Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39785.t1 | XP_024639354.1 | 95.4 | 239 | 11 | 0 | 1 | 239 | 1 | 239 | 5.50E-126 | 460.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39785.t1 | Q9ZVE0 | 60.6 | 236 | 78 | 4 | 1 | 236 | 1 | 221 | 3.4e-76 | 286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39785.t1 | A0A396HVX4 | 95.4 | 239 | 11 | 0 | 1 | 239 | 1 | 239 | 3.9e-126 | 460.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050317 | MS.gene39785 | 0.819249 | 1.28E-52 | -1.69E-46 |
| MS.gene051756 | MS.gene39785 | 0.807602 | 4.67E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene39785 | 0.807989 | 3.86E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene39785 | 0.824202 | 9.17E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene39785 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene39785 | 0.808483 | 3.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39785.t1 | MTR_5g088337 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 1.57e-168 | 465 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39785.t1 | AT2G26970 | 60.593 | 236 | 78 | 4 | 1 | 236 | 1 | 221 | 2.49e-102 | 296 |
| MS.gene39785.t1 | AT2G26970 | 60.169 | 236 | 75 | 4 | 1 | 236 | 1 | 217 | 1.25e-101 | 294 |
Find 47 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAAATACATGCCAAAAT+TGG | 0.219729 | 5.4:+69468759 | MS.gene39785:intron |
| GAGAAGATCCCCGCCAATTT+TGG | 0.231562 | 5.4:-69468772 | None:intergenic |
| ATCCATATTTGTCTGATTAC+AGG | 0.249105 | 5.4:+69466532 | MS.gene39785:CDS |
| CAACCTCCTTCTCTTCCTTC+TGG | 0.262802 | 5.4:+69465313 | MS.gene39785:CDS |
| CGTTATCATTTCTTGACCTT+TGG | 0.318803 | 5.4:-69469204 | None:intergenic |
| GGAGATTGCTTGTATAATTA+CGG | 0.329627 | 5.4:+69466706 | MS.gene39785:CDS |
| TATTGAAGTGGATAGAATTC+TGG | 0.339978 | 5.4:+69466685 | MS.gene39785:CDS |
| ATTACAGGTTACCTCTTGTC+TGG | 0.356384 | 5.4:+69466547 | MS.gene39785:CDS |
| AATATATACCTCCACCGATT+TGG | 0.364407 | 5.4:-69466741 | None:intergenic |
| GAATTCGTTAAGAAACATAT+TGG | 0.379765 | 5.4:+69468466 | MS.gene39785:CDS |
| GTTTGATGTATGACCAAATC+AGG | 0.394324 | 5.4:-69467490 | None:intergenic |
| AGGAAGAGAAGGAGGTTGAA+TGG | 0.397608 | 5.4:-69465308 | None:intergenic |
| TGAAAGAGAAGCTGAAGAAC+AGG | 0.404389 | 5.4:+69467735 | MS.gene39785:CDS |
| AACCTGTAATCAGACAAATA+TGG | 0.412327 | 5.4:-69466534 | None:intergenic |
| TGCATTCGTTGGTATCCTAA+AGG | 0.453245 | 5.4:+69468832 | MS.gene39785:CDS |
| TCTCAGCTCTTTGCATTCGT+TGG | 0.454912 | 5.4:+69468821 | MS.gene39785:CDS |
| AAATACATGCCAAAATTGGC+GGG | 0.507770 | 5.4:+69468763 | MS.gene39785:CDS |
| GGATGGAAACTTAACCAAAT+CGG | 0.511103 | 5.4:+69466727 | MS.gene39785:CDS |
| GGCAGGAAATTCGATATATG+TGG | 0.518560 | 5.4:+69468510 | MS.gene39785:CDS |
| AGTGGTGGAGAGAAAGCTAA+TGG | 0.523074 | 5.4:+69466468 | MS.gene39785:CDS |
| GAAATACATGCCAAAATTGG+CGG | 0.525273 | 5.4:+69468762 | MS.gene39785:intron |
| TGTGGATTTACAATATATGA+AGG | 0.536829 | 5.4:+69468528 | MS.gene39785:CDS |
| TAAGGAGTGCCTTGACAGGA+TGG | 0.539187 | 5.4:+69467513 | MS.gene39785:CDS |
| AGGTACTTACAAACCTCTCT+TGG | 0.539546 | 5.4:+69468489 | MS.gene39785:CDS |
| TTTCTTGGTGCAGGTAGTGG+TGG | 0.540722 | 5.4:+69466453 | MS.gene39785:intron |
| AAACTAAGGAGTGCCTTGAC+AGG | 0.541640 | 5.4:+69467509 | MS.gene39785:CDS |
| ACCTCTTGTCTGGATTGACT+TGG | 0.542563 | 5.4:+69466557 | MS.gene39785:CDS |
| TTTGGTCATACATCAAACTA+AGG | 0.543284 | 5.4:+69467495 | MS.gene39785:CDS |
| GGCGGGGATCTTCTCTCATG+TGG | 0.543683 | 5.4:+69468780 | MS.gene39785:CDS |
| GCCTTGACAGGATGGGAGAA+TGG | 0.548650 | 5.4:+69467521 | MS.gene39785:CDS |
| ATTGCTTGTATAATTACGGA+TGG | 0.553379 | 5.4:+69466710 | MS.gene39785:CDS |
| AGCATACCAGAAGGAAGAGA+AGG | 0.556437 | 5.4:-69465319 | None:intergenic |
| ACTTACAAACCTCTCTTGGC+AGG | 0.564752 | 5.4:+69468493 | MS.gene39785:CDS |
| TGGATTGACTTGGAAATGAC+TGG | 0.570107 | 5.4:+69466567 | MS.gene39785:CDS |
| TTCGTTAAGAAACATATTGG+AGG | 0.577409 | 5.4:+69468469 | MS.gene39785:CDS |
| ATCGAATTTCCTGCCAAGAG+AGG | 0.584584 | 5.4:-69468502 | None:intergenic |
| AAACTTAACCAAATCGGTGG+AGG | 0.589283 | 5.4:+69466733 | MS.gene39785:CDS |
| TCCAAGTCAATCCAGACAAG+AGG | 0.594779 | 5.4:-69466558 | None:intergenic |
| AAAAGTCATCACGCTGCTAG+TGG | 0.595217 | 5.4:+69467547 | MS.gene39785:CDS |
| AAGGAGTGCCTTGACAGGAT+GGG | 0.595908 | 5.4:+69467514 | MS.gene39785:CDS |
| ACCATTCTCCCATCCTGTCA+AGG | 0.602681 | 5.4:-69467522 | None:intergenic |
| TGATATTAGAGAAAGTATTG+AGG | 0.606819 | 5.4:+69469149 | MS.gene39785:CDS |
| TGCAGGTTTGAATATTGAAG+TGG | 0.613241 | 5.4:+69466673 | MS.gene39785:intron |
| ATACCAGAAGGAAGAGAAGG+AGG | 0.632940 | 5.4:-69465316 | None:intergenic |
| TGGAAACTTAACCAAATCGG+TGG | 0.635295 | 5.4:+69466730 | MS.gene39785:CDS |
| TGAGGAACTCAAGTACTACA+AGG | 0.639860 | 5.4:+69469167 | MS.gene39785:CDS |
| AATACATGCCAAAATTGGCG+GGG | 0.644871 | 5.4:+69468764 | MS.gene39785:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATATTTGTATTTATTTTA+GGG | + | chr5.4:69467466-69467485 | MS.gene39785:intron | 10.0% |
| !!! | GTTTTTGAAATAAAAAATTT+AGG | + | chr5.4:69466018-69466037 | MS.gene39785:intron | 10.0% |
| !!! | TACATATTTGTATTTATTTT+AGG | + | chr5.4:69467465-69467484 | MS.gene39785:intron | 10.0% |
| !! | TCTACATATCAATTTATTTA+AGG | - | chr5.4:69467095-69467114 | None:intergenic | 15.0% |
| !!! | AAAAATTCCATTTTTTACTT+TGG | + | chr5.4:69465534-69465553 | MS.gene39785:intron | 15.0% |
| !!! | CACTTCTTTTTTTATTATTA+GGG | + | chr5.4:69465374-69465393 | MS.gene39785:intron | 15.0% |
| !!! | CTTACATTTCTATTTTAAAT+AGG | + | chr5.4:69467805-69467824 | MS.gene39785:intron | 15.0% |
| !!! | TCACTTCTTTTTTTATTATT+AGG | + | chr5.4:69465373-69465392 | MS.gene39785:intron | 15.0% |
| !! | AAAGGGATTTAATAATGTTA+AGG | - | chr5.4:69467624-69467643 | None:intergenic | 20.0% |
| !! | AAATTTGATAAAAATGACCA+AGG | + | chr5.4:69465921-69465940 | MS.gene39785:intron | 20.0% |
| !! | ACAAATACACTACTTTATTA+TGG | - | chr5.4:69468565-69468584 | None:intergenic | 20.0% |
| !! | AGATTTACCAAAGTAAAAAA+TGG | - | chr5.4:69465544-69465563 | None:intergenic | 20.0% |
| !! | ATTAAGTTCATAAAGAATAC+TGG | + | chr5.4:69467972-69467991 | MS.gene39785:intron | 20.0% |
| !! | CAAATCATATTATGAGATAA+TGG | + | chr5.4:69468368-69468387 | MS.gene39785:intron | 20.0% |
| !! | GTGATATTATGAAATTTATC+AGG | + | chr5.4:69467264-69467283 | MS.gene39785:intron | 20.0% |
| !! | TCTACATATCAATTTATTGA+AGG | - | chr5.4:69467031-69467050 | None:intergenic | 20.0% |
| !!! | AGTAAAAAACTGATTTAGTA+TGG | + | chr5.4:69467430-69467449 | MS.gene39785:intron | 20.0% |
| !!! | TAATTTGCATTTTGATTTGT+TGG | + | chr5.4:69467594-69467613 | MS.gene39785:intron | 20.0% |
| !!! | TATCTCTTATTGATGATTTT+AGG | - | chr5.4:69468215-69468234 | None:intergenic | 20.0% |
| !!! | TCCAAAAGTATATTTAATTC+TGG | - | chr5.4:69468976-69468995 | None:intergenic | 20.0% |
| !!! | TCCAGAATTAAATATACTTT+TGG | + | chr5.4:69468972-69468991 | MS.gene39785:intron | 20.0% |
| ! | AAATTATCGAATTGGAGAAT+AGG | + | chr5.4:69465996-69466015 | MS.gene39785:intron | 25.0% |
| ! | AAGTACCTTCAAAACAAAAA+AGG | + | chr5.4:69469112-69469131 | MS.gene39785:CDS | 25.0% |
| ! | AAGTAGTTAAATAGGTGATT+TGG | + | chr5.4:69466080-69466099 | MS.gene39785:intron | 25.0% |
| ! | ATCTCATTCAAAATATCTTG+AGG | - | chr5.4:69466824-69466843 | None:intergenic | 25.0% |
| ! | ATTGAATAACAGGGATAAAA+GGG | - | chr5.4:69465351-69465370 | None:intergenic | 25.0% |
| ! | CATTTCAACAAAGGAATAAT+AGG | - | chr5.4:69468677-69468696 | None:intergenic | 25.0% |
| ! | GAAGGATCATATAAGTTTAA+GGG | - | chr5.4:69467013-69467032 | None:intergenic | 25.0% |
| ! | GAATTCGTTAAGAAACATAT+TGG | + | chr5.4:69468466-69468485 | MS.gene39785:CDS | 25.0% |
| ! | GTATGGTAGAAAATCTTTAT+TGG | + | chr5.4:69465728-69465747 | MS.gene39785:intron | 25.0% |
| ! | TAAAATGAAGTAAACCAACA+TGG | - | chr5.4:69465498-69465517 | None:intergenic | 25.0% |
| ! | TCGTTCTTAAATTATCGAAT+TGG | + | chr5.4:69465988-69466007 | MS.gene39785:intron | 25.0% |
| ! | TGAAGGATCATATAAGTTTA+AGG | - | chr5.4:69467014-69467033 | None:intergenic | 25.0% |
| ! | TGATCAAAATAGGTGAAAAA+CGG | + | chr5.4:69465768-69465787 | MS.gene39785:intron | 25.0% |
| ! | TGTGGATTTACAATATATGA+AGG | + | chr5.4:69468528-69468547 | MS.gene39785:CDS | 25.0% |
| ! | TTCGATAATTTAAGAACGAA+CGG | - | chr5.4:69465987-69466006 | None:intergenic | 25.0% |
| !! | AATGTAATTAGCTCTTGATA+TGG | - | chr5.4:69468163-69468182 | None:intergenic | 25.0% |
| !! | ATGTAATTAGCTCTTGATAT+GGG | - | chr5.4:69468162-69468181 | None:intergenic | 25.0% |
| !! | CATATTATGAGATAATGGTT+TGG | + | chr5.4:69468373-69468392 | MS.gene39785:intron | 25.0% |
| !! | GTATTTAATTTCTCACCTTT+AGG | - | chr5.4:69468850-69468869 | None:intergenic | 25.0% |
| !! | TAATGGTTTTCAATGAATGT+AGG | + | chr5.4:69467679-69467698 | MS.gene39785:intron | 25.0% |
| !! | TACAATATATGAAGGTATAG+AGG | + | chr5.4:69468536-69468555 | MS.gene39785:intron | 25.0% |
| !! | TTATTTCCTCTGTTTTCTAT+GGG | + | chr5.4:69466888-69466907 | MS.gene39785:intron | 25.0% |
| !! | TTTTAAACTCTATTAGCACT+TGG | - | chr5.4:69466988-69467007 | None:intergenic | 25.0% |
| !! | TTTTTCGTAAGAACTACTAT+CGG | - | chr5.4:69469011-69469030 | None:intergenic | 25.0% |
| !!! | AAAGCTTGTTAACTCTTTTT+CGG | + | chr5.4:69465258-69465277 | MS.gene39785:CDS | 25.0% |
| !!! | ATTACCAGTTCTAAAATTTC+TGG | + | chr5.4:69466370-69466389 | MS.gene39785:intron | 25.0% |
| !!! | GATGATTTTAGGAAGAAATT+TGG | - | chr5.4:69468204-69468223 | None:intergenic | 25.0% |
| !!! | GCTTTTTTCAGTTTTGAATT+AGG | + | chr5.4:69465888-69465907 | MS.gene39785:intron | 25.0% |
| !!! | GGTATCATCAGTTTTATTTT+AGG | + | chr5.4:69468651-69468670 | MS.gene39785:intron | 25.0% |
| !!! | TGATATTAGAGAAAGTATTG+AGG | + | chr5.4:69469149-69469168 | MS.gene39785:CDS | 25.0% |
| !!! | TTTGGTAAATCTTTAAAGCA+CGG | + | chr5.4:69465552-69465571 | MS.gene39785:intron | 25.0% |
| !!! | TTTTGAATGGTATTGACTAA+TGG | + | chr5.4:69467662-69467681 | MS.gene39785:intron | 25.0% |
| !!! | TTTTTCACCTATTTTGATCA+GGG | - | chr5.4:69465768-69465787 | None:intergenic | 25.0% |
| AACCTGTAATCAGACAAATA+TGG | - | chr5.4:69466537-69466556 | None:intergenic | 30.0% | |
| AAGTTCATAAAGAATACTGG+CGG | + | chr5.4:69467975-69467994 | MS.gene39785:intron | 30.0% | |
| ACAATTTCTGTGTTCTCAAA+AGG | - | chr5.4:69469050-69469069 | None:intergenic | 30.0% | |
| ACTACTATCGGACATTTATA+AGG | - | chr5.4:69468999-69469018 | None:intergenic | 30.0% | |
| ACTTATTAGTTGTTGCAACA+TGG | + | chr5.4:69467062-69467081 | MS.gene39785:intron | 30.0% | |
| AGAAGTGAAGATTGAATAAC+AGG | - | chr5.4:69465361-69465380 | None:intergenic | 30.0% | |
| AGAGGAAATAAGCCTAAAAA+GGG | - | chr5.4:69466879-69466898 | None:intergenic | 30.0% | |
| ATCATTAGAGGAAAGATAAC+AGG | - | chr5.4:69468068-69468087 | None:intergenic | 30.0% | |
| ATCCATATTTGTCTGATTAC+AGG | + | chr5.4:69466532-69466551 | MS.gene39785:CDS | 30.0% | |
| ATCTTTCCTCTAATGATTCA+CGG | + | chr5.4:69468071-69468090 | MS.gene39785:intron | 30.0% | |
| ATTACCAAAGGTTCATCATA+CGG | - | chr5.4:69468874-69468893 | None:intergenic | 30.0% | |
| ATTGCTTGTATAATTACGGA+TGG | + | chr5.4:69466710-69466729 | MS.gene39785:CDS | 30.0% | |
| CAAATGTAACTTAAACAGCT+GGG | + | chr5.4:69468300-69468319 | MS.gene39785:intron | 30.0% | |
| CATAAAAATGACAAGCAAAG+AGG | - | chr5.4:69466343-69466362 | None:intergenic | 30.0% | |
| CATAAGCATAGGTAAACATA+TGG | - | chr5.4:69466315-69466334 | None:intergenic | 30.0% | |
| CATGCTACAAGTAGTTAAAT+AGG | + | chr5.4:69466072-69466091 | MS.gene39785:intron | 30.0% | |
| CATTCAAAATTCAATTCCAC+AGG | - | chr5.4:69467651-69467670 | None:intergenic | 30.0% | |
| CTGGAAAGAATCAATAAACA+AGG | - | chr5.4:69468957-69468976 | None:intergenic | 30.0% | |
| CTTTCAATAGATGAGAAACA+AGG | + | chr5.4:69468905-69468924 | MS.gene39785:intron | 30.0% | |
| GAAGTGAAGATTGAATAACA+GGG | - | chr5.4:69465360-69465379 | None:intergenic | 30.0% | |
| GAATGTAGGCTTAACAAAAA+AGG | + | chr5.4:69467693-69467712 | MS.gene39785:intron | 30.0% | |
| GATTGAATAACAGGGATAAA+AGG | - | chr5.4:69465352-69465371 | None:intergenic | 30.0% | |
| GCAATGAAACATTTCAACAA+AGG | - | chr5.4:69468686-69468705 | None:intergenic | 30.0% | |
| GGAGATTGCTTGTATAATTA+CGG | + | chr5.4:69466706-69466725 | MS.gene39785:CDS | 30.0% | |
| TAAGAATGAGACAGATGAAA+TGG | + | chr5.4:69467886-69467905 | MS.gene39785:intron | 30.0% | |
| TATGGTCATCTGTAAATTCT+TGG | + | chr5.4:69468630-69468649 | MS.gene39785:intron | 30.0% | |
| TATTGAAGTGGATAGAATTC+TGG | + | chr5.4:69466685-69466704 | MS.gene39785:CDS | 30.0% | |
| TCAATTCCACAGGAAAAAAA+GGG | - | chr5.4:69467641-69467660 | None:intergenic | 30.0% | |
| TCGATAATTTAAGAACGAAC+GGG | - | chr5.4:69465986-69466005 | None:intergenic | 30.0% | |
| TGAATCTGATTTCAGTTTCT+GGG | + | chr5.4:69466171-69466190 | MS.gene39785:intron | 30.0% | |
| TGATTAAGTTTCTACTTTGC+AGG | + | chr5.4:69468438-69468457 | MS.gene39785:intron | 30.0% | |
| TTAACTACTTGTAGCATGTT+TGG | - | chr5.4:69466070-69466089 | None:intergenic | 30.0% | |
| TTCAATTCCACAGGAAAAAA+AGG | - | chr5.4:69467642-69467661 | None:intergenic | 30.0% | |
| TTCGTTAAGAAACATATTGG+AGG | + | chr5.4:69468469-69468488 | MS.gene39785:CDS | 30.0% | |
| TTTGGTCATACATCAAACTA+AGG | + | chr5.4:69467495-69467514 | MS.gene39785:CDS | 30.0% | |
| ! | ATAAAAATGACCAAGGCATT+AGG | + | chr5.4:69465928-69465947 | MS.gene39785:intron | 30.0% |
| ! | CTGTGGAATTGAATTTTGAA+TGG | + | chr5.4:69467649-69467668 | MS.gene39785:intron | 30.0% |
| ! | CTTATTTCCTCTGTTTTCTA+TGG | + | chr5.4:69466887-69466906 | MS.gene39785:intron | 30.0% |
| ! | CTTGTTTCTCATCTATTGAA+AGG | - | chr5.4:69468907-69468926 | None:intergenic | 30.0% |
| !! | ATAGTTGGTTTCTGGTTATA+CGG | + | chr5.4:69468930-69468949 | MS.gene39785:intron | 30.0% |
| !! | TCTTGTTTCTCATTTTTCAC+TGG | - | chr5.4:69466504-69466523 | None:intergenic | 30.0% |
| !!! | GCTTGCTGTTTTTTATTTAG+AGG | + | chr5.4:69466786-69466805 | MS.gene39785:intron | 30.0% |
| !!! | GTTTTTCACCTATTTTGATC+AGG | - | chr5.4:69465769-69465788 | None:intergenic | 30.0% |
| !!! | TTAAATCCCTTTTTTTCCTG+TGG | + | chr5.4:69467632-69467651 | MS.gene39785:intron | 30.0% |
| !!! | TTTATTTTAGGGTCCTGATT+TGG | + | chr5.4:69467477-69467496 | MS.gene39785:intron | 30.0% |
| AAATACATGCCAAAATTGGC+GGG | + | chr5.4:69468763-69468782 | MS.gene39785:CDS | 35.0% | |
| AACACGATACTGACATGTAT+CGG | + | chr5.4:69465587-69465606 | MS.gene39785:intron | 35.0% | |
| AACCTTCCATCTAGTAACAA+TGG | - | chr5.4:69467371-69467390 | None:intergenic | 35.0% | |
| AAGAGGTAACACATAAGCAT+AGG | - | chr5.4:69466326-69466345 | None:intergenic | 35.0% | |
| AAGATAACAGGTTCTGTGAT+AGG | - | chr5.4:69468056-69468075 | None:intergenic | 35.0% | |
| ACCAAGCATAGGTGTTTAAT+CGG | - | chr5.4:69466231-69466250 | None:intergenic | 35.0% | |
| ACTGAAATCAGATTCACTGA+AGG | - | chr5.4:69466167-69466186 | None:intergenic | 35.0% | |
| AGAATGACCCTGATCAAAAT+AGG | + | chr5.4:69465758-69465777 | MS.gene39785:intron | 35.0% | |
| AGGAAATAAGCCTAAAAAGG+GGG | - | chr5.4:69466877-69466896 | None:intergenic | 35.0% | |
| AGTTCATAAAGAATACTGGC+GGG | + | chr5.4:69467976-69467995 | MS.gene39785:intron | 35.0% | |
| ATACATGTCAGTATCGTGTT+CGG | - | chr5.4:69465587-69465606 | None:intergenic | 35.0% | |
| ATCCATTGTTACTAGATGGA+AGG | + | chr5.4:69467366-69467385 | MS.gene39785:intron | 35.0% | |
| ATTGTTGCTCGTCATCAAAA+GGG | + | chr5.4:69465821-69465840 | MS.gene39785:intron | 35.0% | |
| CAGAATCCATTGTTACTAGA+TGG | + | chr5.4:69467362-69467381 | MS.gene39785:intron | 35.0% | |
| CAGAGGAAATAAGCCTAAAA+AGG | - | chr5.4:69466880-69466899 | None:intergenic | 35.0% | |
| CATAACAGAATCTTGCATTG+AGG | - | chr5.4:69466205-69466224 | None:intergenic | 35.0% | |
| CTGCAAAATCGAAGTTAAAC+AGG | - | chr5.4:69468743-69468762 | None:intergenic | 35.0% | |
| CTTGAAGAGTTAATCGAGAA+CGG | + | chr5.4:69467203-69467222 | MS.gene39785:intron | 35.0% | |
| GAAATACATGCCAAAATTGG+CGG | + | chr5.4:69468762-69468781 | MS.gene39785:intron | 35.0% | |
| GAAATGAAGATGCACAATCA+TGG | + | chr5.4:69465706-69465725 | MS.gene39785:intron | 35.0% | |
| GAGGAAATAAGCCTAAAAAG+GGG | - | chr5.4:69466878-69466897 | None:intergenic | 35.0% | |
| GCAAATGTAACTTAAACAGC+TGG | + | chr5.4:69468299-69468318 | MS.gene39785:intron | 35.0% | |
| GCAGAAATACATGCCAAAAT+TGG | + | chr5.4:69468759-69468778 | MS.gene39785:intron | 35.0% | |
| GGATGGAAACTTAACCAAAT+CGG | + | chr5.4:69466727-69466746 | MS.gene39785:CDS | 35.0% | |
| GTATAACCAGAAACCAACTA+TGG | - | chr5.4:69468931-69468950 | None:intergenic | 35.0% | |
| GTATTTCATGTCTACCATGT+TGG | + | chr5.4:69465481-69465500 | MS.gene39785:intron | 35.0% | |
| GTGAATCTGATTTCAGTTTC+TGG | + | chr5.4:69466170-69466189 | MS.gene39785:intron | 35.0% | |
| GTTTGATGTATGACCAAATC+AGG | - | chr5.4:69467493-69467512 | None:intergenic | 35.0% | |
| TCAACAATCGAAGTTAAGAC+AGG | - | chr5.4:69468708-69468727 | None:intergenic | 35.0% | |
| TGCAGGTTTGAATATTGAAG+TGG | + | chr5.4:69466673-69466692 | MS.gene39785:intron | 35.0% | |
| TTGCAAACACTTAACAGCTA+TGG | - | chr5.4:69468276-69468295 | None:intergenic | 35.0% | |
| TTTGCAATGACTGACATCAT+TGG | - | chr5.4:69468352-69468371 | None:intergenic | 35.0% | |
| ! | AATATATACCTCCACCGATT+TGG | - | chr5.4:69466744-69466763 | None:intergenic | 35.0% |
| ! | AGTTTTCCCATAGAAAACAG+AGG | - | chr5.4:69466897-69466916 | None:intergenic | 35.0% |
| ! | ATCAAAAGGGTATGTTTGCA+TGG | + | chr5.4:69465834-69465853 | MS.gene39785:intron | 35.0% |
| ! | TAAACCTTTTGTGTGTTTGC+AGG | + | chr5.4:69466656-69466675 | MS.gene39785:intron | 35.0% |
| !! | AAATCTTTAAAGCACGGACA+TGG | + | chr5.4:69465558-69465577 | MS.gene39785:intron | 35.0% |
| !! | TGACATCATTGGCTTGATAT+AGG | - | chr5.4:69468341-69468360 | None:intergenic | 35.0% |
| !!! | CTGTGCCTTTTTTGTTTTGA+AGG | - | chr5.4:69469120-69469139 | None:intergenic | 35.0% |
| !!! | TGGTCCAGAAATTTTAGAAC+TGG | - | chr5.4:69466377-69466396 | None:intergenic | 35.0% |
| AAACTTAACCAAATCGGTGG+AGG | + | chr5.4:69466733-69466752 | MS.gene39785:CDS | 40.0% | |
| AATACATGCCAAAATTGGCG+GGG | + | chr5.4:69468764-69468783 | MS.gene39785:CDS | 40.0% | |
| AATCGTTTCTCTACAGAACG+TGG | + | chr5.4:69468234-69468253 | MS.gene39785:intron | 40.0% | |
| ACACAACCACATGTAAGCAT+TGG | - | chr5.4:69466397-69466416 | None:intergenic | 40.0% | |
| ACACGATACTGACATGTATC+GGG | + | chr5.4:69465588-69465607 | MS.gene39785:intron | 40.0% | |
| AGCATAATGTCCTAATGCCT+TGG | - | chr5.4:69465941-69465960 | None:intergenic | 40.0% | |
| AGGGACAATGTACAGGAAAA+AGG | - | chr5.4:69468402-69468421 | None:intergenic | 40.0% | |
| AGGTACTTACAAACCTCTCT+TGG | + | chr5.4:69468489-69468508 | MS.gene39785:CDS | 40.0% | |
| ATGAGAAACAAGGCCATAGT+TGG | + | chr5.4:69468915-69468934 | MS.gene39785:intron | 40.0% | |
| ATGGAGGAGTTTGAAAGGAA+AGG | - | chr5.4:69466047-69466066 | None:intergenic | 40.0% | |
| ATTACAGGTTACCTCTTGTC+TGG | + | chr5.4:69466547-69466566 | MS.gene39785:CDS | 40.0% | |
| CAAACCTGCAAACACACAAA+AGG | - | chr5.4:69466663-69466682 | None:intergenic | 40.0% | |
| CTAACACCGTGAATCATTAG+AGG | - | chr5.4:69468080-69468099 | None:intergenic | 40.0% | |
| CTACTTGTAGCATGTTTGGA+TGG | - | chr5.4:69466066-69466085 | None:intergenic | 40.0% | |
| CTTACAAGCACCTAAATCTC+AGG | - | chr5.4:69466943-69466962 | None:intergenic | 40.0% | |
| CTTGATATGGGATCACAAAC+TGG | - | chr5.4:69468150-69468169 | None:intergenic | 40.0% | |
| GAAGATGCACAATCATGGTA+TGG | + | chr5.4:69465711-69465730 | MS.gene39785:intron | 40.0% | |
| GATCAGTGCATTGAAACTTC+TGG | + | chr5.4:69466632-69466651 | MS.gene39785:intron | 40.0% | |
| GATTGTTGCTCGTCATCAAA+AGG | + | chr5.4:69465820-69465839 | MS.gene39785:intron | 40.0% | |
| GCAGCTGCAATATACTTTCT+TGG | + | chr5.4:69466438-69466457 | MS.gene39785:intron | 40.0% | |
| GGCAGGAAATTCGATATATG+TGG | + | chr5.4:69468510-69468529 | MS.gene39785:CDS | 40.0% | |
| GGCTATGCACTAATTACCAA+AGG | - | chr5.4:69468886-69468905 | None:intergenic | 40.0% | |
| TAAGAACGAACGGGAAAGAA+TGG | - | chr5.4:69465977-69465996 | None:intergenic | 40.0% | |
| TACTCCGTATGATGAACCTT+TGG | + | chr5.4:69468867-69468886 | MS.gene39785:intron | 40.0% | |
| TGAAAGAGAAGCTGAAGAAC+AGG | + | chr5.4:69467735-69467754 | MS.gene39785:CDS | 40.0% | |
| TGAGGAACTCAAGTACTACA+AGG | + | chr5.4:69469167-69469186 | MS.gene39785:CDS | 40.0% | |
| TGCATTCGTTGGTATCCTAA+AGG | + | chr5.4:69468832-69468851 | MS.gene39785:CDS | 40.0% | |
| TGGAAACTTAACCAAATCGG+TGG | + | chr5.4:69466730-69466749 | MS.gene39785:CDS | 40.0% | |
| TTCCTCAACACACAAATCAC+AGG | - | chr5.4:69465689-69465708 | None:intergenic | 40.0% | |
| TTTGGATGGAGGAGTTTGAA+AGG | - | chr5.4:69466052-69466071 | None:intergenic | 40.0% | |
| ! | AAAAGGGTATGTTTGCATGG+AGG | + | chr5.4:69465837-69465856 | MS.gene39785:intron | 40.0% |
| ! | AAAGGGTATGTTTGCATGGA+GGG | + | chr5.4:69465838-69465857 | MS.gene39785:intron | 40.0% |
| ! | ACAAAAAAGGCACAGAGCTT+TGG | + | chr5.4:69469125-69469144 | MS.gene39785:CDS | 40.0% |
| ! | ATTGATGACTCAACGACCAA+AGG | - | chr5.4:69466256-69466275 | None:intergenic | 40.0% |
| ! | CTAGTAACTTCCCCCTTTTT+AGG | + | chr5.4:69466864-69466883 | MS.gene39785:intron | 40.0% |
| ! | GCAATATACTTTCTTGGTGC+AGG | + | chr5.4:69466444-69466463 | MS.gene39785:intron | 40.0% |
| ! | TATGTTTGCATGGAGGGTTT+TGG | + | chr5.4:69465844-69465863 | MS.gene39785:intron | 40.0% |
| !! | AGAATGTGTTACTTCGAGAG+TGG | + | chr5.4:69466599-69466618 | MS.gene39785:intron | 40.0% |
| !! | CATCGATTCACGTGTTGATA+TGG | + | chr5.4:69468612-69468631 | MS.gene39785:intron | 40.0% |
| !! | CATTGGCTTGATATAGGAGT+AGG | - | chr5.4:69468335-69468354 | None:intergenic | 40.0% |
| !! | GGCAAACATTTTCAAGCCAA+AGG | + | chr5.4:69469188-69469207 | MS.gene39785:CDS | 40.0% |
| !! | TGGATTGACTTGGAAATGAC+TGG | + | chr5.4:69466567-69466586 | MS.gene39785:CDS | 40.0% |
| AAAAGTCATCACGCTGCTAG+TGG | + | chr5.4:69467547-69467566 | MS.gene39785:CDS | 45.0% | |
| AAGCACCTAAATCTCAGGCA+AGG | - | chr5.4:69466938-69466957 | None:intergenic | 45.0% | |
| AAGTGTTCCAGAGCCTAAGT+GGG | + | chr5.4:69466106-69466125 | MS.gene39785:intron | 45.0% | |
| ACATTGTCCCTTGATCAGTG+AGG | + | chr5.4:69468411-69468430 | MS.gene39785:intron | 45.0% | |
| ACCTCTTGTCTGGATTGACT+TGG | + | chr5.4:69466557-69466576 | MS.gene39785:CDS | 45.0% | |
| ACTTACAAACCTCTCTTGGC+AGG | + | chr5.4:69468493-69468512 | MS.gene39785:CDS | 45.0% | |
| AGCACGTCAATCACATGGTA+TGG | - | chr5.4:69467770-69467789 | None:intergenic | 45.0% | |
| AGCATACCAGAAGGAAGAGA+AGG | - | chr5.4:69465322-69465341 | None:intergenic | 45.0% | |
| AGGAAGAGAAGGAGGTTGAA+TGG | - | chr5.4:69465311-69465330 | None:intergenic | 45.0% | |
| ATACCAGAAGGAAGAGAAGG+AGG | - | chr5.4:69465319-69465338 | None:intergenic | 45.0% | |
| ATCAGTTGCCTCACTGATCA+AGG | - | chr5.4:69468422-69468441 | None:intergenic | 45.0% | |
| ATCGAATTTCCTGCCAAGAG+AGG | - | chr5.4:69468505-69468524 | None:intergenic | 45.0% | |
| CACGATACTGACATGTATCG+GGG | + | chr5.4:69465589-69465608 | MS.gene39785:intron | 45.0% | |
| CCTTGTTAGAGAACTCTTGG+CGG | + | chr5.4:69468006-69468025 | MS.gene39785:intron | 45.0% | |
| CTGATCAAGGGACAATGTAC+AGG | - | chr5.4:69468409-69468428 | None:intergenic | 45.0% | |
| CTTGTAGCATGTTTGGATGG+AGG | - | chr5.4:69466063-69466082 | None:intergenic | 45.0% | |
| GCCGATTAAACACCTATGCT+TGG | + | chr5.4:69466227-69466246 | MS.gene39785:intron | 45.0% | |
| GGAAGTTACTAGCTAGAGAC+TGG | - | chr5.4:69466856-69466875 | None:intergenic | 45.0% | |
| GGTCCTTGTTAGAGAACTCT+TGG | + | chr5.4:69468003-69468022 | MS.gene39785:intron | 45.0% | |
| TAAAGAATACTGGCGGGACT+CGG | + | chr5.4:69467982-69468001 | MS.gene39785:intron | 45.0% | |
| TAAGTGTTCCAGAGCCTAAG+TGG | + | chr5.4:69466105-69466124 | MS.gene39785:intron | 45.0% | |
| TCAGTTGCCTCACTGATCAA+GGG | - | chr5.4:69468421-69468440 | None:intergenic | 45.0% | |
| TCCAAGTCAATCCAGACAAG+AGG | - | chr5.4:69466561-69466580 | None:intergenic | 45.0% | |
| TCCCCTCCTCCTTCAAATAA+GGG | - | chr5.4:69467315-69467334 | None:intergenic | 45.0% | |
| TCTCAGCTCTTTGCATTCGT+TGG | + | chr5.4:69468821-69468840 | MS.gene39785:CDS | 45.0% | |
| TCTGGACCAATGCTTACATG+TGG | + | chr5.4:69466388-69466407 | MS.gene39785:intron | 45.0% | |
| TGGTCGTTGAGTCATCAATG+AGG | + | chr5.4:69466257-69466276 | MS.gene39785:intron | 45.0% | |
| TTCCCCTCCTCCTTCAAATA+AGG | - | chr5.4:69467316-69467335 | None:intergenic | 45.0% | |
| TTTGGAGGGAAAGGAAAGGA+TGG | + | chr5.4:69465862-69465881 | MS.gene39785:intron | 45.0% | |
| ! | AAGAGAGCACGTCAATCACA+TGG | - | chr5.4:69467775-69467794 | None:intergenic | 45.0% |
| ! | ACAAGGCCATAGTTGGTTTC+TGG | + | chr5.4:69468922-69468941 | MS.gene39785:intron | 45.0% |
| ! | ACCCTTATTTGAAGGAGGAG+GGG | + | chr5.4:69467311-69467330 | MS.gene39785:intron | 45.0% |
| ! | AGCCTGTGATTTGTGTGTTG+AGG | + | chr5.4:69465684-69465703 | MS.gene39785:intron | 45.0% |
| ! | AGTGGTGGAGAGAAAGCTAA+TGG | + | chr5.4:69466468-69466487 | MS.gene39785:CDS | 45.0% |
| ! | ATTGACGTGCTCTCTTTTCG+TGG | + | chr5.4:69467779-69467798 | MS.gene39785:intron | 45.0% |
| ! | CACCCTTATTTGAAGGAGGA+GGG | + | chr5.4:69467310-69467329 | MS.gene39785:intron | 45.0% |
| ! | TACTTTCTTGGTGCAGGTAG+TGG | + | chr5.4:69466450-69466469 | MS.gene39785:intron | 45.0% |
| ! | TAGCCTCCACCCTTATTTGA+AGG | + | chr5.4:69467303-69467322 | MS.gene39785:intron | 45.0% |
| ! | TTGACGTGCTCTCTTTTCGT+GGG | + | chr5.4:69467780-69467799 | MS.gene39785:intron | 45.0% |
| !! | AAACTAAGGAGTGCCTTGAC+AGG | + | chr5.4:69467509-69467528 | MS.gene39785:CDS | 45.0% |
| !! | ATCTGAAGTGTCGATGCTAC+AGG | + | chr5.4:69465629-69465648 | MS.gene39785:intron | 45.0% |
| !! | TCTGAAGTGTCGATGCTACA+GGG | + | chr5.4:69465630-69465649 | MS.gene39785:intron | 45.0% |
| !!! | TTTGCATGGAGGGTTTTGGA+GGG | + | chr5.4:69465848-69465867 | MS.gene39785:intron | 45.0% |
| ACCATTCTCCCATCCTGTCA+AGG | - | chr5.4:69467525-69467544 | None:intergenic | 50.0% | |
| ACCTAAATCTCAGGCAAGGC+GGG | - | chr5.4:69466934-69466953 | None:intergenic | 50.0% | |
| ACTGACATGTATCGGGGTAG+CGG | + | chr5.4:69465595-69465614 | MS.gene39785:intron | 50.0% | |
| AGTGTTCCAGAGCCTAAGTG+GGG | + | chr5.4:69466107-69466126 | MS.gene39785:intron | 50.0% | |
| CAACCTCCTTCTCTTCCTTC+TGG | + | chr5.4:69465313-69465332 | MS.gene39785:CDS | 50.0% | |
| CACCTAAATCTCAGGCAAGG+CGG | - | chr5.4:69466935-69466954 | None:intergenic | 50.0% | |
| CCCAGCATCTCTGCATAGAT+GGG | + | chr5.4:69467937-69467956 | MS.gene39785:intron | 50.0% | |
| CCCATCTATGCAGAGATGCT+GGG | - | chr5.4:69467940-69467959 | None:intergenic | 50.0% | |
| CCGCCAAGAGTTCTCTAACA+AGG | - | chr5.4:69468009-69468028 | None:intergenic | 50.0% | |
| CCTCCTCCTTCAAATAAGGG+TGG | - | chr5.4:69467312-69467331 | None:intergenic | 50.0% | |
| CCTCCTTCAAATAAGGGTGG+AGG | - | chr5.4:69467309-69467328 | None:intergenic | 50.0% | |
| GACCAAAGGCTACCAAGCAT+AGG | - | chr5.4:69466242-69466261 | None:intergenic | 50.0% | |
| GGGTAGAGTAGCATACCAGA+AGG | - | chr5.4:69465331-69465350 | None:intergenic | 50.0% | |
| TCCCAGCATCTCTGCATAGA+TGG | + | chr5.4:69467936-69467955 | MS.gene39785:intron | 50.0% | |
| TCCCATCTATGCAGAGATGC+TGG | - | chr5.4:69467941-69467960 | None:intergenic | 50.0% | |
| TTCTTCCTGCATCCCCACTT+AGG | - | chr5.4:69466122-69466141 | None:intergenic | 50.0% | |
| ! | CACCTATGCTTGGTAGCCTT+TGG | + | chr5.4:69466237-69466256 | MS.gene39785:intron | 50.0% |
| ! | CCACCCTTATTTGAAGGAGG+AGG | + | chr5.4:69467309-69467328 | MS.gene39785:intron | 50.0% |
| ! | CCTCCACCCTTATTTGAAGG+AGG | + | chr5.4:69467306-69467325 | MS.gene39785:intron | 50.0% |
| ! | GAGAAGATCCCCGCCAATTT+TGG | - | chr5.4:69468775-69468794 | None:intergenic | 50.0% |
| ! | TTTCTTGGTGCAGGTAGTGG+TGG | + | chr5.4:69466453-69466472 | MS.gene39785:intron | 50.0% |
| !! | AAGGAGTGCCTTGACAGGAT+GGG | + | chr5.4:69467514-69467533 | MS.gene39785:CDS | 50.0% |
| !! | GTTTGCATGGAGGGTTTTGG+AGG | + | chr5.4:69465847-69465866 | MS.gene39785:intron | 50.0% |
| !! | TAAGGAGTGCCTTGACAGGA+TGG | + | chr5.4:69467513-69467532 | MS.gene39785:CDS | 50.0% |
| !!! | ATGGAGGGTTTTGGAGGGAA+AGG | + | chr5.4:69465853-69465872 | MS.gene39785:intron | 50.0% |
| !!! | GGGTTTTGGAGGGAAAGGAA+AGG | + | chr5.4:69465858-69465877 | MS.gene39785:intron | 50.0% |
| ACCCGCCTTGCCTGAGATTT+AGG | + | chr5.4:69466930-69466949 | MS.gene39785:intron | 55.0% | |
| CTGACATGTATCGGGGTAGC+GGG | + | chr5.4:69465596-69465615 | MS.gene39785:intron | 55.0% | |
| GCCTTGACAGGATGGGAGAA+TGG | + | chr5.4:69467521-69467540 | MS.gene39785:CDS | 55.0% | |
| !! | ATCTCAGGCAAGGCGGGTTA+TGG | - | chr5.4:69466928-69466947 | None:intergenic | 55.0% |
| CAGAGCCTAAGTGGGGATGC+AGG | + | chr5.4:69466114-69466133 | MS.gene39785:intron | 60.0% | |
| CTGCATCCCCACTTAGGCTC+TGG | - | chr5.4:69466116-69466135 | None:intergenic | 60.0% | |
| GGCGGGGATCTTCTCTCATG+TGG | + | chr5.4:69468780-69468799 | MS.gene39785:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 69465253 | 69469221 | 69465253 | ID=MS.gene39785 |
| chr5.4 | mRNA | 69465253 | 69469221 | 69465253 | ID=MS.gene39785.t1;Parent=MS.gene39785 |
| chr5.4 | exon | 69465253 | 69465334 | 69465253 | ID=MS.gene39785.t1.exon1;Parent=MS.gene39785.t1 |
| chr5.4 | CDS | 69465253 | 69465334 | 69465253 | ID=cds.MS.gene39785.t1;Parent=MS.gene39785.t1 |
| chr5.4 | exon | 69466466 | 69466588 | 69466466 | ID=MS.gene39785.t1.exon2;Parent=MS.gene39785.t1 |
| chr5.4 | CDS | 69466466 | 69466588 | 69466466 | ID=cds.MS.gene39785.t1;Parent=MS.gene39785.t1 |
| chr5.4 | exon | 69466678 | 69466754 | 69466678 | ID=MS.gene39785.t1.exon3;Parent=MS.gene39785.t1 |
| chr5.4 | CDS | 69466678 | 69466754 | 69466678 | ID=cds.MS.gene39785.t1;Parent=MS.gene39785.t1 |
| chr5.4 | exon | 69467487 | 69467568 | 69467487 | ID=MS.gene39785.t1.exon4;Parent=MS.gene39785.t1 |
| chr5.4 | CDS | 69467487 | 69467568 | 69467487 | ID=cds.MS.gene39785.t1;Parent=MS.gene39785.t1 |
| chr5.4 | exon | 69467701 | 69467756 | 69467701 | ID=MS.gene39785.t1.exon5;Parent=MS.gene39785.t1 |
| chr5.4 | CDS | 69467701 | 69467756 | 69467701 | ID=cds.MS.gene39785.t1;Parent=MS.gene39785.t1 |
| chr5.4 | exon | 69468460 | 69468549 | 69468460 | ID=MS.gene39785.t1.exon6;Parent=MS.gene39785.t1 |
| chr5.4 | CDS | 69468460 | 69468549 | 69468460 | ID=cds.MS.gene39785.t1;Parent=MS.gene39785.t1 |
| chr5.4 | exon | 69468763 | 69468853 | 69468763 | ID=MS.gene39785.t1.exon7;Parent=MS.gene39785.t1 |
| chr5.4 | CDS | 69468763 | 69468853 | 69468763 | ID=cds.MS.gene39785.t1;Parent=MS.gene39785.t1 |
| chr5.4 | exon | 69469103 | 69469221 | 69469103 | ID=MS.gene39785.t1.exon8;Parent=MS.gene39785.t1 |
| chr5.4 | CDS | 69469103 | 69469221 | 69469103 | ID=cds.MS.gene39785.t1;Parent=MS.gene39785.t1 |
| Gene Sequence |
| Protein sequence |
