Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40593.t1 | XP_013461937.1 | 98.5 | 844 | 9 | 1 | 1 | 840 | 1 | 844 | 0.00E+00 | 1605.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40593.t1 | Q9LDK9 | 79.6 | 842 | 169 | 3 | 1 | 840 | 1 | 841 | 0.0e+00 | 1312.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40593.t1 | A0A072V2B0 | 98.5 | 844 | 9 | 1 | 1 | 840 | 1 | 844 | 0.0e+00 | 1605.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067998 | MS.gene40593 | PPI |
| MS.gene40593 | MS.gene83395 | PPI |
| MS.gene40593 | MS.gene82941 | PPI |
| MS.gene40593 | MS.gene056570 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40593.t1 | MTR_3g109922 | 98.460 | 844 | 9 | 1 | 1 | 840 | 1 | 844 | 0.0 | 1713 |
| MS.gene40593.t1 | MTR_4g076210 | 33.520 | 713 | 407 | 16 | 18 | 718 | 12 | 669 | 6.35e-107 | 350 |
| MS.gene40593.t1 | MTR_5g079920 | 26.415 | 212 | 142 | 2 | 42 | 253 | 46 | 243 | 4.95e-17 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40593.t1 | AT5G11490 | 80.166 | 842 | 164 | 3 | 1 | 840 | 1 | 841 | 0.0 | 1397 |
| MS.gene40593.t1 | AT5G11490 | 80.215 | 839 | 163 | 3 | 1 | 837 | 1 | 838 | 0.0 | 1391 |
| MS.gene40593.t1 | AT5G11490 | 79.847 | 784 | 156 | 2 | 56 | 837 | 1 | 784 | 0.0 | 1304 |
| MS.gene40593.t1 | AT4G23460 | 36.093 | 604 | 362 | 12 | 18 | 616 | 12 | 596 | 3.76e-108 | 353 |
| MS.gene40593.t1 | AT4G11380 | 35.285 | 615 | 372 | 11 | 18 | 627 | 12 | 605 | 9.82e-106 | 347 |
| MS.gene40593.t1 | AT4G11380 | 35.932 | 590 | 359 | 10 | 43 | 627 | 52 | 627 | 4.30e-105 | 345 |
| MS.gene40593.t1 | AT4G23460 | 34.893 | 513 | 317 | 11 | 109 | 616 | 2 | 502 | 2.83e-83 | 284 |
| MS.gene40593.t1 | AT3G55480 | 30.556 | 144 | 98 | 1 | 45 | 188 | 49 | 190 | 2.12e-13 | 75.1 |
| MS.gene40593.t1 | AT3G55480 | 23.721 | 430 | 271 | 17 | 275 | 671 | 351 | 756 | 4.42e-13 | 73.9 |
| MS.gene40593.t1 | AT3G55480 | 23.721 | 430 | 271 | 17 | 275 | 671 | 223 | 628 | 2.86e-13 | 74.3 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCGGCTTCTGCAGTTTC+TGG | 0.097421 | 3.3:-90267372 | MS.gene40593:CDS |
| CAATCAGCTTTGTCCAAATT+TGG | 0.125872 | 3.3:-90263340 | MS.gene40593:CDS |
| GAGTATTTGGTTGGGCCTTT+AGG | 0.153079 | 3.3:-90271573 | MS.gene40593:CDS |
| TGTCTGCTTTACAAGAAATT+TGG | 0.157651 | 3.3:-90269839 | MS.gene40593:CDS |
| GTTTCAGGGCAAACCAAATT+TGG | 0.200113 | 3.3:+90263327 | None:intergenic |
| ATCAAATGCTTCAACGTTTC+TGG | 0.203616 | 3.3:+90271447 | None:intergenic |
| TGGAAAGTCTGGTTGAAAAT+TGG | 0.212595 | 3.3:-90266986 | MS.gene40593:CDS |
| CTGCCTTAGCCTTAGGTTCT+TGG | 0.226571 | 3.3:+90267066 | None:intergenic |
| CCAGGATCCAGTACAGCTTT+TGG | 0.231595 | 3.3:+90264009 | None:intergenic |
| TATAATGCTCCTTCCTATAA+TGG | 0.233272 | 3.3:-90264186 | MS.gene40593:CDS |
| CCTGCACTTGACTTTATCTA+TGG | 0.262839 | 3.3:-90269115 | MS.gene40593:CDS |
| AGTATTTGGTTGGGCCTTTA+GGG | 0.273406 | 3.3:-90271572 | MS.gene40593:CDS |
| TTCACAACCGCTTGCAGATT+TGG | 0.280848 | 3.3:-90264145 | MS.gene40593:CDS |
| TTGGTTGGGCCTTTAGGGTC+AGG | 0.291482 | 3.3:-90271567 | MS.gene40593:CDS |
| CTCTGAGGTGGTTGACTCTA+AGG | 0.294624 | 3.3:+90269815 | None:intergenic |
| ATTATAGGAAGGAGCATTAT+AGG | 0.298629 | 3.3:+90264188 | None:intergenic |
| CGAATTGATTCCCTTGCAAT+TGG | 0.305678 | 3.3:+90267443 | None:intergenic |
| GTTTGCTACGTGCAGCATTA+AGG | 0.317331 | 3.3:-90269289 | MS.gene40593:intron |
| CATATGATGGCTCGTTATAC+TGG | 0.328980 | 3.3:+90267725 | None:intergenic |
| CAAACCTCTGATAAGGATAT+TGG | 0.329700 | 3.3:+90263958 | None:intergenic |
| GGCGAACTTGGTGGAGTATT+TGG | 0.333179 | 3.3:-90271586 | MS.gene40593:CDS |
| CCCAGTGCTTTCTGAGTCTC+GGG | 0.337763 | 3.3:+90265881 | None:intergenic |
| ATTGATGTTTCGTCTCTCTT+TGG | 0.342308 | 3.3:-90271798 | MS.gene40593:CDS |
| TAGAAGCCTGTAATAAAATA+AGG | 0.343419 | 3.3:+90265677 | None:intergenic |
| AAAGATGATGTGAGAGATAC+TGG | 0.345708 | 3.3:-90264225 | MS.gene40593:CDS |
| AATACGGAAACTGCTTGTTT+TGG | 0.348511 | 3.3:+90265615 | None:intergenic |
| CAAGATTGTATTGCTGTTGT+AGG | 0.357677 | 3.3:-90267110 | MS.gene40593:CDS |
| TTACAGCTACGGCAGCTTGC+TGG | 0.364785 | 3.3:-90271894 | MS.gene40593:CDS |
| GGAAAGTCTGGTTGAAAATT+GGG | 0.365049 | 3.3:-90266985 | MS.gene40593:CDS |
| TGAAGGGGCAGACCCATTAT+AGG | 0.369778 | 3.3:+90264173 | None:intergenic |
| GCCTTTAGGGTCAGGGTTGA+AGG | 0.371889 | 3.3:-90271559 | MS.gene40593:CDS |
| TCCCAGTGCTTTCTGAGTCT+CGG | 0.372039 | 3.3:+90265880 | None:intergenic |
| AGAATTGCATAAGATTGTTC+CGG | 0.387819 | 3.3:+90267817 | None:intergenic |
| CAAATTTGGACAAAGCTGAT+TGG | 0.388207 | 3.3:+90263341 | None:intergenic |
| CAATTGCAAGGGAATCAATT+CGG | 0.388565 | 3.3:-90267442 | MS.gene40593:CDS |
| CAAGTCACAGATTAAAATAA+AGG | 0.389674 | 3.3:-90263404 | MS.gene40593:CDS |
| TGATCCGAGGACTGGCATTA+AGG | 0.389716 | 3.3:-90271629 | MS.gene40593:CDS |
| GCTTGCTGGGAGTCGAGCTC+CGG | 0.391372 | 3.3:-90271880 | MS.gene40593:CDS |
| CCTTCGCCGTCGCAACCGTC+CGG | 0.396107 | 3.3:-90272353 | MS.gene40593:CDS |
| TTCAGAAGGTAATAAACAAT+TGG | 0.400938 | 3.3:+90269756 | None:intergenic |
| CTGGGAGCTGCACTGGCCGC+TGG | 0.402711 | 3.3:-90265863 | MS.gene40593:CDS |
| TTCTTACATGTTCACTGATA+AGG | 0.403515 | 3.3:-90264379 | MS.gene40593:CDS |
| AACTTGGTGGAGTATTTGGT+TGG | 0.409463 | 3.3:-90271582 | MS.gene40593:CDS |
| TAGTCCGAGGAAAATATATA+TGG | 0.418519 | 3.3:+90267763 | None:intergenic |
| ATGAGAGCTGCCTTAGCCTT+AGG | 0.418866 | 3.3:+90267059 | None:intergenic |
| CTGGCACATTTCAGCAGAAA+TGG | 0.420622 | 3.3:-90263990 | MS.gene40593:CDS |
| GAAAGTAACACCTATGAGAT+AGG | 0.421261 | 3.3:-90267661 | MS.gene40593:intron |
| TCAAAGGGATTGTAAGGATC+AGG | 0.422298 | 3.3:-90271658 | MS.gene40593:CDS |
| CGATTAGATTGCGGTGGTGC+AGG | 0.423507 | 3.3:+90272380 | None:intergenic |
| GATTGCAGGATGTTCATGAT+AGG | 0.426072 | 3.3:-90265701 | MS.gene40593:intron |
| TTGTTTATTACCTTCTGAAT+CGG | 0.426616 | 3.3:-90269752 | MS.gene40593:intron |
| GAAAGCACTGGGAGCTGCAC+TGG | 0.427199 | 3.3:-90265870 | MS.gene40593:CDS |
| ATAATGCTCCTTCCTATAAT+GGG | 0.428702 | 3.3:-90264185 | MS.gene40593:CDS |
| GTCAGGACGGTGGCAGTAAT+CGG | 0.429251 | 3.3:-90271522 | MS.gene40593:CDS |
| CATGCTGTAGTCTATCTTCA+AGG | 0.433221 | 3.3:+90269175 | None:intergenic |
| CTATGTTACGTCTGAAGCTC+TGG | 0.434441 | 3.3:-90267336 | MS.gene40593:intron |
| GGCAGCTCTCATATGGATGC+TGG | 0.436064 | 3.3:-90267048 | MS.gene40593:CDS |
| GTGATATCAAACATGACTAT+AGG | 0.444966 | 3.3:-90271822 | MS.gene40593:CDS |
| TGGTTGGGCCTTTAGGGTCA+GGG | 0.446084 | 3.3:-90271566 | MS.gene40593:CDS |
| CCTCAACCCAAAAGCTGTAC+TGG | 0.447071 | 3.3:-90264016 | MS.gene40593:CDS |
| AGGCTAAGGCAGCTCTCATA+TGG | 0.449590 | 3.3:-90267055 | MS.gene40593:CDS |
| GCAGTTTCTGGAGATGGAAA+AGG | 0.450968 | 3.3:-90267360 | MS.gene40593:CDS |
| CTGTCTATTAGTGCGGAATC+CGG | 0.457717 | 3.3:-90264315 | MS.gene40593:CDS |
| TCCGTATGTCTTGGAAAGTC+TGG | 0.465126 | 3.3:-90266997 | MS.gene40593:CDS |
| TACAGCTACGGCAGCTTGCT+GGG | 0.465832 | 3.3:-90271893 | MS.gene40593:CDS |
| TTCGTCTCTCTTTGGTGAGA+TGG | 0.466707 | 3.3:-90271790 | MS.gene40593:CDS |
| AGAATGCCTGTGATGAGCTT+TGG | 0.467508 | 3.3:+90263374 | None:intergenic |
| CGCAGGAACAACAGAATCTC+CGG | 0.469614 | 3.3:+90264296 | None:intergenic |
| TTCAAAGCAAACCTCTGATA+AGG | 0.470543 | 3.3:+90263951 | None:intergenic |
| AGGGAATCAATTCGGGCTGT+TGG | 0.471812 | 3.3:-90267434 | MS.gene40593:CDS |
| TCAAGTGAGCTCAGGAAGTC+CGG | 0.472287 | 3.3:-90267836 | MS.gene40593:CDS |
| CAATGCTTGGCTAGTCGTGC+TGG | 0.472618 | 3.3:+90264110 | None:intergenic |
| CTTCGCCGTCGCAACCGTCC+GGG | 0.475178 | 3.3:-90272352 | MS.gene40593:intron |
| ACTTGGTGGAGTATTTGGTT+GGG | 0.475411 | 3.3:-90271581 | MS.gene40593:CDS |
| TTCTAAGAAAATATCCTCAA+TGG | 0.478818 | 3.3:-90267136 | MS.gene40593:CDS |
| GAATTGATTCCCTTGCAATT+GGG | 0.478912 | 3.3:+90267444 | None:intergenic |
| TAGCATAGTTTCCAACATAC+AGG | 0.481690 | 3.3:+90271721 | None:intergenic |
| CTCTTAACTCAAGTGAGCTC+AGG | 0.486123 | 3.3:-90267844 | MS.gene40593:CDS |
| GCTTCTGCAGTTTCTGGAGA+TGG | 0.486335 | 3.3:-90267366 | MS.gene40593:CDS |
| CATTAAGGAATTTAGTGAAT+GGG | 0.486684 | 3.3:-90269274 | MS.gene40593:CDS |
| AAACTATGCTAAGGTTAATC+CGG | 0.489948 | 3.3:-90271709 | MS.gene40593:CDS |
| GCTCTGAGTATCAGCAAATA+CGG | 0.491058 | 3.3:+90265599 | None:intergenic |
| TTCACTTCGAGTGGCGAACT+TGG | 0.491152 | 3.3:-90271598 | MS.gene40593:CDS |
| TCAATACAGTGCATTGCATC+CGG | 0.492293 | 3.3:-90263523 | MS.gene40593:CDS |
| CACCTCAGAGGAAGCAGCTA+GGG | 0.493233 | 3.3:-90269802 | MS.gene40593:CDS |
| CTTGCTGGGAGTCGAGCTCC+GGG | 0.495428 | 3.3:-90271879 | MS.gene40593:CDS |
| TTTGTCTGTTGTATACCAAA+AGG | 0.496811 | 3.3:-90265538 | MS.gene40593:intron |
| TCTAAGCCACCTGCATCTCT+TGG | 0.497035 | 3.3:-90267797 | MS.gene40593:CDS |
| AATATTTCACTGTTATCTGA+TGG | 0.500382 | 3.3:+90269213 | None:intergenic |
| GAGTTACTTACCTATCTCAT+AGG | 0.500850 | 3.3:+90267651 | None:intergenic |
| GTCAATGATGCAATTGCAAG+AGG | 0.504606 | 3.3:+90263583 | None:intergenic |
| GCATTAAGGAATTTAGTGAA+TGG | 0.506177 | 3.3:-90269275 | MS.gene40593:CDS |
| CCAAAAGCTGTACTGGATCC+TGG | 0.506654 | 3.3:-90264009 | MS.gene40593:CDS |
| GCAGCTCTCATATGGATGCT+GGG | 0.507243 | 3.3:-90267047 | MS.gene40593:CDS |
| AAGATTGTATTGCTGTTGTA+GGG | 0.514619 | 3.3:-90267109 | MS.gene40593:CDS |
| ACTTCGAGTGGCGAACTTGG+TGG | 0.516354 | 3.3:-90271595 | MS.gene40593:CDS |
| AATTGCAAGGGAATCAATTC+GGG | 0.518278 | 3.3:-90267441 | MS.gene40593:CDS |
| TATGGCTGATGTACATCAGC+AGG | 0.521975 | 3.3:-90269097 | MS.gene40593:intron |
| ATCGTCAAAAGAGCAAGATC+CGG | 0.522124 | 3.3:+90271690 | None:intergenic |
| TGCAAATGGTGCTGTTGTCT+TGG | 0.522927 | 3.3:-90269154 | MS.gene40593:CDS |
| GATCATCAATTGCCAATGCT+TGG | 0.526886 | 3.3:+90264097 | None:intergenic |
| AGAACTTGAAATTAGGAGAC+TGG | 0.528548 | 3.3:+90263497 | None:intergenic |
| CCCGAGACTCAGAAAGCACT+GGG | 0.529321 | 3.3:-90265881 | MS.gene40593:CDS |
| TCCTTCAACCCTGACCCTAA+AGG | 0.529512 | 3.3:+90271558 | None:intergenic |
| GATAGACTACAGCATGCAAA+TGG | 0.530107 | 3.3:-90269168 | MS.gene40593:CDS |
| AGGATAATAATAGTTATGTC+AGG | 0.535717 | 3.3:-90271539 | MS.gene40593:CDS |
| CCCCGAGACTCAGAAAGCAC+TGG | 0.536714 | 3.3:-90265882 | MS.gene40593:CDS |
| TGTTGTTCCTGCGCAGAGAG+TGG | 0.538852 | 3.3:-90264286 | MS.gene40593:CDS |
| ATTGCAGGATGTTCATGATA+GGG | 0.541499 | 3.3:-90265700 | MS.gene40593:intron |
| AACTCCTTAATGCCAGTCCT+CGG | 0.542152 | 3.3:+90271625 | None:intergenic |
| CAACAATGTCCAAGAACCTA+AGG | 0.542710 | 3.3:-90267075 | MS.gene40593:CDS |
| CATTTCTGCTGAAATGTGCC+AGG | 0.542817 | 3.3:+90263991 | None:intergenic |
| CTCTTAGAGTCATCAGTACC+CGG | 0.546509 | 3.3:+90271861 | None:intergenic |
| CCACCTCAGAGGAAGCAGCT+AGG | 0.546816 | 3.3:-90269803 | MS.gene40593:CDS |
| GGATCCGATGATCCGAGGAC+TGG | 0.547606 | 3.3:-90271637 | MS.gene40593:CDS |
| AAAATGTGTTACCTGTATGT+TGG | 0.548280 | 3.3:-90271732 | MS.gene40593:CDS |
| AATGCCAGTCCTCGGATCAT+CGG | 0.548429 | 3.3:+90271633 | None:intergenic |
| GCGGTTGTGAAGCTGCTGAA+GGG | 0.548854 | 3.3:+90264157 | None:intergenic |
| CTGATCTAAAATTACAGCTA+CGG | 0.550000 | 3.3:-90271905 | MS.gene40593:CDS |
| CAATCCTTACCTGAGTATCC+TGG | 0.550303 | 3.3:+90271415 | None:intergenic |
| ACCAGACTTTCCAAGACATA+CGG | 0.552347 | 3.3:+90266996 | None:intergenic |
| ACAATGTCTTGTGATGGAAT+TGG | 0.555303 | 3.3:-90269250 | MS.gene40593:CDS |
| CCAGTGCTTTCTGAGTCTCG+GGG | 0.555690 | 3.3:+90265882 | None:intergenic |
| ATGTGCCGTAGGAGTGCATT+GGG | 0.556487 | 3.3:+90263556 | None:intergenic |
| CTGAAAACTCAAATGTCCCT+CGG | 0.557020 | 3.3:+90264352 | None:intergenic |
| CACGCATTACCAAGAGATGC+AGG | 0.558649 | 3.3:+90267788 | None:intergenic |
| TTTGCCTCCACTCTCTGCGC+AGG | 0.558741 | 3.3:+90264279 | None:intergenic |
| CGGGTACTGATGACTCTAAG+AGG | 0.560686 | 3.3:-90271860 | MS.gene40593:CDS |
| GAGTTTGTGTTCACTTCGAG+TGG | 0.560907 | 3.3:-90271607 | MS.gene40593:CDS |
| GCATTTGATGCTCAATGACC+AGG | 0.563623 | 3.3:-90271433 | MS.gene40593:CDS |
| CCATAGATAAAGTCAAGTGC+AGG | 0.564762 | 3.3:+90269115 | None:intergenic |
| GAAAAGATTACCGATTCAGA+AGG | 0.567189 | 3.3:+90269742 | None:intergenic |
| TTGGCAATTGATGATCTGCT+TGG | 0.567360 | 3.3:-90264090 | MS.gene40593:CDS |
| AGCTCACTTGAGTTAAGAGA+GGG | 0.567475 | 3.3:+90267848 | None:intergenic |
| TGTCCAAGAACCTAAGGCTA+AGG | 0.572102 | 3.3:-90267069 | MS.gene40593:CDS |
| GCTCAATGACCAGGATACTC+AGG | 0.572468 | 3.3:-90271424 | MS.gene40593:intron |
| CGGTTGTGAAGCTGCTGAAG+GGG | 0.573044 | 3.3:+90264158 | None:intergenic |
| CATGTGCCGTAGGAGTGCAT+TGG | 0.574006 | 3.3:+90263555 | None:intergenic |
| AGCGGTTGTGAAGCTGCTGA+AGG | 0.575249 | 3.3:+90264156 | None:intergenic |
| GCATGATGCTCCGTATGTCT+TGG | 0.576281 | 3.3:-90267006 | MS.gene40593:CDS |
| TTTGGGTTGAGGGTCAACGG+GGG | 0.576858 | 3.3:+90264027 | None:intergenic |
| CTCCCTAGCTGCTTCCTCTG+AGG | 0.578498 | 3.3:+90269800 | None:intergenic |
| TTATCAGTGAACATGTAAGA+AGG | 0.579603 | 3.3:+90264381 | None:intergenic |
| CAGCTCTCATATGGATGCTG+GGG | 0.579778 | 3.3:-90267046 | MS.gene40593:CDS |
| GTTATCTGATGGAATGTACT+TGG | 0.582108 | 3.3:+90269224 | None:intergenic |
| ATGTTGACATCCCAATTGCA+AGG | 0.584452 | 3.3:-90267454 | MS.gene40593:CDS |
| CCTAGCTGCTTCCTCTGAGG+TGG | 0.585891 | 3.3:+90269803 | None:intergenic |
| ATGTCAATGCTATTGTTGAT+CGG | 0.587080 | 3.3:-90267388 | MS.gene40593:CDS |
| TGATGACCAAAGCTCATCAC+AGG | 0.588639 | 3.3:-90263380 | MS.gene40593:CDS |
| GTATGTTGGAAACTATGCTA+AGG | 0.594327 | 3.3:-90271718 | MS.gene40593:CDS |
| ACGGACCCGGACGGTTGCGA+CGG | 0.594447 | 3.3:+90272347 | None:intergenic |
| TAAGAGGGATCTTTACAAGA+AGG | 0.601150 | 3.3:-90271844 | MS.gene40593:CDS |
| ATGTCTTGTGATGGAATTGG+TGG | 0.601765 | 3.3:-90269247 | MS.gene40593:CDS |
| CAGCACGACTAGCCAAGCAT+TGG | 0.603702 | 3.3:-90264109 | MS.gene40593:CDS |
| CCGGACGGTTGCGACGGCGA+AGG | 0.610990 | 3.3:+90272353 | None:intergenic |
| GAAATTAGGAGACTGGCCGC+CGG | 0.615981 | 3.3:+90263504 | None:intergenic |
| ATGGGCACAATGTCTTGTGA+TGG | 0.620096 | 3.3:-90269256 | MS.gene40593:CDS |
| ACTACCAATATCCTTATCAG+AGG | 0.623846 | 3.3:-90263962 | MS.gene40593:intron |
| CAGTGCTTTCTGAGTCTCGG+GGG | 0.624458 | 3.3:+90265883 | None:intergenic |
| AATGACTTTGCATGTGCCGT+AGG | 0.625693 | 3.3:+90263545 | None:intergenic |
| TGTTGACATCCCAATTGCAA+GGG | 0.626270 | 3.3:-90267453 | MS.gene40593:CDS |
| CGACTCCCAATGCACTCCTA+CGG | 0.627621 | 3.3:-90263561 | MS.gene40593:CDS |
| GTGAGAGATACTGGAAGCAA+TGG | 0.629878 | 3.3:-90264216 | MS.gene40593:CDS |
| GAGCTCACTTGAGTTAAGAG+AGG | 0.630893 | 3.3:+90267847 | None:intergenic |
| GAAAATGCCAAATCTGCAAG+CGG | 0.631748 | 3.3:+90264138 | None:intergenic |
| GCTTCTACAACACAATGTAT+CGG | 0.632864 | 3.3:-90265661 | MS.gene40593:CDS |
| GGGTACTGATGACTCTAAGA+GGG | 0.633805 | 3.3:-90271859 | MS.gene40593:CDS |
| GAGAGTGGAGGCAAATGACA+AGG | 0.634383 | 3.3:-90264271 | MS.gene40593:CDS |
| ATCTGCATCAATACACGTGG+AGG | 0.639042 | 3.3:+90271473 | None:intergenic |
| GGGGCAGACCCATTATAGGA+AGG | 0.639597 | 3.3:+90264177 | None:intergenic |
| ATACAATCTTGACTCCATTG+AGG | 0.643764 | 3.3:+90267122 | None:intergenic |
| ATAGAAGTGTTTGTAGTCCG+AGG | 0.645673 | 3.3:+90267750 | None:intergenic |
| TGTTCCTGCGCAGAGAGTGG+AGG | 0.648267 | 3.3:-90264283 | MS.gene40593:CDS |
| GATCAGGATCCGATGATCCG+AGG | 0.649993 | 3.3:-90271642 | MS.gene40593:CDS |
| TCAATGATGCAATTGCAAGA+GGG | 0.655935 | 3.3:+90263584 | None:intergenic |
| GGAGATCGATTAGATTGCGG+TGG | 0.656896 | 3.3:+90272374 | None:intergenic |
| AGTGAGGGAACGGACCCGGA+CGG | 0.658380 | 3.3:+90272338 | None:intergenic |
| GTGAAAATCAGCAAGACCAG+CGG | 0.660650 | 3.3:+90265847 | None:intergenic |
| TAATAATAGTTATGTCAGGA+CGG | 0.660766 | 3.3:-90271535 | MS.gene40593:CDS |
| TGTATCGGTGGCTGAGAGTG+TGG | 0.662667 | 3.3:-90265646 | MS.gene40593:CDS |
| TGGCAATCTGTCTATTAGTG+CGG | 0.662854 | 3.3:-90264322 | MS.gene40593:CDS |
| TCTACAACACAATGTATCGG+TGG | 0.672727 | 3.3:-90265658 | MS.gene40593:CDS |
| AGTGCTTTCTGAGTCTCGGG+GGG | 0.673467 | 3.3:+90265884 | None:intergenic |
| TCTGGTTGAAAATTGGGACG+AGG | 0.674693 | 3.3:-90266979 | MS.gene40593:CDS |
| ATACAGTGCATTGCATCCGG+CGG | 0.681832 | 3.3:-90263520 | MS.gene40593:CDS |
| AAAATCTGCATCAATACACG+TGG | 0.682353 | 3.3:+90271470 | None:intergenic |
| GGACGAGGAGCATTCTGCCG+AGG | 0.683462 | 3.3:-90266964 | MS.gene40593:intron |
| CTTAGAGTCAACCACCTCAG+AGG | 0.685984 | 3.3:-90269814 | MS.gene40593:CDS |
| GAAGGAGATCGATTAGATTG+CGG | 0.687354 | 3.3:+90272371 | None:intergenic |
| AGCTCTCATATGGATGCTGG+GGG | 0.703952 | 3.3:-90267045 | MS.gene40593:CDS |
| GGATCTGCTTCTAAGTACCA+CGG | 0.710539 | 3.3:-90264250 | MS.gene40593:CDS |
| TAATAGTTATGTCAGGACGG+TGG | 0.728993 | 3.3:-90271532 | MS.gene40593:CDS |
| GCATTACCAAGAGATGCAGG+TGG | 0.740701 | 3.3:+90267791 | None:intergenic |
| TCACTGATAAGGAACACCGA+GGG | 0.741366 | 3.3:-90264368 | MS.gene40593:CDS |
| GCTCACTTGAGTTAAGAGAG+GGG | 0.755910 | 3.3:+90267849 | None:intergenic |
| TTCACTGATAAGGAACACCG+AGG | 0.759479 | 3.3:-90264369 | MS.gene40593:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 90263330 | 90272408 | 90263330 | ID=MS.gene40593 |
| chr3.3 | mRNA | 90263330 | 90272408 | 90263330 | ID=MS.gene40593.t1;Parent=MS.gene40593 |
| chr3.3 | exon | 90272353 | 90272408 | 90272353 | ID=MS.gene40593.t1.exon1;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90272353 | 90272408 | 90272353 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90271425 | 90271941 | 90271425 | ID=MS.gene40593.t1.exon2;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90271425 | 90271941 | 90271425 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90269753 | 90269877 | 90269753 | ID=MS.gene40593.t1.exon3;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90269753 | 90269877 | 90269753 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90269098 | 90269296 | 90269098 | ID=MS.gene40593.t1.exon4;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90269098 | 90269296 | 90269098 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90267662 | 90267890 | 90267662 | ID=MS.gene40593.t1.exon5;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90267662 | 90267890 | 90267662 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90267337 | 90267503 | 90267337 | ID=MS.gene40593.t1.exon6;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90267337 | 90267503 | 90267337 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90266965 | 90267174 | 90266965 | ID=MS.gene40593.t1.exon7;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90266965 | 90267174 | 90266965 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90265844 | 90265954 | 90265844 | ID=MS.gene40593.t1.exon8;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90265844 | 90265954 | 90265844 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90265539 | 90265715 | 90265539 | ID=MS.gene40593.t1.exon9;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90265539 | 90265715 | 90265539 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90263963 | 90264403 | 90263963 | ID=MS.gene40593.t1.exon10;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90263963 | 90264403 | 90263963 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| chr3.3 | exon | 90263330 | 90263620 | 90263330 | ID=MS.gene40593.t1.exon11;Parent=MS.gene40593.t1 |
| chr3.3 | CDS | 90263330 | 90263620 | 90263330 | ID=cds.MS.gene40593.t1;Parent=MS.gene40593.t1 |
| Gene Sequence |
| Protein sequence |
