AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40100.t1 MTR_4g092800 93.434 198 4 1 1 198 1 189 7.61e-134 373
MS.gene40100.t1 MTR_2g020930 78.358 134 29 0 65 198 2 135 1.54e-79 233
MS.gene40100.t1 MTR_2g020950 74.627 134 33 1 65 198 2 134 3.98e-72 215
MS.gene40100.t1 MTR_2g020900 59.843 127 50 1 72 198 20 145 4.28e-54 169
MS.gene40100.t1 MTR_8g461030 45.600 125 63 2 74 195 80 202 7.35e-33 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40100.t1 AT4G21860 78.767 146 31 0 52 197 54 199 1.57e-85 251
MS.gene40100.t1 AT4G21860 78.767 146 31 0 52 197 54 199 1.57e-85 251
MS.gene40100.t1 AT4G21860 78.767 146 31 0 52 197 54 199 1.57e-85 251
MS.gene40100.t1 AT4G04800 76.596 141 33 0 58 198 34 174 7.07e-80 236
MS.gene40100.t1 AT4G04830 77.612 134 30 0 65 198 2 135 9.36e-78 229
MS.gene40100.t1 AT4G04810 76.378 127 30 0 71 197 8 134 9.10e-73 216
MS.gene40100.t1 AT4G21850 68.116 138 44 0 61 198 5 142 7.95e-72 214
MS.gene40100.t1 AT4G21840 68.085 141 43 1 60 198 1 141 7.42e-71 212
MS.gene40100.t1 AT4G21830 66.187 139 47 0 60 198 1 139 3.61e-69 207
MS.gene40100.t1 AT4G21830 69.231 130 40 0 69 198 13 142 4.11e-67 202
MS.gene40100.t1 AT4G04840 65.414 133 46 0 64 196 17 149 1.54e-66 201
MS.gene40100.t1 AT4G04830 70.149 134 30 1 65 198 2 125 1.58e-66 200
MS.gene40100.t1 AT4G21860 72.917 96 26 0 52 147 54 149 3.57e-49 158
MS.gene40100.t1 AT4G04810 80.519 77 15 0 71 147 8 84 1.52e-43 141
MS.gene40100.t1 AT4G21850 66.667 87 29 0 61 147 5 91 8.93e-42 137
MS.gene40100.t1 AT1G53670 44.286 140 64 3 66 193 57 194 7.89e-34 119
MS.gene40100.t1 AT1G53670 40.714 140 62 4 66 193 57 187 1.67e-27 103

Find 78 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATTCTTCCTCCGATTTC+TGG 0.041403 4.3:-21363404 None:intergenic
GCCTTCTATGAGGGTGTTCC+TGG 0.207845 4.3:+21366282 MS.gene40100:CDS
GGAGAATATGACAAATTCTT+TGG 0.249999 4.3:+21366177 MS.gene40100:CDS
GGGTGGGGTGAAGGTGAATT+TGG 0.259093 4.3:-21363289 None:intergenic
ATTTCTATCCTCATTCCATC+TGG 0.297903 4.3:-21366442 None:intergenic
CATCTCGGTCATGTATTTAA+AGG 0.300561 4.3:+21366487 MS.gene40100:CDS
TTGTCATATTCTCCTGTTCC+AGG 0.323050 4.3:-21366168 None:intergenic
GAGAATATGACAAATTCTTT+GGG 0.337073 4.3:+21366178 MS.gene40100:CDS
CATTGTAAATAACTAGGAAT+TGG 0.348681 4.3:-21366578 None:intergenic
GACACAATGGCGTTCGTTCG+TGG 0.375923 4.3:-21366527 None:intergenic
TCTACAGTTGTGCAGGTTGC+GGG 0.382998 4.3:+21366208 MS.gene40100:CDS
TCAACAACAAAATTCAATTC+CGG 0.394212 4.3:+21366246 MS.gene40100:CDS
GAGAGAGTTGGGTGGGGTGA+AGG 0.399554 4.3:-21363298 None:intergenic
ACAAAATTCAATTCCGGTTG+TGG 0.401214 4.3:+21366252 MS.gene40100:CDS
TCCTGGCTCGGTCCAGAAAT+CGG 0.412246 4.3:+21363392 MS.gene40100:CDS
GTCTACAGTTGTGCAGGTTG+CGG 0.417871 4.3:+21366207 MS.gene40100:CDS
TCCGATTTCTGGACCGAGCC+AGG 0.422097 4.3:-21363393 None:intergenic
TCCAGGAACACCCTCATAGA+AGG 0.426613 4.3:-21366283 None:intergenic
CTCAGAATTCGAAACTGCTC+AGG 0.426783 4.3:-21363441 None:intergenic
GAGATGGTAGGGAGAGAGTT+GGG 0.431155 4.3:-21363309 None:intergenic
ATGTCTGCTGCACCTACTCC+TGG 0.438702 4.3:+21363375 MS.gene40100:CDS
TTGGAGTTGAAGAGAAAGGT+AGG 0.444884 4.3:-21363270 None:intergenic
GTTAGAACAAATTGAGGAGA+TGG 0.444988 4.3:-21363247 None:intergenic
ACAAATTGAGGAGATGGGTT+TGG 0.448728 4.3:-21363241 None:intergenic
TGCTGCACCTACTCCTGGCT+CGG 0.454251 4.3:+21363380 MS.gene40100:CDS
ATCCTCATTCCATCTGGGTC+CGG 0.459799 4.3:-21366436 None:intergenic
GAAGGCTGGCCAGCCACAAC+CGG 0.459992 4.3:-21366265 None:intergenic
TTTCTATCCTCATTCCATCT+GGG 0.463849 4.3:-21366441 None:intergenic
GATGGGTTTGGTGACGTTGA+GGG 0.465319 4.3:-21363229 None:intergenic
AATTCAATTCCGGTTGTGGC+TGG 0.467338 4.3:+21366256 MS.gene40100:CDS
TTATCAAGGTACCCTGGAAC+AGG 0.467778 4.3:+21366156 MS.gene40100:intron
AAATAACATGTGCTGCTTGT+GGG 0.473497 4.3:+21366461 MS.gene40100:CDS
GAGGGAGTCTACAGTTGTGC+AGG 0.478161 4.3:+21366201 MS.gene40100:CDS
TCCAGAAATCGGAGGAAGAA+TGG 0.490874 4.3:+21363403 MS.gene40100:CDS
AGGAGTAGGTGCAGCAGACA+TGG 0.492353 4.3:-21363373 None:intergenic
GGAGATGGTAGGGAGAGAGT+TGG 0.494986 4.3:-21363310 None:intergenic
GAATTTGGAGTTGAAGAGAA+AGG 0.496737 4.3:-21363274 None:intergenic
TTAGAACAAATTGAGGAGAT+GGG 0.498670 4.3:-21363246 None:intergenic
TGGTAGGGAGAGAGTTGGGT+GGG 0.499556 4.3:-21363305 None:intergenic
TGGAGTTGAAGAGAAAGGTA+GGG 0.502554 4.3:-21363269 None:intergenic
ATGGTAGGGAGAGAGTTGGG+TGG 0.512379 4.3:-21363306 None:intergenic
GTAAATAACTAGGAATTGGC+TGG 0.513940 4.3:-21366574 None:intergenic
AGATGGGTTTGGTGACGTTG+AGG 0.516062 4.3:-21363230 None:intergenic
ACACAATGGCGTTCGTTCGT+GGG 0.518853 4.3:-21366526 None:intergenic
TTTCGAATTCTGAGGCAGAA+AGG 0.526917 4.3:+21363450 MS.gene40100:CDS
TTTGTTGTTGACTTGTAGAG+TGG 0.535127 4.3:-21366234 None:intergenic
ACCACGCTTCGGCTGACGAA+TGG 0.535443 4.3:-21363331 None:intergenic
TGGCTGGCCAGCCTTCTATG+AGG 0.541767 4.3:+21366272 MS.gene40100:CDS
GGTAGGGTTAGAACAAATTG+AGG 0.542736 4.3:-21363253 None:intergenic
GGTCATGTATTTAAAGGTGA+AGG 0.544366 4.3:+21366493 MS.gene40100:CDS
GTGACGTTGAGGGAAGAAAG+AGG 0.544790 4.3:-21363219 None:intergenic
TATGACAAATTCTTTGGGGA+GGG 0.549093 4.3:+21366183 MS.gene40100:CDS
GGTAGGGAGAGAGTTGGGTG+GGG 0.550203 4.3:-21363304 None:intergenic
CCACCGCGAAAACCACGCTT+CGG 0.552502 4.3:-21363342 None:intergenic
GGCTGGCCAGCCTTCTATGA+GGG 0.553211 4.3:+21366273 MS.gene40100:CDS
ACGTGGCGGTTTATAGCTCC+AGG 0.554221 4.3:-21366300 None:intergenic
TGTCATATTCTCCTGTTCCA+GGG 0.557941 4.3:-21366167 None:intergenic
TGGCGTTCGTTCGTGGGTGT+CGG 0.560916 4.3:-21366520 None:intergenic
AGATGACTGTGAATATACTA+AGG 0.565635 4.3:+21363190 None:intergenic
TCCATTCGTCAGCCGAAGCG+TGG 0.570636 4.3:+21363330 MS.gene40100:CDS
GGCTGACGAATGGAGATGGT+AGG 0.572122 4.3:-21363321 None:intergenic
CTTCGGCTGACGAATGGAGA+TGG 0.572282 4.3:-21363325 None:intergenic
GTATTATTATCAAGGTACCC+TGG 0.575400 4.3:+21366150 MS.gene40100:intron
TCAGAATTCGAAACTGCTCA+GGG 0.577261 4.3:-21363440 None:intergenic
GGAACACCCTCATAGAAGGC+TGG 0.578117 4.3:-21366279 None:intergenic
GAAATAACATGTGCTGCTTG+TGG 0.579814 4.3:+21366460 MS.gene40100:CDS
AGCCGGACCCAGATGGAATG+AGG 0.581127 4.3:+21366434 MS.gene40100:intron
AATAACATGTGCTGCTTGTG+GGG 0.586603 4.3:+21366462 MS.gene40100:CDS
ATATGACAAATTCTTTGGGG+AGG 0.589338 4.3:+21366182 MS.gene40100:CDS
CACCACCAGCCGGACCCAGA+TGG 0.591335 4.3:+21366427 MS.gene40100:intron
CTGAGCAGTTTCGAATTCTG+AGG 0.595443 4.3:+21363442 MS.gene40100:CDS
GCTGACGAATGGAGATGGTA+GGG 0.596509 4.3:-21363320 None:intergenic
TTCTGGACCGAGCCAGGAGT+AGG 0.614503 4.3:-21363387 None:intergenic
GTGAAATGCTATTGACACAA+TGG 0.617327 4.3:-21366540 None:intergenic
AGAATATGACAAATTCTTTG+GGG 0.674356 4.3:+21366179 MS.gene40100:CDS
TGGCTCGGTCCAGAAATCGG+AGG 0.678535 4.3:+21363395 MS.gene40100:CDS
ATAACATGTGCTGCTTGTGG+GGG 0.687021 4.3:+21366463 MS.gene40100:CDS
CAGAATTCGAAACTGCTCAG+GGG 0.702893 4.3:-21363439 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTAAATATGATAGT+GGG - chr4.3:21365780-21365799 None:intergenic 10.0%
!! TATATAATTAAATATGATAG+TGG - chr4.3:21365781-21365800 None:intergenic 10.0%
!!! ACTTAATTGATTTTAAATTT+TGG - chr4.3:21364767-21364786 None:intergenic 10.0%
!!! ATTAGTTTTTTTGAAATAAA+TGG + chr4.3:21364974-21364993 MS.gene40100:intron 10.0%
!!! TTAGTTTTTTTGAAATAAAT+GGG + chr4.3:21364975-21364994 MS.gene40100:intron 10.0%
!! TCTAACATGATAATATTAAT+GGG + chr4.3:21365653-21365672 MS.gene40100:intron 15.0%
!! TTCTAACATGATAATATTAA+TGG + chr4.3:21365652-21365671 MS.gene40100:intron 15.0%
!!! ATGATTTTGTCATATTAAAT+TGG + chr4.3:21365877-21365896 MS.gene40100:intron 15.0%
!!! TAGTTTTTTTGAAATAAATG+GGG + chr4.3:21364976-21364995 MS.gene40100:intron 15.0%
!!! TTTGTTTATAATTTTTTTGG+AGG + chr4.3:21365811-21365830 MS.gene40100:intron 15.0%
!! AAAAATTGTCCCAAAATATA+TGG + chr4.3:21364246-21364265 MS.gene40100:intron 20.0%
!! AAATAATGTGATACAGAAAA+TGG - chr4.3:21365125-21365144 None:intergenic 20.0%
!! AATATATTAGCACAAGAAAT+GGG - chr4.3:21364584-21364603 None:intergenic 20.0%
!! ATTAACATATGGAGATATAA+GGG + chr4.3:21365308-21365327 MS.gene40100:intron 20.0%
!! TAAACATGCAATAAATTTGT+TGG + chr4.3:21365583-21365602 MS.gene40100:intron 20.0%
!! TATTAATTAGAGTGTAGAAT+TGG - chr4.3:21364310-21364329 None:intergenic 20.0%
!! TATTATAACATTTAAGTCTG+TGG + chr4.3:21365040-21365059 MS.gene40100:intron 20.0%
!! TTTATTATGGCTTAATGAAA+TGG + chr4.3:21363727-21363746 MS.gene40100:intron 20.0%
!! TTTCATAGTACTATATTACA+TGG - chr4.3:21363688-21363707 None:intergenic 20.0%
!!! ACTTTAACTTCATTTTCTAA+AGG + chr4.3:21363794-21363813 MS.gene40100:intron 20.0%
!!! ATATTTTGCAAATATACATG+GGG + chr4.3:21364664-21364683 MS.gene40100:intron 20.0%
!!! ATCAAAAAGCTCAATTATTT+TGG + chr4.3:21364494-21364513 MS.gene40100:intron 20.0%
!!! ATGTTTTGGTATTATTATCA+AGG + chr4.3:21366142-21366161 MS.gene40100:intron 20.0%
!!! CATATTAAATTGGTAATCTT+AGG + chr4.3:21365887-21365906 MS.gene40100:intron 20.0%
!!! CATATTTTGCAAATATACAT+GGG + chr4.3:21364663-21364682 MS.gene40100:intron 20.0%
!!! TATATCCTTTTCCATTTAAA+GGG - chr4.3:21365284-21365303 None:intergenic 20.0%
!!! TCAAAAAGCTCAATTATTTT+GGG + chr4.3:21364495-21364514 MS.gene40100:intron 20.0%
!!! TGAAACACATAAATTTTATC+AGG - chr4.3:21366409-21366428 None:intergenic 20.0%
!!! TTTCACATGTTATATCTTTT+TGG + chr4.3:21365939-21365958 MS.gene40100:intron 20.0%
! AAAGGTGATTAATATTGCAT+TGG - chr4.3:21364285-21364304 None:intergenic 25.0%
! AGAATATGACAAATTCTTTG+GGG + chr4.3:21366179-21366198 MS.gene40100:CDS 25.0%
! ATATAGTACTATGAAAACCA+TGG + chr4.3:21363692-21363711 MS.gene40100:intron 25.0%
! ATATTAAACTCAAACAGTTC+AGG - chr4.3:21366000-21366019 None:intergenic 25.0%
! ATTACATATGCTCAATTATG+CGG - chr4.3:21365154-21365173 None:intergenic 25.0%
! CAATATATTAGCACAAGAAA+TGG - chr4.3:21364585-21364604 None:intergenic 25.0%
! GAGAATATGACAAATTCTTT+GGG + chr4.3:21366178-21366197 MS.gene40100:CDS 25.0%
! GATTAACATATGGAGATATA+AGG + chr4.3:21365307-21365326 MS.gene40100:intron 25.0%
! GGTAAGAAAAAAATTCTGAA+TGG - chr4.3:21364563-21364582 None:intergenic 25.0%
! TAGAGTTACAAAAAAAGTAG+AGG - chr4.3:21364903-21364922 None:intergenic 25.0%
! TATCATGTTAGAAGATTTAG+TGG - chr4.3:21365645-21365664 None:intergenic 25.0%
! TCAACAACAAAATTCAATTC+CGG + chr4.3:21366246-21366265 MS.gene40100:CDS 25.0%
! TCAATTAAGTACAAACACTA+TGG + chr4.3:21364777-21364796 MS.gene40100:intron 25.0%
! TGTAACTCTATGTTGAATTA+AGG + chr4.3:21364913-21364932 MS.gene40100:intron 25.0%
! TGTTTGTGTGATATTATCAT+AGG + chr4.3:21365355-21365374 MS.gene40100:intron 25.0%
! TTAAATGGAAAAGGATATAG+AGG + chr4.3:21365285-21365304 MS.gene40100:intron 25.0%
! TTAGAAGTAATTTCAGAGAT+GGG - chr4.3:21364135-21364154 None:intergenic 25.0%
! TTATTATCCACACACTAATA+TGG + chr4.3:21363989-21364008 MS.gene40100:intron 25.0%
! TTGAGCTATTTATCCAAATA+GGG + chr4.3:21363630-21363649 MS.gene40100:intron 25.0%
!! AACAAAAGGCTCAATTATTT+TGG - chr4.3:21364224-21364243 None:intergenic 25.0%
!! ACAAAAGGCTCAATTATTTT+GGG - chr4.3:21364223-21364242 None:intergenic 25.0%
!! ATTAGAAGTTTTGCAGTAAA+TGG + chr4.3:21365469-21365488 MS.gene40100:intron 25.0%
!! ATTCGTGTTATAAGTTTTTG+AGG - chr4.3:21364096-21364115 None:intergenic 25.0%
!! CATTTTCTTGTTAACAGAAA+AGG - chr4.3:21366125-21366144 None:intergenic 25.0%
!! CTATATCCTTTTCCATTTAA+AGG - chr4.3:21365285-21365304 None:intergenic 25.0%
!! CTGTTAACAAGAAAATGTTT+TGG + chr4.3:21366128-21366147 MS.gene40100:intron 25.0%
!! GATGTGACAATTATAGTTTT+GGG + chr4.3:21364832-21364851 MS.gene40100:intron 25.0%
!! GCATATTTTGCAAATATACA+TGG + chr4.3:21364662-21364681 MS.gene40100:intron 25.0%
!! TGATGTGACAATTATAGTTT+TGG + chr4.3:21364831-21364850 MS.gene40100:intron 25.0%
!!! GGGACAATTTTTTTAACAAA+AGG - chr4.3:21364238-21364257 None:intergenic 25.0%
!!! GTAAGTGGTAAGTTTTATTA+TGG + chr4.3:21363714-21363733 MS.gene40100:intron 25.0%
!!! TTTTTTGAAATAAATGGGGT+CGG + chr4.3:21364980-21364999 MS.gene40100:intron 25.0%
AATGCATCAATACTTAGACA+AGG + chr4.3:21364385-21364404 MS.gene40100:intron 30.0%
ATAAAACTTACCACTTACCA+TGG - chr4.3:21363712-21363731 None:intergenic 30.0%
ATCATGCTTGAAATGTAACT+AGG + chr4.3:21364861-21364880 MS.gene40100:intron 30.0%
ATTGCATTGGAAAGTGAAAT+GGG - chr4.3:21364272-21364291 None:intergenic 30.0%
ATTTATCCAAATAGGGAACA+GGG + chr4.3:21363637-21363656 MS.gene40100:intron 30.0%
CAATTGTTAAATGTGTAGTC+TGG + chr4.3:21365851-21365870 MS.gene40100:intron 30.0%
CCACTTTGCATTTATGATAA+TGG + chr4.3:21364360-21364379 MS.gene40100:intron 30.0%
CCATTATCATAAATGCAAAG+TGG - chr4.3:21364363-21364382 None:intergenic 30.0%
GAAGTTAGACTAGAAAAGTA+AGG + chr4.3:21363659-21363678 MS.gene40100:intron 30.0%
GGAGAATATGACAAATTCTT+TGG + chr4.3:21366177-21366196 MS.gene40100:CDS 30.0%
GGATATAGAGGATTAACATA+TGG + chr4.3:21365297-21365316 MS.gene40100:intron 30.0%
GTTAGAAGTAATTTCAGAGA+TGG - chr4.3:21364136-21364155 None:intergenic 30.0%
GTTGAGCTATTTATCCAAAT+AGG + chr4.3:21363629-21363648 MS.gene40100:intron 30.0%
TAAGAACAAATAAACTCACG+TGG - chr4.3:21366320-21366339 None:intergenic 30.0%
TAGAGTGTAGAATTGGAAAA+AGG - chr4.3:21364303-21364322 None:intergenic 30.0%
TATTGCATTGGAAAGTGAAA+TGG - chr4.3:21364273-21364292 None:intergenic 30.0%
TATTTATCCAAATAGGGAAC+AGG + chr4.3:21363636-21363655 MS.gene40100:intron 30.0%
TCATGCTTGAAATGTAACTA+GGG + chr4.3:21364862-21364881 MS.gene40100:intron 30.0%
TTAGAACAAATTGAGGAGAT+GGG - chr4.3:21363249-21363268 None:intergenic 30.0%
! ATAAGGGCTTCATATGATTT+TGG + chr4.3:21365324-21365343 MS.gene40100:intron 30.0%
! GATAGCATTTTATCTTCTTG+AGG + chr4.3:21365680-21365699 MS.gene40100:intron 30.0%
! TAACGACTTTTCAACTGATT+TGG + chr4.3:21364721-21364740 MS.gene40100:intron 30.0%
! TGAAATGGGCCATATATTTT+GGG - chr4.3:21364258-21364277 None:intergenic 30.0%
! TTTGTTGGAGTATGGTTTTT+GGG + chr4.3:21365598-21365617 MS.gene40100:intron 30.0%
! TTTTAGGCTTTTTGTGGTTA+AGG + chr4.3:21365433-21365452 MS.gene40100:intron 30.0%
!! ACTTCATTTTCTAAAGGAGA+AGG + chr4.3:21363800-21363819 MS.gene40100:intron 30.0%
!! ATTTGTTGGAGTATGGTTTT+TGG + chr4.3:21365597-21365616 MS.gene40100:intron 30.0%
!! CTCTGAAATTACTTCTAACA+TGG + chr4.3:21364137-21364156 MS.gene40100:intron 30.0%
!! CTTCATTTTCTAAAGGAGAA+GGG + chr4.3:21363801-21363820 MS.gene40100:intron 30.0%
!! GCAATAAATTTGTTGGAGTA+TGG + chr4.3:21365590-21365609 MS.gene40100:intron 30.0%
!! TCAAGTTGACAGAAAAGTAT+CGG - chr4.3:21366060-21366079 None:intergenic 30.0%
!!! AAAGCTCAATTATTTTGGGA+CGG + chr4.3:21364499-21364518 MS.gene40100:intron 30.0%
!!! TTTTGAGGTTAGAAGAGTTA+GGG - chr4.3:21364081-21364100 None:intergenic 30.0%
!!! TTTTTGAGGTTAGAAGAGTT+AGG - chr4.3:21364082-21364101 None:intergenic 30.0%
AAGATTTCCTACATAGAAGC+TGG - chr4.3:21363759-21363778 None:intergenic 35.0%
ACAAAATTCAATTCCGGTTG+TGG + chr4.3:21366252-21366271 MS.gene40100:CDS 35.0%
ACTATGAAAACCATGGTAAG+TGG + chr4.3:21363699-21363718 MS.gene40100:intron 35.0%
AGAAGCAGAGGAGATTAAAT+TGG + chr4.3:21365393-21365412 MS.gene40100:intron 35.0%
ATAGCTCAACTAAGAGCTTA+TGG - chr4.3:21363619-21363638 None:intergenic 35.0%
ATCCAAAGATAGTGAAGAGA+AGG - chr4.3:21366348-21366367 None:intergenic 35.0%
ATTTCTATCCTCATTCCATC+TGG - chr4.3:21366445-21366464 None:intergenic 35.0%
CATCTCGGTCATGTATTTAA+AGG + chr4.3:21366487-21366506 MS.gene40100:CDS 35.0%
CTTATCAGAGATGCGAATTA+AGG + chr4.3:21365086-21365105 MS.gene40100:intron 35.0%
GAAGCAGAGGAGATTAAATT+GGG + chr4.3:21365394-21365413 MS.gene40100:intron 35.0%
GAGAGATGAAATAACGTACT+CGG - chr4.3:21363478-21363497 None:intergenic 35.0%
GATGATCTGGTTAAGTTAAG+TGG + chr4.3:21363830-21363849 MS.gene40100:intron 35.0%
GGGATTCAGAAATACAGAAA+TGG - chr4.3:21364061-21364080 None:intergenic 35.0%
GGTCATGTATTTAAAGGTGA+AGG + chr4.3:21366493-21366512 MS.gene40100:CDS 35.0%
GTGAAATGCTATTGACACAA+TGG - chr4.3:21366543-21366562 None:intergenic 35.0%
GTGATATTATCATAGGCATG+TGG + chr4.3:21365362-21365381 MS.gene40100:intron 35.0%
GTTAGAACAAATTGAGGAGA+TGG - chr4.3:21363250-21363269 None:intergenic 35.0%
TAACATGTGAAACATACTGC+AGG - chr4.3:21365931-21365950 None:intergenic 35.0%
TCATGCCCTTTAAATGGAAA+AGG + chr4.3:21365276-21365295 MS.gene40100:intron 35.0%
TGCAGTAAATGGTTAGAGAA+GGG + chr4.3:21365480-21365499 MS.gene40100:intron 35.0%
TTGCAGTAAATGGTTAGAGA+AGG + chr4.3:21365479-21365498 MS.gene40100:intron 35.0%
TTTCTATCCTCATTCCATCT+GGG - chr4.3:21366444-21366463 None:intergenic 35.0%
! AGAGATGGGTTCAAAAATGT+TGG - chr4.3:21364121-21364140 None:intergenic 35.0%
! AGCATTTTATCTTCTTGAGG+TGG + chr4.3:21365683-21365702 MS.gene40100:intron 35.0%
! ATATGACAAATTCTTTGGGG+AGG + chr4.3:21366182-21366201 MS.gene40100:CDS 35.0%
! GAATTTGGAGTTGAAGAGAA+AGG - chr4.3:21363277-21363296 None:intergenic 35.0%
! GTATTATTATCAAGGTACCC+TGG + chr4.3:21366150-21366169 MS.gene40100:intron 35.0%
! GTGAAATGGGCCATATATTT+TGG - chr4.3:21364259-21364278 None:intergenic 35.0%
! TATGACAAATTCTTTGGGGA+GGG + chr4.3:21366183-21366202 MS.gene40100:CDS 35.0%
! TCCACACACTAATATGGTTT+TGG + chr4.3:21363995-21364014 MS.gene40100:intron 35.0%
! TTGTTGGAGTATGGTTTTTG+GGG + chr4.3:21365599-21365618 MS.gene40100:intron 35.0%
! TTTTACTCACGCTCTTTGAA+AGG + chr4.3:21365229-21365248 MS.gene40100:intron 35.0%
!! AAATAACATGTGCTGCTTGT+GGG + chr4.3:21366461-21366480 MS.gene40100:CDS 35.0%
!! GCAATGTTTTAGGCTTTTTG+TGG + chr4.3:21365427-21365446 MS.gene40100:intron 35.0%
!! TTTGTTGTTGACTTGTAGAG+TGG - chr4.3:21366237-21366256 None:intergenic 35.0%
!!! AAGGCTCAATTATTTTGGGA+CGG - chr4.3:21364219-21364238 None:intergenic 35.0%
ACAAACACTATGGCTGACAT+CGG + chr4.3:21364787-21364806 MS.gene40100:intron 40.0%
AGAAGTTTAGCAGGTGTCAA+GGG + chr4.3:21365517-21365536 MS.gene40100:intron 40.0%
AGTAAATGGTTAGAGAAGGG+AGG + chr4.3:21365483-21365502 MS.gene40100:intron 40.0%
ATTATCATAGGCATGTGGCA+GGG + chr4.3:21365367-21365386 MS.gene40100:intron 40.0%
CTGTACTCATGCCCTTTAAA+TGG + chr4.3:21365270-21365289 MS.gene40100:intron 40.0%
GAACAAATAAACTCACGTGG+CGG - chr4.3:21366317-21366336 None:intergenic 40.0%
GCCAAAACCATATTAGTGTG+TGG - chr4.3:21363999-21364018 None:intergenic 40.0%
GGTAGGGTTAGAACAAATTG+AGG - chr4.3:21363256-21363275 None:intergenic 40.0%
TAACTTCCCTGTTCCCTATT+TGG - chr4.3:21363646-21363665 None:intergenic 40.0%
TAGAAGTTTAGCAGGTGTCA+AGG + chr4.3:21365516-21365535 MS.gene40100:intron 40.0%
TATTATCATAGGCATGTGGC+AGG + chr4.3:21365366-21365385 MS.gene40100:intron 40.0%
TCAGAATTCGAAACTGCTCA+GGG - chr4.3:21363443-21363462 None:intergenic 40.0%
TGATGCAGTAGAAGTTTAGC+AGG + chr4.3:21365508-21365527 MS.gene40100:intron 40.0%
TGCCTTCTCTTCACTATCTT+TGG + chr4.3:21366343-21366362 MS.gene40100:intron 40.0%
TGCTCAGTGTCATGTAAGTT+AGG + chr4.3:21363917-21363936 MS.gene40100:intron 40.0%
TGGAGTTGAAGAGAAAGGTA+GGG - chr4.3:21363272-21363291 None:intergenic 40.0%
TGGATAGAACATGCTGAAAG+AGG + chr4.3:21364741-21364760 MS.gene40100:intron 40.0%
TGTCATATTCTCCTGTTCCA+GGG - chr4.3:21366170-21366189 None:intergenic 40.0%
TTGGAGTTGAAGAGAAAGGT+AGG - chr4.3:21363273-21363292 None:intergenic 40.0%
TTGTCATATTCTCCTGTTCC+AGG - chr4.3:21366171-21366190 None:intergenic 40.0%
TTGTGGTTAAGGAGATGTCT+TGG + chr4.3:21365444-21365463 MS.gene40100:intron 40.0%
! ACAAATTGAGGAGATGGGTT+TGG - chr4.3:21363244-21363263 None:intergenic 40.0%
!! AATAACATGTGCTGCTTGTG+GGG + chr4.3:21366462-21366481 MS.gene40100:CDS 40.0%
!! GAAATAACATGTGCTGCTTG+TGG + chr4.3:21366460-21366479 MS.gene40100:CDS 40.0%
!! TTTCGAATTCTGAGGCAGAA+AGG + chr4.3:21363450-21363469 MS.gene40100:CDS 40.0%
!!! CTCAATTATTTTGGGACGGA+GGG + chr4.3:21364503-21364522 MS.gene40100:intron 40.0%
!!! CTCAATTATTTTGGGACGGA+GGG - chr4.3:21364522-21364503 None:intergenic 40.0%
!!! TTTTGGGGCAGTGATGTTAT+TGG + chr4.3:21365614-21365633 MS.gene40100:intron 40.0%
AATTCAATTCCGGTTGTGGC+TGG + chr4.3:21366256-21366275 MS.gene40100:CDS 45.0%
AGAGAGAGAGAGAGAGAGAA+TGG - chr4.3:21364421-21364440 None:intergenic 45.0%
ATTGTACGCACTTGACGAGA+AGG + chr4.3:21364601-21364620 MS.gene40100:intron 45.0%
CAAACACTATGGCTGACATC+GGG + chr4.3:21364788-21364807 MS.gene40100:intron 45.0%
CAGAATTCGAAACTGCTCAG+GGG - chr4.3:21363442-21363461 None:intergenic 45.0%
CTCAGAATTCGAAACTGCTC+AGG - chr4.3:21363444-21363463 None:intergenic 45.0%
CTGAGCAGTTTCGAATTCTG+AGG + chr4.3:21363442-21363461 MS.gene40100:CDS 45.0%
GAGGAGATTAAATTGGGCAG+AGG + chr4.3:21365400-21365419 MS.gene40100:intron 45.0%
TCCAGAAATCGGAGGAAGAA+TGG + chr4.3:21363403-21363422 MS.gene40100:CDS 45.0%
TGCAGATAAACTAAGCGCTC+AGG - chr4.3:21364645-21364664 None:intergenic 45.0%
TTATGTGTTTCACCACCAGC+CGG + chr4.3:21366417-21366436 MS.gene40100:intron 45.0%
TTGTACGCACTTGACGAGAA+GGG + chr4.3:21364602-21364621 MS.gene40100:intron 45.0%
TTTCCTACATAGAAGCTGGC+TGG - chr4.3:21363755-21363774 None:intergenic 45.0%
! AGAAGGGCATGAAGATGATC+TGG + chr4.3:21363817-21363836 MS.gene40100:intron 45.0%
! CAGAGGAGCAGCAATGTTTT+AGG + chr4.3:21365417-21365436 MS.gene40100:intron 45.0%
! TCACGCTCTTTGAAAGGTCA+CGG + chr4.3:21365235-21365254 MS.gene40100:intron 45.0%
! TTATCAAGGTACCCTGGAAC+AGG + chr4.3:21366156-21366175 MS.gene40100:intron 45.0%
!! ATAACATGTGCTGCTTGTGG+GGG + chr4.3:21366463-21366482 MS.gene40100:CDS 45.0%
!!! GCTCAATTATTTTGGGACGG+AGG + chr4.3:21364502-21364521 MS.gene40100:intron 45.0%
!!! GCTCAATTATTTTGGGACGG+AGG - chr4.3:21364521-21364502 None:intergenic 45.0%
!!! ATATTTGTTTATAATTTTTT+TGG + chr4.3:21365808-21365827 MS.gene40100:intron 5.0%
!!! ATTTTTATTTTTTAAGTAAA+AGG + chr4.3:21364695-21364714 MS.gene40100:intron 5.0%
ACACAATGGCGTTCGTTCGT+GGG - chr4.3:21366529-21366548 None:intergenic 50.0%
ATCCTCATTCCATCTGGGTC+CGG - chr4.3:21366439-21366458 None:intergenic 50.0%
GAGATGGTAGGGAGAGAGTT+GGG - chr4.3:21363312-21363331 None:intergenic 50.0%
GCCATTCTTCCTCCGATTTC+TGG - chr4.3:21363407-21363426 None:intergenic 50.0%
GCTGACGAATGGAGATGGTA+GGG - chr4.3:21363323-21363342 None:intergenic 50.0%
GTCTACAGTTGTGCAGGTTG+CGG + chr4.3:21366207-21366226 MS.gene40100:CDS 50.0%
GTGACGTTGAGGGAAGAAAG+AGG - chr4.3:21363222-21363241 None:intergenic 50.0%
TCCAGGAACACCCTCATAGA+AGG - chr4.3:21366286-21366305 None:intergenic 50.0%
TCTACAGTTGTGCAGGTTGC+GGG + chr4.3:21366208-21366227 MS.gene40100:CDS 50.0%
!! AGATGGGTTTGGTGACGTTG+AGG - chr4.3:21363233-21363252 None:intergenic 50.0%
!! GATGGGTTTGGTGACGTTGA+GGG - chr4.3:21363232-21363251 None:intergenic 50.0%
ACGTGGCGGTTTATAGCTCC+AGG - chr4.3:21366303-21366322 None:intergenic 55.0%
AGGAGTAGGTGCAGCAGACA+TGG - chr4.3:21363376-21363395 None:intergenic 55.0%
ATCATAGGCATGTGGCAGGG+AGG + chr4.3:21365370-21365389 MS.gene40100:intron 55.0%
ATGGTAGGGAGAGAGTTGGG+TGG - chr4.3:21363309-21363328 None:intergenic 55.0%
ATGTCTGCTGCACCTACTCC+TGG + chr4.3:21363375-21363394 MS.gene40100:CDS 55.0%
CTTCGGCTGACGAATGGAGA+TGG - chr4.3:21363328-21363347 None:intergenic 55.0%
GACACAATGGCGTTCGTTCG+TGG - chr4.3:21366530-21366549 None:intergenic 55.0%
GAGCCAGCCAGCTTCTATGT+AGG + chr4.3:21363749-21363768 MS.gene40100:intron 55.0%
GAGGGAGTCTACAGTTGTGC+AGG + chr4.3:21366201-21366220 MS.gene40100:CDS 55.0%
GGAACACCCTCATAGAAGGC+TGG - chr4.3:21366282-21366301 None:intergenic 55.0%
GGAGATGGTAGGGAGAGAGT+TGG - chr4.3:21363313-21363332 None:intergenic 55.0%
GGCTGACGAATGGAGATGGT+AGG - chr4.3:21363324-21363343 None:intergenic 55.0%
GGGTGGGGTGAAGGTGAATT+TGG - chr4.3:21363292-21363311 None:intergenic 55.0%
TGGTAGGGAGAGAGTTGGGT+GGG - chr4.3:21363308-21363327 None:intergenic 55.0%
!! GCCTTCTATGAGGGTGTTCC+TGG + chr4.3:21366282-21366301 MS.gene40100:CDS 55.0%
!! TCCTGGCTCGGTCCAGAAAT+CGG + chr4.3:21363392-21363411 MS.gene40100:CDS 55.0%
ACCACGCTTCGGCTGACGAA+TGG - chr4.3:21363334-21363353 None:intergenic 60.0%
AGCCGGACCCAGATGGAATG+AGG + chr4.3:21366434-21366453 MS.gene40100:intron 60.0%
CACTATGGCTGACATCGGGC+TGG + chr4.3:21364792-21364811 MS.gene40100:intron 60.0%
CCACCGCGAAAACCACGCTT+CGG - chr4.3:21363345-21363364 None:intergenic 60.0%
GAGAGAGTTGGGTGGGGTGA+AGG - chr4.3:21363301-21363320 None:intergenic 60.0%
GCTGCTTGTGGGGGACATCT+CGG + chr4.3:21366472-21366491 MS.gene40100:CDS 60.0%
GGTAGGGAGAGAGTTGGGTG+GGG - chr4.3:21363307-21363326 None:intergenic 60.0%
TCATTCCATCTGGGTCCGGC+TGG - chr4.3:21366435-21366454 None:intergenic 60.0%
TCCATTCGTCAGCCGAAGCG+TGG + chr4.3:21363330-21363349 MS.gene40100:CDS 60.0%
TGCTGCACCTACTCCTGGCT+CGG + chr4.3:21363380-21363399 MS.gene40100:CDS 60.0%
TGGCGTTCGTTCGTGGGTGT+CGG - chr4.3:21366523-21366542 None:intergenic 60.0%
TTCTGGACCGAGCCAGGAGT+AGG - chr4.3:21363390-21363409 None:intergenic 60.0%
! CAGCCGAAGCGTGGTTTTCG+CGG + chr4.3:21363339-21363358 MS.gene40100:CDS 60.0%
! GGCTGGCCAGCCTTCTATGA+GGG + chr4.3:21366273-21366292 MS.gene40100:CDS 60.0%
! TCCGATTTCTGGACCGAGCC+AGG - chr4.3:21363396-21363415 None:intergenic 60.0%
! TGGCTGGCCAGCCTTCTATG+AGG + chr4.3:21366272-21366291 MS.gene40100:CDS 60.0%
!! ATGGCTGACATCGGGCTGGT+TGG + chr4.3:21364796-21364815 MS.gene40100:intron 60.0%
!! TGGCTCGGTCCAGAAATCGG+AGG + chr4.3:21363395-21363414 MS.gene40100:CDS 60.0%
!! TGGCTGACATCGGGCTGGTT+GGG + chr4.3:21364797-21364816 MS.gene40100:intron 60.0%
GTGGCAGGGAGGAGAAGCAG+AGG + chr4.3:21365381-21365400 MS.gene40100:intron 65.0%
TTCCATCTGGGTCCGGCTGG+TGG - chr4.3:21366432-21366451 None:intergenic 65.0%
! CCGAAGCGTGGTTTTCGCGG+TGG + chr4.3:21363342-21363361 MS.gene40100:CDS 65.0%
! GAAGGCTGGCCAGCCACAAC+CGG - chr4.3:21366268-21366287 None:intergenic 65.0%
CACCACCAGCCGGACCCAGA+TGG + chr4.3:21366427-21366446 MS.gene40100:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 21363192 21366588 21363192 ID=MS.gene40100
chr4.3 mRNA 21363192 21366588 21363192 ID=MS.gene40100.t1;Parent=MS.gene40100
chr4.3 exon 21363192 21363478 21363192 ID=MS.gene40100.t1.exon1;Parent=MS.gene40100.t1
chr4.3 CDS 21363192 21363478 21363192 ID=cds.MS.gene40100.t1;Parent=MS.gene40100.t1
chr4.3 exon 21366164 21366320 21366164 ID=MS.gene40100.t1.exon2;Parent=MS.gene40100.t1
chr4.3 CDS 21366164 21366320 21366164 ID=cds.MS.gene40100.t1;Parent=MS.gene40100.t1
chr4.3 exon 21366436 21366588 21366436 ID=MS.gene40100.t1.exon3;Parent=MS.gene40100.t1
chr4.3 CDS 21366436 21366588 21366436 ID=cds.MS.gene40100.t1;Parent=MS.gene40100.t1
Gene Sequence

>MS.gene40100

ATGACTGTGAATATACTAAGGATAACACCTCTTTCTTCCCTCAACGTCACCAAACCCATCTCCTCAATTTGTTCTAACCCTACCTTTCTCTTCAACTCCAAATTCACCTTCACCCCACCCAACTCTCTCCCTACCATCTCCATTCGTCAGCCGAAGCGTGGTTTTCGCGGTGGAATTGTCGCCATGTCTGCTGCACCTACTCCTGGCTCGGTCCAGAAATCGGAGGAAGAATGGCAAGCTATTCTCTCCCCTGAGCAGTTTCGAATTCTGAGGCAGAAAGGCACCGAGTACGTTATTTCATCTCTCAAACTCTCAATCAATCAAGCTTTCTTATTTTATAGCTTATGAAATCAACTTATGCTTATATGAAAACAATTTGATTTTATTTATATTATAGAAATAGCTTATACATAAGCACTTTATGCCATAAGCTCTTAGTTGAGCTATTTATCCAAATAGGGAACAGGGAAGTTAGACTAGAAAAGTAAGGTAACCATGTAATATAGTACTATGAAAACCATGGTAAGTGGTAAGTTTTATTATGGCTTAATGAAATGGAGCCAGCCAGCTTCTATGTAGGAAATCTTTGAATTTATTTATAAACTTTAACTTCATTTTCTAAAGGAGAAGGGCATGAAGATGATCTGGTTAAGTTAAGTGGAGTATCGCAGCAAGAAAGACTACAAAATAATATAATGTAAACATTAAACAACTACTCATAAATGTGCTCAGTGTCATGTAAGTTAGGTGATCACACTAGAGATAAGAGAAGTTTCTTACATTCTATGTGTTTCACATTATTATCCACACACTAATATGGTTTTGGCTGAAATTTCTGCATATCAAGTTATCAAATATCTCTACTTCCATTTCTGTATTTCTGAATCCCTAACTCTTCTAACCTCAAAAACTTATAACACGAATGACCAACATTTTTGAACCCATCTCTGAAATTACTTCTAACATGGTTTTTAATTCAATTCTTTTTATAGTTCTATGCTTAACTTTATGACTATTACTCCCTCCGTCCCAAAATAATTGAGCCTTTTGTTAAAAAAATTGTCCCAAAATATATGGCCCATTTCACTTTCCAATGCAATATTAATCACCTTTTTCCAATTCTACACTCTAATTAATACTAATTTCATCACTTTCAGTTCAATATCTTCCACTTTGCATTTATGATAATGGTGAATGCATCAATACTTAGACAAGGACACTTAAAACCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTTATACACTTTTCTTAATACGTGTGAAATGATCAAAAAGCTCAATTATTTTGGGACGGAGGGAGTATAACATTGTTCAAGAGCGAGTAAGTTGTGTCCATTCAGAATTTTTTTCTTACCCATTTCTTGTGCTAATATATTGTACGCACTTGACGAGAAGGGCTCAAACTTGATGAACACCTGAGCGCTTAGTTTATCTGCATATTTTGCAAATATACATGGGGAGTATTACATTTTTATTTTTTAAGTAAAAGGAAGTAACGACTTTTCAACTGATTTGGATAGAACATGCTGAAAGAGGCCAAAATTTAAAATCAATTAAGTACAAACACTATGGCTGACATCGGGCTGGTTGGGTGATGCAGATTTGATGTGACAATTATAGTTTTGGGATCTGTATCATGCTTGAAATGTAACTAGGGTGTATTGTCTTTCATCCTCTACTTTTTTTGTAACTCTATGTTGAATTAAGGCACAACTTTTACTGATTTGCAACTATAAGAATTAATCAATTAGTTTTTTTGAAATAAATGGGGTCGGTGCATGTCTTTGATGAATCAATACAACTTTAACATCATATTATAACATTTAAGTCTGTGGTGTTCATCTTTAGTTATTAAAAACTTATCAGAGATGCGAATTAAGGAATAAGAACTTCACCATTTTCTGTATCACATTATTTAGAGCACCGCATAATTGAGCATATGTAATTTTCATACAATACTACAACTAACACATTTATGTAACATTTTGAAACATGATATCATTTTACTCACGCTCTTTGAAAGGTCACGGTTTCAGCATTTGCTGTACTCATGCCCTTTAAATGGAAAAGGATATAGAGGATTAACATATGGAGATATAAGGGCTTCATATGATTTTGGTTCTTTGTTGTTTGTGTGATATTATCATAGGCATGTGGCAGGGAGGAGAAGCAGAGGAGATTAAATTGGGCAGAGGAGCAGCAATGTTTTAGGCTTTTTGTGGTTAAGGAGATGTCTTGGAAATTAGAAGTTTTGCAGTAAATGGTTAGAGAAGGGAGGAGTGATGCAGTAGAAGTTTAGCAGGTGTCAAGGGAAGATGCTGTCAAAAGAACACAAAGATCTCTTGCAAAGTTTTGTAAACATGCAATAAATTTGTTGGAGTATGGTTTTTGGGGCAGTGATGTTATTGGAGTAACCACTAAATCTTCTAACATGATAATATTAATGGGAGAAGATAGCATTTTATCTTCTTGAGGTGGTCTTGCAATGAAATTTTAATATCTTTTAAAGATTTTTTAACTTTGATATTTTATAAAAAAAAAAAAAAATACCCACTATCATATTTAATTATATATAAATGTATATTTGTTTATAATTTTTTTGGAGGAAATATTGAGAGAAAGTCAATTGTTAAATGTGTAGTCTGGATGATGATTTTGTCATATTAAATTGGTAATCTTAGGCAATTGATTAGACAAAAACCTGCAGTATGTTTCACATGTTATATCTTTTTGGATTTTGTAATATCTATTATGTTGATGAAAATTTTACCTGAACTGTTTGAGTTTAATATATTTCACTCTCTTTCACACTAAATATAGTTGTTTGTACCGATACTTTTCTGTCAACTTGAACGAATAACAGCTGATGTTATATAGACTCAAAATTGAGATTTCCTTTTCTGTTAACAAGAAAATGTTTTGGTATTATTATCAAGGTACCCTGGAACAGGAGAATATGACAAATTCTTTGGGGAGGGAGTCTACAGTTGTGCAGGTTGCGGGACTCCACTCTACAAGTCAACAACAAAATTCAATTCCGGTTGTGGCTGGCCAGCCTTCTATGAGGGTGTTCCTGGAGCTATAAACCGCCACGTGAGTTTATTTGTTCTTATGCTGCCTTCTCTTCACTATCTTTGGATATTACTATTACTGCATCAGCAATTTAAGTCTTTATAAACCTGATAAAATTTATGTGTTTCACCACCAGCCGGACCCAGATGGAATGAGGATAGAAATAACATGTGCTGCTTGTGGGGGACATCTCGGTCATGTATTTAAAGGTGAAGGATTTCCGACACCCACGAACGAACGCCATTGTGTCAATAGCATTTCACTAAAATTTGCGCCAGCCAATTCCTAG

Protein sequence

>MS.gene40100.t1

MTVNILRITPLSSLNVTKPISSICSNPTFLFNSKFTFTPPNSLPTISIRQPKRGFRGGIVAMSAAPTPGSVQKSEEEWQAILSPEQFRILRQKGTEYPGTGEYDKFFGEGVYSCAGCGTPLYKSTTKFNSGCGWPAFYEGVPGAINRHPDPDGMRIEITCAACGGHLGHVFKGEGFPTPTNERHCVNSISLKFAPANS