AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060932


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060932.t1 MTR_1g012840 94.091 440 12 1 1 440 283 708 0.0 859
MS.gene060932.t1 MTR_2g451540 54.054 444 170 9 4 438 305 723 1.48e-154 455
MS.gene060932.t1 MTR_4g132780 38.427 445 201 6 2 376 298 739 1.54e-93 298
MS.gene060932.t1 MTR_2g025130 35.782 422 197 9 1 398 88 459 3.50e-78 250
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060932.t1 AT2G25290 61.607 448 149 4 3 439 304 739 0.0 558
MS.gene060932.t1 AT2G25290 61.607 448 149 4 3 439 304 739 0.0 558
MS.gene060932.t1 AT2G25290 61.607 448 149 4 3 439 304 739 0.0 558
MS.gene060932.t1 AT2G25290 61.607 448 149 4 3 439 304 739 0.0 558
MS.gene060932.t1 AT4G32070 60.746 456 144 8 1 439 339 776 0.0 548
MS.gene060932.t1 AT4G32070 60.746 456 144 8 1 439 339 776 0.0 548
MS.gene060932.t1 AT1G62390 40.749 427 204 5 2 379 313 739 9.50e-99 312
MS.gene060932.t1 AT5G20360 36.156 437 256 7 4 436 294 711 1.01e-85 277
MS.gene060932.t1 AT5G20360 36.156 437 256 7 4 436 294 711 1.01e-85 277
MS.gene060932.t1 AT5G20360 36.156 437 256 7 4 436 324 741 1.42e-85 277
MS.gene060932.t1 AT5G20360 36.156 437 256 7 4 436 324 741 1.42e-85 277
MS.gene060932.t1 AT5G20360 36.156 437 256 7 4 436 374 791 3.53e-85 277
MS.gene060932.t1 AT5G20360 36.156 437 256 7 4 436 384 801 4.10e-85 277
MS.gene060932.t1 AT5G20360 36.156 437 256 7 4 436 384 801 4.10e-85 277

Find 127 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTTGGCTTTGTTTAAT+TGG 0.077180 1.2:+8791587 MS.gene060932:CDS
TGCTTTGGCTTTGTTTAATT+GGG 0.159575 1.2:+8791588 MS.gene060932:CDS
TAATGCACAGTTAGAGAAAA+TGG 0.163980 1.2:+8791990 MS.gene060932:CDS
GGATAGGTATCCGGGGTTAA+AGG 0.285842 1.2:+8791147 MS.gene060932:CDS
ACAATAAGGTGCCCCATAAA+AGG 0.298701 1.2:-8792089 None:intergenic
GCAGAGGACAGCATGGAAAA+AGG 0.303320 1.2:+8791904 MS.gene060932:CDS
GTATATTACGCAGGTGGATT+TGG 0.326290 1.2:+8791276 MS.gene060932:CDS
GTTTGATTCTGATTCGTATC+TGG 0.333235 1.2:+8791453 MS.gene060932:CDS
ATAAGGGTGTTGGGGCTAAT+AGG 0.333240 1.2:+8791371 MS.gene060932:CDS
TACGCAGGTGGATTTGGATA+TGG 0.341945 1.2:+8791282 MS.gene060932:CDS
GTGAGGTGAGAGGGGAGAAT+GGG 0.343540 1.2:+8791335 MS.gene060932:CDS
GGGGAATGTTCACTTGTCTA+AGG 0.350249 1.2:+8791609 MS.gene060932:CDS
TAAGGATAGGGAAGGTGATT+TGG 0.357323 1.2:+8791186 MS.gene060932:CDS
GTTTCAAGAGATGGCTGCTT+TGG 0.361028 1.2:+8791573 MS.gene060932:CDS
TACGAGGGTCTCCTAGCTCT+TGG 0.363815 1.2:+8791775 MS.gene060932:CDS
GGGTGTTCTTGTGAAGTATA+AGG 0.372992 1.2:+8791168 MS.gene060932:CDS
ACCAACATGGGAGGAATGTT+TGG 0.374580 1.2:+8792146 MS.gene060932:CDS
GGCTGTTTAAGAACCATGTT+GGG 0.393596 1.2:+8791431 MS.gene060932:CDS
ATGGGCTACGAAGGAGTATA+AGG 0.401726 1.2:+8791705 MS.gene060932:CDS
GAGAAGGAGATAAGGGTGTT+GGG 0.411879 1.2:+8791362 MS.gene060932:CDS
TGAGTAGTGGTGAGGTGAGA+GGG 0.413021 1.2:+8791326 MS.gene060932:CDS
AACAGAACGCTCATACAATA+AGG 0.415328 1.2:-8792103 None:intergenic
GGTGAGGTGAGAGGGGAGAA+TGG 0.419918 1.2:+8791334 MS.gene060932:CDS
GTGAGAGGGGAGAATGGGGT+TGG 0.422494 1.2:+8791340 MS.gene060932:CDS
ATTGAGGAACAGCGTTTGAA+TGG 0.424825 1.2:+8791946 MS.gene060932:CDS
GGGGAGAATGGGGTTGGAGA+AGG 0.425637 1.2:+8791346 MS.gene060932:CDS
AGCTGCAGAACCTCCTCAAA+AGG 0.429826 1.2:-8791871 None:intergenic
TGTGATAAGGGATAGGTATC+CGG 0.440872 1.2:+8791138 MS.gene060932:CDS
AAAATTGTTCCAGGATGTAA+TGG 0.443210 1.2:-8792478 None:intergenic
CTCGACCCGTCTTCCTGAAA+AGG 0.446613 1.2:-8791646 None:intergenic
ATCTGGATATTCATGAGGTT+GGG 0.451158 1.2:+8791470 MS.gene060932:CDS
GGTTGGGATGAAGATATATT+CGG 0.451414 1.2:+8791486 MS.gene060932:CDS
TGGGGTTGGAGAAGGAGATA+AGG 0.452188 1.2:+8791354 MS.gene060932:CDS
GTGATAAGGGATAGGTATCC+GGG 0.453408 1.2:+8791139 MS.gene060932:CDS
AACAATAAGAATATCGAAGT+TGG 0.461398 1.2:+8791847 MS.gene060932:CDS
ACGAGGGTCTCCTAGCTCTT+GGG 0.466544 1.2:+8791776 MS.gene060932:CDS
GCTGAGGGTTGTCATGTGCT+TGG 0.466822 1.2:+8791241 MS.gene060932:CDS
GCTTTGGCTTTGTTTAATTG+GGG 0.471043 1.2:+8791589 MS.gene060932:CDS
TATCTGGATATTCATGAGGT+TGG 0.472474 1.2:+8791469 MS.gene060932:CDS
GTTGGTGAGAGATGTGATAA+GGG 0.473972 1.2:+8791126 MS.gene060932:CDS
TTCTGAAGAAGCTGAAGACC+AGG 0.474811 1.2:+8792041 MS.gene060932:CDS
GTCATGTGCTTGGTTCGATC+CGG 0.477175 1.2:+8791251 MS.gene060932:CDS
GATAGGTATCCGGGGTTAAA+GGG 0.478058 1.2:+8791148 MS.gene060932:CDS
AACCCTGTAATCATGAAAAG+TGG 0.485858 1.2:-8792347 None:intergenic
GGGGTTGGAGAAGGAGATAA+GGG 0.485908 1.2:+8791355 MS.gene060932:CDS
AATGCACAGTTAGAGAAAAT+GGG 0.486916 1.2:+8791991 MS.gene060932:CDS
GGAGAAGGAGATAAGGGTGT+TGG 0.487702 1.2:+8791361 MS.gene060932:CDS
TTGAGCAAGCAAAGCTATGC+TGG 0.490157 1.2:+8791809 MS.gene060932:CDS
CCACCTGCGTAATATACAAC+CGG 0.493909 1.2:-8791270 None:intergenic
GAGTAGTGGTGAGGTGAGAG+GGG 0.494532 1.2:+8791327 MS.gene060932:CDS
ATGTTAAAGCTGGATATGAA+TGG 0.495987 1.2:+8791686 MS.gene060932:CDS
GTATCCTCATCTTTGAAGCC+TGG 0.498183 1.2:-8792059 None:intergenic
AGTTGGTGAGAGATGTGATA+AGG 0.498390 1.2:+8791125 MS.gene060932:CDS
TCCAGGATGTAATGGAGTCT+TGG 0.500662 1.2:-8792470 None:intergenic
TTCTGAGTTGAGGTTAGCTG+AGG 0.503420 1.2:+8791225 MS.gene060932:CDS
TGAAACAGCAATGGAAGGTA+CGG 0.505657 1.2:+8792248 MS.gene060932:CDS
CTTTGGCTTTGTTTAATTGG+GGG 0.508071 1.2:+8791590 MS.gene060932:CDS
ATGAGTAGTGGTGAGGTGAG+AGG 0.509195 1.2:+8791325 MS.gene060932:CDS
GTTGATGTGGGAGGAGATTG+AGG 0.511356 1.2:+8791930 MS.gene060932:CDS
TGTTAAAGCTGGATATGAAT+GGG 0.512823 1.2:+8791687 MS.gene060932:CDS
GAAGATATATTCGGAGGCGA+TGG 0.514826 1.2:+8791495 MS.gene060932:CDS
TCTGTTGTGGAATTTAAGCT+AGG 0.515915 1.2:+8792120 MS.gene060932:CDS
GACTCGAACCATTGTTTCGT+CGG 0.516704 1.2:+8792441 MS.gene060932:CDS
AATGTCAGTTGTAGAAGCTC+CGG 0.523785 1.2:-8792196 None:intergenic
AGGCTGTTTAAGAACCATGT+TGG 0.526266 1.2:+8791430 MS.gene060932:CDS
AATGGTTCGAGTCGGAAAGT+TGG 0.527329 1.2:-8792431 None:intergenic
TCTCTCGAGCATGTTAAAGC+TGG 0.529882 1.2:+8791676 MS.gene060932:CDS
TGCGGATAAGTTTCAAGAGA+TGG 0.533330 1.2:+8791564 MS.gene060932:CDS
GTTGAAAAGTTTGAACTAGC+CGG 0.537285 1.2:+8792177 MS.gene060932:CDS
AGGAGACCCTCGTAGAAGTC+CGG 0.539637 1.2:-8791766 None:intergenic
TGAGAGATGTGATAAGGGAT+AGG 0.541480 1.2:+8791131 MS.gene060932:CDS
GCATGGAATGAGATGTATGA+TGG 0.545970 1.2:+8792392 MS.gene060932:CDS
TTGCTGTTTCATTAGAACAA+TGG 0.546528 1.2:-8792236 None:intergenic
AGAATCTGTGAAAATCAAAC+CGG 0.549691 1.2:+8791747 MS.gene060932:CDS
TCTGAGTTGAGGTTAGCTGA+GGG 0.552191 1.2:+8791226 MS.gene060932:CDS
GATATATTCGGAGGCGATGG+AGG 0.553793 1.2:+8791498 MS.gene060932:CDS
GGATGATTACTGTGGAGGAA+TGG 0.555855 1.2:+8791392 MS.gene060932:CDS
TTCTTGTGAAGTATAAGGAT+AGG 0.556963 1.2:+8791173 MS.gene060932:CDS
TCGATGACATAGTGCAAGCA+TGG 0.557013 1.2:+8792375 MS.gene060932:CDS
GCTGCAGAACCTCCTCAAAA+GGG 0.561685 1.2:-8791870 None:intergenic
ACAAGAACACCCTTTAACCC+CGG 0.566730 1.2:-8791157 None:intergenic
TGAGGTGAGAGGGGAGAATG+GGG 0.567723 1.2:+8791336 MS.gene060932:CDS
TCTTGTGAAGTATAAGGATA+GGG 0.568474 1.2:+8791174 MS.gene060932:CDS
GGAACACGCCGACGAAACAA+TGG 0.570618 1.2:-8792449 None:intergenic
AACATGGGAGGAATGTTTGG+AGG 0.573058 1.2:+8792149 MS.gene060932:CDS
ACTGTTGATACCCAAGAGCT+AGG 0.576141 1.2:-8791786 None:intergenic
TCCAAGACTCCATTACATCC+TGG 0.582606 1.2:+8792469 MS.gene060932:CDS
GAAACAGCAATGGAAGGTAC+GGG 0.582668 1.2:+8792249 MS.gene060932:CDS
TTACTACTACTTCTGAGTTG+AGG 0.582702 1.2:+8791215 MS.gene060932:CDS
GAGGATTCAGTGACGAATGA+TGG 0.587808 1.2:+8791517 MS.gene060932:CDS
AATGGCTTGTTCAGTTTGCG+AGG 0.590314 1.2:+8791410 MS.gene060932:CDS
TCCAAACATTCCTCCCATGT+TGG 0.593550 1.2:-8792147 None:intergenic
TTAGAGAAAATGGGTTTGCA+CGG 0.595862 1.2:+8792000 MS.gene060932:CDS
AGAAGGAGATAAGGGTGTTG+GGG 0.600333 1.2:+8791363 MS.gene060932:CDS
TAATAGGATGATTACTGTGG+AGG 0.608454 1.2:+8791387 MS.gene060932:CDS
TGGATATGAATGGGCTACGA+AGG 0.610634 1.2:+8791696 MS.gene060932:CDS
TAACAAGGCAGAGGACAGCA+TGG 0.611758 1.2:+8791897 MS.gene060932:CDS
GGTGAATTGTAGTATGAAGT+TGG 0.612990 1.2:+8791108 None:intergenic
ATTGTATGAGCGTTCTGTTG+TGG 0.617025 1.2:+8792107 MS.gene060932:CDS
GGTTCTGCAGCTCTATAACA+AGG 0.619781 1.2:+8791882 MS.gene060932:CDS
AAAAGGGATGTTGATGTGGG+AGG 0.621444 1.2:+8791921 MS.gene060932:CDS
ATCAAACCGGACTTCTACGA+GGG 0.621754 1.2:+8791760 MS.gene060932:CDS
TTGTTCTAATGAAACAGCAA+TGG 0.622294 1.2:+8792239 MS.gene060932:CDS
CCGGTTGTATATTACGCAGG+TGG 0.623338 1.2:+8791270 MS.gene060932:CDS
TTCGTATCTGGATATTCATG+AGG 0.624473 1.2:+8791465 MS.gene060932:CDS
TCTAATGAAACAGCAATGGA+AGG 0.625596 1.2:+8792243 MS.gene060932:CDS
AATCAGAATCAAACCCAACA+TGG 0.625835 1.2:-8791444 None:intergenic
GTGAAGTATAAGGATAGGGA+AGG 0.628310 1.2:+8791178 MS.gene060932:CDS
TTAAGCTAGGACTACCAACA+TGG 0.632474 1.2:+8792133 MS.gene060932:CDS
GCAGCTCTATAACAAGGCAG+AGG 0.632813 1.2:+8791888 MS.gene060932:CDS
GATCCGGTTGTATATTACGC+AGG 0.635696 1.2:+8791267 MS.gene060932:CDS
GACGAAACAATGGTTCGAGT+CGG 0.643395 1.2:-8792439 None:intergenic
AGAGCTGTTTGATATTGCTG+CGG 0.643756 1.2:+8791546 MS.gene060932:CDS
AAGACCAGGCTTCAAAGATG+AGG 0.650447 1.2:+8792055 MS.gene060932:CDS
GGAGCTTCTACAACTGACAT+TGG 0.653645 1.2:+8792198 MS.gene060932:CDS
ATGTTCACTTGTCTAAGGCG+AGG 0.655166 1.2:+8791614 MS.gene060932:CDS
CATGGAATGAGATGTATGAT+GGG 0.662583 1.2:+8792393 MS.gene060932:CDS
TATGATGAAAAGATGAGTAG+TGG 0.669294 1.2:+8791313 MS.gene060932:CDS
TGATAAGGGATAGGTATCCG+GGG 0.671748 1.2:+8791140 MS.gene060932:CDS
TAAGCTAGGACTACCAACAT+GGG 0.675321 1.2:+8792134 MS.gene060932:CDS
TTCACTTGTCTAAGGCGAGG+AGG 0.676418 1.2:+8791617 MS.gene060932:CDS
TGGGATGAAGATATATTCGG+AGG 0.690271 1.2:+8791489 MS.gene060932:CDS
TGAAAAGATGAGTAGTGGTG+AGG 0.697497 1.2:+8791318 MS.gene060932:CDS
GGCTAATAGGATGATTACTG+TGG 0.700839 1.2:+8791384 MS.gene060932:CDS
AATCAAACCGGACTTCTACG+AGG 0.701391 1.2:+8791759 MS.gene060932:CDS
GCTAGGACTACCAACATGGG+AGG 0.703040 1.2:+8792137 MS.gene060932:CDS
GGAATGAGATGTATGATGGG+TGG 0.713527 1.2:+8792396 MS.gene060932:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATATTTGAAACATAAA+AGG - chr1.2:8792314-8792333 None:intergenic 10.0%
!!! TTTATGTTTCAAATATTTTA+GGG + chr1.2:8792314-8792333 MS.gene060932:intron 10.0%
!!! TTTTATGTTTCAAATATTTT+AGG + chr1.2:8792313-8792332 MS.gene060932:intron 10.0%
! AACAATAAGAATATCGAAGT+TGG + chr1.2:8791847-8791866 MS.gene060932:CDS 25.0%
!! ATACAGATATACCTTTTATG+GGG + chr1.2:8792078-8792097 MS.gene060932:CDS 25.0%
!! GATACAGATATACCTTTTAT+GGG + chr1.2:8792077-8792096 MS.gene060932:CDS 25.0%
AAAATTGTTCCAGGATGTAA+TGG - chr1.2:8792481-8792500 None:intergenic 30.0%
AATGCACAGTTAGAGAAAAT+GGG + chr1.2:8791991-8792010 MS.gene060932:CDS 30.0%
AGAATCTGTGAAAATCAAAC+CGG + chr1.2:8791747-8791766 MS.gene060932:CDS 30.0%
ATGTTAAAGCTGGATATGAA+TGG + chr1.2:8791686-8791705 MS.gene060932:CDS 30.0%
TAATGCACAGTTAGAGAAAA+TGG + chr1.2:8791990-8792009 MS.gene060932:CDS 30.0%
TATGATGAAAAGATGAGTAG+TGG + chr1.2:8791313-8791332 MS.gene060932:CDS 30.0%
TCTTGTGAAGTATAAGGATA+GGG + chr1.2:8791174-8791193 MS.gene060932:CDS 30.0%
TGTTAAAGCTGGATATGAAT+GGG + chr1.2:8791687-8791706 MS.gene060932:CDS 30.0%
TTCTTGTGAAGTATAAGGAT+AGG + chr1.2:8791173-8791192 MS.gene060932:CDS 30.0%
TTGTTCTAATGAAACAGCAA+TGG + chr1.2:8792239-8792258 MS.gene060932:CDS 30.0%
! CTCATCTTTTCATCATAACA+CGG - chr1.2:8791310-8791329 None:intergenic 30.0%
! GGATACAGATATACCTTTTA+TGG + chr1.2:8792076-8792095 MS.gene060932:CDS 30.0%
!! AAACCACTTTTCATGATTAC+AGG + chr1.2:8792344-8792363 MS.gene060932:CDS 30.0%
!! AACCACTTTTCATGATTACA+GGG + chr1.2:8792345-8792364 MS.gene060932:CDS 30.0%
!! TGCTTTGGCTTTGTTTAATT+GGG + chr1.2:8791588-8791607 MS.gene060932:CDS 30.0%
!! TTGCTGTTTCATTAGAACAA+TGG - chr1.2:8792239-8792258 None:intergenic 30.0%
AACAGAACGCTCATACAATA+AGG - chr1.2:8792106-8792125 None:intergenic 35.0%
AACCCTGTAATCATGAAAAG+TGG - chr1.2:8792350-8792369 None:intergenic 35.0%
AATCAGAATCAAACCCAACA+TGG - chr1.2:8791447-8791466 None:intergenic 35.0%
ATCTGGATATTCATGAGGTT+GGG + chr1.2:8791470-8791489 MS.gene060932:CDS 35.0%
CATGGAATGAGATGTATGAT+GGG + chr1.2:8792393-8792412 MS.gene060932:CDS 35.0%
GGTTGGGATGAAGATATATT+CGG + chr1.2:8791486-8791505 MS.gene060932:CDS 35.0%
GTTGAAAAGTTTGAACTAGC+CGG + chr1.2:8792177-8792196 MS.gene060932:CDS 35.0%
TAATAGGATGATTACTGTGG+AGG + chr1.2:8791387-8791406 MS.gene060932:CDS 35.0%
TATCTGGATATTCATGAGGT+TGG + chr1.2:8791469-8791488 MS.gene060932:CDS 35.0%
TCTAATGAAACAGCAATGGA+AGG + chr1.2:8792243-8792262 MS.gene060932:CDS 35.0%
TCTGTTGTGGAATTTAAGCT+AGG + chr1.2:8792120-8792139 MS.gene060932:CDS 35.0%
TTACTACTACTTCTGAGTTG+AGG + chr1.2:8791215-8791234 MS.gene060932:CDS 35.0%
TTCGTATCTGGATATTCATG+AGG + chr1.2:8791465-8791484 MS.gene060932:CDS 35.0%
! GTTTGATTCTGATTCGTATC+TGG + chr1.2:8791453-8791472 MS.gene060932:CDS 35.0%
! TTAGAGAAAATGGGTTTGCA+CGG + chr1.2:8792000-8792019 MS.gene060932:CDS 35.0%
!! CTGCTTTGGCTTTGTTTAAT+TGG + chr1.2:8791587-8791606 MS.gene060932:CDS 35.0%
!! CTTTGGCTTTGTTTAATTGG+GGG + chr1.2:8791590-8791609 MS.gene060932:CDS 35.0%
!! GCTTTGGCTTTGTTTAATTG+GGG + chr1.2:8791589-8791608 MS.gene060932:CDS 35.0%
AATGTCAGTTGTAGAAGCTC+CGG - chr1.2:8792199-8792218 None:intergenic 40.0%
AGAGCTGTTTGATATTGCTG+CGG + chr1.2:8791546-8791565 MS.gene060932:CDS 40.0%
AGGCTGTTTAAGAACCATGT+TGG + chr1.2:8791430-8791449 MS.gene060932:CDS 40.0%
ATTGAGGAACAGCGTTTGAA+TGG + chr1.2:8791946-8791965 MS.gene060932:CDS 40.0%
ATTGTATGAGCGTTCTGTTG+TGG + chr1.2:8792107-8792126 MS.gene060932:CDS 40.0%
GCATGGAATGAGATGTATGA+TGG + chr1.2:8792392-8792411 MS.gene060932:CDS 40.0%
GGAAAAAGGGATGTTGATGT+GGG + chr1.2:8791918-8791937 MS.gene060932:CDS 40.0%
GGCTAATAGGATGATTACTG+TGG + chr1.2:8791384-8791403 MS.gene060932:CDS 40.0%
GGCTGTTTAAGAACCATGTT+GGG + chr1.2:8791431-8791450 MS.gene060932:CDS 40.0%
GGGTGTTCTTGTGAAGTATA+AGG + chr1.2:8791168-8791187 MS.gene060932:CDS 40.0%
GTGAAGTATAAGGATAGGGA+AGG + chr1.2:8791178-8791197 MS.gene060932:CDS 40.0%
TAAGCTAGGACTACCAACAT+GGG + chr1.2:8792134-8792153 MS.gene060932:CDS 40.0%
TAAGGATAGGGAAGGTGATT+TGG + chr1.2:8791186-8791205 MS.gene060932:CDS 40.0%
TGAAAAGATGAGTAGTGGTG+AGG + chr1.2:8791318-8791337 MS.gene060932:CDS 40.0%
TGAAACAGCAATGGAAGGTA+CGG + chr1.2:8792248-8792267 MS.gene060932:CDS 40.0%
TGAGAGATGTGATAAGGGAT+AGG + chr1.2:8791131-8791150 MS.gene060932:CDS 40.0%
TGCGGATAAGTTTCAAGAGA+TGG + chr1.2:8791564-8791583 MS.gene060932:CDS 40.0%
TGGAAAAAGGGATGTTGATG+TGG + chr1.2:8791917-8791936 MS.gene060932:CDS 40.0%
TGGGATGAAGATATATTCGG+AGG + chr1.2:8791489-8791508 MS.gene060932:CDS 40.0%
TGTGATAAGGGATAGGTATC+CGG + chr1.2:8791138-8791157 MS.gene060932:CDS 40.0%
TTAAGCTAGGACTACCAACA+TGG + chr1.2:8792133-8792152 MS.gene060932:CDS 40.0%
! ACAATAAGGTGCCCCATAAA+AGG - chr1.2:8792092-8792111 None:intergenic 40.0%
! GTATATTACGCAGGTGGATT+TGG + chr1.2:8791276-8791295 MS.gene060932:CDS 40.0%
! GTTGGTGAGAGATGTGATAA+GGG + chr1.2:8791126-8791145 MS.gene060932:CDS 40.0%
!! AGTTGGTGAGAGATGTGATA+AGG + chr1.2:8791125-8791144 MS.gene060932:CDS 40.0%
AAAAGGGATGTTGATGTGGG+AGG + chr1.2:8791921-8791940 MS.gene060932:CDS 45.0%
AACATGGGAGGAATGTTTGG+AGG + chr1.2:8792149-8792168 MS.gene060932:CDS 45.0%
AAGACCAGGCTTCAAAGATG+AGG + chr1.2:8792055-8792074 MS.gene060932:CDS 45.0%
AATCAAACCGGACTTCTACG+AGG + chr1.2:8791759-8791778 MS.gene060932:CDS 45.0%
AATGGTTCGAGTCGGAAAGT+TGG - chr1.2:8792434-8792453 None:intergenic 45.0%
ACAAGAACACCCTTTAACCC+CGG - chr1.2:8791160-8791179 None:intergenic 45.0%
ACCAACATGGGAGGAATGTT+TGG + chr1.2:8792146-8792165 MS.gene060932:CDS 45.0%
ACTGTTGATACCCAAGAGCT+AGG - chr1.2:8791789-8791808 None:intergenic 45.0%
ATCAAACCGGACTTCTACGA+GGG + chr1.2:8791760-8791779 MS.gene060932:CDS 45.0%
CAGAGGACAGCATGGAAAAA+GGG + chr1.2:8791905-8791924 MS.gene060932:CDS 45.0%
CCACCTGCGTAATATACAAC+CGG - chr1.2:8791273-8791292 None:intergenic 45.0%
GAAGATATATTCGGAGGCGA+TGG + chr1.2:8791495-8791514 MS.gene060932:CDS 45.0%
GACGAAACAATGGTTCGAGT+CGG - chr1.2:8792442-8792461 None:intergenic 45.0%
GACTCGAACCATTGTTTCGT+CGG + chr1.2:8792441-8792460 MS.gene060932:CDS 45.0%
GAGGATTCAGTGACGAATGA+TGG + chr1.2:8791517-8791536 MS.gene060932:CDS 45.0%
GATAGGTATCCGGGGTTAAA+GGG + chr1.2:8791148-8791167 MS.gene060932:CDS 45.0%
GATCCGGTTGTATATTACGC+AGG + chr1.2:8791267-8791286 MS.gene060932:CDS 45.0%
GGAGCTTCTACAACTGACAT+TGG + chr1.2:8792198-8792217 MS.gene060932:CDS 45.0%
GGATGATTACTGTGGAGGAA+TGG + chr1.2:8791392-8791411 MS.gene060932:CDS 45.0%
GGGGAATGTTCACTTGTCTA+AGG + chr1.2:8791609-8791628 MS.gene060932:CDS 45.0%
GGTTCTGCAGCTCTATAACA+AGG + chr1.2:8791882-8791901 MS.gene060932:CDS 45.0%
GTGATAAGGGATAGGTATCC+GGG + chr1.2:8791139-8791158 MS.gene060932:CDS 45.0%
GTTTCAAGAGATGGCTGCTT+TGG + chr1.2:8791573-8791592 MS.gene060932:CDS 45.0%
TCCAAACATTCCTCCCATGT+TGG - chr1.2:8792150-8792169 None:intergenic 45.0%
TCCAAGACTCCATTACATCC+TGG + chr1.2:8792469-8792488 MS.gene060932:CDS 45.0%
TCGATGACATAGTGCAAGCA+TGG + chr1.2:8792375-8792394 MS.gene060932:CDS 45.0%
TCTCTCGAGCATGTTAAAGC+TGG + chr1.2:8791676-8791695 MS.gene060932:CDS 45.0%
TGATAAGGGATAGGTATCCG+GGG + chr1.2:8791140-8791159 MS.gene060932:CDS 45.0%
TTGAGCAAGCAAAGCTATGC+TGG + chr1.2:8791809-8791828 MS.gene060932:CDS 45.0%
! ATGGGCTACGAAGGAGTATA+AGG + chr1.2:8791705-8791724 MS.gene060932:CDS 45.0%
! ATGTTCACTTGTCTAAGGCG+AGG + chr1.2:8791614-8791633 MS.gene060932:CDS 45.0%
! GAAACAGCAATGGAAGGTAC+GGG + chr1.2:8792249-8792268 MS.gene060932:CDS 45.0%
! GGAATGAGATGTATGATGGG+TGG + chr1.2:8792396-8792415 MS.gene060932:CDS 45.0%
! TACGCAGGTGGATTTGGATA+TGG + chr1.2:8791282-8791301 MS.gene060932:CDS 45.0%
! TATCGAAGTTGGCCCTTTTG+AGG + chr1.2:8791858-8791877 MS.gene060932:CDS 45.0%
! TCCAGGATGTAATGGAGTCT+TGG - chr1.2:8792473-8792492 None:intergenic 45.0%
! TCTGAGTTGAGGTTAGCTGA+GGG + chr1.2:8791226-8791245 MS.gene060932:CDS 45.0%
! TTCTGAAGAAGCTGAAGACC+AGG + chr1.2:8792041-8792060 MS.gene060932:CDS 45.0%
! TTCTGAGTTGAGGTTAGCTG+AGG + chr1.2:8791225-8791244 MS.gene060932:CDS 45.0%
!! AATGGCTTGTTCAGTTTGCG+AGG + chr1.2:8791410-8791429 MS.gene060932:CDS 45.0%
!! AGAAGGAGATAAGGGTGTTG+GGG + chr1.2:8791363-8791382 MS.gene060932:CDS 45.0%
!! ATAAGGGTGTTGGGGCTAAT+AGG + chr1.2:8791371-8791390 MS.gene060932:CDS 45.0%
!! GAGAAGGAGATAAGGGTGTT+GGG + chr1.2:8791362-8791381 MS.gene060932:CDS 45.0%
!! GTATCCTCATCTTTGAAGCC+TGG - chr1.2:8792062-8792081 None:intergenic 45.0%
!! TGGATATGAATGGGCTACGA+AGG + chr1.2:8791696-8791715 MS.gene060932:CDS 45.0%
AGCTGCAGAACCTCCTCAAA+AGG - chr1.2:8791874-8791893 None:intergenic 50.0%
ATGAGTAGTGGTGAGGTGAG+AGG + chr1.2:8791325-8791344 MS.gene060932:CDS 50.0%
CCGGTTGTATATTACGCAGG+TGG + chr1.2:8791270-8791289 MS.gene060932:CDS 50.0%
GATATATTCGGAGGCGATGG+AGG + chr1.2:8791498-8791517 MS.gene060932:CDS 50.0%
GCAGAGGACAGCATGGAAAA+AGG + chr1.2:8791904-8791923 MS.gene060932:CDS 50.0%
GCAGCTCTATAACAAGGCAG+AGG + chr1.2:8791888-8791907 MS.gene060932:CDS 50.0%
GCTGCAGAACCTCCTCAAAA+GGG - chr1.2:8791873-8791892 None:intergenic 50.0%
GGATAGGTATCCGGGGTTAA+AGG + chr1.2:8791147-8791166 MS.gene060932:CDS 50.0%
GGGGTTGGAGAAGGAGATAA+GGG + chr1.2:8791355-8791374 MS.gene060932:CDS 50.0%
GTTGATGTGGGAGGAGATTG+AGG + chr1.2:8791930-8791949 MS.gene060932:CDS 50.0%
TAACAAGGCAGAGGACAGCA+TGG + chr1.2:8791897-8791916 MS.gene060932:CDS 50.0%
TGAGTAGTGGTGAGGTGAGA+GGG + chr1.2:8791326-8791345 MS.gene060932:CDS 50.0%
TGGGGTTGGAGAAGGAGATA+AGG + chr1.2:8791354-8791373 MS.gene060932:CDS 50.0%
! GGAGAAGGAGATAAGGGTGT+TGG + chr1.2:8791361-8791380 MS.gene060932:CDS 50.0%
! GGGTTTGCACGGTCTTTTCA+GGG + chr1.2:8792011-8792030 MS.gene060932:CDS 50.0%
! GTCATGTGCTTGGTTCGATC+CGG + chr1.2:8791251-8791270 MS.gene060932:CDS 50.0%
! TGGGTTTGCACGGTCTTTTC+AGG + chr1.2:8792010-8792029 MS.gene060932:CDS 50.0%
! TTCACTTGTCTAAGGCGAGG+AGG + chr1.2:8791617-8791636 MS.gene060932:CDS 50.0%
!! CGAGTGCCTTTTCAGGAAGA+CGG + chr1.2:8791640-8791659 MS.gene060932:CDS 50.0%
!! GAGTGCCTTTTCAGGAAGAC+GGG + chr1.2:8791641-8791660 MS.gene060932:CDS 50.0%
AGGAGACCCTCGTAGAAGTC+CGG - chr1.2:8791769-8791788 None:intergenic 55.0%
CTCGACCCGTCTTCCTGAAA+AGG - chr1.2:8791649-8791668 None:intergenic 55.0%
GAGTAGTGGTGAGGTGAGAG+GGG + chr1.2:8791327-8791346 MS.gene060932:CDS 55.0%
GCTAGGACTACCAACATGGG+AGG + chr1.2:8792137-8792156 MS.gene060932:CDS 55.0%
GCTGAGGGTTGTCATGTGCT+TGG + chr1.2:8791241-8791260 MS.gene060932:CDS 55.0%
GGAACACGCCGACGAAACAA+TGG - chr1.2:8792452-8792471 None:intergenic 55.0%
GTGAGGTGAGAGGGGAGAAT+GGG + chr1.2:8791335-8791354 MS.gene060932:CDS 55.0%
TGAGGTGAGAGGGGAGAATG+GGG + chr1.2:8791336-8791355 MS.gene060932:CDS 55.0%
! ACGAGGGTCTCCTAGCTCTT+GGG + chr1.2:8791776-8791795 MS.gene060932:CDS 55.0%
! TACGAGGGTCTCCTAGCTCT+TGG + chr1.2:8791775-8791794 MS.gene060932:CDS 55.0%
!! CGAAGTTGGCCCTTTTGAGG+AGG + chr1.2:8791861-8791880 MS.gene060932:CDS 55.0%
GGGGAGAATGGGGTTGGAGA+AGG + chr1.2:8791346-8791365 MS.gene060932:CDS 60.0%
GGTGAGGTGAGAGGGGAGAA+TGG + chr1.2:8791334-8791353 MS.gene060932:CDS 60.0%
GTGAGAGGGGAGAATGGGGT+TGG + chr1.2:8791340-8791359 MS.gene060932:CDS 60.0%
! GAGGAGGCGAGTGCCTTTTC+AGG + chr1.2:8791633-8791652 MS.gene060932:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 8791121 8792502 8791121 ID=MS.gene060932
chr1.2 mRNA 8791121 8792502 8791121 ID=MS.gene060932.t1;Parent=MS.gene060932
chr1.2 exon 8791121 8792275 8791121 ID=MS.gene060932.t1.exon1;Parent=MS.gene060932.t1
chr1.2 CDS 8791121 8792275 8791121 ID=cds.MS.gene060932.t1;Parent=MS.gene060932.t1
chr1.2 exon 8792335 8792502 8792335 ID=MS.gene060932.t1.exon2;Parent=MS.gene060932.t1
chr1.2 CDS 8792335 8792502 8792335 ID=cds.MS.gene060932.t1;Parent=MS.gene060932.t1
Gene Sequence

>MS.gene060932

ATGAAGTTGGTGAGAGATGTGATAAGGGATAGGTATCCGGGGTTAAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAAGGTGATTTGGTTACTATTACTACTACTTCTGAGTTGAGGTTAGCTGAGGGTTGTCATGTGCTTGGTTCGATCCGGTTGTATATTACGCAGGTGGATTTGGATATGGAGCCGTGTTATGATGAAAAGATGAGTAGTGGTGAGGTGAGAGGGGAGAATGGGGTTGGAGAAGGAGATAAGGGTGTTGGGGCTAATAGGATGATTACTGTGGAGGAATGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAACCATGTTGGGTTTGATTCTGATTCGTATCTGGATATTCATGAGGTTGGGATGAAGATATATTCGGAGGCGATGGAGGATTCAGTGACGAATGATGGTGCTCAAGAGCTGTTTGATATTGCTGCGGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCACTTGTCTAAGGCGAGGAGGCGAGTGCCTTTTCAGGAAGACGGGTCGAGAGAAGCATCTCTCGAGCATGTTAAAGCTGGATATGAATGGGCTACGAAGGAGTATAAGGAAGCAGAAATGAGATACGAAGAATCTGTGAAAATCAAACCGGACTTCTACGAGGGTCTCCTAGCTCTTGGGTATCAACAGTTTGAGCAAGCAAAGCTATGCTGGTGTTATTTAATTGTAAACAATAAGAATATCGAAGTTGGCCCTTTTGAGGAGGTTCTGCAGCTCTATAACAAGGCAGAGGACAGCATGGAAAAAGGGATGTTGATGTGGGAGGAGATTGAGGAACAGCGTTTGAATGGACTCTCTAAGTTAGATAAATATAATGCACAGTTAGAGAAAATGGGTTTGCACGGTCTTTTCAGGGATGTTTCTTCTGAAGAAGCTGAAGACCAGGCTTCAAAGATGAGGATACAGATATACCTTTTATGGGGCACCTTATTGTATGAGCGTTCTGTTGTGGAATTTAAGCTAGGACTACCAACATGGGAGGAATGTTTGGAGGTTGCTGTTGAAAAGTTTGAACTAGCCGGAGCTTCTACAACTGACATTGGTGTCATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGTACGGGTTGCGTAAACATTATAGACTGTTGTGTATTTATCAGATACCTTTTATGTTTCAAATATTTTAGGGAACTAACAAACCACTTTTCATGATTACAGGGTTCAAAATCGATGACATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCAACTTTCCGACTCGAACCATTGTTTCGTCGGCGTGTTCCAAGACTCCATTACATCCTGGAACAATTTTAA

Protein sequence

>MS.gene060932.t1

MKLVRDVIRDRYPGLKGVLVKYKDREGDLVTITTTSELRLAEGCHVLGSIRLYITQVDLDMEPCYDEKMSSGEVRGENGVGEGDKGVGANRMITVEEWLVQFARLFKNHVGFDSDSYLDIHEVGMKIYSEAMEDSVTNDGAQELFDIAADKFQEMAALALFNWGNVHLSKARRRVPFQEDGSREASLEHVKAGYEWATKEYKEAEMRYEESVKIKPDFYEGLLALGYQQFEQAKLCWCYLIVNNKNIEVGPFEEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYNAQLEKMGLHGLFRDVSSEEAEDQASKMRIQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGTGCGTNKPLFMITGFKIDDIVQAWNEMYDGWQFDVPTFRLEPLFRRRVPRLHYILEQF