Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40323.t1 | GAU14498.1 | 71.6 | 1202 | 291 | 7 | 16 | 1210 | 12 | 1170 | 0.00E+00 | 1439.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40323.t1 | Q56YN8 | 56.7 | 1195 | 513 | 2 | 16 | 1209 | 5 | 1196 | 0.0e+00 | 1186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40323.t1 | A0A2K3NM53 | 68.7 | 1251 | 293 | 7 | 16 | 1210 | 12 | 1219 | 0.0e+00 | 1411.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033508 | MS.gene40323 | PPI |
| MS.gene058789 | MS.gene40323 | PPI |
| MS.gene95250 | MS.gene40323 | PPI |
| MS.gene056169 | MS.gene40323 | PPI |
| MS.gene45748 | MS.gene40323 | PPI |
| MS.gene036083 | MS.gene40323 | PPI |
| MS.gene024068 | MS.gene40323 | PPI |
| MS.gene016667 | MS.gene40323 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40323.t1 | MTR_1g051825 | 78.053 | 1212 | 258 | 4 | 2 | 1210 | 14 | 1220 | 0.0 | 1838 |
| MS.gene40323.t1 | MTR_1g051825 | 78.595 | 1196 | 251 | 2 | 16 | 1210 | 5 | 1196 | 0.0 | 1838 |
| MS.gene40323.t1 | MTR_3g110058 | 80.763 | 577 | 55 | 6 | 133 | 706 | 1 | 524 | 0.0 | 876 |
| MS.gene40323.t1 | MTR_3g110055 | 89.427 | 454 | 36 | 3 | 714 | 1157 | 3 | 454 | 0.0 | 743 |
| MS.gene40323.t1 | MTR_8g037325 | 24.460 | 1251 | 785 | 43 | 17 | 1197 | 6 | 1166 | 1.54e-54 | 208 |
| MS.gene40323.t1 | MTR_5g086975 | 43.772 | 281 | 81 | 6 | 253 | 530 | 59 | 265 | 2.60e-48 | 174 |
| MS.gene40323.t1 | MTR_5g087290 | 63.636 | 77 | 28 | 0 | 438 | 514 | 1 | 77 | 3.54e-23 | 96.7 |
| MS.gene40323.t1 | MTR_1g069910 | 22.669 | 697 | 420 | 22 | 534 | 1165 | 518 | 1160 | 2.87e-21 | 101 |
| MS.gene40323.t1 | MTR_0003s0460 | 23.487 | 694 | 419 | 26 | 534 | 1165 | 509 | 1152 | 2.87e-19 | 94.7 |
| MS.gene40323.t1 | MTR_8g072890 | 27.568 | 185 | 99 | 6 | 1026 | 1209 | 1077 | 1227 | 1.70e-11 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40323.t1 | AT2G27170 | 63.096 | 1195 | 437 | 2 | 16 | 1209 | 5 | 1196 | 0.0 | 1452 |
| MS.gene40323.t1 | AT2G27170 | 63.096 | 1195 | 437 | 2 | 16 | 1209 | 5 | 1196 | 0.0 | 1452 |
| MS.gene40323.t1 | AT2G27170 | 61.318 | 1047 | 404 | 1 | 16 | 1061 | 5 | 1051 | 0.0 | 1244 |
| MS.gene40323.t1 | AT2G27170 | 61.318 | 1047 | 404 | 1 | 16 | 1061 | 5 | 1051 | 0.0 | 1244 |
| MS.gene40323.t1 | AT5G62410 | 24.092 | 1266 | 771 | 45 | 17 | 1197 | 6 | 1166 | 4.49e-53 | 204 |
| MS.gene40323.t1 | AT3G47460 | 23.496 | 1247 | 802 | 40 | 17 | 1197 | 6 | 1166 | 7.84e-50 | 193 |
| MS.gene40323.t1 | AT3G47460 | 23.392 | 1244 | 804 | 41 | 17 | 1197 | 6 | 1163 | 1.14e-49 | 193 |
| MS.gene40323.t1 | AT3G54670 | 23.186 | 703 | 398 | 22 | 534 | 1159 | 519 | 1156 | 6.49e-19 | 94.0 |
| MS.gene40323.t1 | AT5G48600 | 28.662 | 157 | 81 | 4 | 1033 | 1188 | 1093 | 1219 | 2.78e-11 | 68.9 |
| MS.gene40323.t1 | AT5G48600 | 28.662 | 157 | 81 | 4 | 1033 | 1188 | 1090 | 1216 | 2.80e-11 | 68.9 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCAGTTCCTTTATATTTC+TGG | 0.089401 | 3.4:+94914535 | None:intergenic |
| TCTTTAAAGTCTTTGATTTC+AGG | 0.122805 | 3.4:+94915180 | None:intergenic |
| ATGCGACTTTGCTGATATTT+TGG | 0.137884 | 3.4:+94920814 | None:intergenic |
| CCTTGTTGTACCACATAATA+TGG | 0.195263 | 3.4:+94922182 | None:intergenic |
| TCAAAAGCATCTGATGTTAA+TGG | 0.235257 | 3.4:+94914512 | None:intergenic |
| TGTTATATTATAGGTCCTTA+TGG | 0.237442 | 3.4:-94919163 | MS.gene40323:intron |
| TGCAAAAGTCACAACATTTC+TGG | 0.238657 | 3.4:-94918735 | MS.gene40323:CDS |
| CAAACTATTCTCCAAATCTT+TGG | 0.239758 | 3.4:+94920763 | None:intergenic |
| AATCTCGTCGAATAGATAAA+AGG | 0.248777 | 3.4:+94910620 | None:intergenic |
| TGAAAGTTTCAAAATTATTC+AGG | 0.250785 | 3.4:-94921959 | MS.gene40323:CDS |
| TAACAAGTTCATTAATCTTT+TGG | 0.253995 | 3.4:+94915578 | None:intergenic |
| ATGAGCATGAAGCAGTTATC+TGG | 0.266630 | 3.4:-94910705 | MS.gene40323:CDS |
| TAAGCTGTTCAATATGATTC+TGG | 0.266756 | 3.4:+94915295 | None:intergenic |
| CCGGACAATTAGTTTGAAAA+AGG | 0.272557 | 3.4:-94922427 | MS.gene40323:CDS |
| AAACATCTTAATCAAGAAAA+TGG | 0.288851 | 3.4:-94918377 | MS.gene40323:CDS |
| CTTACGGCTATAATTGATAA+AGG | 0.290503 | 3.4:-94919125 | MS.gene40323:CDS |
| TTACCAACACAATTAACTTT+AGG | 0.294506 | 3.4:+94930114 | None:intergenic |
| TTGAACTGCTTTGTCCAATA+TGG | 0.296916 | 3.4:+94921703 | None:intergenic |
| TTCAAAATTATTCAGGATAC+AGG | 0.297086 | 3.4:-94921952 | MS.gene40323:intron |
| TGTTGGTTCGATTAATTATA+CGG | 0.297915 | 3.4:+94914769 | None:intergenic |
| TTGGATTTACTGAAGGAAAT+AGG | 0.299353 | 3.4:-94922012 | MS.gene40323:CDS |
| TATTTCTATTAGGTATTTGC+TGG | 0.306897 | 3.4:-94916989 | MS.gene40323:intron |
| ACTTAGTGATGCTAAAATAT+TGG | 0.326441 | 3.4:-94914914 | MS.gene40323:CDS |
| TACTTGTCTACTCTCCCCTT+TGG | 0.332047 | 3.4:+94911383 | None:intergenic |
| TGAACTTGACCATCATATAA+AGG | 0.332080 | 3.4:+94920433 | None:intergenic |
| TGAAATGCCGTGTGAAATAA+AGG | 0.339396 | 3.4:-94934536 | MS.gene40323:intron |
| GTCATTGGAATATGCCATAT+TGG | 0.347738 | 3.4:-94921717 | MS.gene40323:CDS |
| TACCAGAAATATAAAGGAAC+TGG | 0.355141 | 3.4:-94914537 | MS.gene40323:CDS |
| AAAGTTGCCAACAAGATATA+TGG | 0.355228 | 3.4:-94910003 | MS.gene40323:CDS |
| AATTAGCAATGTCCTGCTTA+AGG | 0.360727 | 3.4:+94915500 | None:intergenic |
| TTCAAAAGCACTTGCAAAGA+AGG | 0.362510 | 3.4:-94915455 | MS.gene40323:intron |
| CTTTAAAGTCTTTGATTTCA+GGG | 0.364500 | 3.4:+94915181 | None:intergenic |
| TCACATTAAAGAGGGAGAAT+TGG | 0.365516 | 3.4:-94916702 | MS.gene40323:CDS |
| GGTGATCAAGTAAGCAATAA+TGG | 0.372586 | 3.4:-94916806 | MS.gene40323:CDS |
| TTCCTTCATCTGCCAGGCGC+TGG | 0.377376 | 3.4:+94910067 | None:intergenic |
| AGAATATACCAGAAATATAA+AGG | 0.382207 | 3.4:-94914543 | MS.gene40323:CDS |
| AGACAAGCTGAACTTGTTGT+TGG | 0.382589 | 3.4:-94914020 | MS.gene40323:CDS |
| AATCTTCATCGTGCAATTCC+TGG | 0.385457 | 3.4:-94919074 | MS.gene40323:CDS |
| CACAACATTTCTGGTGTTCA+TGG | 0.386691 | 3.4:-94918726 | MS.gene40323:CDS |
| ATCTGTTGATGCCGACTCTA+TGG | 0.390053 | 3.4:-94914965 | MS.gene40323:CDS |
| TTGGCAACTTTCACTATCTC+TGG | 0.393458 | 3.4:+94910015 | None:intergenic |
| ATTATGAATTGTTAGAATCA+TGG | 0.402791 | 3.4:-94920164 | MS.gene40323:intron |
| AACTGAAGTGATGAGTTTAC+TGG | 0.402941 | 3.4:-94922231 | MS.gene40323:CDS |
| AAATTCAATTTATGTATAAG+AGG | 0.407339 | 3.4:+94918278 | None:intergenic |
| CAAAAGCATCTGATGTTAAT+GGG | 0.408358 | 3.4:+94914513 | None:intergenic |
| AACAGTTATCTGCAAGGATC+TGG | 0.409731 | 3.4:-94916966 | MS.gene40323:CDS |
| GGAAGAAGCTAAAGAATTAG+AGG | 0.409833 | 3.4:-94914606 | MS.gene40323:CDS |
| TAGAACAAATATTACTACTT+TGG | 0.411070 | 3.4:-94919399 | MS.gene40323:CDS |
| GTATTCTCTGAGCTTGTAAA+GGG | 0.416245 | 3.4:-94913513 | MS.gene40323:CDS |
| TGGAGCTGGAGACTAATCTA+AGG | 0.420798 | 3.4:-94915032 | MS.gene40323:CDS |
| TTGAAATGACTGCAGGAATC+AGG | 0.423161 | 3.4:-94918656 | MS.gene40323:intron |
| CTCTGTGGATAAGTGACGTT+GGG | 0.423794 | 3.4:+94918314 | None:intergenic |
| TTCATTCTCTTGAGTCCATA+AGG | 0.424347 | 3.4:+94919148 | None:intergenic |
| TGACAAGCAAAGAAAGTCAT+TGG | 0.429212 | 3.4:-94921732 | MS.gene40323:CDS |
| CAGTTCAGCAACTCAACAAC+TGG | 0.429910 | 3.4:+94918702 | None:intergenic |
| CTTCAGTAAATCCAATCGTT+CGG | 0.431227 | 3.4:+94922020 | None:intergenic |
| TAAAGAATTAGAGGAATTGC+TGG | 0.432513 | 3.4:-94914597 | MS.gene40323:CDS |
| GCAGTTGGTGCTAATGGATC+TGG | 0.438920 | 3.4:-94929606 | MS.gene40323:intron |
| GAATCATATTGAACAGCTTA+AGG | 0.440247 | 3.4:-94915292 | MS.gene40323:CDS |
| GGAAGATGCCACAAAACAAC+TGG | 0.443839 | 3.4:-94920509 | MS.gene40323:CDS |
| ATTAAGATGTTTAATTATCT+CGG | 0.446151 | 3.4:+94918388 | None:intergenic |
| AAAATCATTCCTTTATATGA+TGG | 0.448707 | 3.4:-94920442 | MS.gene40323:CDS |
| CAGCCGTGTTAATGTTATAT+CGG | 0.456177 | 3.4:-94909959 | MS.gene40323:CDS |
| TGTCACTCCATATATCTTGT+TGG | 0.462166 | 3.4:+94909996 | None:intergenic |
| GACTTACAAGAGAAGATCTC+TGG | 0.464467 | 3.4:-94920632 | MS.gene40323:CDS |
| AAACTAACCTTTCTGAATGC+TGG | 0.464844 | 3.4:+94918239 | None:intergenic |
| ACGTGAGAAATCCAAAGATT+TGG | 0.465110 | 3.4:-94920774 | MS.gene40323:CDS |
| ATCTCGTCGAATAGATAAAA+GGG | 0.470398 | 3.4:+94910621 | None:intergenic |
| GGAGTATGAGAGAAAACATC+AGG | 0.470861 | 3.4:-94914627 | MS.gene40323:CDS |
| TATATATCTGCAGACTTTGG+AGG | 0.470897 | 3.4:-94914651 | MS.gene40323:intron |
| ACTGAGAAGCAAAAGGTTGA+TGG | 0.473008 | 3.4:-94915556 | MS.gene40323:CDS |
| GTAAAGCTGCGCGTGATAAG+TGG | 0.474211 | 3.4:-94920081 | MS.gene40323:CDS |
| AGACGAAATGAATAAATTGA+AGG | 0.475995 | 3.4:-94914730 | MS.gene40323:intron |
| TGATATTCTCATCACGGCCA+TGG | 0.476690 | 3.4:+94919429 | None:intergenic |
| CATAGAAATGATCCAGCGCC+TGG | 0.482129 | 3.4:-94910079 | MS.gene40323:intron |
| TCAAGATGAGGGTGGTCATC+GGG | 0.482579 | 3.4:-94911414 | MS.gene40323:CDS |
| AGTCCTAAAGTTAATTGTGT+TGG | 0.482751 | 3.4:-94930117 | MS.gene40323:intron |
| TGTTATGATAAGGAAGAAGA+AGG | 0.486418 | 3.4:-94913475 | MS.gene40323:intron |
| AGTATTCTCTGAGCTTGTAA+AGG | 0.490912 | 3.4:-94913514 | MS.gene40323:CDS |
| AGCAATAATGGTACTATGAC+CGG | 0.495498 | 3.4:-94916794 | MS.gene40323:CDS |
| GACTCAAGAGAATGAACTTA+CGG | 0.495574 | 3.4:-94919141 | MS.gene40323:CDS |
| TCAAAGGTAGCTCGCACAAA+TGG | 0.495653 | 3.4:-94916935 | MS.gene40323:CDS |
| TTACGGCTATAATTGATAAA+GGG | 0.496498 | 3.4:-94919124 | MS.gene40323:CDS |
| TGATAGGAAAAGAGATGAGA+TGG | 0.497935 | 3.4:-94915262 | MS.gene40323:CDS |
| TGAGCATGAAGCAGTTATCT+GGG | 0.498073 | 3.4:-94910704 | MS.gene40323:CDS |
| GGAGATTGATGATCTTGAAC+GGG | 0.498144 | 3.4:-94920050 | MS.gene40323:CDS |
| AGGGAAAGTAGAACTTGAAA+AGG | 0.502341 | 3.4:-94919105 | MS.gene40323:CDS |
| AAGTAGTAATATTTGTTCTA+CGG | 0.504251 | 3.4:+94919402 | None:intergenic |
| ACAGGAAGGGGCTGGACACC+AGG | 0.505153 | 3.4:-94929294 | MS.gene40323:intron |
| CATCTAAATTCTGTACAACT+TGG | 0.506273 | 3.4:+94921810 | None:intergenic |
| GGATCTGGATGTGGCTTCAA+AGG | 0.509761 | 3.4:-94916951 | MS.gene40323:CDS |
| ATCCAGCGCCTGGCAGATGA+AGG | 0.510379 | 3.4:-94910069 | MS.gene40323:CDS |
| GAGTGTTTCCTTCATCTGCC+AGG | 0.513433 | 3.4:+94910061 | None:intergenic |
| AGCTTAAGGCTAGCATTGAT+AGG | 0.514715 | 3.4:-94915278 | MS.gene40323:CDS |
| GAATGAAATTCAAGTCTCAA+TGG | 0.516823 | 3.4:-94920476 | MS.gene40323:CDS |
| TGAACTTGTTGTTGGAGAGA+AGG | 0.517263 | 3.4:-94914012 | MS.gene40323:intron |
| GGAACTAGATGAGGAGAAAG+AGG | 0.518630 | 3.4:-94921777 | MS.gene40323:CDS |
| GAAGAGGGTTGAATTCAGTT+CGG | 0.524749 | 3.4:-94918764 | MS.gene40323:CDS |
| GAATTTAGATGAGAGGTTGA+AGG | 0.524848 | 3.4:-94921798 | MS.gene40323:CDS |
| TTCTCTTTACAGGAAGGGGC+TGG | 0.525303 | 3.4:-94929302 | MS.gene40323:intron |
| ACTTGTTACTGAGAAGCAAA+AGG | 0.526377 | 3.4:-94915563 | MS.gene40323:CDS |
| AGGCGGTACTAGAACTTATG+AGG | 0.526414 | 3.4:-94921992 | MS.gene40323:CDS |
| GAGGTTGAAGGAACTAGATG+AGG | 0.527170 | 3.4:-94921786 | MS.gene40323:CDS |
| ATGTGCAGGGAATTAGAAGA+GGG | 0.527193 | 3.4:-94918779 | MS.gene40323:intron |
| ATGAGTTTACTGGAAAGTGC+TGG | 0.527499 | 3.4:-94922221 | MS.gene40323:CDS |
| ATCAAGATGAGGGTGGTCAT+CGG | 0.528295 | 3.4:-94911415 | MS.gene40323:CDS |
| CAAGAGAAGAAAACAAGACC+TGG | 0.528769 | 3.4:-94915001 | MS.gene40323:CDS |
| CGGCTTAATAATGAAATCCA+TGG | 0.529511 | 3.4:-94919446 | MS.gene40323:CDS |
| GCCGCAGTTGAAATGACTGC+AGG | 0.529614 | 3.4:-94918663 | MS.gene40323:CDS |
| ATGCTGATCTTGTTATGATA+AGG | 0.532275 | 3.4:-94913485 | MS.gene40323:CDS |
| GCGTGATAAGTGGCTTCAAA+AGG | 0.534894 | 3.4:-94920071 | MS.gene40323:CDS |
| CCTCCGTGTCAAATTTCTCT+CGG | 0.537002 | 3.4:+94930145 | None:intergenic |
| AGTATACTTTATCAAAAGCA+AGG | 0.537651 | 3.4:-94920124 | MS.gene40323:CDS |
| ATTAGAGCCTTTACGTAACA+TGG | 0.538375 | 3.4:+94919364 | None:intergenic |
| GCTCTCTTCAATCACAATGC+AGG | 0.539220 | 3.4:-94920026 | MS.gene40323:intron |
| TCAATAGAACGAACTTTCAA+AGG | 0.542211 | 3.4:-94913558 | MS.gene40323:CDS |
| TAATGTAAATAACCTTTGCA+AGG | 0.543394 | 3.4:+94921666 | None:intergenic |
| TTCAGAATAATACTTTGGCA+TGG | 0.549840 | 3.4:+94920603 | None:intergenic |
| GGAGCACGTACTCTGTTAAG+TGG | 0.554715 | 3.4:+94918335 | None:intergenic |
| ACAGAGTACAGAACTGCTGT+TGG | 0.555864 | 3.4:-94910582 | MS.gene40323:CDS |
| CCATATTATGTGGTACAACA+AGG | 0.557632 | 3.4:-94922182 | MS.gene40323:CDS |
| GATGAGGAGAAAGAGGAGCT+TGG | 0.560300 | 3.4:-94921770 | MS.gene40323:CDS |
| CAGACTGCCATGTTACGTAA+AGG | 0.560667 | 3.4:-94919371 | MS.gene40323:CDS |
| ATATCTGCAGACTTTGGAGG+AGG | 0.561029 | 3.4:-94914648 | MS.gene40323:intron |
| CGAACGATTGGATTTACTGA+AGG | 0.563018 | 3.4:-94922019 | MS.gene40323:CDS |
| CCACAAACGCAGATAAAACC+TGG | 0.567824 | 3.4:+94929276 | None:intergenic |
| AGGAGATTGATGATCTTGAA+CGG | 0.567922 | 3.4:-94920051 | MS.gene40323:CDS |
| TGATAGTATTCACATTAAAG+AGG | 0.569460 | 3.4:-94916711 | MS.gene40323:CDS |
| TTGCAAGAATGATCGCATTG+AGG | 0.569879 | 3.4:-94915145 | MS.gene40323:intron |
| GATAGTATTCACATTAAAGA+GGG | 0.571526 | 3.4:-94916710 | MS.gene40323:CDS |
| AGCCTAACCTTTATTTCACA+CGG | 0.571712 | 3.4:+94934529 | None:intergenic |
| TTGTACAGAATTTAGATGAG+AGG | 0.575694 | 3.4:-94921805 | MS.gene40323:CDS |
| TCGCTCAAATCCATATTATG+TGG | 0.577789 | 3.4:-94922192 | MS.gene40323:CDS |
| TGCTGGAACAGTTATCTGCA+AGG | 0.579232 | 3.4:-94916972 | MS.gene40323:CDS |
| TCGAATAGATAAAAGGGAGC+CGG | 0.581732 | 3.4:+94910627 | None:intergenic |
| TATCTGCAAGGATCTGGATG+TGG | 0.582327 | 3.4:-94916960 | MS.gene40323:CDS |
| TGTGGGTGAATAGGTTGACA+AGG | 0.582456 | 3.4:-94922466 | MS.gene40323:intron |
| GGGAGAGTAGACAAGTACAT+TGG | 0.586081 | 3.4:-94911377 | MS.gene40323:CDS |
| AGTGATCTCTTTCAGAAGCT+AGG | 0.587485 | 3.4:-94929419 | MS.gene40323:CDS |
| ATCACTCAGCACAAAACGAA+TGG | 0.587565 | 3.4:+94929436 | None:intergenic |
| TAATTCAGACAATCGTATAC+CGG | 0.588509 | 3.4:-94929240 | MS.gene40323:intron |
| CAGATGATATCACAGCCTCC+AGG | 0.588780 | 3.4:+94914983 | None:intergenic |
| GATAGGAAAAGAGATGAGAT+GGG | 0.590941 | 3.4:-94915261 | MS.gene40323:CDS |
| CATCGGGAAGCAAATCCAAA+GGG | 0.592389 | 3.4:-94911398 | MS.gene40323:CDS |
| TGATGCTGAATTGAAGAGGC+AGG | 0.592769 | 3.4:-94914938 | MS.gene40323:CDS |
| ATCTGATGGAAGAAATTGCA+CGG | 0.594132 | 3.4:-94919466 | MS.gene40323:CDS |
| TGAGTTTACTGGAAAGTGCT+GGG | 0.599963 | 3.4:-94922220 | MS.gene40323:CDS |
| TTATGTGGTACAACAAGGAA+AGG | 0.600132 | 3.4:-94922177 | MS.gene40323:intron |
| TGCTAAGCAAAACCTTGCAA+AGG | 0.600138 | 3.4:-94921678 | MS.gene40323:intron |
| ACCAGAAATATAAAGGAACT+GGG | 0.604212 | 3.4:-94914536 | MS.gene40323:CDS |
| CATCTTAATCAAGAAAATGG+TGG | 0.609588 | 3.4:-94918374 | MS.gene40323:CDS |
| GGGTGAATAGGTTGACAAGG+AGG | 0.611090 | 3.4:-94922463 | MS.gene40323:intron |
| AGCATCAACAACCATAGAGT+CGG | 0.612207 | 3.4:+94914954 | None:intergenic |
| ACAGATAGAAGACCTTAAGC+AGG | 0.613543 | 3.4:-94915512 | MS.gene40323:CDS |
| GTATGGCAAAGATAAGTGCA+AGG | 0.614101 | 3.4:+94910661 | None:intergenic |
| GATAGAAGAGTATCGGACCA+AGG | 0.614259 | 3.4:-94920840 | MS.gene40323:CDS |
| CTATACTCCAGCATTCAGAA+AGG | 0.615466 | 3.4:-94918246 | MS.gene40323:intron |
| TCCTGCAGTCATTTCAACTG+CGG | 0.615852 | 3.4:+94918662 | None:intergenic |
| CAACTTTCACTATCTCTGGA+CGG | 0.617179 | 3.4:+94910019 | None:intergenic |
| GGCTCTTGATATTCTCATCA+CGG | 0.617290 | 3.4:+94919423 | None:intergenic |
| ATTCTCTGAGCTTGTAAAGG+GGG | 0.617970 | 3.4:-94913511 | MS.gene40323:CDS |
| TGATGAGGATGATCAAGATG+AGG | 0.622978 | 3.4:-94911426 | MS.gene40323:CDS |
| GTATACTTTATCAAAAGCAA+GGG | 0.623964 | 3.4:-94920123 | MS.gene40323:CDS |
| ATGTATAAGAGGCGTGACAT+CGG | 0.625735 | 3.4:+94918289 | None:intergenic |
| TTGAACTGCATAACACCGGA+AGG | 0.630360 | 3.4:-94916911 | MS.gene40323:intron |
| TATGTGCAGGGAATTAGAAG+AGG | 0.630755 | 3.4:-94918780 | MS.gene40323:intron |
| GAGATGAGCTTCAAGACGAG+AGG | 0.632000 | 3.4:-94919325 | MS.gene40323:CDS |
| TTCTCTGAGCTTGTAAAGGG+GGG | 0.633732 | 3.4:-94913510 | MS.gene40323:CDS |
| GATGAGGATGATCAAGATGA+GGG | 0.639519 | 3.4:-94911425 | MS.gene40323:CDS |
| TCTCTGTGGATAAGTGACGT+TGG | 0.645662 | 3.4:+94918313 | None:intergenic |
| AGGAGGAAGTGCACTTACGC+CGG | 0.654057 | 3.4:-94922446 | MS.gene40323:CDS |
| TATGGCAAAGATAAGTGCAA+GGG | 0.657792 | 3.4:+94910662 | None:intergenic |
| TCATCGGGAAGCAAATCCAA+AGG | 0.658332 | 3.4:-94911399 | MS.gene40323:CDS |
| GTACTAGAACTTATGAGGAG+AGG | 0.658944 | 3.4:-94921987 | MS.gene40323:CDS |
| GAGCATGAAGCAGTTATCTG+GGG | 0.659869 | 3.4:-94910703 | MS.gene40323:CDS |
| TAGTTTGAAAGATGTAACAA+AGG | 0.665067 | 3.4:-94920747 | MS.gene40323:CDS |
| TATTCTCTGAGCTTGTAAAG+GGG | 0.667791 | 3.4:-94913512 | MS.gene40323:CDS |
| CTTTCAGAAGCTAGGCAGTG+AGG | 0.667807 | 3.4:-94929411 | MS.gene40323:CDS |
| TGGTTTGAACTGCATAACAC+CGG | 0.678098 | 3.4:-94916915 | MS.gene40323:CDS |
| TTGTTGATGCTGAATTGAAG+AGG | 0.678281 | 3.4:-94914942 | MS.gene40323:CDS |
| AGCATGAAGCAGTTATCTGG+GGG | 0.681375 | 3.4:-94910702 | MS.gene40323:CDS |
| AATAATGGTACTATGACCGG+AGG | 0.690528 | 3.4:-94916791 | MS.gene40323:CDS |
| GTACATTGGAGTGAAAGTGA+AGG | 0.691372 | 3.4:-94911363 | MS.gene40323:intron |
| GAGAAGAAAACAAGACCTGG+AGG | 0.691573 | 3.4:-94914998 | MS.gene40323:CDS |
| TTACCGAGAGAAATTTGACA+CGG | 0.697136 | 3.4:-94930148 | MS.gene40323:CDS |
| CTGGCGTTAAATGATCAATG+AGG | 0.697382 | 3.4:+94915232 | None:intergenic |
| CCGAGAGAAATTTGACACGG+AGG | 0.702928 | 3.4:-94930145 | MS.gene40323:CDS |
| GATTTACTGAAGGAAATAGG+CGG | 0.708498 | 3.4:-94922009 | MS.gene40323:CDS |
| GCCATGATAGGTACAAACAG+AGG | 0.718232 | 3.4:-94914169 | MS.gene40323:intron |
| GGCGTGACATCGGATCTCTG+TGG | 0.720765 | 3.4:+94918299 | None:intergenic |
| TCTCCGATATAACATTAACA+CGG | 0.729652 | 3.4:+94909956 | None:intergenic |
| ATCGGGAAGCAAATCCAAAG+GGG | 0.729892 | 3.4:-94911397 | MS.gene40323:CDS |
| GAGGATGATCAAGATGAGGG+TGG | 0.752008 | 3.4:-94911422 | MS.gene40323:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94909924 | 94934584 | 94909924 | ID=MS.gene40323 |
| chr3.4 | mRNA | 94909924 | 94934584 | 94909924 | ID=MS.gene40323.t1;Parent=MS.gene40323 |
| chr3.4 | exon | 94934537 | 94934584 | 94934537 | ID=MS.gene40323.t1.exon1;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94934537 | 94934584 | 94934537 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94930118 | 94930193 | 94930118 | ID=MS.gene40323.t1.exon2;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94930118 | 94930193 | 94930118 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94929586 | 94929624 | 94929586 | ID=MS.gene40323.t1.exon3;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94929586 | 94929624 | 94929586 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94929391 | 94929458 | 94929391 | ID=MS.gene40323.t1.exon4;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94929391 | 94929458 | 94929391 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94929241 | 94929312 | 94929241 | ID=MS.gene40323.t1.exon5;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94929241 | 94929312 | 94929241 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94922396 | 94922475 | 94922396 | ID=MS.gene40323.t1.exon6;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94922396 | 94922475 | 94922396 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94922178 | 94922256 | 94922178 | ID=MS.gene40323.t1.exon7;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94922178 | 94922256 | 94922178 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94921953 | 94922070 | 94921953 | ID=MS.gene40323.t1.exon8;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94921953 | 94922070 | 94921953 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94921679 | 94921854 | 94921679 | ID=MS.gene40323.t1.exon9;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94921679 | 94921854 | 94921679 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94920616 | 94920861 | 94920616 | ID=MS.gene40323.t1.exon10;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94920616 | 94920861 | 94920616 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94920409 | 94920530 | 94920409 | ID=MS.gene40323.t1.exon11;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94920409 | 94920530 | 94920409 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94920027 | 94920171 | 94920027 | ID=MS.gene40323.t1.exon12;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94920027 | 94920171 | 94920027 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94919323 | 94919495 | 94919323 | ID=MS.gene40323.t1.exon13;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94919323 | 94919495 | 94919323 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94919073 | 94919172 | 94919073 | ID=MS.gene40323.t1.exon14;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94919073 | 94919172 | 94919073 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94918657 | 94918793 | 94918657 | ID=MS.gene40323.t1.exon15;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94918657 | 94918793 | 94918657 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94918247 | 94918448 | 94918247 | ID=MS.gene40323.t1.exon16;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94918247 | 94918448 | 94918247 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94916912 | 94916999 | 94916912 | ID=MS.gene40323.t1.exon17;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94916912 | 94916999 | 94916912 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94916679 | 94916827 | 94916679 | ID=MS.gene40323.t1.exon18;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94916679 | 94916827 | 94916679 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94915456 | 94915605 | 94915456 | ID=MS.gene40323.t1.exon19;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94915456 | 94915605 | 94915456 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94915146 | 94915337 | 94915146 | ID=MS.gene40323.t1.exon20;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94915146 | 94915337 | 94915146 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94914887 | 94915070 | 94914887 | ID=MS.gene40323.t1.exon21;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94914887 | 94915070 | 94914887 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94914731 | 94914801 | 94914731 | ID=MS.gene40323.t1.exon22;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94914731 | 94914801 | 94914731 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94914509 | 94914660 | 94914509 | ID=MS.gene40323.t1.exon23;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94914509 | 94914660 | 94914509 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94914013 | 94914181 | 94914013 | ID=MS.gene40323.t1.exon24;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94914013 | 94914181 | 94914013 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94913476 | 94913625 | 94913476 | ID=MS.gene40323.t1.exon25;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94913476 | 94913625 | 94913476 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94911364 | 94911468 | 94911364 | ID=MS.gene40323.t1.exon26;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94911364 | 94911468 | 94911364 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94910580 | 94910754 | 94910580 | ID=MS.gene40323.t1.exon27;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94910580 | 94910754 | 94910580 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| chr3.4 | exon | 94909924 | 94910096 | 94909924 | ID=MS.gene40323.t1.exon28;Parent=MS.gene40323.t1 |
| chr3.4 | CDS | 94909924 | 94910096 | 94909924 | ID=cds.MS.gene40323.t1;Parent=MS.gene40323.t1 |
| Gene Sequence |
| Protein sequence |
