TGG | 0.563801 | 4.2:-23336626 | None:intergenic |
| AATTGTGTACAAACGGCCAC+CGG | 0.564192 | 4.2:+23338277 | MS.gene39556:CDS |
| TCTTCAGGAAAAGGTGGTGG+TGG | 0.564320 | 4.2:-23335953 | None:intergenic |
| GTCATTGCCTGGTGGGAAAG+CGG | 0.565959 | 4.2:+23336505 | MS.gene39556:CDS |
| AGTATCTGTCACCAAAGTCA+TGG | 0.580073 | 4.2:+23335865 | MS.gene39556:CDS |
| CTAAGAGTAGTTCCTGTCAT+CGG | 0.582497 | 4.2:+23337939 | MS.gene39556:CDS |
| GTAGGTGAAGTGTCATTGCC+TGG | 0.586937 | 4.2:+23336494 | MS.gene39556:intron |
| AGGATAGTTCAATGACTTGA+CGG | 0.587268 | 4.2:+23338348 | MS.gene39556:CDS |
| CGCGGCCACTGCAAAACGAG+AGG | 0.591310 | 4.2:+23336547 | MS.gene39556:CDS |
| ACATCTTCAGGAAAAGGTGG+TGG | 0.591697 | 4.2:-23335956 | None:intergenic |
| TCCAAGCTCTCTACTCACTC+AGG | 0.594205 | 4.2:+23336154 | MS.gene39556:CDS |
| GTCATGGATTCTTCTTCCAG+TGG | 0.604832 | 4.2:+23335881 | MS.gene39556:CDS |
| TGACAGGAACTACTCTTAGG+AGG | 0.607814 | 4.2:-23337935 | None:intergenic |
| AAGTCTCTGAGATCCACCAC+TGG | 0.613439 | 4.2:-23335897 | None:intergenic |
| TTTATTTGAAGGTGATGATG+GGG | 0.628042 | 4.2:+23336102 | MS.gene39556:CDS |
| GGATGAAAATCGGAGTCAGG+AGG | 0.629081 | 4.2:+23338139 | MS.gene39556:intron |
| AAAACATCTTCAGGAAAAGG+TGG | 0.635918 | 4.2:-23335959 | None:intergenic |
| GAACAGAGCATTGAAGAGAG+TGG | 0.639203 | 4.2:+23335983 | MS.gene39556:CDS |
| TTCTGCTCTATGAAAGCCGG+TGG | 0.643205 | 4.2:-23338293 | None:intergenic |
| GTGAAGTGTCATTGCCTGGT+GGG | 0.658192 | 4.2:+23336498 | MS.gene39556:CDS |
| ATTGCCTGGTGGGAAAGCGG+AGG | 0.658525 | 4.2:+23336508 | MS.gene39556:CDS |
| CAGAGCATTGAAGAGAGTGG+TGG | 0.680698 | 4.2:+23335986 | MS.gene39556:CDS |
| GGTGAAGTGTCATTGCCTGG+TGG | 0.686704 | 4.2:+23336497 | MS.gene39556:intron |
| GGAAGGGGATAAGGACGACG+CGG | 0.736631 | 4.2:+23336529 | MS.gene39556:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATCATTTTAAGAAAA+GGG | - | chr4.2:23337190-23337209 | None:intergenic | 10.0% |
| !!! | TTATAAATCATTTTAAGAAA+AGG | - | chr4.2:23337191-23337210 | None:intergenic | 10.0% |
| !!! | TTTTCTTTAATAGGAAAAAA+AGG | - | chr4.2:23337344-23337363 | None:intergenic | 15.0% |
| !! | GGGTTATAAATTTGTATTAT+TGG | + | chr4.2:23337770-23337789 | MS.gene39556:intron | 20.0% |
| !! | TTTGGTTATTTGAATTTAGA+GGG | + | chr4.2:23336433-23336452 | MS.gene39556:intron | 20.0% |
| !!! | GAAATTTATTTGTTGGATAA+TGG | + | chr4.2:23337655-23337674 | MS.gene39556:intron | 20.0% |
| !!! | GTTTTGATTTGTTTATTTGA+AGG | + | chr4.2:23336091-23336110 | MS.gene39556:CDS | 20.0% |
| !!! | TACTTTAGTTATTGTGATTT+TGG | + | chr4.2:23336415-23336434 | MS.gene39556:intron | 20.0% |
| !!! | TTTCAGCAATTTTCTTTAAT+AGG | - | chr4.2:23337353-23337372 | None:intergenic | 20.0% |
| !!! | TTTTGGTTATTTGAATTTAG+AGG | + | chr4.2:23336432-23336451 | MS.gene39556:intron | 20.0% |
| !!! | TTTTTTTAGACAAATGTTAG+TGG | + | chr4.2:23336257-23336276 | MS.gene39556:intron | 20.0% |
| ! | AATTCCTGAAAACAATAAAC+AGG | - | chr4.2:23337227-23337246 | None:intergenic | 25.0% |
| ! | AGCAGAAAAAATATCTCATA+TGG | + | chr4.2:23338219-23338238 | MS.gene39556:CDS | 25.0% |
| ! | CAGAAAAAATATCTCATATG+GGG | + | chr4.2:23338221-23338240 | MS.gene39556:CDS | 25.0% |
| ! | GATTGGTGAAATTTATTTGT+TGG | + | chr4.2:23337648-23337667 | MS.gene39556:intron | 25.0% |
| ! | GCAGAAAAAATATCTCATAT+GGG | + | chr4.2:23338220-23338239 | MS.gene39556:CDS | 25.0% |
| ! | TAAAGATTCAAAATTCCAAG+TGG | - | chr4.2:23336703-23336722 | None:intergenic | 25.0% |
| ! | TGTCTTTAAATCATGATTTG+TGG | + | chr4.2:23336796-23336815 | MS.gene39556:intron | 25.0% |
| ! | TTCTTAGGACTAAATTTATC+TGG | - | chr4.2:23336064-23336083 | None:intergenic | 25.0% |
| !! | GTATTATATTTAGCTCATGA+AGG | + | chr4.2:23336818-23336837 | MS.gene39556:intron | 25.0% |
| !! | TTTATCTGGATTTTGAATCA+TGG | - | chr4.2:23336050-23336069 | None:intergenic | 25.0% |
| !!! | CTAGAAAATGTTGATTTTGT+TGG | + | chr4.2:23336771-23336790 | MS.gene39556:intron | 25.0% |
| AAAGCATAAGTTCGTTATAG+TGG | - | chr4.2:23337452-23337471 | None:intergenic | 30.0% | |
| AAATTTATGTCTGCGATTGA+TGG | + | chr4.2:23336725-23336744 | MS.gene39556:intron | 30.0% | |
| AATTTAGAGGGAATGAATTG+AGG | + | chr4.2:23336445-23336464 | MS.gene39556:intron | 30.0% | |
| ACCTTGAGAAACATTTCTAA+AGG | - | chr4.2:23338035-23338054 | None:intergenic | 30.0% | |
| ATAGATACCTTAGACAAGAA+TGG | - | chr4.2:23336629-23336648 | None:intergenic | 30.0% | |
| ATTTAGAGGGAATGAATTGA+GGG | + | chr4.2:23336446-23336465 | MS.gene39556:intron | 30.0% | |
| CCAAGACAACAATCATAATA+AGG | - | chr4.2:23337073-23337092 | None:intergenic | 30.0% | |
| CCTTATTATGATTGTTGTCT+TGG | + | chr4.2:23337070-23337089 | MS.gene39556:intron | 30.0% | |
| CTGATGTAAACAAACTGATT+AGG | + | chr4.2:23337252-23337271 | MS.gene39556:intron | 30.0% | |
| GAGGAATAGACTAATAGAAA+AGG | - | chr4.2:23337836-23337855 | None:intergenic | 30.0% | |
| GCTGTAAAAGAAACAATGAT+AGG | - | chr4.2:23337914-23337933 | None:intergenic | 30.0% | |
| GTTTATTTGAAGGTGATGAT+GGG | + | chr4.2:23336101-23336120 | MS.gene39556:CDS | 30.0% | |
| TAACAACACTCCATAGATTT+AGG | + | chr4.2:23337576-23337595 | MS.gene39556:intron | 30.0% | |
| TAGAAGATAGATAACACACA+GGG | + | chr4.2:23336289-23336308 | MS.gene39556:intron | 30.0% | |
| TGTTTATTTGAAGGTGATGA+TGG | + | chr4.2:23336100-23336119 | MS.gene39556:CDS | 30.0% | |
| TTAATTGAGTATTCTCCACT+TGG | + | chr4.2:23336685-23336704 | MS.gene39556:intron | 30.0% | |
| TTAGAAGATAGATAACACAC+AGG | + | chr4.2:23336288-23336307 | MS.gene39556:intron | 30.0% | |
| ! | ACCTTTAGAAATGTTTCTCA+AGG | + | chr4.2:23338031-23338050 | MS.gene39556:CDS | 30.0% |
| ! | CTAATCAGTTTGTTTACATC+AGG | - | chr4.2:23337254-23337273 | None:intergenic | 30.0% |
| ! | CTATCCTGTTTATTGTTTTC+AGG | + | chr4.2:23337220-23337239 | MS.gene39556:intron | 30.0% |
| ! | TTATGCTTTGAACTAGATAG+AGG | + | chr4.2:23337463-23337482 | MS.gene39556:intron | 30.0% |
| ! | TTTATTTGAAGGTGATGATG+GGG | + | chr4.2:23336102-23336121 | MS.gene39556:CDS | 30.0% |
| !!! | GTAACAACATTGACTAGTTT+TGG | - | chr4.2:23336596-23336615 | None:intergenic | 30.0% |
| !!! | TGCATAAAGTTTTGAAACTG+TGG | - | chr4.2:23337681-23337700 | None:intergenic | 30.0% |
| AAAACATCTTCAGGAAAAGG+TGG | - | chr4.2:23335962-23335981 | None:intergenic | 35.0% | |
| AAAAGTCATGTATCCATTGC+AGG | + | chr4.2:23337398-23337417 | MS.gene39556:intron | 35.0% | |
| AAATTTATAACCCGTGACTG+CGG | - | chr4.2:23337763-23337782 | None:intergenic | 35.0% | |
| AACCATTTGCCCAATAGTAT+AGG | - | chr4.2:23336377-23336396 | None:intergenic | 35.0% | |
| AACCTGTGGAACTTTGAATT+TGG | - | chr4.2:23338321-23338340 | None:intergenic | 35.0% | |
| AAGTATGACCATTTCAGAGT+CGG | + | chr4.2:23337736-23337755 | MS.gene39556:intron | 35.0% | |
| ACCTGTGGAACTTTGAATTT+GGG | - | chr4.2:23338320-23338339 | None:intergenic | 35.0% | |
| ACGTTCTTATTAGCAACGAT+TGG | + | chr4.2:23337631-23337650 | MS.gene39556:intron | 35.0% | |
| AGTCTATTCCTCATCTTCTT+CGG | + | chr4.2:23337844-23337863 | MS.gene39556:intron | 35.0% | |
| ATACTATTGGGCAAATGGTT+TGG | + | chr4.2:23336377-23336396 | MS.gene39556:intron | 35.0% | |
| ATCAAAACAGCAGCTTTCTT+AGG | - | chr4.2:23336079-23336098 | None:intergenic | 35.0% | |
| ATGTTTACATTCCCTGTTGT+TGG | + | chr4.2:23337798-23337817 | MS.gene39556:intron | 35.0% | |
| CTAAGAGATGTTGCATTCAA+TGG | + | chr4.2:23337308-23337327 | MS.gene39556:intron | 35.0% | |
| CTGCATCAATTGTGTACAAA+CGG | + | chr4.2:23338270-23338289 | MS.gene39556:CDS | 35.0% | |
| GCACATACACTTCTCATATT+AGG | - | chr4.2:23336320-23336339 | None:intergenic | 35.0% | |
| GGGTATGTATCTGATTCTTT+AGG | - | chr4.2:23337170-23337189 | None:intergenic | 35.0% | |
| GTCTGTATAAAGTAATGCAG+TGG | + | chr4.2:23337118-23337137 | MS.gene39556:intron | 35.0% | |
| GTGTAAACTATCCAACAACA+GGG | - | chr4.2:23337812-23337831 | None:intergenic | 35.0% | |
| GTTATGCTGTCCTAAATCTA+TGG | - | chr4.2:23337589-23337608 | None:intergenic | 35.0% | |
| TACTATTGGGCAAATGGTTT+GGG | + | chr4.2:23336378-23336397 | MS.gene39556:intron | 35.0% | |
| TCCAAAACATCTTCAGGAAA+AGG | - | chr4.2:23335965-23335984 | None:intergenic | 35.0% | |
| TCTTGAACCATTCTTGTCTA+AGG | + | chr4.2:23336619-23336638 | MS.gene39556:CDS | 35.0% | |
| TGTGTAAACTATCCAACAAC+AGG | - | chr4.2:23337813-23337832 | None:intergenic | 35.0% | |
| ! | ACCTTTTCCTGAAGATGTTT+TGG | + | chr4.2:23335961-23335980 | MS.gene39556:CDS | 35.0% |
| ! | GCTTTAAGCAGGATGAAAAT+CGG | + | chr4.2:23338129-23338148 | MS.gene39556:intron | 35.0% |
| ! | GGATACATGACTTTTACAGT+TGG | - | chr4.2:23337393-23337412 | None:intergenic | 35.0% |
| ! | GGTGTGTGTGTTTTATATGT+AGG | + | chr4.2:23336476-23336495 | MS.gene39556:intron | 35.0% |
| ! | TACATGACTTTTACAGTTGG+TGG | - | chr4.2:23337390-23337409 | None:intergenic | 35.0% |
| !! | GGCAAAGTTGTTTCTCAATT+GGG | + | chr4.2:23336007-23336026 | MS.gene39556:CDS | 35.0% |
| !! | TGGCAAAGTTGTTTCTCAAT+TGG | + | chr4.2:23336006-23336025 | MS.gene39556:CDS | 35.0% |
| ACTATTGGGCAAATGGTTTG+GGG | + | chr4.2:23336379-23336398 | MS.gene39556:intron | 40.0% | |
| AGCCTATACTATTGGGCAAA+TGG | + | chr4.2:23336372-23336391 | MS.gene39556:intron | 40.0% | |
| AGTATCTGTCACCAAAGTCA+TGG | + | chr4.2:23335865-23335884 | MS.gene39556:CDS | 40.0% | |
| ATTTGCCCAATAGTATAGGC+TGG | - | chr4.2:23336373-23336392 | None:intergenic | 40.0% | |
| CCATTGCAGGTCATTAAACT+GGG | + | chr4.2:23337411-23337430 | MS.gene39556:intron | 40.0% | |
| CTAAGAGTAGTTCCTGTCAT+CGG | + | chr4.2:23337939-23337958 | MS.gene39556:CDS | 40.0% | |
| CTCTGTTCCAAAACATCTTC+AGG | - | chr4.2:23335971-23335990 | None:intergenic | 40.0% | |
| CTTAAGTGCTCAGCATAAAC+AGG | + | chr4.2:23337536-23337555 | MS.gene39556:intron | 40.0% | |
| CTTTCAATCCGAAGAAGATG+AGG | - | chr4.2:23337855-23337874 | None:intergenic | 40.0% | |
| GGAAGAAGAATCCATGACTT+TGG | - | chr4.2:23335879-23335898 | None:intergenic | 40.0% | |
| TAAAGTAATGCAGTGGCCAT+TGG | + | chr4.2:23337125-23337144 | MS.gene39556:intron | 40.0% | |
| TACTTATTCCTCACACAGCA+TGG | - | chr4.2:23336849-23336868 | None:intergenic | 40.0% | |
| TCCATTGCAGGTCATTAAAC+TGG | + | chr4.2:23337410-23337429 | MS.gene39556:intron | 40.0% | |
| TCCCAAATTCAAAGTTCCAC+AGG | + | chr4.2:23338316-23338335 | MS.gene39556:CDS | 40.0% | |
| TGATAGGTGAGATGAAGTAC+TGG | - | chr4.2:23337898-23337917 | None:intergenic | 40.0% | |
| TGCAGCCCTAATCAAAATTC+CGG | - | chr4.2:23338255-23338274 | None:intergenic | 40.0% | |
| TTTGCCCAATAGTATAGGCT+GGG | - | chr4.2:23336372-23336391 | None:intergenic | 40.0% | |
| ! | TGAATCATGGTAGCTGATTC+AGG | - | chr4.2:23336037-23336056 | None:intergenic | 40.0% |
| ! | TGCGATTGATGGTTAGTTCA+TGG | + | chr4.2:23336736-23336755 | MS.gene39556:intron | 40.0% |
| ! | TTGGTGACAGATACTGTTCT+TGG | - | chr4.2:23335860-23335879 | None:intergenic | 40.0% |
| !! | AATACTGATTCCACTTCTGC+AGG | - | chr4.2:23338005-23338024 | None:intergenic | 40.0% |
| !! | CGGATTGAAAGTGTTCAATG+AGG | + | chr4.2:23337864-23337883 | MS.gene39556:intron | 40.0% |
| !!! | GACTGCCGGAATTTTGATTA+GGG | + | chr4.2:23338247-23338266 | MS.gene39556:CDS | 40.0% |
| !!! | TGACTGCCGGAATTTTGATT+AGG | + | chr4.2:23338246-23338265 | MS.gene39556:CDS | 40.0% |
| AATTGTGTACAAACGGCCAC+CGG | + | chr4.2:23338277-23338296 | MS.gene39556:CDS | 45.0% | |
| ACATCTTCAGGAAAAGGTGG+TGG | - | chr4.2:23335959-23335978 | None:intergenic | 45.0% | |
| ACTTCTGCAGGATTCAGAAC+AGG | - | chr4.2:23337993-23338012 | None:intergenic | 45.0% | |
| AGATACATGAAGTGCAGCTG+AGG | + | chr4.2:23337025-23337044 | MS.gene39556:intron | 45.0% | |
| AGGGAATGAATTGAGGGTTG+TGG | + | chr4.2:23336452-23336471 | MS.gene39556:intron | 45.0% | |
| AGTACGTACAACCATGAACG+TGG | - | chr4.2:23337290-23337309 | None:intergenic | 45.0% | |
| AGTTCCACAGGTTGTAAGCA+AGG | + | chr4.2:23338328-23338347 | MS.gene39556:CDS | 45.0% | |
| ATCCCATTCCCATTCACCAA+TGG | - | chr4.2:23337144-23337163 | None:intergenic | 45.0% | |
| ATCTCAGAGACTTCTTGCGT+TGG | + | chr4.2:23335907-23335926 | MS.gene39556:CDS | 45.0% | |
| ATGGATTCTTCTTCCAGTGG+TGG | + | chr4.2:23335884-23335903 | MS.gene39556:CDS | 45.0% | |
| CCCAGTTTAATGACCTGCAA+TGG | - | chr4.2:23337414-23337433 | None:intergenic | 45.0% | |
| CGATGACAGGAACTACTCTT+AGG | - | chr4.2:23337941-23337960 | None:intergenic | 45.0% | |
| CTATCCTTGCTTACAACCTG+TGG | - | chr4.2:23338335-23338354 | None:intergenic | 45.0% | |
| CTGAGATGATTGGAGATGGA+GGG | + | chr4.2:23336886-23336905 | MS.gene39556:intron | 45.0% | |
| GAATGAATTGAGGGTTGTGG+TGG | + | chr4.2:23336455-23336474 | MS.gene39556:intron | 45.0% | |
| GAGAGGCAGAAGAGGAAATT+GGG | + | chr4.2:23336564-23336583 | MS.gene39556:CDS | 45.0% | |
| GGATTCTGCTCTATGAAAGC+CGG | - | chr4.2:23338299-23338318 | None:intergenic | 45.0% | |
| GTCATGGATTCTTCTTCCAG+TGG | + | chr4.2:23335881-23335900 | MS.gene39556:CDS | 45.0% | |
| GTGTCCCAGCCTATACTATT+GGG | + | chr4.2:23336365-23336384 | MS.gene39556:intron | 45.0% | |
| TCAGCTGCACTTCATGTATC+TGG | - | chr4.2:23337026-23337045 | None:intergenic | 45.0% | |
| TCATGAAGTATGCCGATGAC+AGG | - | chr4.2:23337954-23337973 | None:intergenic | 45.0% | |
| TGACAGGAACTACTCTTAGG+AGG | - | chr4.2:23337938-23337957 | None:intergenic | 45.0% | |
| TGTGTCCCAGCCTATACTAT+TGG | + | chr4.2:23336364-23336383 | MS.gene39556:intron | 45.0% | |
| TTCTTCACTGTCCACGTTCA+TGG | + | chr4.2:23337276-23337295 | MS.gene39556:intron | 45.0% | |
| ! | CTATTGGGCAAATGGTTTGG+GGG | + | chr4.2:23336380-23336399 | MS.gene39556:intron | 45.0% |
| ! | CTGAAGCGATTGCTTTAAGC+AGG | + | chr4.2:23338118-23338137 | MS.gene39556:intron | 45.0% |
| ! | GAGTCTGAGATGATTGGAGA+TGG | + | chr4.2:23336882-23336901 | MS.gene39556:intron | 45.0% |
| ! | TCTGAGATGATTGGAGATGG+AGG | + | chr4.2:23336885-23336904 | MS.gene39556:intron | 45.0% |
| ! | TGCTCTGAGTCTGAGATGAT+TGG | + | chr4.2:23336876-23336895 | MS.gene39556:intron | 45.0% |
| ! | TGTTCTGAATCCTGCAGAAG+TGG | + | chr4.2:23337992-23338011 | MS.gene39556:CDS | 45.0% |
| !! | AAGGTGATGATGGGGATCTA+AGG | + | chr4.2:23336110-23336129 | MS.gene39556:CDS | 45.0% |
| !! | AGGTGATGATGGGGATCTAA+GGG | + | chr4.2:23336111-23336130 | MS.gene39556:CDS | 45.0% |
| !! | GAACAGAGCATTGAAGAGAG+TGG | + | chr4.2:23335983-23336002 | MS.gene39556:CDS | 45.0% |
| ACCTGAGTGAGTAGAGAGCT+TGG | - | chr4.2:23336158-23336177 | None:intergenic | 50.0% | |
| AGGAGATTCCATGCTGTGTG+AGG | + | chr4.2:23336838-23336857 | MS.gene39556:intron | 50.0% | |
| ATGCAGTGGCCATTGGTGAA+TGG | + | chr4.2:23337132-23337151 | MS.gene39556:intron | 50.0% | |
| CGAGAGGCAGAAGAGGAAAT+TGG | + | chr4.2:23336563-23336582 | MS.gene39556:CDS | 50.0% | |
| CTCATATGGGGATTGACTGC+CGG | + | chr4.2:23338233-23338252 | MS.gene39556:CDS | 50.0% | |
| GCAGGATGAAAATCGGAGTC+AGG | + | chr4.2:23338136-23338155 | MS.gene39556:intron | 50.0% | |
| GGATGAAAATCGGAGTCAGG+AGG | + | chr4.2:23338139-23338158 | MS.gene39556:intron | 50.0% | |
| GGCAGAAGAGGAAATTGGGT+TGG | + | chr4.2:23336568-23336587 | MS.gene39556:CDS | 50.0% | |
| GGCCATTGGTGAATGGGAAT+GGG | + | chr4.2:23337139-23337158 | MS.gene39556:intron | 50.0% | |
| TCCAAGCTCTCTACTCACTC+AGG | + | chr4.2:23336154-23336173 | MS.gene39556:CDS | 50.0% | |
| TGCAAAACGAGAGGCAGAAG+AGG | + | chr4.2:23336556-23336575 | MS.gene39556:CDS | 50.0% | |
| TGCAGTGGCCATTGGTGAAT+GGG | + | chr4.2:23337133-23337152 | MS.gene39556:intron | 50.0% | |
| TGGCCATTGGTGAATGGGAA+TGG | + | chr4.2:23337138-23337157 | MS.gene39556:intron | 50.0% | |
| TTCTGCTCTATGAAAGCCGG+TGG | - | chr4.2:23338296-23338315 | None:intergenic | 50.0% | |
| ! | GTAGGTGAAGTGTCATTGCC+TGG | + | chr4.2:23336494-23336513 | MS.gene39556:intron | 50.0% |
| ! | GTGAAGTGTCATTGCCTGGT+GGG | + | chr4.2:23336498-23336517 | MS.gene39556:CDS | 50.0% |
| ! | TCTTCAGGAAAAGGTGGTGG+TGG | - | chr4.2:23335956-23335975 | None:intergenic | 50.0% |
| ! | TTCTGCCTCTCGTTTTGCAG+TGG | - | chr4.2:23336555-23336574 | None:intergenic | 50.0% |
| !! | AAGTCTCTGAGATCCACCAC+TGG | - | chr4.2:23335900-23335919 | None:intergenic | 50.0% |
| !! | CAGAGCATTGAAGAGAGTGG+TGG | + | chr4.2:23335986-23336005 | MS.gene39556:CDS | 50.0% |
| CAGGAGGAGAGAGAGTGGAT+GGG | + | chr4.2:23338155-23338174 | MS.gene39556:CDS | 55.0% | |
| GAAAGCGGAGGAAGGGGATA+AGG | + | chr4.2:23336520-23336539 | MS.gene39556:CDS | 55.0% | |
| GTCATTGCCTGGTGGGAAAG+CGG | + | chr4.2:23336505-23336524 | MS.gene39556:CDS | 55.0% | |
| TCAGGAGGAGAGAGAGTGGA+TGG | + | chr4.2:23338154-23338173 | MS.gene39556:CDS | 55.0% | |
| ! | ACTGCGGACCGACTCTGAAA+TGG | - | chr4.2:23337747-23337766 | None:intergenic | 55.0% |
| ! | GGTGAAGTGTCATTGCCTGG+TGG | + | chr4.2:23336497-23336516 | MS.gene39556:intron | 55.0% |
| !! | ACAGTTGGTGGCACGAGCAA+TGG | - | chr4.2:23337378-23337397 | None:intergenic | 55.0% |
| !! | GAAGTGCAGCTGAGGTACTG+AGG | + | chr4.2:23337033-23337052 | MS.gene39556:intron | 55.0% |
| ATTGCCTGGTGGGAAAGCGG+AGG | + | chr4.2:23336508-23336527 | MS.gene39556:CDS | 60.0% | |
| CTGGTGGGAAAGCGGAGGAA+GGG | + | chr4.2:23336513-23336532 | MS.gene39556:CDS | 60.0% | |
| GGAAGGGGATAAGGACGACG+CGG | + | chr4.2:23336529-23336548 | MS.gene39556:CDS | 60.0% | |
| GGAGTCAGGAGGAGAGAGAG+TGG | + | chr4.2:23338150-23338169 | MS.gene39556:CDS | 60.0% | |
| TCAGAGTCGGTCCGCAGTCA+CGG | + | chr4.2:23337749-23337768 | MS.gene39556:intron | 60.0% | |
| TGGTGGGAAAGCGGAGGAAG+GGG | + | chr4.2:23336514-23336533 | MS.gene39556:CDS | 60.0% | |
| CAGAGTCGGTCCGCAGTCAC+GGG | + | chr4.2:23337750-23337769 | MS.gene39556:intron | 65.0% | |
| CCTGGTGGGAAAGCGGAGGA+AGG | + | chr4.2:23336512-23336531 | MS.gene39556:CDS | 65.0% | |
| CCTTCCTCCGCTTTCCCACC+AGG | - | chr4.2:23336515-23336534 | None:intergenic | 65.0% | |
| CGCGGCCACTGCAAAACGAG+AGG | + | chr4.2:23336547-23336566 | MS.gene39556:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 23335818 | 23338367 | 23335818 | ID=MS.gene39556 |
| chr4.2 | mRNA | 23335818 | 23338367 | 23335818 | ID=MS.gene39556.t1;Parent=MS.gene39556 |
| chr4.2 | exon | 23335818 | 23336175 | 23335818 | ID=MS.gene39556.t1.exon1;Parent=MS.gene39556.t1 |
| chr4.2 | CDS | 23335818 | 23336175 | 23335818 | ID=cds.MS.gene39556.t1;Parent=MS.gene39556.t1 |
| chr4.2 | exon | 23336498 | 23336640 | 23336498 | ID=MS.gene39556.t1.exon2;Parent=MS.gene39556.t1 |
| chr4.2 | CDS | 23336498 | 23336640 | 23336498 | ID=cds.MS.gene39556.t1;Parent=MS.gene39556.t1 |
| chr4.2 | exon | 23337933 | 23338052 | 23337933 | ID=MS.gene39556.t1.exon3;Parent=MS.gene39556.t1 |
| chr4.2 | CDS | 23337933 | 23338052 | 23337933 | ID=cds.MS.gene39556.t1;Parent=MS.gene39556.t1 |
| chr4.2 | exon | 23338140 | 23338367 | 23338140 | ID=MS.gene39556.t1.exon4;Parent=MS.gene39556.t1 |
| chr4.2 | CDS | 23338140 | 23338367 | 23338140 | ID=cds.MS.gene39556.t1;Parent=MS.gene39556.t1 |
| Gene Sequence |
| Protein sequence |
