Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39914.t1 | XP_003590533.2 | 97.3 | 291 | 8 | 0 | 1 | 291 | 39 | 329 | 8.60E-166 | 592.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39914.t1 | Q9SX99 | 33.3 | 243 | 149 | 5 | 39 | 277 | 20 | 253 | 2.7e-27 | 124.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39914.t1 | G7ICM6 | 97.3 | 291 | 8 | 0 | 1 | 291 | 1 | 291 | 6.2e-166 | 592.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051538 | MS.gene39914 | -0.807949 | 3.94E-50 | -1.69E-46 |
| MS.gene056405 | MS.gene39914 | 0.891346 | 4.32E-74 | -1.69E-46 |
| MS.gene056466 | MS.gene39914 | -0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene056607 | MS.gene39914 | 0.880712 | 4.38E-70 | -1.69E-46 |
| MS.gene059026 | MS.gene39914 | 0.852907 | 3.39E-61 | -1.69E-46 |
| MS.gene060906 | MS.gene39914 | -0.807679 | 4.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39914.t1 | MTR_1g070840 | 97.251 | 291 | 8 | 0 | 1 | 291 | 1 | 291 | 0.0 | 594 |
| MS.gene39914.t1 | MTR_1g021080 | 37.868 | 272 | 144 | 10 | 14 | 278 | 8 | 261 | 1.85e-46 | 157 |
| MS.gene39914.t1 | MTR_6g092780 | 62.500 | 48 | 16 | 1 | 210 | 257 | 422 | 467 | 8.65e-14 | 71.6 |
| MS.gene39914.t1 | MTR_6g092780 | 44.118 | 68 | 36 | 1 | 210 | 277 | 351 | 416 | 2.17e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39914.t1 | AT1G47720 | 33.784 | 222 | 136 | 4 | 60 | 277 | 39 | 253 | 4.31e-32 | 119 |
| MS.gene39914.t1 | AT4G20010 | 34.222 | 225 | 129 | 6 | 54 | 266 | 76 | 293 | 1.23e-27 | 110 |
| MS.gene39914.t1 | AT4G20010 | 57.692 | 52 | 20 | 1 | 210 | 261 | 310 | 359 | 2.50e-12 | 67.0 |
| MS.gene39914.t1 | AT4G20010 | 35.398 | 226 | 125 | 8 | 54 | 266 | 76 | 293 | 2.00e-27 | 109 |
| MS.gene39914.t1 | AT4G20010 | 57.692 | 52 | 20 | 1 | 210 | 261 | 310 | 359 | 2.57e-12 | 67.0 |
| MS.gene39914.t1 | AT5G44785 | 33.971 | 209 | 121 | 6 | 66 | 264 | 71 | 272 | 2.20e-22 | 96.7 |
| MS.gene39914.t1 | AT5G44785 | 58.182 | 55 | 21 | 1 | 210 | 264 | 380 | 432 | 7.25e-14 | 71.6 |
| MS.gene39914.t1 | AT5G44785 | 33.971 | 209 | 121 | 6 | 66 | 264 | 71 | 272 | 2.31e-22 | 96.7 |
| MS.gene39914.t1 | AT5G44785 | 58.182 | 55 | 21 | 1 | 210 | 264 | 378 | 430 | 7.92e-14 | 71.6 |
| MS.gene39914.t1 | AT1G31010 | 26.556 | 241 | 143 | 6 | 60 | 274 | 56 | 288 | 3.53e-18 | 84.0 |
Find 87 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGGATTCATTTGACATTT+TGG | 0.051547 | 1.4:-58010539 | MS.gene39914:CDS |
| TTGAATTTGGGGATGAAATT+AGG | 0.122392 | 1.4:+58010813 | None:intergenic |
| GGAAAATGGGAGTTTGAATT+TGG | 0.165018 | 1.4:+58010800 | None:intergenic |
| TCCTTGTTCCATGAAATTTC+AGG | 0.224276 | 1.4:+58010684 | None:intergenic |
| GGTCATCAGATTCATGTTTC+TGG | 0.230684 | 1.4:-58010477 | MS.gene39914:CDS |
| TGCTTAAAATCAGGAGCTTT+GGG | 0.240351 | 1.4:+58006246 | None:intergenic |
| GAAGAGAGTGTTGTGGAAAA+TGG | 0.274002 | 1.4:+58010786 | None:intergenic |
| TGGGGATGAAATTAGGGTTT+TGG | 0.282218 | 1.4:+58010820 | None:intergenic |
| GATACTATTGATTCTCTTGA+TGG | 0.293460 | 1.4:-58010441 | MS.gene39914:CDS |
| TGAATTTGGGGATGAAATTA+GGG | 0.312987 | 1.4:+58010814 | None:intergenic |
| GAAAATGGGAGTTTGAATTT+GGG | 0.332653 | 1.4:+58010801 | None:intergenic |
| GTGCTTAAAATCAGGAGCTT+TGG | 0.338408 | 1.4:+58006245 | None:intergenic |
| GTATGATGCTGCTCCATTAT+TGG | 0.343435 | 1.4:+58010716 | None:intergenic |
| AGCAACTCCGTCAATTTAAT+CGG | 0.355879 | 1.4:-58010657 | MS.gene39914:CDS |
| GAAATCAAACACCTTCCTTC+CGG | 0.356017 | 1.4:-58010615 | MS.gene39914:CDS |
| AAATCAAACACCTTCCTTCC+GGG | 0.357060 | 1.4:-58010614 | MS.gene39914:CDS |
| CAAACAACAAACTTACTATA+AGG | 0.360042 | 1.4:-58010418 | MS.gene39914:intron |
| CTTCCGGGAAAGTTGTTGCT+TGG | 0.369233 | 1.4:-58010599 | MS.gene39914:CDS |
| CTATTGTCCCACCACTCCCC+TGG | 0.369869 | 1.4:+58009768 | None:intergenic |
| TCCAATTCCATCACCAATAA+TGG | 0.379397 | 1.4:-58010729 | MS.gene39914:CDS |
| CAGGGGAGTGGTGGGACAAT+AGG | 0.384072 | 1.4:-58009767 | MS.gene39914:CDS |
| TCCATTATTGGTGATGGAAT+TGG | 0.384641 | 1.4:+58010728 | None:intergenic |
| GGGTCTTATACCGGTCAAAA+TGG | 0.387486 | 1.4:-58006135 | MS.gene39914:CDS |
| CATGTCTAATATTTCCAGTT+GGG | 0.406821 | 1.4:+58006164 | None:intergenic |
| TGGTAGGATGCCCGTAGATA+TGG | 0.414708 | 1.4:-58006115 | MS.gene39914:CDS |
| AGTCCAAGCAACAACTTTCC+CGG | 0.430883 | 1.4:+58010596 | None:intergenic |
| AGCAGCTGAATTTCATTGAT+AGG | 0.434295 | 1.4:-58010295 | MS.gene39914:CDS |
| CCTTGTTCCATGAAATTTCA+GGG | 0.435573 | 1.4:+58010685 | None:intergenic |
| GGAGAAGCTCTGTGGATTGA+TGG | 0.439305 | 1.4:-58006213 | MS.gene39914:CDS |
| GAAATTTCTGTGGATTGGTT+TGG | 0.442612 | 1.4:+58010764 | None:intergenic |
| AAGTTGAAATTTCTGTGGAT+TGG | 0.456639 | 1.4:+58010759 | None:intergenic |
| TTGCCAACCCAGGGGAGTGG+TGG | 0.459728 | 1.4:-58009776 | MS.gene39914:CDS |
| CTGGTTCTGTGGTGGAATTA+TGG | 0.460092 | 1.4:-58009809 | MS.gene39914:CDS |
| GACGAAGCCGATTAAATTGA+CGG | 0.460435 | 1.4:+58010650 | None:intergenic |
| GTATCCTTGTGCTTAAAATC+AGG | 0.463490 | 1.4:+58006237 | None:intergenic |
| TCCAGTTGGGATTTGACCCA+TGG | 0.465033 | 1.4:+58006177 | None:intergenic |
| ACCATGGGTCAAATCCCAAC+TGG | 0.466020 | 1.4:-58006178 | MS.gene39914:CDS |
| CAAGCTTTCTTTGCCAACCC+AGG | 0.471812 | 1.4:-58009786 | MS.gene39914:CDS |
| TCTTTGCCAACCCAGGGGAG+TGG | 0.478438 | 1.4:-58009779 | MS.gene39914:CDS |
| TATTGTCCCACCACTCCCCT+GGG | 0.482045 | 1.4:+58009769 | None:intergenic |
| ATCTGCGCTCACCATATCTA+CGG | 0.486147 | 1.4:+58006104 | None:intergenic |
| GGAAGGTGTTTGATTTCGAC+CGG | 0.488766 | 1.4:+58010621 | None:intergenic |
| AAGAGAGTGTTGTGGAAAAT+GGG | 0.490916 | 1.4:+58010787 | None:intergenic |
| AAGCTTTCTTTGCCAACCCA+GGG | 0.515795 | 1.4:-58009785 | MS.gene39914:CDS |
| ATGAGGATGGGGTCTTATAC+CGG | 0.520447 | 1.4:-58006144 | MS.gene39914:CDS |
| TCATGTCTAATATTTCCAGT+TGG | 0.522776 | 1.4:+58006163 | None:intergenic |
| ATCAGATTCATGTTTCTGGT+CGG | 0.524990 | 1.4:-58010473 | MS.gene39914:CDS |
| GGGAGTGGTGGGACAATAGG+AGG | 0.525627 | 1.4:-58009764 | MS.gene39914:CDS |
| GTCCCACCACTCCCCTGGGT+TGG | 0.526435 | 1.4:+58009773 | None:intergenic |
| TGTTATTGTTTCAGGCAAGA+AGG | 0.526995 | 1.4:-58009856 | MS.gene39914:intron |
| AAGGCGAGTTATGCTTCAAA+TGG | 0.528529 | 1.4:-58009837 | MS.gene39914:CDS |
| GAAATATTAGACATGAGGAT+GGG | 0.536442 | 1.4:-58006156 | MS.gene39914:CDS |
| TATGCTTCAAATGGTACGAC+TGG | 0.538035 | 1.4:-58009828 | MS.gene39914:CDS |
| TGCTGCTCCATTATTGGTGA+TGG | 0.540830 | 1.4:+58010722 | None:intergenic |
| GCTTCTCAACATGTTCAGAA+AGG | 0.542292 | 1.4:-58010498 | MS.gene39914:CDS |
| CTTATACCGGTCAAAATGGT+AGG | 0.543946 | 1.4:-58006131 | MS.gene39914:CDS |
| CATTGATAGGAGTGACGCGC+CGG | 0.549062 | 1.4:-58010282 | MS.gene39914:CDS |
| GGAAATATTAGACATGAGGA+TGG | 0.554921 | 1.4:-58006157 | MS.gene39914:CDS |
| AATCGGCTTCGTCGCAAACC+CGG | 0.555320 | 1.4:-58010640 | MS.gene39914:CDS |
| TGCCAACCCAGGGGAGTGGT+GGG | 0.556445 | 1.4:-58009775 | MS.gene39914:CDS |
| AGTTGGGATTTGACCCATGG+TGG | 0.556762 | 1.4:+58006180 | None:intergenic |
| CCCTGAAATTTCATGGAACA+AGG | 0.559947 | 1.4:-58010685 | MS.gene39914:CDS |
| CAACAACTTTCCCGGAAGGA+AGG | 0.564641 | 1.4:+58010604 | None:intergenic |
| CTTGTTCCATGAAATTTCAG+GGG | 0.564810 | 1.4:+58010686 | None:intergenic |
| GGATTTGACCCATGGTGGAG+TGG | 0.565295 | 1.4:+58006185 | None:intergenic |
| TGGTAGATCCACTCCACCAT+GGG | 0.571714 | 1.4:-58006193 | MS.gene39914:CDS |
| AAAATGGGAGTTTGAATTTG+GGG | 0.572671 | 1.4:+58010802 | None:intergenic |
| TCTGCGCTCACCATATCTAC+GGG | 0.572725 | 1.4:+58006105 | None:intergenic |
| TTGTTCCATGAAATTTCAGG+GGG | 0.591210 | 1.4:+58010687 | None:intergenic |
| GCTTAAAATCAGGAGCTTTG+GGG | 0.595796 | 1.4:+58006247 | None:intergenic |
| AAAACGCTTCGCAAATGTCG+TGG | 0.597891 | 1.4:-58010557 | MS.gene39914:CDS |
| TCTTGATCATGTGACCGCAC+CGG | 0.610253 | 1.4:+58010263 | None:intergenic |
| AAATATTAGACATGAGGATG+GGG | 0.613312 | 1.4:-58006155 | MS.gene39914:CDS |
| ACTTCAAGTTGAAATTTCTG+TGG | 0.615724 | 1.4:+58010754 | None:intergenic |
| TTAAATTGACGGAGTTGCTG+AGG | 0.615841 | 1.4:+58010661 | None:intergenic |
| TGGTTTGGAAGAGAGTGTTG+TGG | 0.623476 | 1.4:+58010779 | None:intergenic |
| AAATGGTACGACTGGTTCTG+TGG | 0.623810 | 1.4:-58009820 | MS.gene39914:CDS |
| AACTGGAAATATTAGACATG+AGG | 0.632652 | 1.4:-58006161 | MS.gene39914:CDS |
| CAAGCAACAACTTTCCCGGA+AGG | 0.636873 | 1.4:+58010600 | None:intergenic |
| ATGGTAGATCCACTCCACCA+TGG | 0.638276 | 1.4:-58006194 | MS.gene39914:CDS |
| GAAGGTGTTTGATTTCGACC+GGG | 0.654745 | 1.4:+58010622 | None:intergenic |
| TTCATTATGTCTGATGACAA+TGG | 0.656636 | 1.4:-58010233 | MS.gene39914:intron |
| AGCTTTCTTTGCCAACCCAG+GGG | 0.662573 | 1.4:-58009784 | MS.gene39914:CDS |
| AGGATACTGGAGAAGCTCTG+TGG | 0.677895 | 1.4:-58006221 | MS.gene39914:CDS |
| ATAGGAGTGACGCGCCGGTG+CGG | 0.681821 | 1.4:-58010277 | MS.gene39914:CDS |
| TGGTACGACTGGTTCTGTGG+TGG | 0.688675 | 1.4:-58009817 | MS.gene39914:CDS |
| GTGGGACAATAGGAGGAACA+AGG | 0.691913 | 1.4:-58009757 | MS.gene39914:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAAATTGAATAATAAAA+TGG | - | chr1.4:58008042-58008061 | MS.gene39914:intron | 10.0% |
| !! | ACTAAATTGAATAATAAAAT+GGG | - | chr1.4:58008043-58008062 | MS.gene39914:intron | 10.0% |
| !! | ATATGAAAAAAAATAATTTG+AGG | + | chr1.4:58007498-58007517 | None:intergenic | 10.0% |
| !! | TATGAAAAAAAATAATTTGA+GGG | + | chr1.4:58007497-58007516 | None:intergenic | 10.0% |
| !! | TATTAAAACTTATAATTAGA+TGG | - | chr1.4:58010175-58010194 | MS.gene39914:intron | 10.0% |
| !! | TCATATATACAATAAATAAA+TGG | - | chr1.4:58009683-58009702 | MS.gene39914:intron | 10.0% |
| !! | TCATTAATTCTTTAAATAAA+TGG | + | chr1.4:58008083-58008102 | None:intergenic | 10.0% |
| !!! | CAATTTTTTATAAAATGAAA+TGG | + | chr1.4:58010643-58010662 | None:intergenic | 10.0% |
| !!! | TTTTATTTATATAATGATCT+GGG | + | chr1.4:58009038-58009057 | None:intergenic | 10.0% |
| !!! | TTTTTATTTATATAATGATC+TGG | + | chr1.4:58009039-58009058 | None:intergenic | 10.0% |
| !! | AAAAATAAAAACAAAAACAC+TGG | - | chr1.4:58009491-58009510 | MS.gene39914:intron | 15.0% |
| !! | AAGAGATATTAAAATAATCT+TGG | + | chr1.4:58008714-58008733 | None:intergenic | 15.0% |
| !! | ACAATATTCAATTTACATAT+TGG | + | chr1.4:58008292-58008311 | None:intergenic | 15.0% |
| !! | TTTAAATAACTTATCCATTA+AGG | - | chr1.4:58008530-58008549 | MS.gene39914:intron | 15.0% |
| !!! | GAATAATTATAAGTTTTTAG+GGG | + | chr1.4:58010125-58010144 | None:intergenic | 15.0% |
| !!! | GGAATAATTATAAGTTTTTA+GGG | + | chr1.4:58010126-58010145 | None:intergenic | 15.0% |
| !!! | GTTTTTATTTTAAAAACTTG+AGG | - | chr1.4:58009359-58009378 | MS.gene39914:intron | 15.0% |
| !!! | TAATTTTTGCTTTGTTTTTT+TGG | - | chr1.4:58006577-58006596 | MS.gene39914:intron | 15.0% |
| !!! | TATCAATATGTTGATTTTTT+TGG | - | chr1.4:58007699-58007718 | MS.gene39914:intron | 15.0% |
| !!! | TGGAATAATTATAAGTTTTT+AGG | + | chr1.4:58008694-58008713 | None:intergenic | 15.0% |
| !!! | TTTTTTATAAAATGAAATGG+AGG | + | chr1.4:58010640-58010659 | None:intergenic | 15.0% |
| !! | AAAAAAAATAATTTGAGGGT+TGG | + | chr1.4:58007493-58007512 | None:intergenic | 20.0% |
| !! | AAGAGATATTAAAACAGTAT+TGG | + | chr1.4:58010147-58010166 | None:intergenic | 20.0% |
| !! | AAGTTGAATTAAATGTAAAG+TGG | - | chr1.4:58006819-58006838 | MS.gene39914:intron | 20.0% |
| !! | AGTTGAATTAAATGTAAAGT+GGG | - | chr1.4:58006820-58006839 | MS.gene39914:intron | 20.0% |
| !! | GAAAATTGAAGTAATAAAGA+AGG | - | chr1.4:58009966-58009985 | MS.gene39914:intron | 20.0% |
| !! | GCAAAAAAAATAAAATTAGG+AGG | + | chr1.4:58007548-58007567 | None:intergenic | 20.0% |
| !! | GGTGCAAAAAAAATAAAATT+AGG | + | chr1.4:58007551-58007570 | None:intergenic | 20.0% |
| !! | TATCTTCAAATTATCAATTC+TGG | - | chr1.4:58006924-58006943 | MS.gene39914:intron | 20.0% |
| !! | TATTACACTAATGAATTCTA+TGG | - | chr1.4:58007769-58007788 | MS.gene39914:intron | 20.0% |
| !! | TCATTAGTGTAATAACAAAA+CGG | + | chr1.4:58007763-58007782 | None:intergenic | 20.0% |
| !! | TTCAAAATGCAAAAACAATA+GGG | + | chr1.4:58007525-58007544 | None:intergenic | 20.0% |
| !! | TTTATATAGTCAAAATTGAG+TGG | - | chr1.4:58007737-58007756 | MS.gene39914:intron | 20.0% |
| !!! | AAAAATTTCTTTTCTGAACA+AGG | - | chr1.4:58008839-58008858 | MS.gene39914:intron | 20.0% |
| !!! | AAATTCTGTTCAAATTTTAC+AGG | + | chr1.4:58007018-58007037 | None:intergenic | 20.0% |
| !!! | AATTTTCTCATTAATGCAAA+AGG | + | chr1.4:58010217-58010236 | None:intergenic | 20.0% |
| !!! | AGAATTATCTGAAATTATGA+TGG | - | chr1.4:58009800-58009819 | MS.gene39914:CDS | 20.0% |
| !!! | ATTTTCTCATTAATGCAAAA+GGG | + | chr1.4:58010216-58010235 | None:intergenic | 20.0% |
| !!! | CTGAAAAGGTTTTTATTTTT+TGG | + | chr1.4:58010248-58010267 | None:intergenic | 20.0% |
| !!! | GAATTGATTTTGACATTATT+TGG | + | chr1.4:58006978-58006997 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTTAATGGCAGT+TGG | + | chr1.4:58009481-58009500 | None:intergenic | 20.0% |
| ! | AACAAAATCTTATTCATCAG+TGG | + | chr1.4:58010608-58010627 | None:intergenic | 25.0% |
| ! | AATTTATAGTTCTTCACGTT+TGG | - | chr1.4:58009242-58009261 | MS.gene39914:intron | 25.0% |
| ! | AGAAAAAGCTCAAAGTTATA+TGG | + | chr1.4:58007093-58007112 | None:intergenic | 25.0% |
| ! | AGAATTAACTCCAAATACAA+TGG | + | chr1.4:58007377-58007396 | None:intergenic | 25.0% |
| ! | ATCTATTTGAAAAGACCTTA+GGG | - | chr1.4:58010035-58010054 | MS.gene39914:intron | 25.0% |
| ! | ATGAAATGTTGTCTTTCTAA+GGG | - | chr1.4:58010885-58010904 | MS.gene39914:CDS | 25.0% |
| ! | CAAACAACAAACTTACTATA+AGG | - | chr1.4:58006550-58006569 | MS.gene39914:intron | 25.0% |
| ! | CATAAGTGGTTTATAGATTT+GGG | + | chr1.4:58009572-58009591 | None:intergenic | 25.0% |
| ! | GAAAAGCTTACGATAATAAT+AGG | - | chr1.4:58009853-58009872 | MS.gene39914:intron | 25.0% |
| ! | GTTCAAAATGCAAAAACAAT+AGG | + | chr1.4:58007526-58007545 | None:intergenic | 25.0% |
| ! | TATCTATTTGAAAAGACCTT+AGG | - | chr1.4:58010034-58010053 | MS.gene39914:intron | 25.0% |
| ! | TATTCATCAGTGGTTATAAA+CGG | + | chr1.4:58010598-58010617 | None:intergenic | 25.0% |
| ! | TTCAGTGCATAAAAAAGAAA+TGG | + | chr1.4:58009125-58009144 | None:intergenic | 25.0% |
| ! | TTCATACTTATCCAATATTG+CGG | - | chr1.4:58009093-58009112 | MS.gene39914:intron | 25.0% |
| !! | ATAAAAACCTTTTCAGAACA+AGG | - | chr1.4:58010252-58010271 | MS.gene39914:CDS | 25.0% |
| !! | TTTTCTCATTAATGCAAAAG+GGG | + | chr1.4:58010215-58010234 | None:intergenic | 25.0% |
| !!! | ACTGTTTTAATATCTCTTTC+TGG | - | chr1.4:58010149-58010168 | MS.gene39914:intron | 25.0% |
| !!! | TATATGATTTGTTCTGAACA+TGG | + | chr1.4:58009670-58009689 | None:intergenic | 25.0% |
| !!! | TCATTTCTAGAATGGTAAAA+AGG | + | chr1.4:58009524-58009543 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTGGATATGCAA+TGG | - | chr1.4:58007710-58007729 | MS.gene39914:intron | 25.0% |
| !!! | TTTTTTATGCACTGAAGTTT+AGG | - | chr1.4:58009129-58009148 | MS.gene39914:intron | 25.0% |
| AAAATGGGAGTTTGAATTTG+GGG | + | chr1.4:58006169-58006188 | None:intergenic | 30.0% | |
| AAAGCACATATCAAAAGTGA+AGG | - | chr1.4:58010357-58010376 | MS.gene39914:intron | 30.0% | |
| AAAGTTCTCATTAATGCAGA+AGG | + | chr1.4:58008802-58008821 | None:intergenic | 30.0% | |
| AAATATTAGACATGAGGATG+GGG | - | chr1.4:58010813-58010832 | MS.gene39914:CDS | 30.0% | |
| AACTGGAAATATTAGACATG+AGG | - | chr1.4:58010807-58010826 | MS.gene39914:CDS | 30.0% | |
| AAGTATCAAGAATGTATCGT+AGG | - | chr1.4:58007828-58007847 | MS.gene39914:intron | 30.0% | |
| AAGTTGAAATTTCTGTGGAT+TGG | + | chr1.4:58006212-58006231 | None:intergenic | 30.0% | |
| AATTAACACGAAACTCCATA+GGG | - | chr1.4:58007993-58008012 | MS.gene39914:intron | 30.0% | |
| AATTGAATGACAATGTGTTG+TGG | - | chr1.4:58006628-58006647 | MS.gene39914:intron | 30.0% | |
| AGACATTCGTAAAGTATGTT+TGG | - | chr1.4:58008199-58008218 | MS.gene39914:intron | 30.0% | |
| AGCTTCAATAGAATAGCTAA+CGG | - | chr1.4:58009916-58009935 | MS.gene39914:intron | 30.0% | |
| AGGCTAAAAATCAATTGTAG+AGG | - | chr1.4:58006885-58006904 | MS.gene39914:intron | 30.0% | |
| AGTATCAAGAATGTATCGTA+GGG | - | chr1.4:58007829-58007848 | MS.gene39914:intron | 30.0% | |
| AGTGCATAAAAAAGAAATGG+AGG | + | chr1.4:58009122-58009141 | None:intergenic | 30.0% | |
| ATCCAATATTATCGTTACCT+TGG | - | chr1.4:58010512-58010531 | MS.gene39914:CDS | 30.0% | |
| ATTGTGAAATAGTTGAGATG+CGG | - | chr1.4:58009314-58009333 | MS.gene39914:intron | 30.0% | |
| ATTTGAACAGAATTTACCAG+TGG | - | chr1.4:58007023-58007042 | MS.gene39914:intron | 30.0% | |
| CATGTCTAATATTTCCAGTT+GGG | + | chr1.4:58010807-58010826 | None:intergenic | 30.0% | |
| CCAAATCTATAAACCACTTA+TGG | - | chr1.4:58009570-58009589 | MS.gene39914:intron | 30.0% | |
| CCATAAGTGGTTTATAGATT+TGG | + | chr1.4:58009573-58009592 | None:intergenic | 30.0% | |
| CTCTAACCTATATGCAATTT+GGG | - | chr1.4:58007627-58007646 | MS.gene39914:intron | 30.0% | |
| CTTCAAATTATCAATTCTGG+AGG | - | chr1.4:58006927-58006946 | MS.gene39914:intron | 30.0% | |
| CTTGCATTATATTTGGTCAA+TGG | - | chr1.4:58010402-58010421 | MS.gene39914:intron | 30.0% | |
| GAAAATGGGAGTTTGAATTT+GGG | + | chr1.4:58006170-58006189 | None:intergenic | 30.0% | |
| GAAATATTAGACATGAGGAT+GGG | - | chr1.4:58010812-58010831 | MS.gene39914:CDS | 30.0% | |
| GAATGAAGAGAAAGTTGTTT+GGG | + | chr1.4:58007587-58007606 | None:intergenic | 30.0% | |
| GATACATTCTTGATACTTTG+TGG | + | chr1.4:58007826-58007845 | None:intergenic | 30.0% | |
| GATGAAATGTTGTCTTTCTA+AGG | - | chr1.4:58010884-58010903 | MS.gene39914:CDS | 30.0% | |
| GCGACAAAAATGAATTGATT+CGG | - | chr1.4:58006792-58006811 | MS.gene39914:intron | 30.0% | |
| GGTTATGAATTCAATTTCTC+AGG | - | chr1.4:58009987-58010006 | MS.gene39914:intron | 30.0% | |
| TAATGCAAGCTGCAAAATAT+TGG | + | chr1.4:58010391-58010410 | None:intergenic | 30.0% | |
| TATACCAAGAGATATGTGTT+CGG | - | chr1.4:58008121-58008140 | MS.gene39914:intron | 30.0% | |
| TCAGTGCATGAAAAATGAAA+TGG | + | chr1.4:58008430-58008449 | None:intergenic | 30.0% | |
| TCATGTCTAATATTTCCAGT+TGG | + | chr1.4:58010808-58010827 | None:intergenic | 30.0% | |
| TCTAACCTATATGCAATTTG+GGG | - | chr1.4:58007628-58007647 | MS.gene39914:intron | 30.0% | |
| TCTATTTGAAAAGACCTTAG+GGG | - | chr1.4:58010036-58010055 | MS.gene39914:intron | 30.0% | |
| TCTCTAACCTATATGCAATT+TGG | - | chr1.4:58007626-58007645 | MS.gene39914:intron | 30.0% | |
| TGAATGAAGAGAAAGTTGTT+TGG | + | chr1.4:58007588-58007607 | None:intergenic | 30.0% | |
| TGAATTTGGGGATGAAATTA+GGG | + | chr1.4:58006157-58006176 | None:intergenic | 30.0% | |
| TGCAATCTTTATCTGATTCT+TGG | - | chr1.4:58007901-58007920 | MS.gene39914:intron | 30.0% | |
| TGTTAACATGCCATTGTATT+TGG | - | chr1.4:58007364-58007383 | MS.gene39914:intron | 30.0% | |
| TTCATTATGTCTGATGACAA+TGG | - | chr1.4:58006735-58006754 | MS.gene39914:intron | 30.0% | |
| TTGAATTTGGGGATGAAATT+AGG | + | chr1.4:58006158-58006177 | None:intergenic | 30.0% | |
| TTGTCAATAAAACTGTGCTT+TGG | - | chr1.4:58010301-58010320 | MS.gene39914:CDS | 30.0% | |
| TTTCTTTATCTGGATCAACA+TGG | - | chr1.4:58010536-58010555 | MS.gene39914:CDS | 30.0% | |
| TTTGCAGCTTGCATTATATT+TGG | - | chr1.4:58010395-58010414 | MS.gene39914:intron | 30.0% | |
| TTTGTTTGTATGATATGTGC+TGG | - | chr1.4:58007945-58007964 | MS.gene39914:intron | 30.0% | |
| ! | AATGTAAAGTGGGTATTGTT+TGG | - | chr1.4:58006830-58006849 | MS.gene39914:intron | 30.0% |
| ! | AGTGAGTTGAACAATAATTG+AGG | - | chr1.4:58006865-58006884 | MS.gene39914:intron | 30.0% |
| ! | CATTGGGTTTCAAGTATTAT+CGG | - | chr1.4:58009614-58009633 | MS.gene39914:intron | 30.0% |
| ! | CCATTCTAGAAATGATACTT+AGG | - | chr1.4:58009529-58009548 | MS.gene39914:intron | 30.0% |
| ! | CCTAAGTATCATTTCTAGAA+TGG | + | chr1.4:58009532-58009551 | None:intergenic | 30.0% |
| ! | GAAATGATACTTAGGCTTTT+CGG | - | chr1.4:58009537-58009556 | MS.gene39914:intron | 30.0% |
| ! | GGGTGTATATGTTGTTTAAT+AGG | + | chr1.4:58009410-58009429 | None:intergenic | 30.0% |
| ! | GTGGATTCATTTGACATTTT+GGG | - | chr1.4:58006430-58006449 | MS.gene39914:intron | 30.0% |
| ! | TAGCTGACTCAATATAATAC+AGG | + | chr1.4:58008992-58009011 | None:intergenic | 30.0% |
| ! | TCATAAACTTGCTTCAAACA+AGG | + | chr1.4:58007871-58007890 | None:intergenic | 30.0% |
| ! | TCTTAATGGAAAAGGTACAA+AGG | + | chr1.4:58008902-58008921 | None:intergenic | 30.0% |
| ! | TTTAGAACATTAAACCTCGT+AGG | - | chr1.4:58008176-58008195 | MS.gene39914:intron | 30.0% |
| ! | TTTTTCATGCACTGAAGTTT+AGG | - | chr1.4:58008435-58008454 | MS.gene39914:intron | 30.0% |
| !! | AAAAGAACCTTGTTCTGAAA+AGG | + | chr1.4:58010262-58010281 | None:intergenic | 30.0% |
| !! | ACTTCAAGTTGAAATTTCTG+TGG | + | chr1.4:58006217-58006236 | None:intergenic | 30.0% |
| !! | ATCCATTAAGGATTAGTTTC+TGG | - | chr1.4:58008542-58008561 | MS.gene39914:intron | 30.0% |
| !! | GATACTATTGATTCTCTTGA+TGG | - | chr1.4:58006527-58006546 | MS.gene39914:intron | 30.0% |
| !! | GCTTTTTCTGTTATTGTTTC+AGG | - | chr1.4:58007104-58007123 | MS.gene39914:intron | 30.0% |
| !! | TGTGTTGTGGATTTTTGTTT+AGG | - | chr1.4:58006641-58006660 | MS.gene39914:intron | 30.0% |
| !!! | ATTTTTTAATGGCAGTTGGA+TGG | + | chr1.4:58009477-58009496 | None:intergenic | 30.0% |
| !!! | GGTTCTTTTGATTTCATTCT+TGG | - | chr1.4:58010273-58010292 | MS.gene39914:CDS | 30.0% |
| AAAACTGTGCTTTGGTACAT+TGG | - | chr1.4:58010309-58010328 | MS.gene39914:intron | 35.0% | |
| AAGTGGTTTATAGATTTGGG+TGG | + | chr1.4:58009569-58009588 | None:intergenic | 35.0% | |
| AGCAACTCCGTCAATTTAAT+CGG | - | chr1.4:58006311-58006330 | MS.gene39914:intron | 35.0% | |
| AGCAGCTGAATTTCATTGAT+AGG | - | chr1.4:58006673-58006692 | MS.gene39914:intron | 35.0% | |
| AGCCAAGGTAACGATAATAT+TGG | + | chr1.4:58010517-58010536 | None:intergenic | 35.0% | |
| ATACTTGAAACCCAATGCTA+TGG | + | chr1.4:58009611-58009630 | None:intergenic | 35.0% | |
| ATGAAATTTCAGGGGGTTTA+GGG | + | chr1.4:58006277-58006296 | None:intergenic | 35.0% | |
| ATGTAGTATCTACCTTTAGC+TGG | - | chr1.4:58007054-58007073 | MS.gene39914:intron | 35.0% | |
| CAATTAACACGAAACTCCAT+AGG | - | chr1.4:58007992-58008011 | MS.gene39914:intron | 35.0% | |
| CACAACACAGACATATCATT+AGG | + | chr1.4:58007655-58007674 | None:intergenic | 35.0% | |
| CACAATCTTCATAGCAAAAG+AGG | + | chr1.4:58008020-58008039 | None:intergenic | 35.0% | |
| CCAAAGGATGAGATTTATGT+CGG | - | chr1.4:58009189-58009208 | MS.gene39914:intron | 35.0% | |
| CCTTGTTCCATGAAATTTCA+GGG | + | chr1.4:58006286-58006305 | None:intergenic | 35.0% | |
| CTCCAGAAACTAATCCTTAA+TGG | + | chr1.4:58008547-58008566 | None:intergenic | 35.0% | |
| CTTCAATAGAATAGCTAACG+GGG | - | chr1.4:58009918-58009937 | MS.gene39914:intron | 35.0% | |
| CTTGTTCCATGAAATTTCAG+GGG | + | chr1.4:58006285-58006304 | None:intergenic | 35.0% | |
| GAATATTCAGTGTTCGTCAA+TGG | - | chr1.4:58009875-58009894 | MS.gene39914:intron | 35.0% | |
| GCTTCAATAGAATAGCTAAC+GGG | - | chr1.4:58009917-58009936 | MS.gene39914:intron | 35.0% | |
| GGAAAATGGGAGTTTGAATT+TGG | + | chr1.4:58006171-58006190 | None:intergenic | 35.0% | |
| GGAAATATTAGACATGAGGA+TGG | - | chr1.4:58010811-58010830 | MS.gene39914:CDS | 35.0% | |
| GTATCCTTGTGCTTAAAATC+AGG | + | chr1.4:58010734-58010753 | None:intergenic | 35.0% | |
| GTGCATGAAAAATGAAATGG+AGG | + | chr1.4:58008427-58008446 | None:intergenic | 35.0% | |
| GTTATAAACGGAGTTAGACA+TGG | + | chr1.4:58010586-58010605 | None:intergenic | 35.0% | |
| TAATACAGGCAGCAAGATAT+TGG | + | chr1.4:58008978-58008997 | None:intergenic | 35.0% | |
| TACTACATACTACAATCCAC+TGG | + | chr1.4:58007042-58007061 | None:intergenic | 35.0% | |
| TACTTGAAACCCAATGCTAT+GGG | + | chr1.4:58009610-58009629 | None:intergenic | 35.0% | |
| TATGATATGTGCTGGAAACA+TGG | - | chr1.4:58007953-58007972 | MS.gene39914:intron | 35.0% | |
| TATTGGAATTGTTCCCTTCA+CGG | + | chr1.4:58008961-58008980 | None:intergenic | 35.0% | |
| TCCAATTCCATCACCAATAA+TGG | - | chr1.4:58006239-58006258 | MS.gene39914:CDS | 35.0% | |
| TCCTTGTTCCATGAAATTTC+AGG | + | chr1.4:58006287-58006306 | None:intergenic | 35.0% | |
| TGCTTAAAATCAGGAGCTTT+GGG | + | chr1.4:58010725-58010744 | None:intergenic | 35.0% | |
| TGGAGTTTCGTGTTAATTGA+AGG | + | chr1.4:58007991-58008010 | None:intergenic | 35.0% | |
| TGGTATCTTCATTCGTTATG+TGG | + | chr1.4:58009650-58009669 | None:intergenic | 35.0% | |
| TGTAGTATCTACCTTTAGCT+GGG | - | chr1.4:58007055-58007074 | MS.gene39914:intron | 35.0% | |
| TGTTATTGTTTCAGGCAAGA+AGG | - | chr1.4:58007112-58007131 | MS.gene39914:intron | 35.0% | |
| TTCAATAGAATAGCTAACGG+GGG | - | chr1.4:58009919-58009938 | MS.gene39914:intron | 35.0% | |
| TTGGATGGAATTTAACAGCA+GGG | + | chr1.4:58009462-58009481 | None:intergenic | 35.0% | |
| TTGTTCCATGAAATTTCAGG+GGG | + | chr1.4:58006284-58006303 | None:intergenic | 35.0% | |
| ! | ATGCACTGAAGTTTAGGATT+AGG | - | chr1.4:58008441-58008460 | MS.gene39914:intron | 35.0% |
| ! | ATGTTGTTTAATAGGACCTC+AGG | + | chr1.4:58009402-58009421 | None:intergenic | 35.0% |
| ! | ATTTCTCAGGTGTTAAGTTG+AGG | - | chr1.4:58010000-58010019 | MS.gene39914:intron | 35.0% |
| ! | CGTGGATTCATTTGACATTT+TGG | - | chr1.4:58006429-58006448 | MS.gene39914:intron | 35.0% |
| ! | GAAGTTTAGGATTAGGAAGA+GGG | - | chr1.4:58008448-58008467 | MS.gene39914:intron | 35.0% |
| ! | GATTTTAAGCACAAGGATAC+TGG | - | chr1.4:58010734-58010753 | MS.gene39914:CDS | 35.0% |
| ! | TCTGAACAAGGTTTTTACGT+CGG | - | chr1.4:58008851-58008870 | MS.gene39914:intron | 35.0% |
| ! | TGAAGTTTAGGATTAGGAAG+AGG | - | chr1.4:58008447-58008466 | MS.gene39914:intron | 35.0% |
| ! | TGTTGTTTAATAGGACCTCA+GGG | + | chr1.4:58009401-58009420 | None:intergenic | 35.0% |
| ! | TTACCTTGGCTTTCTTTATC+TGG | - | chr1.4:58010526-58010545 | MS.gene39914:CDS | 35.0% |
| !! | AAGAGAGTGTTGTGGAAAAT+GGG | + | chr1.4:58006184-58006203 | None:intergenic | 35.0% |
| !! | ATCAGATTCATGTTTCTGGT+CGG | - | chr1.4:58006495-58006514 | MS.gene39914:intron | 35.0% |
| !! | GAAATTTCTGTGGATTGGTT+TGG | + | chr1.4:58006207-58006226 | None:intergenic | 35.0% |
| !! | GAGAAAGTTGTTTGGGTTTT+TGG | + | chr1.4:58007580-58007599 | None:intergenic | 35.0% |
| !! | GTTGTGGATTTTTGTTTAGG+TGG | - | chr1.4:58006644-58006663 | MS.gene39914:intron | 35.0% |
| !! | TCCATTATTGGTGATGGAAT+TGG | + | chr1.4:58006243-58006262 | None:intergenic | 35.0% |
| AAAAAGCGAAACCCAGCTAA+AGG | + | chr1.4:58007069-58007088 | None:intergenic | 40.0% | |
| AAAGCACATATCAACCGTGA+AGG | - | chr1.4:58008944-58008963 | MS.gene39914:intron | 40.0% | |
| AAATCAAACACCTTCCTTCC+GGG | - | chr1.4:58006354-58006373 | MS.gene39914:intron | 40.0% | |
| AAGCACATATCAACCGTGAA+GGG | - | chr1.4:58008945-58008964 | MS.gene39914:intron | 40.0% | |
| AAGGCGAGTTATGCTTCAAA+TGG | - | chr1.4:58007131-58007150 | MS.gene39914:intron | 40.0% | |
| AATGGAGGAAACCGCAATAT+TGG | + | chr1.4:58009107-58009126 | None:intergenic | 40.0% | |
| AGGTTTCCCTATTACAAGGT+TGG | - | chr1.4:58009160-58009179 | MS.gene39914:intron | 40.0% | |
| AGTGTTCGTCAATGGAAAAC+TGG | - | chr1.4:58009883-58009902 | MS.gene39914:intron | 40.0% | |
| AGTGTTTGCATGAGACATCT+GGG | - | chr1.4:58009727-58009746 | MS.gene39914:intron | 40.0% | |
| CAAGTCCCAACCTTGTAATA+GGG | + | chr1.4:58009169-58009188 | None:intergenic | 40.0% | |
| CATGAAATTTCAGGGGGTTT+AGG | + | chr1.4:58006278-58006297 | None:intergenic | 40.0% | |
| CCACAGTACAAGGTTTATGT+CGG | - | chr1.4:58008504-58008523 | MS.gene39914:intron | 40.0% | |
| CCCTGAAATTTCATGGAACA+AGG | - | chr1.4:58006283-58006302 | MS.gene39914:intron | 40.0% | |
| CCGACATAAATCTCATCCTT+TGG | + | chr1.4:58009192-58009211 | None:intergenic | 40.0% | |
| CTAAACCCCCTGAAATTTCA+TGG | - | chr1.4:58006276-58006295 | MS.gene39914:intron | 40.0% | |
| CTTATACCGGTCAAAATGGT+AGG | - | chr1.4:58010837-58010856 | MS.gene39914:CDS | 40.0% | |
| GAAATCAAACACCTTCCTTC+CGG | - | chr1.4:58006353-58006372 | MS.gene39914:intron | 40.0% | |
| GACGAAGCCGATTAAATTGA+CGG | + | chr1.4:58006321-58006340 | None:intergenic | 40.0% | |
| GAGGAAATCATTGAAAGCAG+TGG | + | chr1.4:58008408-58008427 | None:intergenic | 40.0% | |
| GATCCAGATAAAGAAAGCCA+AGG | + | chr1.4:58010532-58010551 | None:intergenic | 40.0% | |
| GCTTAAAATCAGGAGCTTTG+GGG | + | chr1.4:58010724-58010743 | None:intergenic | 40.0% | |
| GCTTCTCAACATGTTCAGAA+AGG | - | chr1.4:58006470-58006489 | MS.gene39914:intron | 40.0% | |
| GGTCATCAGATTCATGTTTC+TGG | - | chr1.4:58006491-58006510 | MS.gene39914:intron | 40.0% | |
| GGTTTCCCTATTACAAGGTT+GGG | - | chr1.4:58009161-58009180 | MS.gene39914:intron | 40.0% | |
| GTACATTGGCCAATAAGAAC+TGG | - | chr1.4:58010323-58010342 | MS.gene39914:intron | 40.0% | |
| GTATGATGCTGCTCCATTAT+TGG | + | chr1.4:58006255-58006274 | None:intergenic | 40.0% | |
| GTGCTTAAAATCAGGAGCTT+TGG | + | chr1.4:58010726-58010745 | None:intergenic | 40.0% | |
| GTGTCTACTGTGAAAGTAGA+GGG | + | chr1.4:58009432-58009451 | None:intergenic | 40.0% | |
| GTTGGATGGAATTTAACAGC+AGG | + | chr1.4:58009463-58009482 | None:intergenic | 40.0% | |
| GTTGTTTAATAGGACCTCAG+GGG | + | chr1.4:58009400-58009419 | None:intergenic | 40.0% | |
| TAGGACCCCAAATTGCATAT+AGG | + | chr1.4:58007636-58007655 | None:intergenic | 40.0% | |
| TAGTGTTTGCATGAGACATC+TGG | - | chr1.4:58009726-58009745 | MS.gene39914:intron | 40.0% | |
| TATGCTTCAAATGGTACGAC+TGG | - | chr1.4:58007140-58007159 | MS.gene39914:intron | 40.0% | |
| TGAAATAGTTGAGATGCGGA+AGG | - | chr1.4:58009318-58009337 | MS.gene39914:intron | 40.0% | |
| TGCAAGTAGCCAGTTCTTAT+TGG | + | chr1.4:58010335-58010354 | None:intergenic | 40.0% | |
| TGCGTCTTCACAAACATTTC+TGG | - | chr1.4:58010682-58010701 | MS.gene39914:CDS | 40.0% | |
| TGGATGGAATTTAACAGCAG+GGG | + | chr1.4:58009461-58009480 | None:intergenic | 40.0% | |
| TGGTAGGTTTCCCTATTACA+AGG | - | chr1.4:58009156-58009175 | MS.gene39914:intron | 40.0% | |
| TGTCTACTGTGAAAGTAGAG+GGG | + | chr1.4:58009431-58009450 | None:intergenic | 40.0% | |
| TGTGTCTACTGTGAAAGTAG+AGG | + | chr1.4:58009433-58009452 | None:intergenic | 40.0% | |
| TTAAATTGACGGAGTTGCTG+AGG | + | chr1.4:58006310-58006329 | None:intergenic | 40.0% | |
| ! | AGCTCCTGATTTTAAGCACA+AGG | - | chr1.4:58010727-58010746 | MS.gene39914:CDS | 40.0% |
| ! | CAGCTGACTCTTAATGGAAA+AGG | + | chr1.4:58008910-58008929 | None:intergenic | 40.0% |
| ! | CTGAAGTTTAGGACAATGGT+AGG | - | chr1.4:58009140-58009159 | MS.gene39914:intron | 40.0% |
| ! | CTTGTGCTCTTTTCCATAAG+TGG | + | chr1.4:58009586-58009605 | None:intergenic | 40.0% |
| ! | GCTAAGCTTTATGTTTGCAG+AGG | - | chr1.4:58008573-58008592 | MS.gene39914:intron | 40.0% |
| ! | GGGATGAAATTAGGGTTTTG+GGG | + | chr1.4:58006149-58006168 | None:intergenic | 40.0% |
| ! | GGGGATGAAATTAGGGTTTT+GGG | + | chr1.4:58006150-58006169 | None:intergenic | 40.0% |
| ! | TACAGTCAGCTGACTCTTAA+TGG | + | chr1.4:58008916-58008935 | None:intergenic | 40.0% |
| ! | TGCACTGAAGTTTAGGACAA+TGG | - | chr1.4:58009136-58009155 | MS.gene39914:intron | 40.0% |
| ! | TGGGGATGAAATTAGGGTTT+TGG | + | chr1.4:58006151-58006170 | None:intergenic | 40.0% |
| ! | TTTAGGATTAGGAAGAGGGT+AGG | - | chr1.4:58008452-58008471 | MS.gene39914:intron | 40.0% |
| !! | CATTTCTGGTAACTTCACAG+AGG | - | chr1.4:58010696-58010715 | MS.gene39914:CDS | 40.0% |
| !! | GAAGAGAGTGTTGTGGAAAA+TGG | + | chr1.4:58006185-58006204 | None:intergenic | 40.0% |
| !! | GGATGAAATTAGGGTTTTGG+GGG | + | chr1.4:58006148-58006167 | None:intergenic | 40.0% |
| !! | TCTACTAGCCTTTCAATCAG+TGG | - | chr1.4:58007435-58007454 | MS.gene39914:intron | 40.0% |
| !! | TTGCGAAGCGTTTTTCTTGA+CGG | + | chr1.4:58006405-58006424 | None:intergenic | 40.0% |
| AAAACGCTTCGCAAATGTCG+TGG | - | chr1.4:58006411-58006430 | MS.gene39914:intron | 45.0% | |
| AAAGGCTAGTAGAAAGAGCG+TGG | + | chr1.4:58007428-58007447 | None:intergenic | 45.0% | |
| AAGCTTTCTTTGCCAACCCA+GGG | - | chr1.4:58007183-58007202 | MS.gene39914:intron | 45.0% | |
| AAGTCCTAAGCCTAGAAACC+GGG | + | chr1.4:58008481-58008500 | None:intergenic | 45.0% | |
| AATTACACTGACCTCCCTTG+AGG | + | chr1.4:58010101-58010120 | None:intergenic | 45.0% | |
| AGCACAAGACCCATAGCATT+GGG | - | chr1.4:58009598-58009617 | MS.gene39914:intron | 45.0% | |
| AGTCCAAGCAACAACTTTCC+CGG | + | chr1.4:58006375-58006394 | None:intergenic | 45.0% | |
| ATCTGCGCTCACCATATCTA+CGG | + | chr1.4:58010867-58010886 | None:intergenic | 45.0% | |
| CAAGTCCTAAGCCTAGAAAC+CGG | + | chr1.4:58008482-58008501 | None:intergenic | 45.0% | |
| CATAGCAAAAGAGGTCCCTA+TGG | + | chr1.4:58008011-58008030 | None:intergenic | 45.0% | |
| CCGACATAAACCTTGTACTG+TGG | + | chr1.4:58008507-58008526 | None:intergenic | 45.0% | |
| CTTTACGAATGTCTCCTACG+AGG | + | chr1.4:58008193-58008212 | None:intergenic | 45.0% | |
| GAGTATGCAGTATGCCAACA+GGG | + | chr1.4:58008780-58008799 | None:intergenic | 45.0% | |
| GCAAGTCCCAACCTTGTAAT+AGG | + | chr1.4:58009170-58009189 | None:intergenic | 45.0% | |
| GGTTGTTTATACCTCAAGGG+AGG | - | chr1.4:58010087-58010106 | MS.gene39914:intron | 45.0% | |
| GTAGACACTAATCTCCCCTA+AGG | + | chr1.4:58010053-58010072 | None:intergenic | 45.0% | |
| GTCTACTGTGAAAGTAGAGG+GGG | + | chr1.4:58009430-58009449 | None:intergenic | 45.0% | |
| GTTGCCGAACACATATCTCT+TGG | + | chr1.4:58008128-58008147 | None:intergenic | 45.0% | |
| TGCTGCTCCATTATTGGTGA+TGG | + | chr1.4:58006249-58006268 | None:intergenic | 45.0% | |
| ! | ATGAGGATGGGGTCTTATAC+CGG | - | chr1.4:58010824-58010843 | MS.gene39914:CDS | 45.0% |
| ! | GGGTCTTATACCGGTCAAAA+TGG | - | chr1.4:58010833-58010852 | MS.gene39914:CDS | 45.0% |
| ! | TAGTAGAAAGAGCGTGGTTG+AGG | + | chr1.4:58007422-58007441 | None:intergenic | 45.0% |
| !! | AAATGGTACGACTGGTTCTG+TGG | - | chr1.4:58007148-58007167 | MS.gene39914:intron | 45.0% |
| !! | AATTACACTGACTTCCCCTG+AGG | - | chr1.4:58009383-58009402 | MS.gene39914:intron | 45.0% |
| !! | ACTAGCCTTTCAATCAGTGG+CGG | - | chr1.4:58007438-58007457 | MS.gene39914:intron | 45.0% |
| !! | CTCAGGTGTTAAGTTGAGGA+GGG | - | chr1.4:58010004-58010023 | MS.gene39914:intron | 45.0% |
| !! | CTGGTTCTGTGGTGGAATTA+TGG | - | chr1.4:58007159-58007178 | MS.gene39914:intron | 45.0% |
| !! | GAAGGTGTTTGATTTCGACC+GGG | + | chr1.4:58006349-58006368 | None:intergenic | 45.0% |
| !! | GGAAGGTGTTTGATTTCGAC+CGG | + | chr1.4:58006350-58006369 | None:intergenic | 45.0% |
| !! | TCTCAGGTGTTAAGTTGAGG+AGG | - | chr1.4:58010003-58010022 | MS.gene39914:intron | 45.0% |
| !! | TGGTTTGGAAGAGAGTGTTG+TGG | + | chr1.4:58006192-58006211 | None:intergenic | 45.0% |
| !!! | ATTAGGGTTTTGGGGGAAAG+TGG | + | chr1.4:58006141-58006160 | None:intergenic | 45.0% |
| !!! | TGTTTGGGTTTTTGGCTAGC+TGG | + | chr1.4:58007572-58007591 | None:intergenic | 45.0% |
| !! | TTGAATATAATATTATTATA+AGG | - | chr1.4:58008264-58008283 | MS.gene39914:intron | 5.0% |
| !!! | TTTTTGTTTTTATTTTTTAA+TGG | + | chr1.4:58009488-58009507 | None:intergenic | 5.0% |
| AAATCGAACCCCCTGATCCA+AGG | - | chr1.4:58008371-58008390 | MS.gene39914:intron | 50.0% | |
| AATCGAACCCCCTGATCCAA+GGG | - | chr1.4:58008372-58008391 | MS.gene39914:intron | 50.0% | |
| ACAAGGTTGGGACTTGCCAA+AGG | - | chr1.4:58009173-58009192 | MS.gene39914:intron | 50.0% | |
| ACCATGGGTCAAATCCCAAC+TGG | - | chr1.4:58010790-58010809 | MS.gene39914:CDS | 50.0% | |
| AGCTTTCTTTGCCAACCCAG+GGG | - | chr1.4:58007184-58007203 | MS.gene39914:intron | 50.0% | |
| AGGATACTGGAGAAGCTCTG+TGG | - | chr1.4:58010747-58010766 | MS.gene39914:CDS | 50.0% | |
| AGTTGGGATTTGACCCATGG+TGG | + | chr1.4:58010791-58010810 | None:intergenic | 50.0% | |
| ATGGTAGATCCACTCCACCA+TGG | - | chr1.4:58010774-58010793 | MS.gene39914:CDS | 50.0% | |
| CAACAACTTTCCCGGAAGGA+AGG | + | chr1.4:58006367-58006386 | None:intergenic | 50.0% | |
| CAAGCAACAACTTTCCCGGA+AGG | + | chr1.4:58006371-58006390 | None:intergenic | 50.0% | |
| CAAGCTTTCTTTGCCAACCC+AGG | - | chr1.4:58007182-58007201 | MS.gene39914:intron | 50.0% | |
| CAGTATGCCAACAGGGTTGA+CGG | + | chr1.4:58008773-58008792 | None:intergenic | 50.0% | |
| CTTCCGGGAAAGTTGTTGCT+TGG | - | chr1.4:58006369-58006388 | MS.gene39914:intron | 50.0% | |
| GAGCACAAGACCCATAGCAT+TGG | - | chr1.4:58009597-58009616 | MS.gene39914:intron | 50.0% | |
| GGAGTATGCAGTATGCCAAC+AGG | + | chr1.4:58008781-58008800 | None:intergenic | 50.0% | |
| GTGGGACAATAGGAGGAACA+AGG | - | chr1.4:58007211-58007230 | MS.gene39914:intron | 50.0% | |
| TCCAGTTGGGATTTGACCCA+TGG | + | chr1.4:58010794-58010813 | None:intergenic | 50.0% | |
| TCTGCGCTCACCATATCTAC+GGG | + | chr1.4:58010866-58010885 | None:intergenic | 50.0% | |
| TCTTGATCATGTGACCGCAC+CGG | + | chr1.4:58006708-58006727 | None:intergenic | 50.0% | |
| TGGTAGATCCACTCCACCAT+GGG | - | chr1.4:58010775-58010794 | MS.gene39914:CDS | 50.0% | |
| TGGTAGGATGCCCGTAGATA+TGG | - | chr1.4:58010853-58010872 | MS.gene39914:CDS | 50.0% | |
| ! | GGAGAAGCTCTGTGGATTGA+TGG | - | chr1.4:58010755-58010774 | MS.gene39914:CDS | 50.0% |
| !! | AGGTGTTAAGTTGAGGAGGG+AGG | - | chr1.4:58010007-58010026 | MS.gene39914:intron | 50.0% |
| !! | GGGCATCCTACCATTTTGAC+CGG | + | chr1.4:58010846-58010865 | None:intergenic | 50.0% |
| AGGACTTGCGCCACAGTACA+AGG | - | chr1.4:58008494-58008513 | MS.gene39914:intron | 55.0% | |
| CAAACAGCCGTCAACCCTGT+TGG | - | chr1.4:58008763-58008782 | MS.gene39914:intron | 55.0% | |
| CATTGATAGGAGTGACGCGC+CGG | - | chr1.4:58006686-58006705 | MS.gene39914:intron | 55.0% | |
| TAGGAAGAGGGTAGGTTGCC+CGG | - | chr1.4:58008460-58008479 | MS.gene39914:intron | 55.0% | |
| TATTGTCCCACCACTCCCCT+GGG | + | chr1.4:58007202-58007221 | None:intergenic | 55.0% | |
| TGCATCCCCTCACCACAATG+TGG | + | chr1.4:58007466-58007485 | None:intergenic | 55.0% | |
| TTGAAAGCAGTGGCGTTGCC+AGG | + | chr1.4:58008398-58008417 | None:intergenic | 55.0% | |
| ! | AATCGGCTTCGTCGCAAACC+CGG | - | chr1.4:58006328-58006347 | MS.gene39914:intron | 55.0% |
| ! | GGATTTGACCCATGGTGGAG+TGG | + | chr1.4:58010786-58010805 | None:intergenic | 55.0% |
| ! | GTTGCCCGGTTTCTAGGCTT+AGG | - | chr1.4:58008474-58008493 | MS.gene39914:intron | 55.0% |
| ! | TGGCTCCGCCACTGATTGAA+AGG | + | chr1.4:58007446-58007465 | None:intergenic | 55.0% |
| !! | TGGTACGACTGGTTCTGTGG+TGG | - | chr1.4:58007151-58007170 | MS.gene39914:intron | 55.0% |
| CGGAGCCACATTGTGGTGAG+GGG | - | chr1.4:58007458-58007477 | MS.gene39914:intron | 60.0% | |
| CTATTGTCCCACCACTCCCC+TGG | + | chr1.4:58007203-58007222 | None:intergenic | 60.0% | |
| GCGGAGCCACATTGTGGTGA+GGG | - | chr1.4:58007457-58007476 | MS.gene39914:intron | 60.0% | |
| GGGTAGGTTGCCCGGTTTCT+AGG | - | chr1.4:58008468-58008487 | MS.gene39914:intron | 60.0% | |
| GTTGCCAGGCCCTTGGATCA+GGG | + | chr1.4:58008384-58008403 | None:intergenic | 60.0% | |
| TCTTTGCCAACCCAGGGGAG+TGG | - | chr1.4:58007189-58007208 | MS.gene39914:intron | 60.0% | |
| TTGCCAGGCCCTTGGATCAG+GGG | + | chr1.4:58008383-58008402 | None:intergenic | 60.0% | |
| ! | CAGGGGAGTGGTGGGACAAT+AGG | - | chr1.4:58007201-58007220 | MS.gene39914:intron | 60.0% |
| ! | GGGAGTGGTGGGACAATAGG+AGG | - | chr1.4:58007204-58007223 | MS.gene39914:intron | 60.0% |
| ! | TCAGTGGCGGAGCCACATTG+TGG | - | chr1.4:58007451-58007470 | MS.gene39914:intron | 60.0% |
| AACCCCCTGATCCAAGGGCC+TGG | - | chr1.4:58008377-58008396 | MS.gene39914:intron | 65.0% | |
| CGTTGCCAGGCCCTTGGATC+AGG | + | chr1.4:58008385-58008404 | None:intergenic | 65.0% | |
| GGCGGAGCCACATTGTGGTG+AGG | - | chr1.4:58007456-58007475 | MS.gene39914:intron | 65.0% | |
| TGCCAACCCAGGGGAGTGGT+GGG | - | chr1.4:58007193-58007212 | MS.gene39914:intron | 65.0% | |
| TGCCAGGCCCTTGGATCAGG+GGG | + | chr1.4:58008382-58008401 | None:intergenic | 65.0% | |
| TTGCCAACCCAGGGGAGTGG+TGG | - | chr1.4:58007192-58007211 | MS.gene39914:intron | 65.0% | |
| ! | ATAGGAGTGACGCGCCGGTG+CGG | - | chr1.4:58006691-58006710 | MS.gene39914:intron | 65.0% |
| CAGTGGCGTTGCCAGGCCCT+TGG | + | chr1.4:58008391-58008410 | None:intergenic | 70.0% | |
| GTCCCACCACTCCCCTGGGT+TGG | + | chr1.4:58007198-58007217 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 58006086 | 58010904 | 58006086 | ID=MS.gene39914 |
| chr1.4 | mRNA | 58006086 | 58010904 | 58006086 | ID=MS.gene39914.t1;Parent=MS.gene39914 |
| chr1.4 | exon | 58010419 | 58010904 | 58010419 | ID=MS.gene39914.t1.exon1;Parent=MS.gene39914.t1 |
| chr1.4 | CDS | 58010419 | 58010904 | 58010419 | ID=cds.MS.gene39914.t1;Parent=MS.gene39914.t1 |
| chr1.4 | exon | 58010234 | 58010327 | 58010234 | ID=MS.gene39914.t1.exon2;Parent=MS.gene39914.t1 |
| chr1.4 | CDS | 58010234 | 58010327 | 58010234 | ID=cds.MS.gene39914.t1;Parent=MS.gene39914.t1 |
| chr1.4 | exon | 58009758 | 58009864 | 58009758 | ID=MS.gene39914.t1.exon3;Parent=MS.gene39914.t1 |
| chr1.4 | CDS | 58009758 | 58009864 | 58009758 | ID=cds.MS.gene39914.t1;Parent=MS.gene39914.t1 |
| chr1.4 | exon | 58006086 | 58006274 | 58006086 | ID=MS.gene39914.t1.exon4;Parent=MS.gene39914.t1 |
| chr1.4 | CDS | 58006086 | 58006274 | 58006086 | ID=cds.MS.gene39914.t1;Parent=MS.gene39914.t1 |
| Gene Sequence |
| Protein sequence |
